Query 011971
Match_columns 474
No_of_seqs 933 out of 2979
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 19:03:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 1.4E-61 4.8E-66 492.0 47.6 409 51-474 2-420 (420)
2 4aez_A CDC20, WD repeat-contai 100.0 4.4E-56 1.5E-60 448.6 46.3 384 47-458 1-386 (401)
3 4ggc_A P55CDC, cell division c 100.0 1.5E-50 5.3E-55 392.5 47.2 310 145-454 3-317 (318)
4 1got_B GT-beta; complex (GTP-b 100.0 3.8E-42 1.3E-46 339.1 44.2 275 168-449 56-340 (340)
5 1vyh_C Platelet-activating fac 100.0 7.1E-43 2.4E-47 353.5 39.9 277 168-450 109-409 (410)
6 3ow8_A WD repeat-containing pr 100.0 1.7E-42 5.7E-47 339.3 40.9 280 166-451 31-320 (321)
7 2pbi_B Guanine nucleotide-bind 100.0 3.6E-40 1.2E-44 327.1 41.5 275 168-449 65-354 (354)
8 3frx_A Guanine nucleotide-bind 100.0 4.9E-40 1.7E-44 321.2 41.1 278 167-453 17-318 (319)
9 4gqb_B Methylosome protein 50; 100.0 6.2E-41 2.1E-45 331.4 35.0 281 168-455 31-334 (344)
10 3iz6_a 40S ribosomal protein R 100.0 8.8E-41 3E-45 334.6 33.5 280 168-454 67-377 (380)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.6E-40 2.9E-44 323.1 38.8 285 169-458 18-341 (345)
12 2ynn_A Coatomer subunit beta'; 100.0 2.6E-39 9E-44 313.8 40.9 278 169-452 15-302 (304)
13 4g56_B MGC81050 protein; prote 100.0 4.2E-40 1.4E-44 327.0 34.1 284 167-457 42-348 (357)
14 4ery_A WD repeat-containing pr 100.0 1.4E-38 4.9E-43 308.9 44.1 278 167-451 23-311 (312)
15 1erj_A Transcriptional repress 100.0 6.9E-39 2.4E-43 322.3 41.4 280 167-453 64-390 (393)
16 2hes_X YDR267CP; beta-propelle 100.0 4.4E-39 1.5E-43 316.0 39.0 280 168-452 15-328 (330)
17 2ynn_A Coatomer subunit beta'; 100.0 6E-39 2.1E-43 311.2 38.5 247 206-457 11-264 (304)
18 2xzm_R RACK1; ribosome, transl 100.0 3.4E-38 1.2E-42 311.1 38.9 276 168-453 22-341 (343)
19 1nr0_A Actin interacting prote 100.0 3.3E-38 1.1E-42 335.6 40.2 277 170-455 21-358 (611)
20 4aow_A Guanine nucleotide-bind 100.0 3.1E-37 1.1E-41 301.7 42.7 281 167-454 38-339 (340)
21 3zwl_B Eukaryotic translation 100.0 4E-37 1.4E-41 303.5 43.2 281 168-455 33-349 (369)
22 1vyh_C Platelet-activating fac 100.0 4.9E-38 1.7E-42 318.0 36.8 246 206-457 106-374 (410)
23 1nr0_A Actin interacting prote 100.0 1E-37 3.5E-42 331.8 40.0 282 167-454 147-569 (611)
24 1gxr_A ESG1, transducin-like e 100.0 5.2E-37 1.8E-41 299.1 41.4 277 167-451 51-336 (337)
25 1sq9_A Antiviral protein SKI8; 100.0 1E-37 3.4E-42 312.3 35.2 279 167-453 16-396 (397)
26 3dm0_A Maltose-binding peripla 100.0 6.7E-37 2.3E-41 330.2 42.8 278 167-451 382-692 (694)
27 2pm9_A Protein WEB1, protein t 100.0 4.2E-38 1.4E-42 316.8 31.1 285 169-457 14-342 (416)
28 4gqb_B Methylosome protein 50; 100.0 1.8E-37 6.1E-42 306.6 34.3 242 167-412 82-333 (344)
29 3ow8_A WD repeat-containing pr 100.0 8.1E-37 2.8E-41 298.9 36.8 246 206-457 30-284 (321)
30 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-36 7.8E-41 291.7 39.5 281 168-462 19-306 (313)
31 4g56_B MGC81050 protein; prote 100.0 5E-38 1.7E-42 312.1 28.6 288 172-467 10-316 (357)
32 3k26_A Polycomb protein EED; W 100.0 1E-37 3.4E-42 307.7 30.4 277 167-451 18-365 (366)
33 3i2n_A WD repeat-containing pr 100.0 4.8E-37 1.6E-41 302.1 34.0 282 167-454 18-355 (357)
34 2ymu_A WD-40 repeat protein; u 100.0 2.2E-36 7.5E-41 318.0 41.0 269 168-449 304-577 (577)
35 1r5m_A SIR4-interacting protei 100.0 1.8E-36 6.3E-41 304.6 36.7 276 167-451 108-424 (425)
36 1got_B GT-beta; complex (GTP-b 100.0 1.6E-35 5.6E-40 291.7 40.1 245 206-456 53-305 (340)
37 1p22_A F-BOX/WD-repeat protein 100.0 3.6E-36 1.2E-40 306.3 36.4 276 169-460 135-422 (435)
38 1k8k_C P40, ARP2/3 complex 41 100.0 6.3E-36 2.1E-40 296.1 36.6 280 168-454 9-363 (372)
39 3ei3_B DNA damage-binding prot 100.0 9.3E-36 3.2E-40 297.3 37.5 273 168-452 74-382 (383)
40 4e54_B DNA damage-binding prot 100.0 8.7E-37 3E-41 311.0 30.0 283 167-455 119-433 (435)
41 2pm7_B Protein transport prote 100.0 1.4E-35 4.6E-40 286.6 35.1 243 206-452 7-285 (297)
42 2ymu_A WD-40 repeat protein; u 100.0 4.6E-35 1.6E-39 307.9 40.5 273 167-452 262-539 (577)
43 4ery_A WD repeat-containing pr 100.0 1.6E-34 5.3E-39 280.4 40.6 246 206-457 21-273 (312)
44 1gxr_A ESG1, transducin-like e 100.0 2.1E-35 7.2E-40 287.7 32.1 281 169-457 11-301 (337)
45 3vl1_A 26S proteasome regulato 100.0 9.7E-36 3.3E-40 300.4 30.5 276 170-454 59-367 (420)
46 2pbi_B Guanine nucleotide-bind 100.0 2.1E-34 7.3E-39 285.5 39.0 246 206-455 62-318 (354)
47 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-36 1.2E-40 313.1 27.0 265 185-454 181-519 (524)
48 3v7d_B Cell division control p 100.0 2.6E-34 8.8E-39 294.4 40.4 276 169-457 124-426 (464)
49 1r5m_A SIR4-interacting protei 100.0 1.3E-34 4.5E-39 291.0 37.3 277 169-454 47-363 (425)
50 3gre_A Serine/threonine-protei 100.0 1.4E-35 4.8E-40 301.4 29.8 277 167-449 63-437 (437)
51 2pm9_A Protein WEB1, protein t 100.0 3.3E-36 1.1E-40 302.9 24.8 280 167-453 67-415 (416)
52 3iz6_a 40S ribosomal protein R 100.0 1E-35 3.6E-40 297.7 27.9 259 192-455 51-332 (380)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.5E-34 1.9E-38 290.8 40.8 272 168-454 160-444 (445)
54 3dwl_C Actin-related protein 2 100.0 3.2E-36 1.1E-40 299.7 23.5 274 169-450 13-377 (377)
55 3vl1_A 26S proteasome regulato 100.0 7E-35 2.4E-39 294.1 33.7 276 170-452 100-419 (420)
56 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.9E-34 9.8E-39 283.4 36.8 244 206-454 13-285 (345)
57 1erj_A Transcriptional repress 100.0 4.3E-34 1.5E-38 287.3 38.6 244 206-456 62-345 (393)
58 3bg1_A Protein SEC13 homolog; 100.0 1.2E-35 4E-40 289.8 26.4 244 205-452 10-293 (316)
59 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-33 4.7E-38 287.8 42.3 274 167-457 119-396 (445)
60 4a11_B DNA excision repair pro 100.0 1E-33 3.5E-38 283.2 39.0 284 168-458 44-371 (408)
61 3frx_A Guanine nucleotide-bind 100.0 1.1E-33 3.7E-38 276.2 37.7 240 206-453 15-268 (319)
62 3dw8_B Serine/threonine-protei 100.0 2.9E-34 9.9E-39 291.7 34.7 277 164-450 25-444 (447)
63 2hes_X YDR267CP; beta-propelle 100.0 6.5E-34 2.2E-38 279.1 35.9 247 198-453 5-281 (330)
64 2aq5_A Coronin-1A; WD40 repeat 100.0 5.9E-35 2E-39 293.9 29.0 280 168-453 35-343 (402)
65 3f3f_A Nucleoporin SEH1; struc 100.0 5.8E-34 2E-38 277.6 33.9 247 205-455 8-340 (351)
66 2xzm_R RACK1; ribosome, transl 100.0 3.5E-33 1.2E-37 275.2 38.7 242 206-456 19-289 (343)
67 3mkq_A Coatomer beta'-subunit; 100.0 2E-33 6.8E-38 307.4 39.3 281 168-454 14-304 (814)
68 3v7d_B Cell division control p 100.0 5E-33 1.7E-37 284.7 39.2 273 167-450 162-461 (464)
69 3jrp_A Fusion protein of prote 100.0 1.6E-33 5.5E-38 278.9 33.6 242 206-452 9-287 (379)
70 1pgu_A Actin interacting prote 100.0 5E-33 1.7E-37 293.8 38.2 277 167-454 18-330 (615)
71 2xyi_A Probable histone-bindin 100.0 2.7E-33 9.2E-38 284.9 33.7 256 196-454 116-412 (430)
72 1yfq_A Cell cycle arrest prote 100.0 6.1E-33 2.1E-37 271.6 34.9 269 167-449 11-321 (342)
73 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-33 2.4E-37 317.1 40.1 278 167-452 615-913 (1249)
74 3ei3_B DNA damage-binding prot 100.0 1.9E-33 6.4E-38 280.6 30.8 256 193-458 59-345 (383)
75 1pgu_A Actin interacting prote 100.0 8E-33 2.7E-37 292.2 37.4 275 169-452 208-614 (615)
76 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-33 1.5E-37 308.1 36.1 157 167-327 58-247 (902)
77 4h5i_A Guanine nucleotide-exch 100.0 3.1E-33 1.1E-37 278.4 29.9 278 167-454 14-345 (365)
78 2pm7_B Protein transport prote 100.0 1.1E-32 3.9E-37 266.1 31.7 237 168-409 10-284 (297)
79 3dwl_C Actin-related protein 2 100.0 4.2E-34 1.4E-38 284.3 21.1 240 207-452 10-281 (377)
80 3dw8_B Serine/threonine-protei 100.0 1.4E-33 4.9E-38 286.6 25.1 244 206-455 26-376 (447)
81 1sq9_A Antiviral protein SKI8; 100.0 1.2E-32 4.3E-37 275.2 31.4 244 206-457 14-327 (397)
82 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.6E-32 1.6E-36 277.2 36.3 278 169-453 6-392 (450)
83 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-32 6.1E-37 271.2 32.0 241 206-452 6-274 (372)
84 3i2n_A WD repeat-containing pr 100.0 1.7E-32 5.8E-37 269.6 30.5 255 197-456 7-295 (357)
85 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-32 1.4E-36 310.6 37.4 289 167-461 657-1043(1249)
86 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-32 2.1E-36 295.5 36.3 245 206-455 11-262 (814)
87 3mmy_A MRNA export factor; mRN 100.0 2.4E-31 8.2E-36 261.9 36.9 280 167-455 39-349 (368)
88 3bg1_A Protein SEC13 homolog; 100.0 1.2E-32 4.1E-37 268.5 27.0 239 167-409 13-292 (316)
89 3odt_A Protein DOA1; ubiquitin 100.0 2.1E-31 7.2E-36 256.8 34.8 246 198-457 9-260 (313)
90 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-33 8.3E-38 291.6 22.6 242 207-453 132-429 (524)
91 3zwl_B Eukaryotic translation 100.0 6E-31 2.1E-35 259.2 38.2 244 206-457 30-309 (369)
92 3k26_A Polycomb protein EED; W 100.0 2.3E-32 7.9E-37 269.3 27.7 246 202-455 12-321 (366)
93 1yfq_A Cell cycle arrest prote 100.0 4.5E-32 1.5E-36 265.4 28.4 241 206-457 9-287 (342)
94 4aow_A Guanine nucleotide-bind 100.0 8.3E-31 2.8E-35 255.9 36.8 260 188-454 17-288 (340)
95 3gre_A Serine/threonine-protei 100.0 1.1E-32 3.9E-37 279.9 24.4 258 191-457 47-364 (437)
96 2oaj_A Protein SNI1; WD40 repe 100.0 7.1E-32 2.4E-36 298.4 32.4 197 168-372 18-247 (902)
97 3dm0_A Maltose-binding peripla 100.0 4.9E-31 1.7E-35 284.4 35.7 243 206-455 380-635 (694)
98 3bws_A Protein LP49; two-domai 100.0 1.6E-30 5.4E-35 263.4 37.3 277 170-452 125-432 (433)
99 4e54_B DNA damage-binding prot 100.0 6.3E-32 2.2E-36 275.1 26.1 246 206-456 117-391 (435)
100 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-30 4.4E-35 258.4 34.2 274 168-456 20-340 (355)
101 1l0q_A Surface layer protein; 100.0 4.7E-30 1.6E-34 256.4 38.0 266 181-455 6-278 (391)
102 3jro_A Fusion protein of prote 100.0 2E-31 6.8E-36 290.0 27.9 244 206-454 7-287 (753)
103 3jrp_A Fusion protein of prote 100.0 3.3E-30 1.1E-34 255.1 33.0 239 168-411 12-288 (379)
104 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-30 1.8E-34 260.7 34.7 233 206-454 131-367 (435)
105 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-30 3E-34 247.9 33.9 245 168-417 12-344 (351)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1E-30 3.6E-35 257.4 27.1 256 178-450 49-331 (343)
107 3mmy_A MRNA export factor; mRN 100.0 2.2E-29 7.6E-34 247.8 32.8 256 191-457 23-309 (368)
108 4gq1_A NUP37; propeller, trans 100.0 7.9E-30 2.7E-34 256.3 29.7 269 178-451 31-388 (393)
109 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-29 6.6E-34 249.9 30.6 250 191-455 3-274 (355)
110 4aez_A CDC20, WD repeat-contai 100.0 5.4E-29 1.9E-33 250.5 34.3 245 166-418 133-388 (401)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-29 6.3E-34 253.7 29.3 241 210-455 36-302 (402)
112 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-30 1.6E-34 262.6 24.3 253 168-451 16-296 (588)
113 3lrv_A PRE-mRNA-splicing facto 100.0 8.9E-30 3.1E-34 250.7 22.6 232 215-455 43-295 (343)
114 2w18_A PALB2, fancn, partner a 100.0 2.2E-28 7.6E-33 235.9 31.7 275 167-450 39-355 (356)
115 2xyi_A Probable histone-bindin 100.0 5.7E-29 1.9E-33 252.9 28.8 238 168-410 129-410 (430)
116 4gga_A P55CDC, cell division c 100.0 4.6E-28 1.6E-32 245.3 34.5 256 167-429 147-414 (420)
117 4a11_B DNA excision repair pro 100.0 3.8E-28 1.3E-32 242.7 32.3 276 166-451 98-404 (408)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-28 4.8E-33 251.3 29.3 234 209-450 5-337 (450)
119 3jro_A Fusion protein of prote 100.0 2.3E-28 7.8E-33 265.9 30.6 239 168-410 10-285 (753)
120 3bws_A Protein LP49; two-domai 100.0 1.8E-27 6.3E-32 240.8 35.1 266 188-457 102-395 (433)
121 4h5i_A Guanine nucleotide-exch 100.0 1.2E-28 4.3E-33 245.1 25.8 236 169-411 75-344 (365)
122 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-28 5.3E-33 251.4 24.2 253 166-441 51-350 (588)
123 1l0q_A Surface layer protein; 100.0 2E-26 6.7E-31 230.0 38.6 280 169-455 33-345 (391)
124 4ggc_A P55CDC, cell division c 100.0 1.4E-25 4.7E-30 216.7 35.3 239 167-412 67-317 (318)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.4E-27 1.9E-31 237.4 26.5 289 169-465 64-400 (415)
126 4gq1_A NUP37; propeller, trans 100.0 3.7E-27 1.3E-31 236.7 24.1 232 173-409 95-388 (393)
127 3u4y_A Uncharacterized protein 99.9 2.6E-24 8.9E-29 209.6 33.0 271 178-455 10-307 (331)
128 1nir_A Nitrite reductase; hemo 99.9 4.2E-24 1.4E-28 223.4 34.7 274 175-456 145-462 (543)
129 1ri6_A Putative isomerase YBHE 99.9 3.8E-24 1.3E-28 208.6 30.7 267 180-452 7-308 (343)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.9E-28 213.0 35.0 247 178-434 144-410 (415)
131 1nir_A Nitrite reductase; hemo 99.9 9.6E-24 3.3E-28 220.6 33.8 283 170-458 181-520 (543)
132 3vgz_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 203.6 34.8 266 170-443 43-335 (353)
133 2ojh_A Uncharacterized protein 99.9 1.7E-24 5.8E-29 205.8 24.5 253 185-443 20-293 (297)
134 2w18_A PALB2, fancn, partner a 99.9 2.4E-24 8E-29 207.9 24.0 183 218-408 143-355 (356)
135 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-24 1.7E-28 230.1 23.8 280 170-453 19-394 (723)
136 1pby_B Quinohemoprotein amine 99.9 5.2E-23 1.8E-27 200.0 28.2 266 180-458 4-316 (337)
137 2ecf_A Dipeptidyl peptidase IV 99.9 3.3E-23 1.1E-27 224.4 27.2 277 169-452 38-413 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-22 5.1E-27 218.2 29.4 278 168-454 82-437 (706)
139 3hfq_A Uncharacterized protein 99.9 1.3E-21 4.3E-26 192.2 31.2 263 186-452 15-317 (347)
140 3scy_A Hypothetical bacterial 99.9 9.5E-21 3.2E-25 187.1 35.5 262 186-452 26-337 (361)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-21 5.5E-26 198.3 30.4 291 157-452 26-405 (434)
142 2ecf_A Dipeptidyl peptidase IV 99.9 9E-22 3.1E-26 213.2 27.9 274 169-453 110-460 (741)
143 1k32_A Tricorn protease; prote 99.9 2.7E-21 9.2E-26 217.6 28.7 278 167-454 52-463 (1045)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-21 6.1E-26 209.7 25.4 276 170-454 28-393 (706)
145 3vgz_A Uncharacterized protein 99.9 2.9E-20 1E-24 182.1 31.8 241 208-456 40-307 (353)
146 1ri6_A Putative isomerase YBHE 99.9 1.2E-20 4.1E-25 183.7 28.4 260 169-433 39-334 (343)
147 3u4y_A Uncharacterized protein 99.9 3E-20 1E-24 180.8 29.9 235 215-455 4-255 (331)
148 1jmx_B Amine dehydrogenase; ox 99.9 2.8E-20 9.7E-25 181.7 27.9 275 173-458 5-331 (349)
149 2ojh_A Uncharacterized protein 99.9 1.5E-20 5E-25 178.4 24.4 222 226-455 18-261 (297)
150 1k32_A Tricorn protease; prote 99.9 1.9E-20 6.4E-25 210.7 29.2 272 169-454 297-639 (1045)
151 1z68_A Fibroblast activation p 99.9 2.6E-21 8.9E-26 209.0 19.5 275 172-452 20-391 (719)
152 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-20 6.4E-25 202.1 26.2 267 169-440 62-428 (723)
153 3pe7_A Oligogalacturonate lyas 99.9 6E-20 2E-24 182.7 25.5 280 168-452 36-382 (388)
154 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.8E-19 1.3E-23 176.3 28.6 264 187-453 14-342 (365)
155 3o4h_A Acylamino-acid-releasin 99.8 5E-20 1.7E-24 194.1 23.1 265 168-452 22-315 (582)
156 3o4h_A Acylamino-acid-releasin 99.8 4.1E-20 1.4E-24 194.8 21.3 234 208-450 21-274 (582)
157 1pby_B Quinohemoprotein amine 99.8 5.1E-19 1.7E-23 171.7 27.1 240 170-421 36-321 (337)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 9.3E-20 3.2E-24 185.2 21.1 250 187-450 23-331 (434)
159 3hfq_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 167.6 29.0 242 170-414 42-323 (347)
160 3fvz_A Peptidyl-glycine alpha- 99.8 2.9E-17 9.8E-22 160.5 32.4 241 208-453 23-323 (329)
161 3scy_A Hypothetical bacterial 99.8 4E-17 1.4E-21 161.0 31.4 257 169-430 51-360 (361)
162 3c5m_A Oligogalacturonate lyas 99.8 2.6E-18 8.8E-23 170.9 22.6 276 169-451 37-381 (396)
163 1z68_A Fibroblast activation p 99.8 1.7E-18 5.7E-23 187.0 21.4 281 169-454 61-445 (719)
164 1q7f_A NHL, brain tumor CG1071 99.8 4E-16 1.4E-20 148.6 34.6 236 206-453 27-281 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-17 1.4E-21 177.0 29.4 266 170-441 19-382 (740)
166 4a5s_A Dipeptidyl peptidase 4 99.8 8.8E-18 3E-22 182.2 20.0 246 209-459 17-360 (740)
167 3pe7_A Oligogalacturonate lyas 99.8 1E-16 3.6E-21 159.2 25.5 262 191-455 14-332 (388)
168 3azo_A Aminopeptidase; POP fam 99.8 1.8E-16 6E-21 169.4 26.8 276 168-454 24-371 (662)
169 2oiz_A Aromatic amine dehydrog 99.8 5.2E-16 1.8E-20 153.7 27.9 256 172-434 54-360 (361)
170 2gop_A Trilobed protease; beta 99.7 1.2E-15 3.9E-20 149.3 30.0 238 186-451 42-330 (347)
171 2dg1_A DRP35, lactonase; beta 99.7 1.7E-15 5.7E-20 147.5 30.6 262 170-442 8-300 (333)
172 1jmx_B Amine dehydrogenase; ox 99.7 9.6E-17 3.3E-21 156.5 20.5 224 213-455 4-287 (349)
173 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.7E-16 1.3E-20 154.7 24.6 241 169-411 41-342 (365)
174 2oiz_A Aromatic amine dehydrog 99.7 6.4E-16 2.2E-20 153.0 24.6 255 186-453 30-335 (361)
175 2xdw_A Prolyl endopeptidase; a 99.7 3.9E-15 1.3E-19 160.6 30.2 263 188-454 99-416 (710)
176 2z2n_A Virginiamycin B lyase; 99.7 4.8E-13 1.6E-17 127.3 40.4 273 168-453 15-296 (299)
177 3fvz_A Peptidyl-glycine alpha- 99.7 3.6E-14 1.2E-18 138.4 32.9 234 170-409 26-321 (329)
178 3azo_A Aminopeptidase; POP fam 99.7 1.3E-15 4.5E-20 162.6 22.4 241 206-451 21-322 (662)
179 3c5m_A Oligogalacturonate lyas 99.7 7.3E-16 2.5E-20 153.1 18.1 260 190-456 13-333 (396)
180 1q7f_A NHL, brain tumor CG1071 99.7 8.1E-14 2.8E-18 132.5 31.6 232 169-412 31-282 (286)
181 1rwi_B Serine/threonine-protei 99.7 2.2E-14 7.5E-19 134.9 26.9 241 210-456 25-268 (270)
182 3e5z_A Putative gluconolactona 99.7 6.2E-14 2.1E-18 134.2 30.1 230 206-452 25-284 (296)
183 1qks_A Cytochrome CD1 nitrite 99.7 2.2E-13 7.6E-18 142.3 35.7 269 178-453 166-478 (567)
184 3dsm_A Uncharacterized protein 99.7 2.4E-14 8E-19 139.7 25.1 261 186-457 16-306 (328)
185 1qks_A Cytochrome CD1 nitrite 99.6 6.3E-13 2.1E-17 138.9 34.4 285 169-457 198-543 (567)
186 2dg1_A DRP35, lactonase; beta 99.6 6.6E-14 2.3E-18 136.1 25.3 236 209-451 6-262 (333)
187 3no2_A Uncharacterized protein 99.6 3.2E-13 1.1E-17 128.4 28.6 211 219-440 4-231 (276)
188 2gop_A Trilobed protease; beta 99.6 5.7E-14 2E-18 137.2 23.9 230 170-423 61-342 (347)
189 3dsm_A Uncharacterized protein 99.6 2.7E-13 9.4E-18 132.1 28.6 238 170-419 46-310 (328)
190 2bkl_A Prolyl endopeptidase; m 99.6 2.9E-14 1E-18 153.4 23.3 259 188-454 95-399 (695)
191 2qc5_A Streptogramin B lactona 99.6 1.2E-11 4E-16 117.6 38.8 270 168-450 20-298 (300)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4E-13 1.4E-17 129.1 28.7 237 208-452 17-299 (314)
193 1rwi_B Serine/threonine-protei 99.6 4.6E-13 1.6E-17 125.8 26.8 238 168-413 24-267 (270)
194 2xdw_A Prolyl endopeptidase; a 99.6 6.3E-13 2.1E-17 143.3 29.2 251 156-412 111-416 (710)
195 2z2n_A Virginiamycin B lyase; 99.6 2.9E-11 9.9E-16 114.8 35.8 235 207-451 13-254 (299)
196 3no2_A Uncharacterized protein 99.6 3.1E-12 1E-16 121.6 28.5 210 176-395 3-230 (276)
197 3e5z_A Putative gluconolactona 99.6 2E-12 6.7E-17 123.7 26.8 229 169-412 29-288 (296)
198 1yr2_A Prolyl oligopeptidase; 99.6 6.9E-13 2.4E-17 143.7 26.3 241 209-454 163-443 (741)
199 2mad_H Methylamine dehydrogena 99.5 3.8E-11 1.3E-15 119.1 36.2 257 188-458 48-356 (373)
200 2mad_H Methylamine dehydrogena 99.5 4.2E-11 1.4E-15 118.7 35.6 241 172-417 70-357 (373)
201 3sjl_D Methylamine dehydrogena 99.5 4.4E-12 1.5E-16 125.1 26.5 266 186-463 58-374 (386)
202 1xip_A Nucleoporin NUP159; bet 99.5 1.9E-13 6.6E-18 135.2 16.7 273 169-454 39-384 (388)
203 3hrp_A Uncharacterized protein 99.5 2.4E-11 8.3E-16 122.1 30.7 233 209-450 131-408 (409)
204 3sjl_D Methylamine dehydrogena 99.5 1.1E-11 3.8E-16 122.2 26.5 243 186-432 108-384 (386)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.4E-11 1.2E-15 115.4 29.1 232 170-410 20-299 (314)
206 2bkl_A Prolyl endopeptidase; m 99.5 9.1E-13 3.1E-17 141.7 19.8 250 155-413 106-400 (695)
207 2qc5_A Streptogramin B lactona 99.5 3.5E-10 1.2E-14 107.3 35.3 235 207-451 18-259 (300)
208 1yr2_A Prolyl oligopeptidase; 99.4 1E-11 3.5E-16 134.5 23.6 250 155-412 148-443 (741)
209 3c75_H MADH, methylamine dehyd 99.4 5E-11 1.7E-15 119.5 26.6 260 187-458 99-408 (426)
210 3g4e_A Regucalcin; six bladed 99.4 1.1E-10 3.8E-15 111.8 28.0 224 208-440 12-260 (297)
211 2ghs_A AGR_C_1268P; regucalcin 99.4 4.8E-10 1.6E-14 109.0 31.7 219 210-441 50-291 (326)
212 3iuj_A Prolyl endopeptidase; h 99.4 2.7E-11 9.1E-16 130.2 24.8 242 207-454 127-407 (693)
213 1xip_A Nucleoporin NUP159; bet 99.4 7E-12 2.4E-16 124.1 17.6 171 252-439 39-231 (388)
214 3c75_H MADH, methylamine dehyd 99.4 7.3E-11 2.5E-15 118.3 24.0 243 172-417 122-409 (426)
215 3g4e_A Regucalcin; six bladed 99.4 8.5E-10 2.9E-14 105.6 29.4 220 169-397 14-261 (297)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.4 8.7E-10 3E-14 109.0 29.9 266 178-457 54-342 (376)
217 3dr2_A Exported gluconolactona 99.3 3.2E-10 1.1E-14 108.9 25.3 227 207-446 43-301 (305)
218 3hrp_A Uncharacterized protein 99.3 7.6E-10 2.6E-14 111.1 28.2 231 169-408 132-408 (409)
219 1kb0_A Quinohemoprotein alcoho 99.3 1.4E-10 4.8E-15 124.0 23.4 278 178-460 78-515 (677)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.8E-09 6.3E-14 106.6 27.6 260 174-449 100-375 (376)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 8E-09 2.7E-13 100.2 31.2 214 170-396 51-290 (326)
222 1yiq_A Quinohemoprotein alcoho 99.3 5.2E-10 1.8E-14 119.8 24.6 279 178-461 71-514 (689)
223 2ece_A 462AA long hypothetical 99.2 1.6E-08 5.4E-13 100.6 30.9 251 188-440 44-399 (462)
224 1kb0_A Quinohemoprotein alcoho 99.2 2E-09 6.8E-14 115.1 26.5 273 177-453 128-568 (677)
225 1mda_H Methylamine dehydrogena 99.2 2.6E-10 8.9E-15 112.4 18.1 253 188-460 47-354 (368)
226 1yiq_A Quinohemoprotein alcoho 99.2 1.2E-09 4.2E-14 117.0 24.4 262 177-440 121-537 (689)
227 1npe_A Nidogen, entactin; glyc 99.2 3E-08 1E-12 93.0 31.0 247 180-434 3-263 (267)
228 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.2E-14 117.2 23.8 249 156-413 115-408 (693)
229 2qe8_A Uncharacterized protein 99.2 3.7E-09 1.3E-13 103.3 24.8 231 209-445 17-314 (343)
230 3hxj_A Pyrrolo-quinoline quino 99.2 1E-09 3.5E-14 105.9 19.9 264 170-455 62-327 (330)
231 1mda_H Methylamine dehydrogena 99.2 9.1E-10 3.1E-14 108.5 19.5 249 172-431 69-366 (368)
232 3dr2_A Exported gluconolactona 99.2 7.8E-09 2.7E-13 99.2 23.6 223 169-407 46-303 (305)
233 2iwa_A Glutamine cyclotransfer 99.1 3.5E-08 1.2E-12 92.2 24.8 205 198-411 10-238 (266)
234 2hz6_A Endoplasmic reticulum t 99.1 5.4E-11 1.8E-15 117.9 5.4 202 219-434 8-216 (369)
235 2hz6_A Endoplasmic reticulum t 99.1 6.7E-11 2.3E-15 117.2 6.1 258 177-452 9-279 (369)
236 1fwx_A Nitrous oxide reductase 99.1 3.3E-09 1.1E-13 109.0 18.3 249 179-453 102-432 (595)
237 2iwa_A Glutamine cyclotransfer 99.1 5.3E-08 1.8E-12 91.0 24.3 195 168-368 21-238 (266)
238 3hxj_A Pyrrolo-quinoline quino 99.0 1.8E-09 6.3E-14 104.0 12.9 251 178-450 31-282 (330)
239 2ad6_A Methanol dehydrogenase 99.0 8.3E-08 2.8E-12 100.4 26.3 277 178-460 63-502 (571)
240 1kv9_A Type II quinohemoprotei 99.0 1.1E-07 3.6E-12 101.6 26.4 278 178-460 67-496 (668)
241 2qe8_A Uncharacterized protein 99.0 5E-08 1.7E-12 95.3 21.7 223 169-395 18-308 (343)
242 1kv9_A Type II quinohemoprotei 99.0 5.5E-08 1.9E-12 103.8 23.7 274 177-452 117-552 (668)
243 1w6s_A Methanol dehydrogenase 99.0 1.8E-07 6.2E-12 98.0 26.2 280 178-460 63-511 (599)
244 3mbr_X Glutamine cyclotransfer 99.0 3.4E-07 1.2E-11 83.9 24.7 195 153-352 6-222 (243)
245 2fp8_A Strictosidine synthase; 99.0 5E-07 1.7E-11 87.1 27.4 240 209-454 19-315 (322)
246 1npe_A Nidogen, entactin; glyc 98.9 2.7E-06 9.2E-11 79.5 29.4 229 221-456 2-242 (267)
247 4a2l_A BT_4663, two-component 98.9 1.4E-05 4.8E-10 86.9 38.7 268 168-453 263-572 (795)
248 1flg_A Protein (quinoprotein e 98.9 5.3E-07 1.8E-11 94.4 26.3 279 178-463 69-527 (582)
249 4a2l_A BT_4663, two-component 98.9 1.1E-05 3.8E-10 87.8 37.6 270 170-453 175-481 (795)
250 2ece_A 462AA long hypothetical 98.9 2.6E-07 9E-12 91.9 22.2 214 179-396 97-399 (462)
251 3nol_A Glutamine cyclotransfer 98.9 3.5E-07 1.2E-11 84.6 21.0 194 154-352 29-243 (262)
252 1ijq_A LDL receptor, low-densi 98.9 1.9E-05 6.5E-10 75.9 34.2 230 180-418 3-246 (316)
253 3nok_A Glutaminyl cyclase; bet 98.8 3.6E-07 1.2E-11 84.5 20.8 190 157-352 44-253 (268)
254 2p4o_A Hypothetical protein; p 98.8 5.3E-06 1.8E-10 79.3 30.1 226 208-443 31-279 (306)
255 2ad6_A Methanol dehydrogenase 98.8 7.7E-07 2.6E-11 93.0 26.0 256 177-437 115-522 (571)
256 3nol_A Glutamine cyclotransfer 98.8 1.4E-06 4.8E-11 80.5 24.2 188 199-395 33-242 (262)
257 1fwx_A Nitrous oxide reductase 98.8 5.3E-07 1.8E-11 92.7 23.2 189 260-452 101-361 (595)
258 3v64_C Agrin; beta propeller, 98.8 1.2E-05 4.2E-10 78.5 32.2 240 171-418 37-283 (349)
259 3v65_B Low-density lipoprotein 98.8 9E-06 3.1E-10 80.6 31.6 250 172-429 81-337 (386)
260 3p5b_L Low density lipoprotein 98.8 3.8E-05 1.3E-09 76.5 35.9 246 176-429 81-339 (400)
261 3nok_A Glutaminyl cyclase; bet 98.8 2.2E-06 7.4E-11 79.3 22.8 188 198-395 44-252 (268)
262 1w6s_A Methanol dehydrogenase 98.7 6.1E-06 2.1E-10 86.4 28.5 256 180-440 124-535 (599)
263 3mbr_X Glutamine cyclotransfer 98.7 7.8E-06 2.7E-10 74.9 24.4 188 199-395 11-221 (243)
264 3v9f_A Two-component system se 98.6 6.9E-05 2.4E-09 81.2 34.6 273 169-453 212-525 (781)
265 1flg_A Protein (quinoprotein e 98.6 4.7E-05 1.6E-09 79.6 31.8 262 177-441 117-549 (582)
266 3v9f_A Two-component system se 98.6 8.8E-05 3E-09 80.4 34.3 271 168-453 258-569 (781)
267 3v64_C Agrin; beta propeller, 98.6 0.00015 5.2E-09 70.6 32.4 237 211-454 36-277 (349)
268 3sov_A LRP-6, low-density lipo 98.6 9E-05 3.1E-09 71.3 30.1 234 178-419 4-247 (318)
269 2fp8_A Strictosidine synthase; 98.6 5.2E-05 1.8E-09 72.8 28.3 231 170-409 21-312 (322)
270 1k3i_A Galactose oxidase precu 98.6 1.9E-06 6.5E-11 91.7 19.6 250 188-441 220-530 (656)
271 2xbg_A YCF48-like protein; pho 98.6 0.0005 1.7E-08 66.2 34.8 265 169-449 37-319 (327)
272 3v65_B Low-density lipoprotein 98.5 9.9E-05 3.4E-09 73.0 29.2 236 212-454 80-320 (386)
273 2p4o_A Hypothetical protein; p 98.5 0.00027 9.1E-09 67.3 30.7 219 168-396 32-276 (306)
274 3m0c_C LDL receptor, low-densi 98.5 0.0002 6.8E-09 77.3 32.7 239 172-418 389-640 (791)
275 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00094 3.2E-08 70.3 35.3 233 177-416 5-243 (628)
276 2xzh_A Clathrin heavy chain 1; 98.4 0.00096 3.3E-08 63.1 31.1 271 174-454 32-334 (365)
277 1ijq_A LDL receptor, low-densi 98.4 0.00076 2.6E-08 64.6 31.4 228 222-455 3-241 (316)
278 3tc9_A Hypothetical hydrolase; 98.4 0.00015 5.1E-09 72.8 26.8 235 209-451 137-429 (430)
279 3p5b_L Low density lipoprotein 98.4 0.00096 3.3E-08 66.2 32.3 230 221-455 84-323 (400)
280 3sov_A LRP-6, low-density lipo 98.4 0.00035 1.2E-08 67.1 27.6 229 222-455 6-241 (318)
281 4hw6_A Hypothetical protein, I 98.3 0.00032 1.1E-08 70.5 27.3 234 209-451 139-432 (433)
282 3qqz_A Putative uncharacterize 98.3 0.00081 2.8E-08 62.2 27.4 196 206-408 24-251 (255)
283 2xe4_A Oligopeptidase B; hydro 98.3 8.6E-05 2.9E-09 80.2 23.0 238 210-454 175-460 (751)
284 2xe4_A Oligopeptidase B; hydro 98.3 0.00016 5.6E-09 78.0 24.6 236 169-412 175-460 (751)
285 1n7d_A LDL receptor, low-densi 98.2 3.9E-06 1.3E-10 89.8 11.3 246 177-430 376-634 (699)
286 3qqz_A Putative uncharacterize 98.2 0.0023 7.8E-08 59.1 27.6 198 245-449 21-250 (255)
287 3kya_A Putative phosphatase; s 98.2 0.0013 4.3E-08 66.8 27.8 243 210-459 140-482 (496)
288 3amr_A 3-phytase; beta-propell 98.2 0.00056 1.9E-08 65.8 23.8 191 220-418 40-272 (355)
289 3tc9_A Hypothetical hydrolase; 98.1 0.00082 2.8E-08 67.4 25.7 231 170-408 139-428 (430)
290 4hw6_A Hypothetical protein, I 98.1 0.00093 3.2E-08 67.1 25.7 229 170-408 141-431 (433)
291 1k3i_A Galactose oxidase precu 98.1 5.6E-05 1.9E-09 80.3 17.3 260 189-454 168-499 (656)
292 3s94_A LRP-6, low-density lipo 98.1 0.0025 8.7E-08 66.9 28.9 231 179-415 10-248 (619)
293 3m0c_C LDL receptor, low-densi 98.1 0.0059 2E-07 65.8 31.9 228 222-455 397-635 (791)
294 1bpo_A Protein (clathrin); cla 98.1 0.011 3.9E-07 58.1 36.0 270 175-454 32-333 (494)
295 2ism_A Putative oxidoreductase 98.0 0.0018 6.2E-08 63.0 24.8 224 208-440 30-333 (352)
296 2xbg_A YCF48-like protein; pho 98.0 0.0071 2.4E-07 58.0 28.4 228 167-407 79-319 (327)
297 3amr_A 3-phytase; beta-propell 98.0 0.0022 7.7E-08 61.6 23.5 182 261-451 41-262 (355)
298 3a9g_A Putative uncharacterize 97.9 0.01 3.5E-07 57.6 28.1 226 208-440 28-330 (354)
299 4a0p_A LRP6, LRP-6, low-densit 97.9 0.014 4.9E-07 61.3 30.9 228 222-455 8-240 (628)
300 3s94_A LRP-6, low-density lipo 97.8 0.0075 2.6E-07 63.3 27.0 224 228-455 16-246 (619)
301 3ei3_A DNA damage-binding prot 97.8 0.065 2.2E-06 60.2 35.8 275 170-451 516-872 (1158)
302 2xzh_A Clathrin heavy chain 1; 97.8 0.0095 3.2E-07 56.4 23.8 196 170-369 109-334 (365)
303 1bpo_A Protein (clathrin); cla 97.7 0.019 6.6E-07 56.4 25.1 197 170-370 108-334 (494)
304 2p9w_A MAL S 1 allergenic prot 97.7 0.0059 2E-07 58.2 21.1 155 167-323 12-216 (334)
305 2g8s_A Glucose/sorbosone dehyd 97.7 0.027 9.4E-07 54.6 26.7 235 209-451 18-351 (353)
306 2vpj_A Kelch-like protein 12; 97.5 0.0044 1.5E-07 58.3 18.2 226 219-454 14-280 (301)
307 1n7d_A LDL receptor, low-densi 97.5 0.0003 1E-08 75.2 11.0 222 229-454 385-616 (699)
308 1xi4_A Clathrin heavy chain; a 97.5 0.0095 3.2E-07 66.8 22.2 275 170-454 27-333 (1630)
309 2p9w_A MAL S 1 allergenic prot 97.5 0.013 4.3E-07 55.9 20.0 161 288-452 9-215 (334)
310 3ii7_A Kelch-like protein 7; p 97.4 0.017 5.7E-07 54.5 20.4 223 179-411 13-273 (306)
311 2vpj_A Kelch-like protein 12; 97.4 0.009 3.1E-07 56.2 18.1 216 187-412 31-280 (301)
312 2xn4_A Kelch-like protein 2; s 97.3 0.014 4.7E-07 54.9 18.5 217 187-412 30-278 (302)
313 3kya_A Putative phosphatase; s 97.3 0.011 3.6E-07 60.0 18.4 158 292-452 139-341 (496)
314 3ii7_A Kelch-like protein 7; p 97.3 0.013 4.3E-07 55.3 17.9 225 221-454 13-274 (306)
315 2ism_A Putative oxidoreductase 97.3 0.16 5.3E-06 49.1 26.0 218 170-395 33-332 (352)
316 3sre_A PON1, serum paraoxonase 97.2 0.025 8.5E-07 54.8 19.5 163 228-395 81-284 (355)
317 2xn4_A Kelch-like protein 2; s 97.2 0.021 7.2E-07 53.7 18.5 225 220-454 16-278 (302)
318 3ott_A Two-component system se 97.2 0.33 1.1E-05 52.0 35.3 266 169-451 64-351 (758)
319 3sre_A PON1, serum paraoxonase 97.2 0.11 3.8E-06 50.2 23.5 170 268-442 81-287 (355)
320 1zgk_A Kelch-like ECH-associat 97.1 0.027 9.3E-07 53.2 17.8 177 187-369 39-242 (308)
321 3ott_A Two-component system se 97.1 0.45 1.5E-05 50.9 33.0 261 169-448 23-303 (758)
322 3pbp_A Nucleoporin NUP82; beta 97.1 0.069 2.4E-06 52.5 20.4 140 177-318 31-208 (452)
323 4asc_A Kelch repeat and BTB do 97.1 0.036 1.2E-06 52.4 18.6 183 180-369 7-223 (315)
324 2woz_A Kelch repeat and BTB do 97.1 0.072 2.5E-06 50.4 20.7 175 187-369 24-233 (318)
325 3sbq_A Nitrous-oxide reductase 97.0 0.36 1.2E-05 49.0 25.8 269 156-440 58-453 (638)
326 3das_A Putative oxidoreductase 96.9 0.33 1.1E-05 46.7 30.9 226 208-440 31-326 (347)
327 1zgk_A Kelch-like ECH-associat 96.7 0.052 1.8E-06 51.2 16.7 226 219-454 24-289 (308)
328 2be1_A Serine/threonine-protei 96.7 0.026 8.9E-07 54.2 14.4 111 221-331 11-139 (339)
329 4asc_A Kelch repeat and BTB do 96.7 0.13 4.4E-06 48.6 19.3 219 222-454 7-279 (315)
330 3ei3_A DNA damage-binding prot 96.6 1.4 4.7E-05 49.6 35.4 244 187-441 492-756 (1158)
331 3pbp_A Nucleoporin NUP82; beta 96.6 0.19 6.5E-06 49.4 19.3 142 300-449 29-209 (452)
332 2woz_A Kelch repeat and BTB do 96.4 0.19 6.6E-06 47.4 18.4 220 222-454 18-289 (318)
333 3s25_A Hypothetical 7-bladed b 96.4 0.44 1.5E-05 44.8 20.5 165 270-455 88-258 (302)
334 2be1_A Serine/threonine-protei 96.4 0.013 4.4E-07 56.4 9.5 199 175-381 7-246 (339)
335 3s25_A Hypothetical 7-bladed b 96.3 0.78 2.7E-05 43.1 29.4 238 186-452 36-293 (302)
336 2uvk_A YJHT; unknown function, 96.2 0.47 1.6E-05 45.4 20.2 91 177-269 19-128 (357)
337 2uvk_A YJHT; unknown function, 96.2 0.054 1.8E-06 52.2 13.4 233 219-458 19-348 (357)
338 1xi4_A Clathrin heavy chain; a 96.1 0.14 4.9E-06 57.6 17.2 195 170-368 108-332 (1630)
339 1cru_A Protein (soluble quinop 96.1 1.4 4.6E-05 44.1 30.2 103 209-311 27-163 (454)
340 3a9g_A Putative uncharacterize 96.0 1.2 4E-05 42.9 23.9 199 250-452 28-296 (354)
341 1tl2_A L10, protein (tachylect 95.8 0.43 1.5E-05 42.6 15.6 145 292-451 41-207 (236)
342 2zwa_A Leucine carboxyl methyl 95.8 0.24 8.3E-06 52.6 16.9 180 187-370 412-638 (695)
343 2zwa_A Leucine carboxyl methyl 95.7 0.65 2.2E-05 49.2 19.8 149 218-369 396-579 (695)
344 1cru_A Protein (soluble quinop 95.6 1.2 4E-05 44.6 20.4 105 291-395 26-161 (454)
345 3das_A Putative oxidoreductase 95.4 1.4 4.9E-05 42.2 19.4 150 287-439 27-219 (347)
346 3sbq_A Nitrous-oxide reductase 95.2 3.1 0.00011 42.3 23.5 229 222-453 72-409 (638)
347 3qhy_B Beta-lactamase inhibito 94.3 2.6 8.8E-05 39.0 17.5 224 209-454 24-248 (282)
348 1tl2_A L10, protein (tachylect 94.0 1.2 4.1E-05 39.7 13.4 132 303-446 4-157 (236)
349 2g8s_A Glucose/sorbosone dehyd 93.5 5.4 0.00018 38.1 24.6 220 170-394 20-339 (353)
350 3kci_A Probable E3 ubiquitin-p 91.8 9.7 0.00033 36.8 22.4 262 178-452 11-345 (389)
351 3qhy_B Beta-lactamase inhibito 91.5 8.5 0.00029 35.4 17.6 238 170-432 26-264 (282)
352 3b7f_A Glycosyl hydrolase, BNR 91.5 10 0.00035 36.4 29.3 260 180-446 24-366 (394)
353 3no0_A DNA gyrase subunit A; D 87.9 16 0.00056 33.4 17.7 154 165-321 22-195 (276)
354 2wg3_C Hedgehog-interacting pr 86.7 27 0.00091 34.7 29.5 237 209-451 14-370 (463)
355 3mvd_K Regulator of chromosome 85.1 29 0.00099 33.7 30.9 229 209-452 75-374 (423)
356 4hvt_A Ritya.17583.B, post-pro 84.1 45 0.0016 35.1 19.4 228 216-451 137-429 (711)
357 3kci_A Probable E3 ubiquitin-p 83.5 32 0.0011 33.0 27.7 232 170-410 55-345 (389)
358 2wg3_C Hedgehog-interacting pr 82.6 35 0.0012 33.8 15.7 105 334-441 14-158 (463)
359 2rqw_B 24-meric peptide from s 81.7 0.72 2.5E-05 25.2 1.6 12 45-56 4-15 (26)
360 4gq2_M Nucleoporin NUP120; bet 79.1 79 0.0027 34.5 20.8 78 252-329 173-273 (950)
361 3uc1_A DNA gyrase subunit A; D 77.3 48 0.0016 31.1 21.6 155 166-321 41-227 (327)
362 4d9s_A UVB-resistance protein 75.4 60 0.0021 31.2 33.2 268 170-452 18-357 (406)
363 4gq2_M Nucleoporin NUP120; bet 74.5 23 0.0008 38.7 12.5 39 209-247 236-274 (950)
364 1suu_A DNA gyrase subunit A; t 70.6 68 0.0023 29.7 24.9 229 217-452 5-283 (312)
365 1a12_A RCC1, regulator of chro 70.1 80 0.0027 30.4 26.2 224 170-409 61-364 (413)
366 4fhn_B Nucleoporin NUP120; pro 67.9 97 0.0033 34.6 15.9 37 294-330 240-276 (1139)
367 4fhn_B Nucleoporin NUP120; pro 67.7 20 0.00068 40.1 10.3 38 210-247 239-276 (1139)
368 3mvd_K Regulator of chromosome 67.1 93 0.0032 30.0 29.7 229 170-410 77-374 (423)
369 3uc1_A DNA gyrase subunit A; D 66.5 86 0.0029 29.3 22.4 188 260-453 53-280 (327)
370 1zi0_A DNA gyrase subunit A; b 65.5 85 0.0029 29.0 21.4 156 165-321 40-225 (307)
371 3no0_A DNA gyrase subunit A; D 62.8 90 0.0031 28.3 18.0 157 291-454 67-248 (276)
372 1suu_A DNA gyrase subunit A; t 60.3 1.1E+02 0.0037 28.4 21.9 187 260-454 8-233 (312)
373 1zi0_A DNA gyrase subunit A; b 58.2 1.2E+02 0.0039 28.1 25.9 230 219-454 2-279 (307)
374 3of7_A Regulator of chromosome 55.6 1.6E+02 0.0054 28.9 25.7 190 168-366 67-340 (473)
375 3zwu_A Alkaline phosphatase PH 55.5 52 0.0018 33.7 9.9 62 378-439 476-548 (592)
376 4a9v_A PHOX; hydrolase, beta-p 54.9 39 0.0013 34.5 8.6 58 170-227 478-549 (592)
377 3l6v_A GYRA, DNA gyrase subuni 54.7 1.5E+02 0.0051 28.3 23.6 156 166-321 45-264 (370)
378 1wp5_A Topoisomerase IV; broke 54.4 1.4E+02 0.0047 27.8 21.7 156 165-321 37-224 (323)
379 4a9v_A PHOX; hydrolase, beta-p 53.7 60 0.002 33.1 9.7 62 378-439 476-548 (592)
380 1zvt_A Topoisomerase IV subuni 52.9 66 0.0023 28.9 9.2 115 165-279 31-163 (256)
381 3of7_A Regulator of chromosome 51.9 1.8E+02 0.0062 28.4 23.5 186 251-452 148-405 (473)
382 3f7f_A Nucleoporin NUP120; nuc 51.2 37 0.0013 35.7 7.9 71 334-409 222-304 (729)
383 2zux_A YESW protein; beta-prop 49.3 2.3E+02 0.0077 28.8 29.2 246 189-455 231-535 (591)
384 3f7f_A Nucleoporin NUP120; nuc 48.4 1.1E+02 0.0036 32.2 10.9 37 210-248 223-259 (729)
385 1wp5_A Topoisomerase IV; broke 47.9 1.7E+02 0.006 27.1 23.5 231 218-454 3-279 (323)
386 4d9s_A UVB-resistance protein 47.0 2E+02 0.0068 27.5 28.1 190 169-367 69-305 (406)
387 3zwu_A Alkaline phosphatase PH 44.3 55 0.0019 33.5 8.0 56 171-226 479-548 (592)
388 3l6v_A GYRA, DNA gyrase subuni 40.8 2.4E+02 0.0083 26.7 25.8 231 216-452 3-316 (370)
389 3b7f_A Glycosyl hydrolase, BNR 36.8 2.7E+02 0.0092 26.1 26.8 255 168-429 55-390 (394)
390 3q6k_A 43.2 kDa salivary prote 35.2 3E+02 0.01 26.2 24.3 180 231-439 124-341 (381)
391 3hx6_A Type 4 fimbrial biogene 33.4 3.9E+02 0.013 27.0 17.6 152 303-455 85-287 (570)
392 3q6k_A 43.2 kDa salivary prote 30.7 3.6E+02 0.012 25.7 25.4 182 188-394 124-340 (381)
393 1a12_A RCC1, regulator of chro 29.7 3.7E+02 0.013 25.5 31.1 226 208-452 58-365 (413)
394 1zvt_A Topoisomerase IV subuni 28.0 3.2E+02 0.011 24.2 11.2 143 305-454 4-165 (256)
395 3mez_B Mannose-specific lectin 24.1 2.4E+02 0.008 21.4 7.0 15 262-276 91-105 (113)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-61 Score=491.98 Aligned_cols=409 Identities=42% Similarity=0.737 Sum_probs=295.3
Q ss_pred CCCCCCCcc--cccccCCCCCCCCccCCCCCCChHHHHHHHHHHhCCCCCCCccCCCCCCCCCccccccCCCcCCCCCCC
Q 011971 51 PSRSSSNFD--LFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHSLS 128 (474)
Q Consensus 51 p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (474)
|+|++|||+ .|.+....+ +. +...+...+|++++.+++.+... ...+||.|+++++..+....
T Consensus 2 p~r~~~~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~il~~~~~~~~~~~~~~ 66 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQ--PE---NSQTPTKKEHQKAWALNLNGFDV----------EEAKILRLSGKPQNAPEGYQ 66 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCC--cc---cccCcchHHHHHHHHhhcccccc----------ccceEEeccCCCCCCCcccc
Confidence 899999995 476653221 11 22345677899999888876332 24589999887654432111
Q ss_pred CCccCCCcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEec-CC
Q 011971 129 PFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GI 207 (474)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~ 207 (474)
..............++++..|+||..|+++||||.+.+|||+++|+|+++++||+|.|++|+|||+.++++.+++.+ +|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~ 146 (420)
T 4gga_A 67 NRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQP 146 (420)
T ss_dssp -------------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCST
T ss_pred cCcceecccccCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCC
Confidence 00000001111345678889999999999999999999999999999999999999999999999999999988876 67
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
...|++|+|+|+|++||+|+.||.|+|||+++++.+..+.+|...+.+++|++.+|++|+.|+.+++||.......+..+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999888788889
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc----ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
.+|...++.+.|+++++++++++.|+.|++||..+++ .+.....|...|.+++|+|++..++++++|+.|++|++|
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 9999999999999999999999999999999998764 456777899999999999999999999888899999999
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
|+.+++++..+.....+.++.|+++++.+++++|+.|+.|+|||+++++++.++.+|.+.|++|+|+|||++|+||+.||
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~ 386 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCC---CcccCCcCCccCC
Q 011971 444 TLRFWNVFPSPKSQNTDS---EIGASSLGRTTIR 474 (474)
Q Consensus 444 ~I~iW~l~~~~~~~~~~~---~~~~~s~~r~~ir 474 (474)
+|+|||++........+. .....++-++.||
T Consensus 387 tvriWdv~~~~~~~~~~~~~~~~~~~s~~~~gir 420 (420)
T 4gga_A 387 TLRLWRCFELDPARRREREKASAAKSSLIHQGIR 420 (420)
T ss_dssp EEEEECCSCSSCC---------------------
T ss_pred eEEEEECCCCCccchhhhccCCccccccCCCCCC
Confidence 999999998765544332 2233455556665
No 2
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-56 Score=448.64 Aligned_cols=384 Identities=39% Similarity=0.704 Sum_probs=301.9
Q ss_pred CcccCCCCCCCcccccccCCCCCCCCccCCCCCCChHHHHHHHHHHhCCCCCCCccCCCCCCCCCccccccCCCcCCCCC
Q 011971 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHS 126 (474)
Q Consensus 47 dr~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (474)
|||||+|+.+|++.|.++... ....|+..|++.+... .+.|||.|...++....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~------------~~~r~l~~~~~~~~~~~~ 55 (401)
T 4aez_A 1 DRFIPSRPNTANAFVNSISSD-------------VPFDYSESVAEACGFD------------LNTRVLAFKLDAPEAKKP 55 (401)
T ss_dssp --------------------------------------------------------------CCEEEEEECSCCCCCCCC
T ss_pred CCcCCCchhhhHHHHhhcCCc-------------chHHHHHHHHHHcCCC------------ccCcEEeeCCCCCCCcCc
Confidence 899999997777788885321 2347999999998651 256999998876544322
Q ss_pred CCCCccCCCcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecC
Q 011971 127 LSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG 206 (474)
Q Consensus 127 ~~p~~~~~~~~~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~ 206 (474)
. ++.... .........+..|+++..|.++++++.+.+++++++++|+++.+++++.++.|++||+.+++....+...
T Consensus 56 ~-~~~~~~--~~~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~ 132 (401)
T 4aez_A 56 V-DLRTQH--NRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD 132 (401)
T ss_dssp C-C-------------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred c-cchhhc--ccccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC
Confidence 2 111111 0111222245679999999999999999999999999999999999999999999999999999888877
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEee
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+++.|++|+.||.|++||++........
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999976667888
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
+.+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++..++++++|+.|+.|++||+.
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--eEEEcCCCccEEEEEECCCCCEEEEEeCCCc
Q 011971 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK--LATLTGHTFRVLYLAISPDGQTIVTGAGDET 444 (474)
Q Consensus 367 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~ 444 (474)
+++.+..+.+...+.+++|+|+++++++++|+.+|.|++||+.++.. ...+.+|...|.+++|+|+|.+|++++.||.
T Consensus 293 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 293 TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 99999999999999999999999999998888999999999998654 4456799999999999999999999999999
Q ss_pred EEEEeCCCCCCCCC
Q 011971 445 LRFWNVFPSPKSQN 458 (474)
Q Consensus 445 I~iW~l~~~~~~~~ 458 (474)
|++|++..+.....
T Consensus 373 i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 373 LKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEECCC------
T ss_pred EEEEECCCCccccc
Confidence 99999998876554
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=392.47 Aligned_cols=310 Identities=50% Similarity=0.908 Sum_probs=289.3
Q ss_pred CCCCCCCCCCCcccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEE
Q 011971 145 VKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHL 223 (474)
Q Consensus 145 ~~~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~l 223 (474)
+|..|.||..|+|+||||++.+|||+++|+||++++||+|.|++|+|||+.+++..+.+.. +|...|++++|+|++++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 5677999999999999999999999999999999999999999999999999999888875 678899999999999999
Q ss_pred EEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC
Q 011971 224 AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (474)
Q Consensus 224 a~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~ 303 (474)
++|+.||+|+|||+++++.+..+.+|...+.++.+.+..+++|+.++.+.+|+.......+..+.+|...+..+.+++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999998887788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcc----eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC
Q 011971 304 RELASGGNDNRLFVWNQHSTQP----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379 (474)
Q Consensus 304 ~~lasg~~Dg~v~iwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~ 379 (474)
++|++++.|+.|++||+++++. ......+...|.+++++|++..++..++|..++.|++||...........+...
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 9999999999999999987653 455567889999999999999888776677899999999999999999889999
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+..+.|+++++.+++++|+.|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|++||+++..
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999878899999999999999999999999999999999999999999999999999998654
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-42 Score=339.13 Aligned_cols=275 Identities=20% Similarity=0.369 Sum_probs=250.2
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----e
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----K 241 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----~ 241 (474)
-.+.+++|++ +. +++++.|+.|+|||..+++....+. .|...|.+++|+|+|++|++|+.|+.|++||+.+. +
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 3489999998 44 5555679999999999999887775 68889999999999999999999999999999765 4
Q ss_pred EEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 242 RVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
....+.+|...|.++.|. .+.+++++.|+.|++||++++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 667788999999999997 4789999999999999998876 57788999999999999999999999999999999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEEEEe
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g 397 (474)
++++.+..+..|...|.+++|+|++. ++++|+ .|+.|++||+++++.+..+.+. ..|.+++|+|++++|++ |
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g 288 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--G 288 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--E
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE--E
Confidence 99999999999999999999999987 555665 8999999999999888777644 36999999999999999 8
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
+.|+.|++||+.+++.+..+.+|...|.+++|+|+|.+|++|+.||+|++||
T Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8999999999999999999999999999999999999999999999999997
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-43 Score=353.51 Aligned_cols=277 Identities=23% Similarity=0.390 Sum_probs=255.1
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
..+++++|+| +. +++++.|+.|+|||+.+++....+. +|.+.|.+++|+|+|++|++|+.||+|+|||+.+++.+..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence 4599999998 44 5555578999999999999887775 7999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+.+|...|.+++|++ ++|++|+.|+.|++||++++. .+..+.+|...|.++.|++++.+|++|+.|+.|++||+.++
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999984 799999999999999999876 67888999999999999999999999999999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCC-------------------CcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEE
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHL-------------------HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNL 383 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~-------------------~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l 383 (474)
+....+..|...|.+++|+|++ ..++++|+ .|+.|++||+.++.++..+. +...|.++
T Consensus 267 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v 344 (410)
T 1vyh_C 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344 (410)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEE
Confidence 9999999999999999999973 23677776 89999999999999888776 56779999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++|++
T Consensus 345 ~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 345 LFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999 889999999999999999999999999999999999999999999999999986
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=339.25 Aligned_cols=280 Identities=19% Similarity=0.309 Sum_probs=253.3
Q ss_pred CCcceeeeeCCCC------cEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 166 DDFYLNLVDWSSH------NVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 166 ~d~~v~~l~~s~~------~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
.+-.|.+++|++. .+++++.|+.|+||+..+++......+ +|...|.+++|++++.++++|+.||+|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3456999999862 366677799999999987765444333 899999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+++.+..+..|...+.+++|++ .+|++|+.||.|++||++... ....+..|...|.+++|+|++++|++|+.|+.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence 9999999999999999999984 799999999999999999877 4667788999999999999999999999999999
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEE
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~ 395 (474)
+||+++++.+..+..|...|.+++|+|++. +|++|+ .|+.|++||+++++.+..+. +...|.+++|+|+++.|++
T Consensus 190 iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s- 265 (321)
T 3ow8_A 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS- 265 (321)
T ss_dssp EEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred EEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE-
Confidence 999999999999999999999999999987 666665 89999999999998888776 5677999999999999998
Q ss_pred EecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 396 HGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
++.|+.|+|||+.+++++.++.+|...|.+++|+|+|.+|++++.||+|++||+.
T Consensus 266 -~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 -SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 7899999999999999999999999999999999999999999999999999973
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.6e-40 Score=327.11 Aligned_cols=275 Identities=21% Similarity=0.374 Sum_probs=246.1
Q ss_pred cceeeeeCCC-C-cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-----
Q 011971 168 FYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----- 240 (474)
Q Consensus 168 ~~v~~l~~s~-~-~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----- 240 (474)
-.|++++|++ + .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence 3499999998 3 45666679999999999998887775 57789999999999999999999999999998643
Q ss_pred -eEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec--CCCEEEEEeCCCcE
Q 011971 241 -KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRL 315 (474)
Q Consensus 241 -~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v 315 (474)
.....+.+|...|.+++|++ ..|++++.|++|++||++++. .+..+.+|...|.+++|+| ++++|++|+.||.|
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 34556778999999999984 689999999999999999876 6788899999999999987 57899999999999
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeEEEEEcCCCCeE
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNEL 392 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l 392 (474)
++||+++++.+..+..|...|.+++|+|++. ++++|+ .|+.|++||+++++.+..+... ..+.+++|+|++++|
T Consensus 223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 9999999999999999999999999999987 566665 8999999999998877666533 368999999999999
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|||++|++|+.||+|++|+
T Consensus 300 ~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99 88999999999999999999999999999999999999999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.9e-40 Score=321.25 Aligned_cols=278 Identities=23% Similarity=0.353 Sum_probs=243.3
Q ss_pred CcceeeeeCCC-C-c-EEEEEcCCeEEEEeCCCCC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 167 DFYLNLVDWSS-H-N-VLAVGLGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 167 d~~v~~l~~s~-~-~-~la~~~d~~V~lwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
.-.|++++|++ + + +++++.|+.|++|++.+.. ....+. +|...|.+++|+|+|.+|++|+.||+|+|||+.
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 34589999997 2 4 5566679999999986432 223332 899999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC------CCEEEEEe
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD------NRELASGG 310 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd------~~~lasg~ 310 (474)
+++.+..+.+|...|.+++|++ .+|++|+.|++|++||++.. .+..+.+|...|.++.|+|. +..|++|+
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999984 79999999999999999743 57788899999999999985 45899999
Q ss_pred CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCC
Q 011971 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~ 390 (474)
.|+.|++||+++.+....+.+|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+..+.....|.+++|+|++.
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999987 566665 89999999999999999999889999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceeEEEcC--------CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKLATLTG--------HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.+++ +. ++.+++|++.....+..+.. |...|.+++|+|||++|++|+.||+|++|++.+.
T Consensus 251 ~la~--~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 251 WLAA--AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEE--EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEE--Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9887 43 45699999998877776643 4567999999999999999999999999998653
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.2e-41 Score=331.37 Aligned_cols=281 Identities=17% Similarity=0.206 Sum_probs=232.7
Q ss_pred cceeeeeCCC-CcEEEEEcCCeEEEEeCCCC----------CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSS----------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~----------~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
-.+.++.|++ +.+|+++.++++++||.... .........+...|.+++|+|++ .|++|+.||+|+|||
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 3589999999 78888888888888873210 00001111346789999999985 688999999999999
Q ss_pred CCCCeEEEE----ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEE
Q 011971 237 ASRCKRVRT----MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASG 309 (474)
Q Consensus 237 ~~~~~~~~~----~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg 309 (474)
+.+++.+.. +.+|...|.+++|+ +++|++|+.|++|++||+.++. .+..+.+|...|.+++|++++. +|++|
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred ccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeee
Confidence 998765433 45899999999998 4799999999999999999876 6888999999999999999874 78999
Q ss_pred eCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEc
Q 011971 310 GNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWS 386 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 386 (474)
+.|++|++||+++++....+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. +...|.+++|+
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs 266 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS 266 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEEEEC
T ss_pred ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 999999999999999888774 45667999999998888999886 89999999999999988877 56789999999
Q ss_pred CCCC-eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCC
Q 011971 387 KNVN-ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 387 ~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|++. +|++ |+.|+.|+|||+.+++.+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++|++...+.
T Consensus 267 p~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 267 PHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred cCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9985 5666 789999999999888654 5789999999999999986 567899999999999987543
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.8e-41 Score=334.58 Aligned_cols=280 Identities=21% Similarity=0.374 Sum_probs=245.6
Q ss_pred cceeeeeCCC-C-cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe----
Q 011971 168 FYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---- 241 (474)
Q Consensus 168 ~~v~~l~~s~-~-~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~---- 241 (474)
..|++++|+| + .+++++.|+.|+|||+.+++....+. .|...|.+++|+|+|++|++|+.|+.|+|||+.+..
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 4599999998 3 46666679999999999998887775 688999999999999999999999999999986532
Q ss_pred ---EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeee-----cCcCCCEEEEEEec-CCCEEEEE
Q 011971 242 ---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEVCGLKWSY-DNRELASG 309 (474)
Q Consensus 242 ---~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~sp-d~~~lasg 309 (474)
....+.+|...|.++.|.+ ..|++|+.|++|++||++++.. +..+ .+|...|.++.|++ ++++|++|
T Consensus 146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 3456789999999999974 5799999999999999998773 4444 67999999999987 88999999
Q ss_pred eCCCcEEEEECC-CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------CCe
Q 011971 310 GNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------SQV 380 (474)
Q Consensus 310 ~~Dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------~~v 380 (474)
+.|++|++||++ ..+.+..+.+|...|.+++|+|++. ++++|+ .|++|++||+++++.+..+... ..|
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred ECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCce
Confidence 999999999998 4577888999999999999999987 566665 8999999999999988776532 238
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE----cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL----TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+++|+|++++|++ |+.||.|++||+..++.+..+ .+|.+.|.+++|+|||.+|++|+.|++|++|++....
T Consensus 302 ~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 302 TSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 89999999999999 889999999999999988887 6899999999999999999999999999999997653
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-40 Score=323.07 Aligned_cols=285 Identities=21% Similarity=0.369 Sum_probs=234.7
Q ss_pred ceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC--eE
Q 011971 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKL--CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KR 242 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~--~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~--~~ 242 (474)
.+.+++|+| +. +++++.|+.|+|||..++..... ...+|...|.+++|+|+|++|++|+.|+.|+|||+..+ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 588999998 44 45556789999999988764432 22379999999999999999999999999999998876 46
Q ss_pred EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
+..+.+|...|.+++|++ ++|++|+.|+.|++||++... ..+..+.+|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 788999999999999984 799999999999999998764 2456788999999999999999999999999999999
Q ss_pred ECCCCc--ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC---------------ceeeeec--CCCC
Q 011971 319 NQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---------------THLSCMD--TGSQ 379 (474)
Q Consensus 319 d~~~~~--~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~---------------~~~~~~~--~~~~ 379 (474)
|.+.++ ....+.+|...|.+++|+|++. +|++++ .|+.|++||.... +++..+. +...
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 998775 4567889999999999999987 556665 8999999996332 1222222 5667
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----e-----eEEEcCCCccEEEEEECCCC-CEEEEEeCCCcEEEEe
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS----K-----LATLTGHTFRVLYLAISPDG-QTIVTGAGDETLRFWN 449 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~-----~~~l~~h~~~V~~l~~spdg-~~l~t~s~Dg~I~iW~ 449 (474)
|.+++|++++..|++ ++.|+.|++|+..... . .....+|...|.+++|+|++ .+|++|+.||+|++|+
T Consensus 255 v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 255 IYDIAWCQLTGALAT--ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEEECTTTCCEEE--EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEEecCCCEEEE--EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 999999999999999 7789999999986542 1 12235899999999999987 4999999999999999
Q ss_pred CCCCCCCCC
Q 011971 450 VFPSPKSQN 458 (474)
Q Consensus 450 l~~~~~~~~ 458 (474)
+..+.+...
T Consensus 333 ~~~~~~~~~ 341 (345)
T 3fm0_A 333 YQRPEGLHH 341 (345)
T ss_dssp ECC------
T ss_pred ecCCCCccc
Confidence 988776543
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-39 Score=313.79 Aligned_cols=278 Identities=18% Similarity=0.290 Sum_probs=245.3
Q ss_pred ceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.|.+++|+| +. +++++.|+.|+|||+.+++....+. .|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 489999999 44 5555679999999999998877775 68889999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~ 323 (474)
.+|...|.+++|++ .+|++|+.|++|++||++........+.+|...|.+++|+| ++..|++|+.|++|++||+++.
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999985 69999999999999999987666778899999999999999 6789999999999999999988
Q ss_pred cceEEEc-cCCCcEEEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 324 QPVLKYC-EHTAAVKAIAWSPHL-HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 324 ~~~~~~~-~h~~~V~~l~~sp~~-~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
.....+. .|...+..++|+|.. ..++++|+ .|+.|++||+++++++..+. +...|..++|+|++..|++ |+.|
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~D 249 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GSED 249 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EETT
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE--EcCC
Confidence 7766664 466889999998842 34677766 89999999999999988887 5678999999999999998 8899
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEEEEECCCCC--EEEEEeCCCcEEEEeCCC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ--TIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~t~s~Dg~I~iW~l~~ 452 (474)
+.|++||+.+++.+..+..|...+.+++|+|++. +|++|+.| .+.+|++..
T Consensus 250 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp SCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred CeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999999999999999999999875 57777655 577888765
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.2e-40 Score=327.05 Aligned_cols=284 Identities=17% Similarity=0.260 Sum_probs=229.9
Q ss_pred CcceeeeeCCC-CcEEEEEc-------CCeEEEEeCCCCCEEEEE---ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 011971 167 DFYLNLVDWSS-HNVLAVGL-------GNCVYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW 235 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~-------d~~V~lwd~~~~~~~~~~---~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iw 235 (474)
+..|++++|+| +.+|+++. |+.|++|+..++...... ..+|...|++++|+|++. +++++.||+|+||
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lW 120 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELW 120 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEe
Confidence 45699999999 67777765 568999998776543221 126788999999999986 5567889999999
Q ss_pred cCCCCeEEE----EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEE
Q 011971 236 DASRCKRVR----TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELAS 308 (474)
Q Consensus 236 d~~~~~~~~----~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~las 308 (474)
|+.+++... ...+|...|.+++|++ .+|++|+.|+.|++||++++. .+..+.+|...|.+++|++++. ++++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeee
Confidence 998876543 3458999999999984 799999999999999999876 6788899999999999999875 7899
Q ss_pred EeCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEE
Q 011971 309 GGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVW 385 (474)
Q Consensus 309 g~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 385 (474)
++.|+.|++||+++++++..+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. +...|.+++|
T Consensus 200 ~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 9999999999999988766543 57788999999999888999886 89999999999999888776 5678999999
Q ss_pred cCCCC-eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 386 SKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 386 s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
+|++. +|++ |+.|+.|+|||+.+++.+..+ +|...|++|+|+| |+.+|++++.||+|++|++....+..
T Consensus 278 sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 278 SYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp CSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred cCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 99985 5666 779999999999998877654 8999999999998 89999999999999999997655443
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-38 Score=308.92 Aligned_cols=278 Identities=22% Similarity=0.383 Sum_probs=243.7
Q ss_pred CcceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
...+++++|++ ++ +++++.|+.|++|+..+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 34599999998 45 4455568999999999999887764 789999999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+.+|...|.+++|++ ++|++|+.|+.|++||+++.. .+..+..|...|.+++|+|++++|++|+.||.|++||+++
T Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 9999999999999984 799999999999999999876 5778889999999999999999999999999999999999
Q ss_pred CcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-C--eEEEEE-cCCCCeEEEEEe
Q 011971 323 TQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-Q--VCNLVW-SKNVNELVSTHG 397 (474)
Q Consensus 323 ~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-~--v~~l~~-s~~~~~l~~~~g 397 (474)
++.+..+. .+...+..++|+|++..+++ ++ .|+.|++||+.+++.+..+.... . .....+ .+++.+|++ |
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g 255 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILA-AT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS--G 255 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSSEEEE-EE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE--C
T ss_pred CceeeEEeccCCCceEEEEECCCCCEEEE-Ec--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE--E
Confidence 98877764 46678999999999985555 44 79999999999999888776332 2 222334 456777777 8
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe--CCCcEEEEeCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA--GDETLRFWNVF 451 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s--~Dg~I~iW~l~ 451 (474)
+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8999999999999999999999999999999999999999987 69999999975
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.9e-39 Score=322.29 Aligned_cols=280 Identities=22% Similarity=0.339 Sum_probs=241.2
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecC-----------------CCCCEEEEEEcCCCCEEEEEeC
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG-----------------IDDSVCSVGWANRNTHLAVGTS 228 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~-----------------~~~~V~~v~~sp~g~~la~gs~ 228 (474)
.-.+++++|++ +.+|+++.++.++||++.+++....+... +...|.+++|+|+|++|++|+.
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 44589999999 78999999999999999999887665321 1224999999999999999999
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCE
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRE 305 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 305 (474)
||.|+|||+.+++.+..+.+|...|.+++|+ +..|++|+.|++|++||++++. ....+ .+...+.+++|+| ++++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~ 221 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTL-SIEDGVTTVAVSPGDGKY 221 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECSTTCCE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEE-EcCCCcEEEEEECCCCCE
Confidence 9999999999999999999999999999998 4799999999999999998876 33333 3567899999999 8999
Q ss_pred EEEEeCCCcEEEEECCCCcceEEE-------ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc---------
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKY-------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--------- 369 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--------- 369 (474)
|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++. ++++|+ .|+.|++||+.+..
T Consensus 222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCCcccccCCC
Confidence 999999999999999998877766 57899999999999987 555655 89999999997643
Q ss_pred ---eeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC------CCCEEEEE
Q 011971 370 ---HLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP------DGQTIVTG 439 (474)
Q Consensus 370 ---~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp------dg~~l~t~ 439 (474)
+...+ .+...|.+++|++++.+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++|
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 22233 36677999999999999998 88999999999999999999999999999999986 68899999
Q ss_pred eCCCcEEEEeCCCC
Q 011971 440 AGDETLRFWNVFPS 453 (474)
Q Consensus 440 s~Dg~I~iW~l~~~ 453 (474)
+.||+|++|++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998643
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-39 Score=316.00 Aligned_cols=280 Identities=21% Similarity=0.300 Sum_probs=226.2
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCC--EEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC------
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSK--VTKLCDLG-IDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS------ 238 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~--~~~~~~~~-~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~------ 238 (474)
-.+.+++|+++.+++++.|+.|+|||+.++. ....+..+ |...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence 3588999999866666779999999998764 33344234 89999999999999999999999999999984
Q ss_pred -CCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEEEEEEecCCCEEEEEeCC
Q 011971 239 -RCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (474)
Q Consensus 239 -~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spd~~~lasg~~D 312 (474)
..+.+..+.+|...|.+++|++ .+|++|+.|++|++||++... ..+..+.+|...|.+++|+|++.+|++|+.|
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 3456788899999999999984 799999999999999995432 3567788999999999999999999999999
Q ss_pred CcEEEEECCCC--cceEEEccCCCcEEEEEECCCCC-cEEEEecCCCCCeEEEEECCCC--------ceeeeec--CCCC
Q 011971 313 NRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTN--------THLSCMD--TGSQ 379 (474)
Q Consensus 313 g~v~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~-~ll~sg~Gt~d~~I~iwd~~~~--------~~~~~~~--~~~~ 379 (474)
++|++||..++ +++..+.+|...|.+++|+|++. .++++|+ .|++|++||+..+ .+...+. +...
T Consensus 175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 99999998776 67788899999999999999843 3677766 8999999998764 2333333 5678
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eeEE-EcCCCc-cEEEEEECC--CCCEEEEEeCCCcEEEEeCCC
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS--KLAT-LTGHTF-RVLYLAISP--DGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~-l~~h~~-~V~~l~~sp--dg~~l~t~s~Dg~I~iW~l~~ 452 (474)
|.+++|++++ .|++ ++.|+.|+||+..+++ .+.. +.+|.. .|.+++|+| ++.+|++|+.||+|++|++..
T Consensus 253 v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 253 VYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999665 6776 7799999999998763 3333 357887 899999999 789999999999999999864
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6e-39 Score=311.24 Aligned_cols=247 Identities=21% Similarity=0.316 Sum_probs=225.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|++++|++|+.||.|+|||+++++.+..+..|...|.+++|+ +++|++|+.|+.|++||+.+++ .
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-~ 89 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-K 89 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-E
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-E
Confidence 789999999999999999999999999999999999999999999999999997 4899999999999999999877 5
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
+..+.+|...|.+++|+|++.+|++|+.|++|++||++++ .....+.+|...|.+++|+|++..++++|+ .|+.|++
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs--~D~~v~i 167 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDRTVKV 167 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE--TTSEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe--CCCeEEE
Confidence 7788999999999999999999999999999999999877 455678899999999999997666888876 8999999
Q ss_pred EECCCCceeeeec--CCCCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 363 WNTTTNTHLSCMD--TGSQVCNLVWSK--NVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 363 wd~~~~~~~~~~~--~~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
||+.++.....+. +...+..+.|++ ++.+|++ |+.|+.|++||+.+++++..+.+|...|.+++|+|++.+|++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence 9998877665554 346789999987 6678888 889999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~~ 457 (474)
|+.||+|++||+.+....+
T Consensus 246 ~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 246 GSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EETTSCEEEEETTTCCEEE
T ss_pred EcCCCeEEEEECCCCceee
Confidence 9999999999998776443
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-38 Score=311.15 Aligned_cols=276 Identities=20% Similarity=0.297 Sum_probs=230.8
Q ss_pred cceeeeeC-----CC--C-cEEEEEcCCeEEEEeCCCCC-------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 011971 168 FYLNLVDW-----SS--H-NVLAVGLGNCVYLWNACSSK-------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKV 232 (474)
Q Consensus 168 ~~v~~l~~-----s~--~-~~la~~~d~~V~lwd~~~~~-------~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I 232 (474)
-.|++++| ++ + .+++++.|+.|+|||+.+.+ ....+ .+|...|.+++|+|++.+|++|+.||+|
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTL 100 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 35888888 43 3 35566678999999987543 22223 3899999999999999999999999999
Q ss_pred EEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeee---cCcCCCEEEEEEecCC----
Q 011971 233 QIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDN---- 303 (474)
Q Consensus 233 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spd~---- 303 (474)
+|||+.+++.+..+.+|...|.+++|++ .+|++|+.|+.|++||+.... .... .+|...|.+++|+|++
T Consensus 101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeecccccccc
Confidence 9999999999999999999999999984 799999999999999997432 2222 3789999999999987
Q ss_pred ------CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecC
Q 011971 304 ------RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDT 376 (474)
Q Consensus 304 ------~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~~ 376 (474)
.+|++|+.|+.|++||. ..+....+..|...|.+++|+|++. +|++|+ .|+.|++||+. .......+..
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCSEEEEC
T ss_pred ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccceeecC
Confidence 78999999999999994 5667778889999999999999987 556655 89999999994 4555566667
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE--EEc-----------CCCccEEEEEECCCCCEEEEEeCCC
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA--TLT-----------GHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~-----------~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
+..|.+++|+|++..+++ | .|+.|++|++.+.+... .+. +|...|.+++|+|+|++|++|+.||
T Consensus 255 ~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp SSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred CCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 778999999999987765 4 57889999998765433 443 6888999999999999999999999
Q ss_pred cEEEEeCCCC
Q 011971 444 TLRFWNVFPS 453 (474)
Q Consensus 444 ~I~iW~l~~~ 453 (474)
+|++|++.++
T Consensus 332 ~v~~w~~~~g 341 (343)
T 2xzm_R 332 VIRTFSFETS 341 (343)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEcc
Confidence 9999998653
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-38 Score=335.60 Aligned_cols=277 Identities=19% Similarity=0.307 Sum_probs=242.3
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC--eEEEEe
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTM 246 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~--~~~~~~ 246 (474)
...++|+| ++.|+.+.++.|+||++.+++....+. +|...|++++|+|+|++||+|+.||+|+|||+.++ .....+
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 56788998 678888888999999999888777764 89999999999999999999999999999998643 456678
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCC----CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEEeCCCcEEEEE
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRD----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLFVWN 319 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg~~Dg~v~iwd 319 (474)
.+|...|.+++|++ ..|++++.+ +.|++||.. . ....+.+|...|.+++|+|++. .|++|+.|++|++||
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd 176 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--T-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--C-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--C-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 89999999999985 688888765 478888753 3 3567889999999999999987 699999999999999
Q ss_pred CCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeEEEEEcCCCCe
Q 011971 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--------DTGSQVCNLVWSKNVNE 391 (474)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~ 391 (474)
..+++....+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+ .|...|.+++|+|+++.
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCeEeeeeccccCceEEEEECCCCC-EEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence 999998999999999999999999987 666665 7999999999999888776 36778999999999999
Q ss_pred EEEEEecCCCeEEEEECCCCceeE-------------------------------------------EEcCCCccEEEEE
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLA-------------------------------------------TLTGHTFRVLYLA 428 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~-------------------------------------------~l~~h~~~V~~l~ 428 (474)
|++ ++.|+.|++||+.+++.+. .+.+|...|.+++
T Consensus 254 l~s--~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 254 IAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp EEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEE--EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 999 7899999999998776543 3457999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 429 ISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 429 ~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|+|||++|++++.|++|++||+..+..
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999999999999999987653
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-37 Score=301.66 Aligned_cols=281 Identities=23% Similarity=0.348 Sum_probs=245.3
Q ss_pred CcceeeeeCCC--CcEE-EEEcCCeEEEEeCCCCCE-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 167 DFYLNLVDWSS--HNVL-AVGLGNCVYLWNACSSKV-----TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 167 d~~v~~l~~s~--~~~l-a~~~d~~V~lwd~~~~~~-----~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
.-.|++|+|+| +++| +++.|+.|+|||+.+.+. ...+ .+|...|.+++|+|+|++|++|+.||.|++|+..
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 34599999997 3455 566799999999876542 2222 2789999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC--CEEEEEeCCCc
Q 011971 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNR 314 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~--~~lasg~~Dg~ 314 (474)
..........+...+..+.+. +..|++|+.|+.+++||+...........+|...|..++|++++ .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 999999888899999999887 47999999999999999988776677778899999999998864 57899999999
Q ss_pred EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
|++||+++++.+..+.+|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+..+.....+..+.|+|++..++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence 99999999999999999999999999999987 556665 899999999999999999999999999999998765544
Q ss_pred EEecCCCeEEEEECCCCceeEEEc---------CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLT---------GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+.|+.|++||+.++..+..+. +|...|++++|+|||++|++|+.||+|++||+.++.
T Consensus 274 ---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ---ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ---cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 468999999999887776654 688899999999999999999999999999998875
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=303.46 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=251.1
Q ss_pred cceeeeeCCC-CcEEEE-EcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~-~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-.+++++|++ +++|++ +.|+.|++||+.+++....+. +|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4599999998 555555 468999999999999888774 7899999999999999999999999999999999999988
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCC-----CcEEEEECcCCcc----------eEeeecCcCC--CEEEEEEecCCCEE
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRD-----KSILQRDIRAQED----------FVSKLSGHKS--EVCGLKWSYDNREL 306 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~d-----g~I~iwd~~~~~~----------~~~~~~~h~~--~V~~l~~spd~~~l 306 (474)
+. |...|.+++|++ ..|++++.+ +.|.+||+..... ....+..|.. .+.+++|+|++++|
T Consensus 112 ~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 112 WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEE
T ss_pred ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEE
Confidence 88 889999999984 799999999 9999999986542 2344455666 89999999999999
Q ss_pred EEEeCCCcEEEEECCC-CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEE
Q 011971 307 ASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVW 385 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~ 385 (474)
++|+.||.|++||+++ .+.+..+..|...|.+++|+|++..++ +++ .|+.|++||+.+++.+..+.....+..++|
T Consensus 191 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 267 (369)
T 3zwl_B 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI-TSS--RDTNSFLVDVSTLQVLKKYETDCPLNTAVI 267 (369)
T ss_dssp EEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE-Eec--CCceEEEEECCCCceeeeecCCCCceeEEe
Confidence 9999999999999998 788888989999999999999987554 444 799999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCC--------------eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 386 SKNVNELVSTHGYSQN--------------QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 386 s~~~~~l~~~~g~~dg--------------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+|+++.+++ +..++ .+++||+.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|++.
T Consensus 268 ~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 268 TPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp CSSSSEEEE--EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred cCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 999999999 55666 89999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011971 452 PSPK 455 (474)
Q Consensus 452 ~~~~ 455 (474)
.+..
T Consensus 346 ~~~~ 349 (369)
T 3zwl_B 346 KSYF 349 (369)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7543
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-38 Score=317.98 Aligned_cols=246 Identities=23% Similarity=0.342 Sum_probs=228.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+ +.+|++|+.|++|++||+.+.. .
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~-~ 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-C 184 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-E
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-e
Confidence 899999999999999999999999999999999999999999999999999998 4799999999999999998766 6
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+..+.+|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.+++|+|++. ++++|+ .|+.|++|
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s--~D~~v~vw 261 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCS--NDQTVRVW 261 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSCEEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEc--CCCeEEEE
Confidence 788899999999999999999999999999999999999999999999999999999999987 566665 79999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCC--------------------CCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKN--------------------VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF 422 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~--------------------~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 422 (474)
|+.++++...+. +...|.+++|+|+ +.+|++ |+.|+.|++||+.++.++..+.+|..
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999887775 6678999999997 556777 88999999999999999999999999
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 423 RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 423 ~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
.|.+++|+|+|++|++|+.||+|++||+..+....
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999999999999999999999998766544
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-37 Score=331.79 Aligned_cols=282 Identities=19% Similarity=0.271 Sum_probs=237.2
Q ss_pred CcceeeeeCCCC---cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 167 DFYLNLVDWSSH---NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 167 d~~v~~l~~s~~---~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
...+++++|+|+ .+++++.|+.|++||..+++....+. +|...|.+++|+|+|++||+|+.||+|+|||+.+++.+
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 346999999993 26667789999999998887776664 89999999999999999999999999999999999998
Q ss_pred EEec-------CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcc--------------------------------
Q 011971 244 RTME-------GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQED-------------------------------- 282 (474)
Q Consensus 244 ~~~~-------~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~-------------------------------- 282 (474)
..+. +|...|.+++|++ .+|++++.|++|++||+.+...
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 8884 7999999999984 7999999999999999986531
Q ss_pred ----------eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE-c---------------------
Q 011971 283 ----------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY-C--------------------- 330 (474)
Q Consensus 283 ----------~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~-~--------------------- 330 (474)
....+.+|...|.+++|+|++++|++++.|++|++||+.+++....+ .
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 12344689999999999999999999999999999998765432211 0
Q ss_pred ------------------------------------------------------------cCCCcEEEEEECCCCCcEEE
Q 011971 331 ------------------------------------------------------------EHTAAVKAIAWSPHLHGLLA 350 (474)
Q Consensus 331 ------------------------------------------------------------~h~~~V~~l~~sp~~~~ll~ 350 (474)
.|...+.+++|+|++. +++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~la 464 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVA 464 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEE
Confidence 1234567899999987 666
Q ss_pred EecCCCCCeEEEEECCCCce--eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEE--EcCCCccEE
Q 011971 351 SGGGTADRCIRFWNTTTNTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLAT--LTGHTFRVL 425 (474)
Q Consensus 351 sg~Gt~d~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~--l~~h~~~V~ 425 (474)
+|+ .|+.|++||+.++.. +....+...|.+++|+|++++|++ ++.|+.|++|++.+ ++.+.. +.+|...|.
T Consensus 465 sgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~ 540 (611)
T 1nr0_A 465 VGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540 (611)
T ss_dssp EEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred EeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCCCCceeeeeeeeeccccee
Confidence 665 899999999987653 344567888999999999999999 78999999999987 555443 345999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 426 YLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 426 ~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+++|+|||++|++|+.|++|++|++..+.
T Consensus 541 ~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 541 CVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 99999999999999999999999998765
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.2e-37 Score=299.10 Aligned_cols=277 Identities=22% Similarity=0.272 Sum_probs=244.0
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEE---Ee-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKL---CD-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~---~~-~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
.-.+.+++|++ +.+|+++.++.|++||+.+++.... +. .+|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 44589999998 6788888899999999987653222 21 2688999999999999999999999999999999877
Q ss_pred --EEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 242 --RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 242 --~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
....+..|...|.+++|++ ++|++++.||.|++||+++.. ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 6677889999999999984 799999999999999998876 57788889999999999999999999999999999
Q ss_pred EECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEe
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 397 (474)
||+++++.+..+ .+...+.+++|+|++..++ +++ .|+.|++||+.+++......+...+.+++|+|++++|++ +
T Consensus 210 ~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 283 (337)
T 1gxr_A 210 WDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA-VGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS--T 283 (337)
T ss_dssp EETTTTEEEEEE-ECSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE--E
T ss_pred EECCCCceEeee-cCCCceEEEEECCCCCEEE-EEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE--e
Confidence 999999888777 5788999999999988555 444 799999999999988777778889999999999999998 7
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 284 ~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred cCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 78999999999999888554 588899999999999999999999999999973
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-37 Score=312.31 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=246.8
Q ss_pred CcceeeeeCCCCcEEEEEcCCeEEEEeCCCCC------EEEEEecCCCCCEEEEEEcCC----C---CEEEEEeCCCcEE
Q 011971 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSK------VTKLCDLGIDDSVCSVGWANR----N---THLAVGTSHGKVQ 233 (474)
Q Consensus 167 d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~------~~~~~~~~~~~~V~~v~~sp~----g---~~la~gs~dg~I~ 233 (474)
.-.+++++|++..+++++.|+.|++|++.+++ ....+. +|...|++++|+|+ + ++|++|+.||.|+
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 34699999999767777789999999999988 444443 78999999999999 9 9999999999999
Q ss_pred EecCCCCeE-----EEEecCC-----CCcEEEEEec----C--CE-EEEEeCCCcEEEEECcC------CcceEe-----
Q 011971 234 IWDASRCKR-----VRTMEGH-----RLRVGALAWS----S--SL-LSSGSRDKSILQRDIRA------QEDFVS----- 285 (474)
Q Consensus 234 iwd~~~~~~-----~~~~~~h-----~~~V~~l~~~----~--~~-l~sgs~dg~I~iwd~~~------~~~~~~----- 285 (474)
+||+.+++. +..+..| ...|.+++|+ + .. |++++.||.|++||++. ... +.
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~ 173 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTL 173 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcc
Confidence 999988876 8888888 5999999999 4 67 99999999999999988 442 33
Q ss_pred ee-------cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc---C---CCcEEEEEECCCCCcEEEEe
Q 011971 286 KL-------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE---H---TAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 286 ~~-------~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~---h---~~~V~~l~~sp~~~~ll~sg 352 (474)
.+ ..|...|.+++|+|++ +|++|+.|+.|++||+++++.+..+.. | ...|.+++|+|++.. ++++
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~ 251 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIA 251 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE-EEEE
Confidence 44 4588999999999999 999999999999999999999999988 9 999999999999875 4454
Q ss_pred cCCCC---CeEEEEECCCCceeeeec--------------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE
Q 011971 353 GGTAD---RCIRFWNTTTNTHLSCMD--------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 353 ~Gt~d---~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 415 (474)
+ .| +.|++||+.+++.+..+. +...|.+++|+|++++|++ ++.|+.|++||+.+++.+.
T Consensus 252 ~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 252 H--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp E--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEEE
T ss_pred e--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCCceeE
Confidence 4 68 999999999999888876 5778999999999999998 7799999999999999999
Q ss_pred EEc------CC---------------CccEEEEEECCCC----------CEEEEEeCCCcEEEEeCCCC
Q 011971 416 TLT------GH---------------TFRVLYLAISPDG----------QTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 416 ~l~------~h---------------~~~V~~l~~spdg----------~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.+. +| ...|.+++|+|+| ++|++++.||.|++|++..+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999 88 9999999999998 79999999999999999765
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.7e-37 Score=330.16 Aligned_cols=278 Identities=22% Similarity=0.351 Sum_probs=239.0
Q ss_pred CcceeeeeCCCC--c-EEEEEcCCeEEEEeCCCCC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 167 DFYLNLVDWSSH--N-VLAVGLGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 167 d~~v~~l~~s~~--~-~la~~~d~~V~lwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
.-.|++++|+++ + +++++.|+.|+||++.+.. ....+ .+|...|.+++|+|+|++|++|+.||.|+|||+.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 345999999973 4 5566679999999987643 22233 2899999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceE--eeecCcCCCEEEEEEecCC--CEEEEEeCC
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV--SKLSGHKSEVCGLKWSYDN--RELASGGND 312 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spd~--~~lasg~~D 312 (474)
+++.+..+.+|...|.+++|++ ..|++|+.|++|++||+....... ....+|...|.+++|+|++ ..|++|+.|
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 9999999999999999999984 789999999999999986543211 1225789999999999986 589999999
Q ss_pred CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeE
Q 011971 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l 392 (474)
++|++||+++++....+.+|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+..+.....+.+++|+|++..+
T Consensus 541 ~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 617 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWL 617 (694)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEE
Confidence 9999999999999999999999999999999987 566665 8999999999999999999888999999999999887
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCC-------------------ccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHT-------------------FRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
++ + .++.|+|||+.++..+..+..+. ..+.+++|+|||++|++|+.||+|++|++.
T Consensus 618 ~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 618 CA--A-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EE--E-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EE--E-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 76 4 46779999999998887775432 137899999999999999999999999985
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=316.79 Aligned_cols=285 Identities=16% Similarity=0.350 Sum_probs=248.8
Q ss_pred ceeeeeCCCC-c-EEEEE-----------cCCeEEEEeCCCCCEE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011971 169 YLNLVDWSSH-N-VLAVG-----------LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (474)
Q Consensus 169 ~v~~l~~s~~-~-~la~~-----------~d~~V~lwd~~~~~~~-~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~i 234 (474)
.+.+++|+|+ . +|+++ .|+.|+|||+.+++.. ....+.|...|++++|+|++.+|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 4788999993 3 77776 5789999999987632 2222368899999999999999999999999999
Q ss_pred ecCCC----CeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCc------ce--EeeecCcCCCEEEEEE
Q 011971 235 WDASR----CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE------DF--VSKLSGHKSEVCGLKW 299 (474)
Q Consensus 235 wd~~~----~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~~--~~~~~~h~~~V~~l~~ 299 (474)
||+.+ .+.+..+.+|...|.+++|+ +.+|++++.||.|++||+.... .. ......|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 45888899999999999998 4689999999999999998765 22 2234679999999999
Q ss_pred ecC-CCEEEEEeCCCcEEEEECCCCcceEEEccC------CCcEEEEEECCCCCcEEEEecCCCCC---eEEEEECCCC-
Q 011971 300 SYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGTADR---CIRFWNTTTN- 368 (474)
Q Consensus 300 spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h------~~~V~~l~~sp~~~~ll~sg~Gt~d~---~I~iwd~~~~- 368 (474)
+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++..++++++ .|+ .|++||++++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNAN 251 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCC
Confidence 999 789999999999999999999999888776 789999999999877888876 787 9999999986
Q ss_pred ceeeeec--CCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCC-CEEEEEeCCCc
Q 011971 369 THLSCMD--TGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDG-QTIVTGAGDET 444 (474)
Q Consensus 369 ~~~~~~~--~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~t~s~Dg~ 444 (474)
..+..+. +...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 5666665 678899999999 8888988 7799999999999999999999999999999999999 89999999999
Q ss_pred EEEEeCCCCCCCC
Q 011971 445 LRFWNVFPSPKSQ 457 (474)
Q Consensus 445 I~iW~l~~~~~~~ 457 (474)
|++|++.......
T Consensus 330 i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 330 IEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEESCCCCCSS
T ss_pred EEEEEccCCCCCc
Confidence 9999998876544
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=306.56 Aligned_cols=242 Identities=21% Similarity=0.287 Sum_probs=209.0
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~---~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
+..|++++|++ +.+++++.|+.|+|||+.+++...... .+|.+.|++|+|+|+|++|++|+.||+|+|||+.+++.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 44589999999 567777789999999999887544332 38999999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeee--cCcCCCEEEEEEecC-CCEEEEEeCCCcEE
Q 011971 243 VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYD-NRELASGGNDNRLF 316 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spd-~~~lasg~~Dg~v~ 316 (474)
+..+.+|...|.+++|++ .+|++|+.|+.|++||+++.+. ...+ ..|...+.+++|+|+ +++|++|+.||.|+
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 999999999999999984 5799999999999999998773 4433 346677999999994 57889999999999
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 396 (474)
+||+++++++..+.+|...|.+++|+|++..+|++|+ .|++|++||+.+++++....|...|.+++|+|+++.++++
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas- 317 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT- 317 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE-
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEE-
Confidence 9999999999999999999999999999987888886 8999999999999988777788999999999999876654
Q ss_pred ecCCCeEEEEECCCCc
Q 011971 397 GYSQNQIIVWRYPTMS 412 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~ 412 (474)
++.|+.|++|++++..
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 6789999999998754
No 29
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=298.88 Aligned_cols=246 Identities=23% Similarity=0.371 Sum_probs=222.7
Q ss_pred CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEecCCCCeE--EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEEC
Q 011971 206 GIDDSVCSVGWANR----NTHLAVGTSHGKVQIWDASRCKR--VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDI 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~----g~~la~gs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~ 277 (474)
+|.+.|.+++|+++ +.+|++|+.||+|+|||+...+. ...+.+|...|.+++|++ .++++++.|+.|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 79999999999974 67999999999999999987653 456889999999999984 78999999999999999
Q ss_pred cCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
.++. .+..+..|...+.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+|+++ ++++|+ .|
T Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~lasg~--~d 185 (321)
T 3ow8_A 110 ENGK-QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-YLASGA--ID 185 (321)
T ss_dssp TTTE-EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS-EEEEEE--TT
T ss_pred CCCC-EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC-EEEEEc--CC
Confidence 8876 5777888999999999999999999999999999999999999999999999999999999988 555554 79
Q ss_pred CeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEE
Q 011971 358 RCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTI 436 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 436 (474)
+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|+|.+|
T Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence 999999999999988886 5678999999999999999 8899999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCC
Q 011971 437 VTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 437 ~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
++++.|++|++||+..+....
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEE
T ss_pred EEEeCCCcEEEEeCCCCEEEE
Confidence 999999999999998765443
No 30
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=291.69 Aligned_cols=281 Identities=18% Similarity=0.218 Sum_probs=241.9
Q ss_pred cceeeeeCCCCc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEE
Q 011971 168 FYLNLVDWSSHN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRV 243 (474)
Q Consensus 168 ~~v~~l~~s~~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~ 243 (474)
-.+++++|..++ +++++.|+.|++||+.+++....+. .|...|.+++|+|++++|++|+.||.|++|++... +.+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 458899994354 5555568999999999888777765 67899999999999999999999999999998654 667
Q ss_pred EEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 011971 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~ 322 (474)
..+.+|...|.+++|+++.|++++.||.|++|| .......+..|...|.++.|.+ ++++|++++.|+.|++|| .
T Consensus 98 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~ 172 (313)
T 3odt_A 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N 172 (313)
T ss_dssp CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c
Confidence 888999999999999999999999999999999 2335777888999999999998 999999999999999999 4
Q ss_pred CcceEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 323 TQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 323 ~~~~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
.+....+.. |...|.+++|+|++. +++++ .|+.|++||+++++.+..+. +...|.+++|+|++ .+++ ++.|
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d 245 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVS--CGED 245 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEE--EETT
T ss_pred CceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEE--EecC
Confidence 566677776 999999999999987 44554 79999999999999988887 67789999999999 5666 7799
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSE 462 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~~ 462 (474)
+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++..+......+.+
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 9999999999999999999999999999999998 667999999999999987766554433
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5e-38 Score=312.06 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=215.6
Q ss_pred eeeCCCCcE-EEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEecCCCCeEE-
Q 011971 172 LVDWSSHNV-LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS------HGKVQIWDASRCKRV- 243 (474)
Q Consensus 172 ~l~~s~~~~-la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~------dg~I~iwd~~~~~~~- 243 (474)
.++.++.++ +..+.+.....|++..... ..|...|++|+|+|||++||+|+. ||.|++|+..++...
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 455566444 4444567889998764332 268999999999999999999997 778999998776543
Q ss_pred ---EEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcce---EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 244 ---RTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 244 ---~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
....+|...|.+++|++ +.+++++.||+|++||+.+++.. .....+|...|.+++|+|++++|++|+.|+.|+
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 33446889999999985 68889999999999999876532 223458999999999999999999999999999
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeEEEEEcCCCCeEE
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 393 (474)
+||+++++.+..+..|...|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...+.+++|+|++..++
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE
Confidence 9999999999999999999999999999987888776 89999999999988776654 456799999999865544
Q ss_pred EEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccCC
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDG-QTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASS 467 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~t~s~Dg~I~iW~l~~~~~~~~~~~~~~~~s 467 (474)
++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+..+.......+...+.+
T Consensus 243 a~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~ 316 (357)
T 4g56_B 243 AC-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTG 316 (357)
T ss_dssp EE-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEE
T ss_pred EE-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEE
Confidence 33 7899999999999999999999999999999999987 5799999999999999988766555555544443
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-37 Score=307.73 Aligned_cols=277 Identities=22% Similarity=0.334 Sum_probs=236.9
Q ss_pred CcceeeeeCCC------CcEEEEEcCCeEEEEeCCCCCEEEEEec----CCCCCEEEEEEcCC----CCEEEEEeCCCcE
Q 011971 167 DFYLNLVDWSS------HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR----NTHLAVGTSHGKV 232 (474)
Q Consensus 167 d~~v~~l~~s~------~~~la~~~d~~V~lwd~~~~~~~~~~~~----~~~~~V~~v~~sp~----g~~la~gs~dg~I 232 (474)
...+.+++|+| ..+++++.++.|++||..+++....+.. .|...|++++|+|+ |.+|++|+.||.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 34699999996 2377888889999999998776555432 36688999999998 6799999999999
Q ss_pred EEecCCCCeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeee---cCcCCCEEEEEEecCCCEE
Q 011971 233 QIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 233 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spd~~~l 306 (474)
++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+++.. .+..+ .+|...|.+++|+|++++|
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCCCEE
Confidence 9999999999999999999999999974 799999999999999999876 45555 6899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcceEEEc----------------------------cCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYC----------------------------EHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~----------------------------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
++++.||.|++||+++++....+. .|...|.+++|+ +. ++++++ .|+
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~--~d~ 251 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKS--CEN 251 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEEC--SSS
T ss_pred EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEe--cCC
Confidence 999999999999999876543333 399999999999 33 677765 799
Q ss_pred eEEEEECCCCce--------------eeeec-CCCCeEEEEEcCC--CCeEEEEEecCCCeEEEEECCCCc----eeEEE
Q 011971 359 CIRFWNTTTNTH--------------LSCMD-TGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPTMS----KLATL 417 (474)
Q Consensus 359 ~I~iwd~~~~~~--------------~~~~~-~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l 417 (474)
.|++||+.++.. +..+. +...|.+++|+|+ +++|++ |+.||.|++||+.+++ ....+
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccccceEE
Confidence 999999987654 33333 5667999999999 999998 8899999999999875 44577
Q ss_pred cCC--CccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 418 TGH--TFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 418 ~~h--~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 777 7899999999999999999999999999985
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=302.10 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=239.7
Q ss_pred CcceeeeeCCC-C-cEEEEEc----CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEecC
Q 011971 167 DFYLNLVDWSS-H-NVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDA 237 (474)
Q Consensus 167 d~~v~~l~~s~-~-~~la~~~----d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~gs~dg~I~iwd~ 237 (474)
...+.+++|+| + .+++++. |+.|+|||+.+++.......+|...|.+++|+|+ +.+|++|+.||.|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 44699999999 4 4666663 7899999999999877766688999999999998 699999999999999999
Q ss_pred CCCe-EEEEecCCCCcEEEEEe------c--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCC----CEEEEE----Ee
Q 011971 238 SRCK-RVRTMEGHRLRVGALAW------S--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS----EVCGLK----WS 300 (474)
Q Consensus 238 ~~~~-~~~~~~~h~~~V~~l~~------~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~----~s 300 (474)
.+++ .+..+.+|...|.++.| + +++|++++.||.|++||++.....+..+..|.. .|.++. |+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 9888 88899999999999966 3 469999999999999999987655666665554 899998 78
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECC---CCCcEEEEecCCCCCeEEEEECCCCceeeee---
Q 011971 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP---HLHGLLASGGGTADRCIRFWNTTTNTHLSCM--- 374 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp---~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~--- 374 (474)
+++++|++|+.|+.|++||+++++.... ..|...|.+++|+| ++.. +++++ .|+.|++||+++++.+..+
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNK-LVATS--LEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCE-EEEEE--STTEEEEEEEEEEETTTEEEEE
T ss_pred CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCE-EEEEC--CCCeEEEEeCcCCCcccceeee
Confidence 8999999999999999999999887544 57899999999999 7764 55554 7999999999887665444
Q ss_pred ---cCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCC-------------------ceeEEEcCCCccEEEEEECC
Q 011971 375 ---DTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTM-------------------SKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 375 ---~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~-------------------~~~~~l~~h~~~V~~l~~sp 431 (474)
.+...|.+++|+|+++ ++++ ++.||.|++||+... +.+..+.+|...|.+++|+|
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 4678899999999999 5666 789999999998753 46778889999999999999
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCC
Q 011971 432 DGQTIV-TGAGDETLRFWNVFPSP 454 (474)
Q Consensus 432 dg~~l~-t~s~Dg~I~iW~l~~~~ 454 (474)
+|++|+ +++.||.|++|++....
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCeEEEEecCCCcEEEEECCCcc
Confidence 999998 89999999999997653
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-36 Score=317.96 Aligned_cols=269 Identities=27% Similarity=0.494 Sum_probs=236.8
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
..+.+++|++ +. +++++.|+.|++||........+. +|...|.+++|+|+|++|++|+.||.|++||. +++.+..
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~ 380 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 380 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 3588899998 44 455567899999998766554332 78899999999999999999999999999995 5778888
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+.+|...|.+++|++ .+|++++.|+.|++||... ..+..+.+|...|++++|+|++++|++++.|+.|++||. ++
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~ 457 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NG 457 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC
Confidence 999999999999984 7899999999999999643 357788899999999999999999999999999999996 56
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
+.+..+..|...|.+++|+|++. ++++++ .|+.|++||. +++++..+. +...|.+++|+|++++|++ ++.|+.
T Consensus 458 ~~~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--~~~dg~ 531 (577)
T 2ymu_A 458 QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKT 531 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTSE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE--EECcCE
Confidence 77888889999999999999988 555554 7999999995 566666665 6778999999999999998 779999
Q ss_pred EEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
|+|||+ +++.+..+.+|...|++++|+|||++|+|++.|++|++||
T Consensus 532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 532 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999996 6788999999999999999999999999999999999997
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=304.56 Aligned_cols=276 Identities=16% Similarity=0.244 Sum_probs=245.9
Q ss_pred CcceeeeeCCC-CcEEEE-EcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~-~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.-.+.+++|++ +++|++ +.++.|++|| .+++....+. +|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 34699999998 455554 5688999999 5666666654 789999999999999999999999999999999999999
Q ss_pred EecCCCCc---------------EEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEE
Q 011971 245 TMEGHRLR---------------VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (474)
Q Consensus 245 ~~~~h~~~---------------V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 308 (474)
.+..+... +.+++|+ ...+++++.+|.|++||++... .+..+..|...|.+++|+|++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-PTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-CSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-eeeeeccCCCceEEEEECCCCCEEEE
Confidence 99888777 8899997 5789999999999999999876 56777899999999999999999999
Q ss_pred EeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcC
Q 011971 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (474)
Q Consensus 309 g~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 387 (474)
++.|+.|++||+++++.+..+..|...|.+++|+|++ ++++++ .|+.|++||+.+++.+..+. +...+.+++|+|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999999999999999999999999999999998 566655 79999999999999888876 467899999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCc--------------------eeEEEcCCCc--cEEEEEECCCCCEEEEEeCCCcE
Q 011971 388 NVNELVSTHGYSQNQIIVWRYPTMS--------------------KLATLTGHTF--RVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
+++.|++ ++.+|.|++||+.+++ .+..+.+|.. .|.+++|+|++++|++++.||.|
T Consensus 341 ~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 341 DGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp TSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred CCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 9999998 7799999999999888 8899999976 99999999999999999999999
Q ss_pred EEEeCC
Q 011971 446 RFWNVF 451 (474)
Q Consensus 446 ~iW~l~ 451 (474)
++|++.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999985
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-35 Score=291.66 Aligned_cols=245 Identities=17% Similarity=0.358 Sum_probs=222.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc--
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE-- 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~-- 281 (474)
+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|++ .+|++|+.|+.|++||+.+..
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 8999999999999999999999999999999999999999999999999999984 799999999999999998754
Q ss_pred -ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
.....+.+|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++. ++++|+ .|+.|
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~--~d~~v 208 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA--CDASA 208 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCE
T ss_pred ceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe--CCCcE
Confidence 3456678999999999999877 489999999999999999999999999999999999999987 666665 89999
Q ss_pred EEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCCCEEE
Q 011971 361 RFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~ 437 (474)
++||++++.++..+. +...|.+++|+|+++.|++ |+.|+.|++||+.+++.+..+.. +...|.+++|+|+|++|+
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 999999999888876 5678999999999999999 88999999999999888877753 345799999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCC
Q 011971 438 TGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 438 t~s~Dg~I~iW~l~~~~~~ 456 (474)
+|+.||.|++||+......
T Consensus 287 ~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 287 AGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEETTSEEEEEETTTCCEE
T ss_pred EECCCCeEEEEEcccCcEe
Confidence 9999999999999876543
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.6e-36 Score=306.29 Aligned_cols=276 Identities=22% Similarity=0.424 Sum_probs=240.8
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.+.++.++...+++++.|+.|++||..+++....+. +|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 211 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence 488999977888888889999999999999888775 79999999999 788999999999999999999999999999
Q ss_pred CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce--EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
|...|.+++|+++.|++|+.||.|++||+.+.... ...+.+|...|.+++| ++++|++|+.||.|++||+++++.+
T Consensus 212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE
Confidence 99999999999999999999999999999887633 2667899999999999 7789999999999999999999999
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
..+..|...|.+++|++ . ++++|+ .|+.|++||+++++++..+. +...|.++.| ++..|++ |+.||.|++
T Consensus 290 ~~~~~~~~~v~~~~~~~--~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~dg~i~v 360 (435)
T 1p22_A 290 RTLNGHKRGIACLQYRD--R-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAYDGKIKV 360 (435)
T ss_dssp EEEECCSSCEEEEEEET--T-EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EETTSCEEE
T ss_pred EEEcCCCCcEEEEEeCC--C-EEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeCCCcEEE
Confidence 99999999999999953 3 677765 89999999999999988887 5677999998 7888888 889999999
Q ss_pred EECCCCc---------eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 406 WRYPTMS---------KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 406 wd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
||+.++. .+..+.+|...|.+++| ++.+|++|+.||+|++||+......+...
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 9997665 78899999999999999 78899999999999999999877655443
No 38
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.3e-36 Score=296.07 Aligned_cols=280 Identities=13% Similarity=0.188 Sum_probs=237.6
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
..+.+++|++ +++|+++ .++.|++||+.+++ ....+. +|...|.+++|+|++++|++|+.||.|++||+.+++..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 4589999998 6677666 68999999999987 444443 78999999999999999999999999999999988755
Q ss_pred EE--ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 244 RT--MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 244 ~~--~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
.. +..|...|.+++|+ +.+|++++.|+.|++||++.... .......|...|.+++|+|++++|++|+.||.|+
T Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 88 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 44 36799999999998 47999999999999999988763 2333467899999999999999999999999999
Q ss_pred EEEC------------------CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C
Q 011971 317 VWNQ------------------HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-G 377 (474)
Q Consensus 317 iwd~------------------~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~ 377 (474)
+||+ ..++.+..+..|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+.. .
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCC
Confidence 9995 36778888889999999999999987 555554 799999999999999888874 4
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--Cce--------------------------------e------EEE
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT--MSK--------------------------------L------ATL 417 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~--------------------------------~------~~l 417 (474)
..+.+++|+|++.++++ | .|+.|++|++.+ ++. . ..+
T Consensus 245 ~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp CCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 58999999999998877 6 899999999987 320 0 223
Q ss_pred -cCCCccEEEEEEC-CCC---CEEEEEeCCCcEEEEeCCCCC
Q 011971 418 -TGHTFRVLYLAIS-PDG---QTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 418 -~~h~~~V~~l~~s-pdg---~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+|...|.+++|. ++| .+|++|+.||.|++|++....
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 4899999999966 677 999999999999999987543
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.3e-36 Score=297.35 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=228.1
Q ss_pred cceeeeeCCCC--cEEEE-EcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeE
Q 011971 168 FYLNLVDWSSH--NVLAV-GLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~~--~~la~-~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
..+++++|+++ ++|++ +.|+.|+|||+.+++....+.. +|...|.+++|+| ++++|++|+.||.|++||+.. ..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 45999999984 45554 4689999999999988877764 7899999999999 789999999999999999986 45
Q ss_pred EEEecC---CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEEeCCCcEE
Q 011971 243 VRTMEG---HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLF 316 (474)
Q Consensus 243 ~~~~~~---h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg~~Dg~v~ 316 (474)
+..+.. |...|.+++|+ +.+|++|+.|+.|++||++ . ..+..+.+|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 555543 45889999998 4799999999999999994 3 35788889999999999999999 999999999999
Q ss_pred EEECCC----CcceEEEccCCCcEEEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeeeecC---------------
Q 011971 317 VWNQHS----TQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------------- 376 (474)
Q Consensus 317 iwd~~~----~~~~~~~~~h~~~V~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--------------- 376 (474)
+||+++ +..+..+ .|...|.+++|+| ++. ++++++ .|+.|++||+.+++....+..
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 999987 5556666 7999999999999 877 455554 799999999998877555431
Q ss_pred ---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 377 ---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 377 ---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
...+..++|+|++++ + |+.|+.|+|||+.+++.+..+.+ |...+..++|+|+|++|++|+ ||.|++|++.
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 123445666677766 3 77999999999999999999987 557788889999999999997 9999999987
Q ss_pred C
Q 011971 452 P 452 (474)
Q Consensus 452 ~ 452 (474)
+
T Consensus 382 ~ 382 (383)
T 3ei3_B 382 D 382 (383)
T ss_dssp -
T ss_pred C
Confidence 4
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.7e-37 Score=311.03 Aligned_cols=283 Identities=16% Similarity=0.206 Sum_probs=223.9
Q ss_pred CcceeeeeCCC--CcEEEEE-cCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCe
Q 011971 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 167 d~~v~~l~~s~--~~~la~~-~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
+..|++|+|+| .++||+| .||.|+|||+.+++......+ +|.+.|++|+|+| ++++|++|+.||+|+|||+++..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 44699999998 4566555 689999999998876655544 7999999999998 68999999999999999998765
Q ss_pred EEEEecC--CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEEeCCCcEE
Q 011971 242 RVRTMEG--HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLF 316 (474)
Q Consensus 242 ~~~~~~~--h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg~~Dg~v~ 316 (474)
....... +...+.+++|+ +.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 5444443 44567888887 479999999999999999754 3677889999999999999876 788999999999
Q ss_pred EEECCCCcceEE---EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeEEEEEc
Q 011971 317 VWNQHSTQPVLK---YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------SQVCNLVWS 386 (474)
Q Consensus 317 iwd~~~~~~~~~---~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s 386 (474)
|||+++.+.... ...|...|.+++|+|++.. |++++ .|+.|++||+.++.....+... ..+....|+
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCe-eEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 999988754433 3479999999999999885 45554 7999999999998776554321 123455677
Q ss_pred CCCCeEEEEE----------ecCCCeEEEEECCCCceeEEEc-CCCccEEEE-EECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 387 KNVNELVSTH----------GYSQNQIIVWRYPTMSKLATLT-GHTFRVLYL-AISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 387 ~~~~~l~~~~----------g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l-~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+++..+++.. +..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++.++.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 7777766631 2234679999999999998875 688888887 6999999999875 8899999998775
Q ss_pred C
Q 011971 455 K 455 (474)
Q Consensus 455 ~ 455 (474)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 4
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-35 Score=286.64 Aligned_cols=243 Identities=18% Similarity=0.321 Sum_probs=208.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC--CeEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECcC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--CKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~ 279 (474)
+|.+.|++++|+|+|++||+|+.||+|+|||+.. .+.+.++.+|...|.+++|+ +++|++|+.|++|++||+++
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 7999999999999999999999999999999974 46788999999999999996 47999999999999999987
Q ss_pred Cc-ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--ceEEEccCCCcEEEEEECCCC---------
Q 011971 280 QE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHL--------- 345 (474)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~--------- 345 (474)
+. ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++++. ....+..|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 64 245667889999999999997 8899999999999999998763 245677899999999999974
Q ss_pred ---CcEEEEecCCCCCeEEEEECCCCc----eeeeec-CCCCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCCc--
Q 011971 346 ---HGLLASGGGTADRCIRFWNTTTNT----HLSCMD-TGSQVCNLVWSKNV---NELVSTHGYSQNQIIVWRYPTMS-- 412 (474)
Q Consensus 346 ---~~ll~sg~Gt~d~~I~iwd~~~~~----~~~~~~-~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~-- 412 (474)
..+|++|+ .|+.|++||++++. ....+. |...|.+++|+|++ .+|++ ++.|+.|+|||+.+..
T Consensus 167 ~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 167 TKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp ---CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTTSC
T ss_pred CCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCCCCc
Confidence 24777776 89999999998776 444444 66789999999995 66777 7899999999997643
Q ss_pred -eeEEE--cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 413 -KLATL--TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 413 -~~~~l--~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
....+ ..|...|.+++|+|+|++|++++.||+|++|++..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 22233 46888999999999999999999999999999864
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-35 Score=307.88 Aligned_cols=273 Identities=26% Similarity=0.468 Sum_probs=236.8
Q ss_pred CcceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
...+++++|++ +. +++++.++.|++|+.. ++....+. +|...|.+++|+|++.+|++++.||.|++||... +.+.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~ 338 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQ 338 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEe-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeE
Confidence 34588999998 44 5555678999999975 45555543 7899999999999999999999999999999764 5567
Q ss_pred EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+.+|...|.+++|++ ..|++|+.|+.|++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 7889999999999984 7999999999999999643 357788899999999999999999999999999999995 5
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
++.+..+..|...|.+++|+|++. ++++++ .|+.|++||.. ++.+..+ .+...|.+++|+|++++|++ ++.|+
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las--~~~d~ 489 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDK 489 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEE--EETTS
T ss_pred CCEEEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCC
Confidence 677888899999999999999987 455554 79999999975 4555444 46788999999999999999 77999
Q ss_pred eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 402 QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.|++||. +++.+..+.+|...|++++|+|||++|++++.||.|++||+..
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 9999995 7888999999999999999999999999999999999999743
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-34 Score=280.40 Aligned_cols=246 Identities=25% Similarity=0.405 Sum_probs=222.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|++ ++|++|+.|+.|++||+++.. .
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~ 99 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-C 99 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-E
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-E
Confidence 8999999999999999999999999999999999999999999999999999984 799999999999999999876 6
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~~w 176 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSS--YDGLCRIW 176 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC-EEEEEe--CCCcEEEE
Confidence 778899999999999999999999999999999999999999999999999999999999987 555554 79999999
Q ss_pred ECCCCceeeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEE---EEEECCCCCEEEE
Q 011971 364 NTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL---YLAISPDGQTIVT 438 (474)
Q Consensus 364 d~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg~~l~t 438 (474)
|+++++.+..+. ....+..++|+|++++|++ ++.|+.|++||+.+++.+..+.+|...+. .....+++.+|++
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred ECCCCceeeEEeccCCCceEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 999998887764 4567999999999999999 78999999999999999999998876533 2333468899999
Q ss_pred EeCCCcEEEEeCCCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~~ 457 (474)
|+.||.|++||+..+....
T Consensus 255 g~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp CCTTSCEEEEETTTCCEEE
T ss_pred ECCCCEEEEEECCCchhhh
Confidence 9999999999998876543
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-35 Score=287.69 Aligned_cols=281 Identities=20% Similarity=0.244 Sum_probs=239.9
Q ss_pred ceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE---E
Q 011971 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR---V 243 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~---~ 243 (474)
.+.+++|++ +.+++++. ++.+.+|........ ....+|...|++++|+|++++|++++ ||.|++||+.+++. +
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcccc-ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 467899998 67776665 455666654433222 22238999999999999999999998 99999999987642 2
Q ss_pred EEec--CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 244 RTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 244 ~~~~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
..+. +|...|.+++|++ ++|++++.||.|++||+..... ....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 3333 7999999999984 7899999999999999987652 356678899999999999999999999999999999
Q ss_pred ECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec
Q 011971 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 398 (474)
|+++++.+..+..|...|.+++|+|++..++ +++ .|+.|++||+++++.+..+.+...+.+++|+|+++.+++ ++
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~ 243 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLW-TGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GM 243 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EE
T ss_pred eCCCCceeeeeecccCceEEEEECCCCCEEE-EEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE--Ec
Confidence 9999999999999999999999999987544 544 799999999999999999999999999999999999998 77
Q ss_pred CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 399 SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 399 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
.++.|++||+.+.+. ..+..|...|.+++|+|++++|++++.||.|++|++..+....
T Consensus 244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp TTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 999999999998775 4677899999999999999999999999999999998876543
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-36 Score=300.35 Aligned_cols=276 Identities=13% Similarity=0.174 Sum_probs=232.0
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
.+.++|++ ..+++++.|+.|++||..+++....+. . ...+....|++++++|++|+.||.|++||+.+++....+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-R-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-S-CCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-c-CCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 44677887 567777789999999998776544432 2 3455566789999999999999999999999999999889
Q ss_pred CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc
Q 011971 248 GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (474)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~ 325 (474)
+|...|.+++|++ .+|++|+.|+.|++||+++.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 9999999999984 699999999999999999876 5677889999999999999999999999999999999999999
Q ss_pred eEEEcc---CCCcEEEEE---------------------ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCC
Q 011971 326 VLKYCE---HTAAVKAIA---------------------WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQ 379 (474)
Q Consensus 326 ~~~~~~---h~~~V~~l~---------------------~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~~~~ 379 (474)
+..+.. |...|.+++ |+|++. ++++|+ .|+.|++||+++++.+..+. +...
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGH--VSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEE--TTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEc--CCCeEEEEECCCCceeEEcccccCCC
Confidence 888874 444555555 567776 555554 79999999999998877775 4578
Q ss_pred eEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCce-eEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 380 VCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSK-LATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 380 v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|.+++|+|++. +|++ |+.||.|++||+.+++. +..+.+ |...|..+.+ +++++|++++.||.|++|++....
T Consensus 293 v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred ceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 99999999999 7777 88999999999998754 777776 6677887755 578899999999999999998753
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-34 Score=285.53 Aligned_cols=246 Identities=16% Similarity=0.322 Sum_probs=222.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc--
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE-- 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~-- 281 (474)
+|.+.|++++|+|++.+|++|+.||+|+|||..+++....+..|...|.+++|++ ..|++|+.|+.|.+|++....
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 8999999999999999999999999999999999999999999999999999984 799999999999999986432
Q ss_pred ---ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCC-CcEEEEecCCCC
Q 011971 282 ---DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL-HGLLASGGGTAD 357 (474)
Q Consensus 282 ---~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~ll~sg~Gt~d 357 (474)
.....+.+|...|.++.|+|++..|++|+.|++|++||+++++.+..+.+|...|.+++|+|+. ..++++|+ .|
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs--~D 219 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG--CD 219 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE--TT
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe--CC
Confidence 2345667899999999999999999999999999999999999999999999999999999863 24777776 89
Q ss_pred CeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC--CccEEEEEECCCCC
Q 011971 358 RCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH--TFRVLYLAISPDGQ 434 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~ 434 (474)
+.|++||+++++++..+. +...|.+++|+|++..|++ |+.|+.|++||+...+.+..+..+ ...+.+++|+|+|.
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 999999999999988876 5678999999999999998 889999999999998887777643 45789999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCC
Q 011971 435 TIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 435 ~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+|++|+.|++|++||+..+..
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEECCCcEEEEECCCCce
Confidence 999999999999999977654
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=313.09 Aligned_cols=265 Identities=9% Similarity=0.104 Sum_probs=213.9
Q ss_pred cCCeEEEEeCCCCCEEE--EEe-cCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEecCCCCeE-----------EE
Q 011971 185 LGNCVYLWNACSSKVTK--LCD-LGIDDSVCSVGWANR------NTHLAVGTSHGKVQIWDASRCKR-----------VR 244 (474)
Q Consensus 185 ~d~~V~lwd~~~~~~~~--~~~-~~~~~~V~~v~~sp~------g~~la~gs~dg~I~iwd~~~~~~-----------~~ 244 (474)
.|+.|+||++.+++... ... .+|.+.|.+++|+|+ +.+||+|+.||+|+|||+..++. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 46789999998876422 111 156789999999996 57999999999999999976532 24
Q ss_pred EecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEE--EEecCC-CEEEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGL--KWSYDN-RELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--~~spd~-~~lasg~~Dg~v~iwd~ 320 (474)
.+.+|...|.+++|+ +..|++|+.||+|++||+++.......+.+|...|.+| .|++++ .+||+|+.|++|+|||+
T Consensus 261 ~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp EECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred EEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 678899999999997 47999999999999999997755556688999999999 568887 89999999999999999
Q ss_pred CCCcceEEEccCCC--cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcCCCCeEEEEEe
Q 011971 321 HSTQPVLKYCEHTA--AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 321 ~~~~~~~~~~~h~~--~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g 397 (474)
++++.+..+.+|.. .|.+++|+|++.. +++++ .|++|++||++++.++..+ .+...|.+++|+|+++.|++ |
T Consensus 341 ~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S--g 415 (524)
T 2j04_B 341 KDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA--G 415 (524)
T ss_dssp GGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE--E
T ss_pred CCCCcccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE--E
Confidence 99888777766653 5889999999875 55554 6999999999998876654 47788999999999999998 8
Q ss_pred cCCCeEEEEECCC--------------------------------------------CceeEEEcCCCccEEEEEECCCC
Q 011971 398 YSQNQIIVWRYPT--------------------------------------------MSKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 398 ~~dg~I~iwd~~~--------------------------------------------~~~~~~l~~h~~~V~~l~~spdg 433 (474)
+.|+.|++||+.. +..+..+.+|...|.+|+|+|++
T Consensus 416 s~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 416 SADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp ETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred ECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 8999999987421 11233455788899999999995
Q ss_pred C---EEEEEeCCCcEEEEeCCCCC
Q 011971 434 Q---TIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 434 ~---~l~t~s~Dg~I~iW~l~~~~ 454 (474)
. +|++|+.||+|+||++....
T Consensus 496 ~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 496 AGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp TTTTEEEEECTTSEEEEEECSCC-
T ss_pred CccHHHHhhccCceEEEEEccccc
Confidence 4 99999999999999987543
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-34 Score=294.35 Aligned_cols=276 Identities=20% Similarity=0.301 Sum_probs=243.4
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|++++|++++ +|++|+.||+|++||+.+++.+..+.+
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 367888877878888889999999999999887775 799999999999988 999999999999999999999999999
Q ss_pred CCCcEEEEEec----CCEEEEEeCCCcEEEEECcCCcce----------------------EeeecCcCCCEEEEEEecC
Q 011971 249 HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDF----------------------VSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 249 h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~spd 302 (474)
|...|.+++|+ +.+|++|+.||.|++||++..... ...+.+|...|.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 99999999997 278999999999999999876522 45677899999887 577
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeE
Q 011971 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVC 381 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~ 381 (474)
+++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++.. +++|+ .|+.|++||+.+++++..+. +...|.
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISAS--MDTTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEE--TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE-EEEEe--CCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence 889999999999999999999999999999999999999999874 55554 79999999999999998886 667899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
++.|+ ++.+++ ++.||.|++||+.++.....+. |...+..++|++++.+|++|+ ||.|++||+.++....
T Consensus 357 ~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 357 LLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 99997 577888 7899999999999988776654 666788899999999999998 9999999999887654
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=291.03 Aligned_cols=277 Identities=15% Similarity=0.320 Sum_probs=237.3
Q ss_pred ceeeeeCCC-Cc-EEEEE-cCCeEEEEeC----CCCC------EEEEEec---------CCCCCEEEEEEcCCCCEEEEE
Q 011971 169 YLNLVDWSS-HN-VLAVG-LGNCVYLWNA----CSSK------VTKLCDL---------GIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~-~d~~V~lwd~----~~~~------~~~~~~~---------~~~~~V~~v~~sp~g~~la~g 226 (474)
.+.+++|++ +. +|+++ .|+.|++|++ .+++ ....+.. +|.+.|++++|+|++++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 488999998 55 55554 5799999999 8887 3333322 156799999999999999999
Q ss_pred eCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCC-----------
Q 011971 227 TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE----------- 293 (474)
Q Consensus 227 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~----------- 293 (474)
+.||.|++|| .+++.+..+.+|...|.+++|+ +.+|++++.||.|++||+.+.. .+..+..+...
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC--------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeeccccC
Confidence 9999999999 6788899999999999999998 4789999999999999998876 56667767666
Q ss_pred ----EEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 294 ----VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 294 ----V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
+.++.|++++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|++. ++++++ .|+.|++||+.+++
T Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 205 DGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSAS--DDGTLRIWHGGNGN 280 (425)
T ss_dssp -CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEECSSSBS
T ss_pred CcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEc--CCCEEEEEECCCCc
Confidence 9999999875 689999999999999999999999999999999999999988 555554 79999999999998
Q ss_pred eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 370 HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 370 ~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
.+..+. +...+.+++|+|++ .+++ ++.++.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence 888776 67789999999999 7776 7799999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 011971 449 NVFPSP 454 (474)
Q Consensus 449 ~l~~~~ 454 (474)
++....
T Consensus 358 ~~~~~~ 363 (425)
T 1r5m_A 358 DLKKLN 363 (425)
T ss_dssp ECHHHH
T ss_pred ECCCCc
Confidence 998654
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=301.38 Aligned_cols=277 Identities=11% Similarity=0.143 Sum_probs=227.7
Q ss_pred CcceeeeeCCC-C-c-EEEEEcCCeEEEEeCCC---CCEE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC-
Q 011971 167 DFYLNLVDWSS-H-N-VLAVGLGNCVYLWNACS---SKVT-KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS- 238 (474)
Q Consensus 167 d~~v~~l~~s~-~-~-~la~~~d~~V~lwd~~~---~~~~-~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~- 238 (474)
.-.+++++|++ + . +++++.|+.|+|||+.+ +... .....+|...|++++|+|++++|++|+.||.|++||++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 34699999998 3 3 55555789999999876 4422 12333689999999999999999999999999999995
Q ss_pred --CCeEEEEecC------------CCCcEEEEEec----CCEEEEEeCCCcEEEEECcCCcceEeeecC--cCCCEEEEE
Q 011971 239 --RCKRVRTMEG------------HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLK 298 (474)
Q Consensus 239 --~~~~~~~~~~------------h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~ 298 (474)
+++.+..+.+ +...+.++.+. +.+|++|+.||.|++||+++.. .+..+.+ |...|++++
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECCGGGCCEEEEE
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccCCCCCceEEEE
Confidence 4444433322 45667777743 5799999999999999999877 5667777 899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCC---CCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPH---LHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 299 ~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~---~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|. ...++++|+ .|+.|++||+.+++++..+
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEE
Confidence 99999999999999999999999999988886 78889999988764 233677765 8999999999999877766
Q ss_pred c---------------------------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--------
Q 011971 375 D---------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG-------- 419 (474)
Q Consensus 375 ~---------------------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------- 419 (474)
. +...|.+++|+ ++++|++ |+.|+.|++||+.+++.+..+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 376 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPSRFSDVF 376 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC--CCCEE
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEecccccCceE
Confidence 5 33448889999 7778887 88999999999999888777765
Q ss_pred -----------------------------CCccEEEEEECCC--CCEEEEEeCCCcEEEEe
Q 011971 420 -----------------------------HTFRVLYLAISPD--GQTIVTGAGDETLRFWN 449 (474)
Q Consensus 420 -----------------------------h~~~V~~l~~spd--g~~l~t~s~Dg~I~iW~ 449 (474)
|...|.+++|+++ +.+|++|+.||.|++|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 377 IPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=302.93 Aligned_cols=280 Identities=19% Similarity=0.297 Sum_probs=233.2
Q ss_pred CcceeeeeCCC-CcEEEE-EcCCeEEEEeCCC----CCEEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCC
Q 011971 167 DFYLNLVDWSS-HNVLAV-GLGNCVYLWNACS----SKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~-~~d~~V~lwd~~~----~~~~~~~~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~ 239 (474)
...+.+++|++ +.+|++ +.|+.|++|++.+ .+....+ .+|...|++++|+|+ +.+|++|+.||.|++||+.+
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 34589999998 455554 5689999999987 3344444 378999999999998 89999999999999999988
Q ss_pred Ce------EEEE---ecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCc------CCCEEEEEEec
Q 011971 240 CK------RVRT---MEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH------KSEVCGLKWSY 301 (474)
Q Consensus 240 ~~------~~~~---~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~sp 301 (474)
++ .... +..|...|.+++|++ .+|++++.||.|++||++... .+..+..| ...|.+++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECC
Confidence 76 3332 367999999999984 589999999999999999876 45556555 78999999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-cceEEEc-cCCCcEEEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 302 DN-RELASGGNDN---RLFVWNQHST-QPVLKYC-EHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 302 d~-~~lasg~~Dg---~v~iwd~~~~-~~~~~~~-~h~~~V~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
++ .+|++++.|+ .|++||++++ .++..+. .|...|.+++|+| ++. ++++++ .|+.|++||+.+++.+..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~--~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSG--RDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEE--SSSEEEEECSSSCCEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEe--CCCCEEEeeCCCCccceee
Confidence 97 6899999999 9999999986 6677787 8999999999999 655 566655 7999999999999998887
Q ss_pred c-CCCCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceeEEEc----------------------------------
Q 011971 375 D-TGSQVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSKLATLT---------------------------------- 418 (474)
Q Consensus 375 ~-~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~---------------------------------- 418 (474)
. +...|.+++|+|++ ..|++ ++.|+.|++|++.+........
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP 379 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred cCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence 6 56789999999999 67777 8899999999998765322211
Q ss_pred -CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 419 -GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 419 -~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.|...+..++|+|||++|++++.|++|++|++.+.
T Consensus 380 ~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 380 TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999999764
No 52
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-35 Score=297.71 Aligned_cols=259 Identities=17% Similarity=0.317 Sum_probs=223.9
Q ss_pred EeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCC
Q 011971 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRD 269 (474)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~d 269 (474)
|+.........+. +|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +.+|++|+.|
T Consensus 51 ~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred cccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 3433444444443 899999999999999999999999999999999999999999999999999998 4799999999
Q ss_pred CcEEEEECcCCc------ceEeeecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEE-----ccCCCcEE
Q 011971 270 KSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKY-----CEHTAAVK 337 (474)
Q Consensus 270 g~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~-----~~h~~~V~ 337 (474)
+.|++||+.... .....+.+|...|.++.|+|+ +..|++|+.|++|++||+++++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999987532 234567899999999999996 457999999999999999999988877 57899999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE
Q 011971 338 AIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 415 (474)
+++|++....++++|+ .|+.|++||++ .+..+..+. +...|.+++|+|+++.|++ |+.|+.|++||+.+++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEE
Confidence 9999986566888876 89999999998 445666554 6778999999999999999 8899999999999999988
Q ss_pred EEcCCCc-------cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 416 TLTGHTF-------RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 416 ~l~~h~~-------~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.+..+.. .|.+++|+|+|++|++|+.||.|++||+..+..
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 8865432 489999999999999999999999999876653
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.5e-34 Score=290.78 Aligned_cols=272 Identities=18% Similarity=0.291 Sum_probs=246.1
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
..+.+++|+++.+++++.|+.|++||+.+++....+. +|...|.++.|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 236 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM 236 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 4588999988878888889999999999998877765 789999999996 6789999999999999999999999999
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE
Q 011971 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327 (474)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~ 327 (474)
+|...|.+++|+++.+++|+.||.|++||+++.. .+..+.+|...|.++.| ++.++++|+.|+.|++||+++++.+.
T Consensus 237 ~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 237 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 9999999999999999999999999999998876 67788899999999999 78899999999999999999999999
Q ss_pred EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
.+..|...+.++.+++. ++++|+ .|+.|++||+.+++.+..+. +...|.++.|+ ++++++ |+.||.|
T Consensus 314 ~~~~~~~~v~~~~~~~~---~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~v 384 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKDN---ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGTV 384 (445)
T ss_dssp EECCCCSCEEEEEEETT---EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSEE
T ss_pred EEcCCcccEEEEEEeCC---EEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE--EeCCCeE
Confidence 99999999999998643 666665 89999999999999988886 56779999995 577887 7899999
Q ss_pred EEEECCCCceeEEE-----cCCCccEEEEEECCCCCEEEEEeCCCc----EEEEeCCCCC
Q 011971 404 IVWRYPTMSKLATL-----TGHTFRVLYLAISPDGQTIVTGAGDET----LRFWNVFPSP 454 (474)
Q Consensus 404 ~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~l~t~s~Dg~----I~iW~l~~~~ 454 (474)
++||+.+++.+..+ .+|.+.|.+++|+|++.+|++|+.||+ |.+||+...+
T Consensus 385 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 385 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 99999999999888 478899999999999999999999998 9999998654
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-36 Score=299.69 Aligned_cols=274 Identities=17% Similarity=0.257 Sum_probs=214.4
Q ss_pred ceeeeeCCC-CcEEEEE-cCCeEEEEeCCCC--CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe---
Q 011971 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--- 241 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~--~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--- 241 (474)
.+++++|++ +++|+++ .|+.|+|||+.++ +....+. +|...|.+++|+|++++|++|+.||.|+|||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence 588999998 6666666 6899999999988 4444332 789999999999999999999999999999999877
Q ss_pred EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc--eEeeecC-cCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED--FVSKLSG-HKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
....+.+|...|.+++|+ +++|++|+.|+.|++||++.... ....+.. |...|.+++|+|++++|++|+.|+.|+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 677788999999999998 47999999999999999988753 3556666 999999999999999999999999999
Q ss_pred EEECC------------------CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eeee
Q 011971 317 VWNQH------------------STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCM 374 (474)
Q Consensus 317 iwd~~------------------~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~----~~~~ 374 (474)
+||+. .++.+..+ .|...|.+++|+|++..+++ ++ .|+.|++||+.+++. +..+
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY-AG--HDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE-EE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE-Ee--CCCcEEEEECCCCCCcceeeEee
Confidence 99985 24455666 89999999999999885554 44 799999999999887 5555
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------------ee------EEE
Q 011971 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS------------------------------KL------ATL 417 (474)
Q Consensus 375 ~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------------~~------~~l 417 (474)
. +...|.+++|+|++++|++ |+.++.+ +|+..... .+ ..+
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAA--GYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEE--ESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred cCCCCceEEEEEcCCCCEEEE--EcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 4 5667999999999998887 6555554 77664111 00 011
Q ss_pred ----------------cCCCccEEEEEECCCC-C---EEEEEeCCCcEEEEeC
Q 011971 418 ----------------TGHTFRVLYLAISPDG-Q---TIVTGAGDETLRFWNV 450 (474)
Q Consensus 418 ----------------~~h~~~V~~l~~spdg-~---~l~t~s~Dg~I~iW~l 450 (474)
..|...|+++++.+++ . .|+||+.||.|++||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1399999999976643 3 6999999999999986
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-35 Score=294.06 Aligned_cols=276 Identities=11% Similarity=0.115 Sum_probs=229.2
Q ss_pred eeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.+..|++ ++ +++++.++.|++||+.+++....+. +|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 44556666 44 4455568999999999888766543 789999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecC---cCCCEEEE---------------------EEec
Q 011971 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG---HKSEVCGL---------------------KWSY 301 (474)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l---------------------~~sp 301 (474)
+|...|.+++|+ +.+|++++.||.|++||+++.. .+..+.. |...|.++ +|+|
T Consensus 179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 999999999998 4799999999999999999876 4555543 44445544 4578
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeec--CC
Q 011971 302 DNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMD--TG 377 (474)
Q Consensus 302 d~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-~~~~~--~~ 377 (474)
++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++..++++|+ .|+.|++||+++++. +..+. +.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCC
Confidence 89999999999999999999998877775 48899999999999986777776 899999999998754 55554 55
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------ceeEEEcCCCccEEEEEECCCCC---EEEEEeCCCcE
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM---------SKLATLTGHTFRVLYLAISPDGQ---TIVTGAGDETL 445 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~t~s~Dg~I 445 (474)
..+..+.| ++++.|++ ++.|+.|++|++... .....+.+|...|.+++|+|++. .|++++.+|.+
T Consensus 336 ~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~ 412 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFC 412 (420)
T ss_dssp SCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred CCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceE
Confidence 66777755 57778887 889999999998763 23345667899999999999999 78888899999
Q ss_pred EEEeCCC
Q 011971 446 RFWNVFP 452 (474)
Q Consensus 446 ~iW~l~~ 452 (474)
.+|++..
T Consensus 413 ~~~~~~~ 419 (420)
T 3vl1_A 413 ALYNLSN 419 (420)
T ss_dssp EEEESCC
T ss_pred EEEeccC
Confidence 9999875
No 56
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=283.44 Aligned_cols=244 Identities=24% Similarity=0.417 Sum_probs=209.0
Q ss_pred CCCC-CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE---EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcC
Q 011971 206 GIDD-SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR---TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~-~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~---~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~ 279 (474)
+|.+ .|.+++|+|+|++||+|+.||+|+|||+.+++... ...+|...|.+++|++ ++|++|+.|+.|++||+..
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 6766 99999999999999999999999999998876432 2368999999999984 7999999999999999887
Q ss_pred Cc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---ceEEEccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 280 QE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ---PVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
.. ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++.+. .+..+..|...|.+++|+|++.. +++++
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s-- 169 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LASAS-- 169 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC-EEEEE--
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE-EEEEe--
Confidence 64 3567889999999999999999999999999999999998764 35667789999999999999874 55554
Q ss_pred CCCeEEEEECCCCcee--eeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---------------CceeEEE
Q 011971 356 ADRCIRFWNTTTNTHL--SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT---------------MSKLATL 417 (474)
Q Consensus 356 ~d~~I~iwd~~~~~~~--~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---------------~~~~~~l 417 (474)
.|+.|++||+.++... ..+. +...|.+++|+|++++|++ ++.|+.|+||+... ..++..+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 7999999999887533 3443 6678999999999999999 88999999999632 1334555
Q ss_pred cC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 418 TG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 418 ~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+ |...|.+++|+|++..|++++.|+.|++|++....
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 55 88999999999999999999999999999987654
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-34 Score=287.28 Aligned_cols=244 Identities=23% Similarity=0.417 Sum_probs=212.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCC------------------cEEEEEec--CCEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL------------------RVGALAWS--SSLLSS 265 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~------------------~V~~l~~~--~~~l~s 265 (474)
+|.+.|.+++|+|+|++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+ +.+|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6899999999999999999987 68999999999998888876542 48999998 479999
Q ss_pred EeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCC
Q 011971 266 GSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 266 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
|+.|+.|++||+.+.+ .+..+.+|...|.+++|+|++++|++|+.|++|++||+++++....+. +...+.+++|+|..
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 9999999999998876 577889999999999999999999999999999999999998887774 56789999999944
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011971 346 HGLLASGGGTADRCIRFWNTTTNTHLSCM--------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM------ 411 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 411 (474)
..++++|+ .|+.|++||+.++..+..+ .+...|.+++|+|+++.|++ |+.|+.|++||+.+.
T Consensus 219 ~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 219 GKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp CCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC---------
T ss_pred CCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECCCCCCcccc
Confidence 44777766 8999999999999887765 25678999999999999998 889999999999753
Q ss_pred ------ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 412 ------SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 412 ------~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.....+.+|...|.+++|+|++.+|++|+.|+.|++||+..+...
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 345677899999999999999999999999999999999877643
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-35 Score=289.76 Aligned_cols=244 Identities=20% Similarity=0.353 Sum_probs=204.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECc
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIR 278 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~ 278 (474)
.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+ +++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 3899999999999999999999999999999998764 567889999999999996 4799999999999999998
Q ss_pred CCc-ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCcc---eEEEccCCCcEEEEEECCCC-------
Q 011971 279 AQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHL------- 345 (474)
Q Consensus 279 ~~~-~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~------- 345 (474)
++. .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+..|...|.+++|+|+.
T Consensus 90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 764 345677899999999999998 78999999999999999987632 34456799999999999973
Q ss_pred ---------CcEEEEecCCCCCeEEEEECCCC---ceeeeec-CCCCeEEEEEcCCC----CeEEEEEecCCCeEEEEEC
Q 011971 346 ---------HGLLASGGGTADRCIRFWNTTTN---THLSCMD-TGSQVCNLVWSKNV----NELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 346 ---------~~ll~sg~Gt~d~~I~iwd~~~~---~~~~~~~-~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd~ 408 (474)
..+|++|+ .|+.|++||+..+ +++..+. |...|.+++|+|++ ..|++ ++.|+.|+||++
T Consensus 170 ~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~~ 245 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWTC 245 (316)
T ss_dssp -CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEEC
T ss_pred cccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEEc
Confidence 13677765 8999999999765 3444444 56789999999987 67777 889999999998
Q ss_pred CCCc----eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 409 PTMS----KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 409 ~~~~----~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.+.. ....+..|...|.+++|+|+|++|++++.|++|++|+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7631 2334567899999999999999999999999999999864
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-33 Score=287.82 Aligned_cols=274 Identities=23% Similarity=0.390 Sum_probs=243.9
Q ss_pred CcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 167 d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
+..+.++.++.+.+++++.|+.|++||+.+++....+. +|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 119 ~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~ 195 (445)
T 2ovr_B 119 DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL 195 (445)
T ss_dssp TSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 33467888887778888889999999999999887765 799999999998 679999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
.+|...|.+++|+++.+++|+.||.|++||+.+.. .+..+.+|...|.++.| ++++|++|+.||.|++||+++++.+
T Consensus 196 ~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 99999999999999999999999999999999876 57788899999999999 7889999999999999999999999
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
..+..|...|.+++| ++. .+++++ .|+.|++||+.+++.+..+. +...+.++.++ ++.+++ |+.||.|++
T Consensus 273 ~~~~~~~~~v~~~~~--~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~v 343 (445)
T 2ovr_B 273 HTLQGHTNRVYSLQF--DGI-HVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS--GNADSTVKI 343 (445)
T ss_dssp EEECCCSSCEEEEEE--CSS-EEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE--EETTSCEEE
T ss_pred EEecCCCCceEEEEE--CCC-EEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEE--EeCCCeEEE
Confidence 999999999999999 444 566655 79999999999999988876 45567777774 667877 789999999
Q ss_pred EECCCCceeEEEcC---CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 406 WRYPTMSKLATLTG---HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 406 wd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
||+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||+..+....
T Consensus 344 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence 99999999999986 88899999995 6799999999999999999876543
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=283.19 Aligned_cols=284 Identities=18% Similarity=0.251 Sum_probs=230.6
Q ss_pred cceeeeeCCC--Cc-EEEEEcCCeEEEEeCCCCCEEEEEe------------cCCCCCEEEEEEcC-CCCEEEEEeCCCc
Q 011971 168 FYLNLVDWSS--HN-VLAVGLGNCVYLWNACSSKVTKLCD------------LGIDDSVCSVGWAN-RNTHLAVGTSHGK 231 (474)
Q Consensus 168 ~~v~~l~~s~--~~-~la~~~d~~V~lwd~~~~~~~~~~~------------~~~~~~V~~v~~sp-~g~~la~gs~dg~ 231 (474)
-.+++++|++ ++ +++++.|+.|++||+.+++...... .+|...|.+++|+| ++.+|++|+.||.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 4599999997 34 4555568999999999886654443 14889999999999 7789999999999
Q ss_pred EEEecCCCCeEEEEecCCCCcEEEEEecC-----CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-E
Q 011971 232 VQIWDASRCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-E 305 (474)
Q Consensus 232 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~ 305 (474)
|++||+.+++.+..+. +...+.++.|.+ .++++|+.||.|.+||+++.. .+..+..|...|.+++|+|++. .
T Consensus 124 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 124 LKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCSCEEEEEECSSCTTE
T ss_pred EEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCCcEEEEEECCCCCcE
Confidence 9999999999888877 778899999973 389999999999999999876 5777889999999999999998 5
Q ss_pred EEEEeCCCcEEEEECCCCc-ceEEE---------------ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 306 LASGGNDNRLFVWNQHSTQ-PVLKY---------------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++..++ +++ .|+.|++||+.+++
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL-TVG--TDNRMRLWNSSNGE 278 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTTCC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE-Eec--CCCeEEEEECCCCc
Confidence 8999999999999998765 34444 46889999999999987555 444 79999999999987
Q ss_pred eeeeecCC------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 370 HLSCMDTG------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 370 ~~~~~~~~------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
........ ..+........+..+++ +..++.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF--VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp BCCCCCCCCCCCCSSCCCCEECCSSSSCEEE--EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred cceeccccccccccccceeEEecCCCceEEE--EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 65543311 12222222334455555 45789999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCC
Q 011971 444 TLRFWNVFPSPKSQN 458 (474)
Q Consensus 444 ~I~iW~l~~~~~~~~ 458 (474)
.|++|++........
T Consensus 357 ~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 357 NILAWVPSLYEPVPD 371 (408)
T ss_dssp CEEEEEECC------
T ss_pred eEEEEeCCCCCccCC
Confidence 999999998765543
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-33 Score=276.24 Aligned_cols=240 Identities=20% Similarity=0.299 Sum_probs=213.0
Q ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCC-----CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEEC
Q 011971 206 GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASR-----CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~-----~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~ 277 (474)
+|.+.|++++|+|++ ++|++|+.||+|++||+.. +..+..+.+|...|.+++|+ +.+|++|+.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 899999999999965 8999999999999999863 34677889999999999998 479999999999999999
Q ss_pred cCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC-----cEEEEe
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH-----GLLASG 352 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~ll~sg 352 (474)
.+++ .+..+.+|...|.+++|+|++.+|++|+.|++|++||++ ++.+..+.+|...|.+++|.|... .+++++
T Consensus 95 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 ATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTE-EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCC-eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 9876 577889999999999999999999999999999999996 556778889999999999999643 367776
Q ss_pred cCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC
Q 011971 353 GGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 353 ~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 431 (474)
+ .|+.|++||+.+++....+. +...|.+++|+|++++|++ |+.|+.|+|||+.+++.+..+..+ ..|.+++|+|
T Consensus 173 ~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 247 (319)
T 3frx_A 173 G--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS--AGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247 (319)
T ss_dssp E--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS
T ss_pred e--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC
Confidence 6 89999999999988777665 6778999999999999999 889999999999999999988765 5799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 011971 432 DGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 432 dg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
++.+|++++.+ .+++|++...
T Consensus 248 ~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 248 NRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp SSSEEEEEETT-EEEEEEETTE
T ss_pred CCCEEEEEcCC-CcEEEEeCcC
Confidence 99999988755 5999998764
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=291.75 Aligned_cols=277 Identities=11% Similarity=0.244 Sum_probs=223.7
Q ss_pred CCCCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCC-----------EEEEEecCCC------------CCEEEEEEcC
Q 011971 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-----------VTKLCDLGID------------DSVCSVGWAN 218 (474)
Q Consensus 164 ~~~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~-----------~~~~~~~~~~------------~~V~~v~~sp 218 (474)
+++.-.|.+++|++ +++|++| .|+.|+||++.+++ ....+. +|. +.|++++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcC
Confidence 44556799999999 5566555 68999999999876 344443 787 8899999999
Q ss_pred CC--CEEEEEeCCCcEEEecCCCCeEE---------------------------------------EE-ecCCCCcEEEE
Q 011971 219 RN--THLAVGTSHGKVQIWDASRCKRV---------------------------------------RT-MEGHRLRVGAL 256 (474)
Q Consensus 219 ~g--~~la~gs~dg~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V~~l 256 (474)
++ .+|++|+.||.|++||+.+++.. .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999998765432 12 36899999999
Q ss_pred EecC--CEEEEEeCCCcEEEEECcCCcceEe-------eecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcc-
Q 011971 257 AWSS--SLLSSGSRDKSILQRDIRAQEDFVS-------KLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP- 325 (474)
Q Consensus 257 ~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~- 325 (474)
+|++ .+|++| .|+.|++||++....... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9984 788888 899999999985443343 366899999999999998 9999999999999999999886
Q ss_pred ---eEEEccCCC------------cEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCC----------
Q 011971 326 ---VLKYCEHTA------------AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMDTGSQ---------- 379 (474)
Q Consensus 326 ---~~~~~~h~~------------~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~~~~~---------- 379 (474)
+..+..|.. .|.+++|+|++. ++++++ . +.|++||+++ ++++..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 788888876 899999999987 455554 5 9999999997 777777765443
Q ss_pred ------eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC---------------------------------C
Q 011971 380 ------VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG---------------------------------H 420 (474)
Q Consensus 380 ------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---------------------------------h 420 (474)
+..++|+|++++|++ |+.||.|++||+.+++.+. +.+ +
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred ccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccccc
Confidence 334999999999988 8899999999999887653 222 3
Q ss_pred CccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 421 TFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
...|..++|+|+|.+|++++.++ +++|.-
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 45689999999999999998775 777764
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-34 Score=279.11 Aligned_cols=247 Identities=24% Similarity=0.424 Sum_probs=202.0
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC--eEEEEe-cC-CCCcEEEEEecC--CEEEEEeCCCc
Q 011971 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTM-EG-HRLRVGALAWSS--SLLSSGSRDKS 271 (474)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~--~~~~~~-~~-h~~~V~~l~~~~--~~l~sgs~dg~ 271 (474)
+....+. +|.+.|.+++|+++ +||+|+.||.|+|||+..+ +.+..+ .+ |...|.+++|++ .+|++|+.|++
T Consensus 5 ~~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3444444 89999999999987 9999999999999999875 556666 45 999999999984 79999999999
Q ss_pred EEEEECcCC------cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----cceEEEccCCCcEEEEEE
Q 011971 272 ILQRDIRAQ------EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST----QPVLKYCEHTAAVKAIAW 341 (474)
Q Consensus 272 I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~ 341 (474)
|++||+... ......+.+|...|.+++|+|++++|++|+.|++|++||++.. +.+..+..|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999998542 1346678899999999999999999999999999999999532 456778899999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeec-CCCCeEEEEEcCC--CCeEEEEEecCCCeEEEEECCCC-----
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMD-TGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPTM----- 411 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~--~~~~~~~-~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~----- 411 (474)
+|++. +|++++ .|+.|++||..++ +++..+. +...|.++.|+|+ +..|++ |+.|+.|++||+...
T Consensus 162 ~p~~~-~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSEA-LLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSSS-EEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTSC
T ss_pred CCCCC-EEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCcccc
Confidence 99987 566665 8999999998776 4566664 6678999999998 556777 889999999998654
Q ss_pred ---ceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 412 ---SKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 412 ---~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.....+.+ |...|.+++|++++ +|++++.||+|++|++..+
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34455555 99999999999765 8999999999999998755
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.9e-35 Score=293.93 Aligned_cols=280 Identities=20% Similarity=0.296 Sum_probs=233.1
Q ss_pred cceeeeeCCCCcEEE---EEcCCeEEEEeCCCCCE----EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC
Q 011971 168 FYLNLVDWSSHNVLA---VGLGNCVYLWNACSSKV----TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 168 ~~v~~l~~s~~~~la---~~~d~~V~lwd~~~~~~----~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~ 239 (474)
...+.+++++..+.. ++.+|.|+||++..... ...+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 445678888854333 34589999999865422 1222 27899999999999 899999999999999999998
Q ss_pred C-------eEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeee--cCcCCCEEEEEEecCCCEEE
Q 011971 240 C-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELA 307 (474)
Q Consensus 240 ~-------~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spd~~~la 307 (474)
+ +.+..+.+|...|.+++|++ ++|++|+.||.|++||+++.. .+..+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEEE
Confidence 7 56788899999999999984 589999999999999999876 56667 78999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcceEEE-ccCCCc-EEEEEECCCCCcEEEEe-cCCCCCeEEEEECCCCce---eeeecCCCCeE
Q 011971 308 SGGNDNRLFVWNQHSTQPVLKY-CEHTAA-VKAIAWSPHLHGLLASG-GGTADRCIRFWNTTTNTH---LSCMDTGSQVC 381 (474)
Q Consensus 308 sg~~Dg~v~iwd~~~~~~~~~~-~~h~~~-V~~l~~sp~~~~ll~sg-~Gt~d~~I~iwd~~~~~~---~~~~~~~~~v~ 381 (474)
+++.|+.|++||+++++.+..+ ..|... +.+++|+|++. ++++| .++.|+.|++||++++.. ...+.+...+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 9999999999999999999888 678776 89999999976 66665 112799999999998764 33445677899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCce-eEEEcC--CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK-LATLTG--HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~--h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.++|+|+++.|+++ |..|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++..+
T Consensus 272 ~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 272 LPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 99999999999765 66899999999998874 444444 5689999999999988774 6779999999874
No 65
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.8e-34 Score=277.59 Aligned_cols=247 Identities=17% Similarity=0.312 Sum_probs=213.6
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----eEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEE
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRD 276 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd 276 (474)
.+|.+.|++++|+|++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+ +.+|++|+.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 389999999999999999999999999999999876 5777888999999999997 47999999999999999
Q ss_pred CcCCc--------ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCcceEEEc-------------cCC
Q 011971 277 IRAQE--------DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYC-------------EHT 333 (474)
Q Consensus 277 ~~~~~--------~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~~~~~~~~-------------~h~ 333 (474)
++... ..+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+. .|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 98763 346778899999999999999 9999999999999999998876543332 578
Q ss_pred CcEEEEEECCC--CCcEEEEecCCCCCeEEEEECCCCce--eeeec-CCCCeEEEEEcCCC----CeEEEEEecCCCeEE
Q 011971 334 AAVKAIAWSPH--LHGLLASGGGTADRCIRFWNTTTNTH--LSCMD-TGSQVCNLVWSKNV----NELVSTHGYSQNQII 404 (474)
Q Consensus 334 ~~V~~l~~sp~--~~~ll~sg~Gt~d~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~ 404 (474)
..+.+++|+|+ ...++++++ .|+.+.+|+...+.. +..+. +...|.+++|+|++ +.|++ |+.||.|+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~ 243 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIR 243 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEE
T ss_pred cceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEE
Confidence 89999999997 234666655 799998888887765 34443 56789999999998 67777 78999999
Q ss_pred EEECCCC----------------------------------------------ceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 405 VWRYPTM----------------------------------------------SKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 405 iwd~~~~----------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
+||+..+ +.+..+.+|...|.+++|+|+|++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9999764 667788899999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPK 455 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~ 455 (474)
|+.||.|++|++..+..
T Consensus 324 ~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EETTSCEEEEEECTTSC
T ss_pred ecCCCcEEEEecCcCcc
Confidence 99999999999987654
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-33 Score=275.19 Aligned_cols=242 Identities=24% Similarity=0.362 Sum_probs=203.9
Q ss_pred CCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEecCCC-------CeEEEEecCCCCcEEEEEecC--CEEEEEeCCC
Q 011971 206 GIDDSVCSVGW-----AN-RNTHLAVGTSHGKVQIWDASR-------CKRVRTMEGHRLRVGALAWSS--SLLSSGSRDK 270 (474)
Q Consensus 206 ~~~~~V~~v~~-----sp-~g~~la~gs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg 270 (474)
+|.+.|++++| ++ ++++|++|+.||+|+|||+.. +.....+.+|...|.+++|++ .+|++|+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 89999999999 76 899999999999999999874 356778899999999999984 7999999999
Q ss_pred cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc---cCCCcEEEEEECCCCC-
Q 011971 271 SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLH- 346 (474)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~- 346 (474)
+|++||++++. .+..+.+|...|.+++|+|++++|++|+.|++|++||+... ...... .|...|.+++|+|++.
T Consensus 99 ~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 99 TLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp EEEEEETTSSC-EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred cEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccc
Confidence 99999999876 57788999999999999999999999999999999999843 333333 6889999999999873
Q ss_pred --------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEE
Q 011971 347 --------GLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLAT 416 (474)
Q Consensus 347 --------~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~ 416 (474)
.++++++ .|+.|++||.. ......+ .+...|.+++|+|++++|++ |+.|+.|++||+.. ......
T Consensus 177 ~~~~~~~~~~l~s~~--~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 177 ANKVQPFAPYFASVG--WDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCCCSSCCEEEEEE--TTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEEEEESSCCSSCSEE
T ss_pred ccccCCCCCEEEEEc--CCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEEEEECCCCccccee
Confidence 4677776 89999999954 4444444 46778999999999999999 88999999999954 344444
Q ss_pred EcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 417 LTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
+ .+...|.+++|+|++.+|++ +.|+.|++|++......
T Consensus 252 ~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 252 F-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp E-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSC
T ss_pred e-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCC
Confidence 4 34567999999999987765 46888999999876543
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-33 Score=307.42 Aligned_cols=281 Identities=17% Similarity=0.266 Sum_probs=249.8
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-.+.+++|+| +.+|+++ .+|.|+|||..+++....+. +|...|++++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3499999999 5656555 58899999999998888776 7899999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~ 322 (474)
+.+|...|.+++|++ ..|++++.||.|++||+.........+.+|...|.+++|+| ++..|++++.||.|++||+.+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~ 172 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999984 68999999999999999987667788889999999999999 889999999999999999998
Q ss_pred CcceEEEccCC-CcEEEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEec
Q 011971 323 TQPVLKYCEHT-AAVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 323 ~~~~~~~~~h~-~~V~~l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 398 (474)
+.....+..+. ..+.+++|+| ++. ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|+++.+++ ++
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~ 247 (814)
T 3mkq_A 173 STPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GS 247 (814)
T ss_dssp SSCSEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EE
T ss_pred CcceeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE--Ee
Confidence 88887776655 8999999999 766 555554 79999999999999888877 5678999999999999998 78
Q ss_pred CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCE-EEEEeCCCcEEEEeCCCCC
Q 011971 399 SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQT-IVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 399 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-l~t~s~Dg~I~iW~l~~~~ 454 (474)
.||.|++||+.+++.+..+..|...|.+++|+|+|.. +++++.|+.+.+|++....
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999873 2445557778999987654
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5e-33 Score=284.75 Aligned_cols=273 Identities=16% Similarity=0.245 Sum_probs=238.3
Q ss_pred CcceeeeeCCCC-cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEecCCCCe--
Q 011971 167 DFYLNLVDWSSH-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--NRNTHLAVGTSHGKVQIWDASRCK-- 241 (474)
Q Consensus 167 d~~v~~l~~s~~-~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s--p~g~~la~gs~dg~I~iwd~~~~~-- 241 (474)
...+.+++|+++ .+++++.|+.|++||+.+++....+. +|.+.|.+++|+ +++.+|++|+.||.|++||+.+..
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 456999999985 55666679999999999998877764 789999999999 577899999999999999998765
Q ss_pred ---------------------EEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe
Q 011971 242 ---------------------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (474)
Q Consensus 242 ---------------------~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (474)
.+..+.+|...|.++..++++|++|+.||.|++||+++.. .+..+.+|...|.+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYD 319 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEE
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEc
Confidence 3567889999999999999999999999999999998876 677888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCe
Q 011971 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v 380 (474)
|++++|++|+.||.|++||+++++.+..+..|...|.+++|++ .++++++ .|+.|++||+.++.......+...+
T Consensus 320 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~ 394 (464)
T 3v7d_B 320 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLS 394 (464)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEEEEECTTCC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceeeeecCCCCc
Confidence 9999999999999999999999999999999999999999984 3666665 8999999999999988888888889
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE-EcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT-LTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
..++|+++++.+++ |+ ++.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 395 ~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 395 AITTFYVSDNILVS--GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEEEEECSSEEEE--EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999999999888 65 89999999999999886 66889999999997 3345555566776655543
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=278.94 Aligned_cols=242 Identities=19% Similarity=0.328 Sum_probs=210.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC--CCeEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECcC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~ 279 (474)
+|.+.|++++|+|++++||+|+.||.|+|||+. +.+.+..+.+|...|.+++|+ +.+|++|+.||.|++||+..
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 799999999999999999999999999999998 667888899999999999997 58999999999999999988
Q ss_pred Cc-ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC--cceEEEccCCCcEEEEEECCC----------
Q 011971 280 QE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPH---------- 344 (474)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~---------- 344 (474)
.. ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.. .....+..|...|.+++|+|.
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 65 246677889999999999999 999999999999999999887 345566789999999999994
Q ss_pred ---CCcEEEEecCCCCCeEEEEECCCCcee----eeec-CCCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCCc-
Q 011971 345 ---LHGLLASGGGTADRCIRFWNTTTNTHL----SCMD-TGSQVCNLVWSKN---VNELVSTHGYSQNQIIVWRYPTMS- 412 (474)
Q Consensus 345 ---~~~ll~sg~Gt~d~~I~iwd~~~~~~~----~~~~-~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~- 412 (474)
+. ++++++ .|+.|++||++++... ..+. +...|.+++|+|+ +++|++ ++.||.|++||+.++.
T Consensus 169 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 169 TKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp -CTTC-EEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTTS
T ss_pred CCCCC-EEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEEeCCCCCc
Confidence 55 666665 7999999999876532 3333 5678999999999 788888 7899999999998864
Q ss_pred --eeEEE--cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 413 --KLATL--TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 413 --~~~~l--~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
....+ ..|...|.+++|+|+|++|++++.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 22222 34889999999999999999999999999999984
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-33 Score=293.79 Aligned_cols=277 Identities=15% Similarity=0.225 Sum_probs=246.5
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCC----CEEEEEecCCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEecCC
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSS----KVTKLCDLGIDDS-VCSVGWAN--RNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~----~~~~~~~~~~~~~-V~~v~~sp--~g~~la~gs~dg~I~iwd~~ 238 (474)
...+.+++|++ +++|+++.++.|+|||+.++ +....+. +|.+. |++++|+| ++++|++|+.||.|+|||+.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 44589999999 77888888999999999988 6666664 78899 99999999 99999999999999999997
Q ss_pred CC--------eEEEEecCCCCcEEEEEecC--CEEEEEeCC----CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 239 RC--------KRVRTMEGHRLRVGALAWSS--SLLSSGSRD----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 239 ~~--------~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
++ +.+..+..|...|.+++|++ .+|++++.+ +.|.+||. .. .+..+.+|...|.+++|+|++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~ 173 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQSRP 173 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSSSS
T ss_pred CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCCCC
Confidence 54 77788889999999999984 689999988 68888883 33 5778889999999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCcceEEEccCCC---cEEEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeee-----
Q 011971 305 -ELASGGNDNRLFVWNQHSTQPVLKYCEHTA---AVKAIAWSPH-LHGLLASGGGTADRCIRFWNTTTNTHLSCM----- 374 (474)
Q Consensus 305 -~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~----- 374 (474)
.|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +. ++++++ .|+.|++||+.+++.+..+
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVG--SDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEE--TTCCEEEEETTTCCEEEECCBTTB
T ss_pred cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-EEEEEe--CCCeEEEEECCCCCEeEEeccccc
Confidence 899999999999999999999999999999 9999999999 76 555554 7999999999999999988
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC----CccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 375 DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH----TFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 375 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
.+...|.++.|+ +++.|++ ++.|+.|++||+.+++.+..+..+ ...+.++.|+ ++.+|++++.||.|++||+
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEE--EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred ccCCceEEEEEc-CCCEEEE--EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 677889999999 9999998 779999999999999999998876 4678888886 8899999999999999999
Q ss_pred CCCC
Q 011971 451 FPSP 454 (474)
Q Consensus 451 ~~~~ 454 (474)
..+.
T Consensus 327 ~~~~ 330 (615)
T 1pgu_A 327 GHDE 330 (615)
T ss_dssp TEEE
T ss_pred CCCc
Confidence 8644
No 71
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.7e-33 Score=284.86 Aligned_cols=256 Identities=20% Similarity=0.421 Sum_probs=220.1
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCC----------CeEEEEecCCCCcEEEEEecC--C-
Q 011971 196 SSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR----------CKRVRTMEGHRLRVGALAWSS--S- 261 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~~~--~- 261 (474)
++++.......|.+.|++++|+|+ +.+||+|+.+|.|+|||+.+ .+.+..+.+|...|.+++|++ .
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 344443444578999999999997 68999999999999999986 577888899999999999985 3
Q ss_pred EEEEEeCCCcEEEEECcCCcc------eEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC---cceEEEcc
Q 011971 262 LLSSGSRDKSILQRDIRAQED------FVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST---QPVLKYCE 331 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~---~~~~~~~~ 331 (474)
+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999987331 1355678999999999999 7789999999999999999987 57788889
Q ss_pred CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 332 h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
|...|.+++|+|++..++++|+ .|+.|++||+++ ...+..+. +...|.+++|+|+++.++++ ++.|+.|+|||+.
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWDLS 352 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEEGG
T ss_pred CCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEeCC
Confidence 9999999999999998898887 899999999998 45566665 67889999999999764444 6789999999998
Q ss_pred C--------------CceeEEEcCCCccEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCC
Q 011971 410 T--------------MSKLATLTGHTFRVLYLAISPDGQ-TIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 410 ~--------------~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~l~~~~ 454 (474)
. .+.+..+.+|...|.+++|+|++. +|++++.||.|++|++....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 6 367788889999999999999999 89999999999999997643
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-33 Score=271.57 Aligned_cols=269 Identities=13% Similarity=0.112 Sum_probs=228.0
Q ss_pred CcceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCC----EEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecC-C
Q 011971 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDA-S 238 (474)
Q Consensus 167 d~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~----~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~-~ 238 (474)
.-.+.+++|++ +. +++++.|+.|+||++.+++ ..... +|...|.+++|+|+++ +|++|+.||.|++||+ .
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 34599999998 44 5555678999999999887 43333 7889999999999999 9999999999999999 7
Q ss_pred CCeEEEEecC--CCCcEEEEEec-CCEEEEEeCCCcEEEEECcC---------CcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 239 RCKRVRTMEG--HRLRVGALAWS-SSLLSSGSRDKSILQRDIRA---------QEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 239 ~~~~~~~~~~--h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
+++. ..+.+ |...|.+++|+ ++.|++++.|+.|++||++. .. .+..+. |...|.+++|++++ +
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~--l 163 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR--L 163 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE--E
T ss_pred CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc--E
Confidence 7654 77788 99999999999 68999999999999999986 44 344444 88999999999887 9
Q ss_pred EEEeCCCcEEEEECCC-Cc--ceEEEccCCCcEEEEEECC-CCCcEEEEecCCCCCeEEEEECCCC------ceeeeecC
Q 011971 307 ASGGNDNRLFVWNQHS-TQ--PVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN------THLSCMDT 376 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~------~~~~~~~~ 376 (474)
++++.|+.|++||+++ +. .......|...|.+++|+| ++. ++++++ .|+.|++|++... +....+..
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred EEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceeeec
Confidence 9999999999999998 54 3334557889999999999 887 555554 7999999999876 55555543
Q ss_pred C----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEEeCCCc-
Q 011971 377 G----------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTGAGDET- 444 (474)
Q Consensus 377 ~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~s~Dg~- 444 (474)
. ..|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+| ...|.+++ |+|.+|++++.||+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 2 38999999999999998 789999999999999999999998 99999999 99999999999998
Q ss_pred EEEEe
Q 011971 445 LRFWN 449 (474)
Q Consensus 445 I~iW~ 449 (474)
.+.|.
T Consensus 317 ~~~~~ 321 (342)
T 1yfq_A 317 KTNAA 321 (342)
T ss_dssp HHCSS
T ss_pred ccccc
Confidence 54444
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-33 Score=317.06 Aligned_cols=278 Identities=22% Similarity=0.313 Sum_probs=249.9
Q ss_pred CcceeeeeCCC-CcEEEE-EcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~-~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
...+++++|++ +.++++ +.|+.|++||..+++....+. +|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 34599999998 555554 568999999999999888775 799999999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+.+|...|.+++|++ .++++|+.|+.|++||++++. ....+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 9999999999999974 489999999999999999877 67788899999999999999999999999999999999
Q ss_pred CCCcceEEEcc-------------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeEEEEE
Q 011971 321 HSTQPVLKYCE-------------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVW 385 (474)
Q Consensus 321 ~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~ 385 (474)
.+++....+.. +...+.+++|+|++..+++.+ ++.+.+||+.++..+..+. +...+.+++|
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 98877666532 234788999999998665543 7899999999999887774 5678999999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 386 s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+|+++.+++ ++.++.|++|++.++..+..+.+|...|.+++|+|+|.+|++++.||.|++|++..
T Consensus 849 sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 849 SPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred cCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 999999999 88999999999999999999999999999999999999999999999999999764
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-33 Score=280.62 Aligned_cols=256 Identities=19% Similarity=0.304 Sum_probs=217.6
Q ss_pred eCCCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeEEEEec--CCCCcEEEEEecC---CEEEEE
Q 011971 193 NACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTME--GHRLRVGALAWSS---SLLSSG 266 (474)
Q Consensus 193 d~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~~~---~~l~sg 266 (474)
+....+....+. +|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|++ ++|+++
T Consensus 59 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 59 SLKSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHTTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred cccccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 334444444443 789999999999999 999999999999999999888777765 6999999999986 689999
Q ss_pred eCCCcEEEEECcCCcceEeeec---CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECC
Q 011971 267 SRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (474)
+.|+.|++||++.. ....+. .|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|...|.+++|+|
T Consensus 138 ~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 138 SIRGATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp ETTTEEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred eCCCEEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999999863 344443 34588999999999999999999999999999 5778889999999999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCC----CceeeeecCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceeEEEc
Q 011971 344 HLHGLLASGGGTADRCIRFWNTTT----NTHLSCMDTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 344 ~~~~ll~sg~Gt~d~~I~iwd~~~----~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
++..++++++ .|+.|++||+++ +..+..+.+...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.
T Consensus 215 ~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 215 RCDWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT--TDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp SCTTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE--EESSSEEEEEETTBTTSCSEEE
T ss_pred CCCCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE--EcCCCcEEEEECCCCccccccc
Confidence 9987888876 899999999998 67777788889999999999 9999998 7799999999999988877776
Q ss_pred CCC-----------------ccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 419 GHT-----------------FRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 419 ~h~-----------------~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
+|. ..+..++|+|||++ +|+.||.|++||+..+.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 553 34555777777776 778999999999988765433
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8e-33 Score=292.23 Aligned_cols=275 Identities=16% Similarity=0.247 Sum_probs=226.9
Q ss_pred ceeeeeCCCC--c-EEEEEcCCeEEEEeCCCCCEEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE
Q 011971 169 YLNLVDWSSH--N-VLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 169 ~v~~l~~s~~--~-~la~~~d~~V~lwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
.+.+++|+++ + +++++.++.|++||+.+++....+.. .|...|.+++|+ ++.+|++++.||.|++||+.+++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 5899999975 4 45556789999999999998877633 789999999999 999999999999999999999999
Q ss_pred EEEecCC----CCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC---------------
Q 011971 243 VRTMEGH----RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--------------- 302 (474)
Q Consensus 243 ~~~~~~h----~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--------------- 302 (474)
+..+..+ ...+.++.|. +..+++++.||.|++||+.... .+..+.+|...|.+++| |+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence 9988876 4678888884 7899999999999999998754 34455555444444443 22
Q ss_pred --------------------------------------------------------------------------------
Q 011971 303 -------------------------------------------------------------------------------- 302 (474)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (474)
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence
Q ss_pred -----------CCEEEEEeC-CCcEEEEECCCCcce-EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 303 -----------NRELASGGN-DNRLFVWNQHSTQPV-LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 303 -----------~~~lasg~~-Dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
+++|++++. |+.|++||+.+++.. ..+..|...|.+++|+|++. ++++++ .|+.|++||+.+++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGD--VMGKILLYDLQSRE 521 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTE
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC-EEEEcC--CCCeEEEeeCCCCc
Confidence 344555555 666666666554443 45567899999999999988 555554 79999999999999
Q ss_pred eeeeec--CCCCeEEEEEcC----------CCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECCCCCEE
Q 011971 370 HLSCMD--TGSQVCNLVWSK----------NVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISPDGQTI 436 (474)
Q Consensus 370 ~~~~~~--~~~~v~~l~~s~----------~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l 436 (474)
.+..+. +...|.+++|+| ++++|++ ++.|+.|++||+.++ +.+..+.+|...|.+++|+|++. |
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 598 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEE--EcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-e
Confidence 988876 778899999999 9999999 889999999999998 78889999999999999999999 9
Q ss_pred EEEeCCCcEEEEeCCC
Q 011971 437 VTGAGDETLRFWNVFP 452 (474)
Q Consensus 437 ~t~s~Dg~I~iW~l~~ 452 (474)
++++.||+|++|++..
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=308.10 Aligned_cols=157 Identities=11% Similarity=0.182 Sum_probs=135.3
Q ss_pred CcceeeeeCCCCc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE--
Q 011971 167 DFYLNLVDWSSHN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV-- 243 (474)
Q Consensus 167 d~~v~~l~~s~~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~-- 243 (474)
...|.+++|+++. +++++.|+.|+|||+.+++....+. |.+.|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 3469999999976 6666779999999999999877764 6689999999999999999999999999999988764
Q ss_pred ---------EEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCc------------------CCC
Q 011971 244 ---------RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH------------------KSE 293 (474)
Q Consensus 244 ---------~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------------------~~~ 293 (474)
..+.+|...|.+++|++ ..|++|+.||.| +||+++.. .+..+..| ...
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eEEEEecccCCcCCCcccccccccccCCC
Confidence 23467999999999997 489999999999 99999876 45555544 578
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE
Q 011971 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~ 327 (474)
|.+++|+|+|++|++|+.||.|++||+++++++.
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 9999999999999999999999999998877654
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-33 Score=278.42 Aligned_cols=278 Identities=13% Similarity=0.113 Sum_probs=212.4
Q ss_pred CcceeeeeCCC-CcEEEEEcC--------CeEEEEeCCCCCE--------EEEEec-CCCCCEEEEEEcCCCCEEEEEe-
Q 011971 167 DFYLNLVDWSS-HNVLAVGLG--------NCVYLWNACSSKV--------TKLCDL-GIDDSVCSVGWANRNTHLAVGT- 227 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d--------~~V~lwd~~~~~~--------~~~~~~-~~~~~V~~v~~sp~g~~la~gs- 227 (474)
+|.|.+++|++ +.+|++|.+ +.|++|++..+.. ...+.+ +|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 46799999998 667777643 2599999876532 122223 677788888775 55677664
Q ss_pred ----------CCCcEEEecCCCCe----EEEEec-----CCCCcEEEEEecC--CEEE--EEeCCCcEEEEECcCCcceE
Q 011971 228 ----------SHGKVQIWDASRCK----RVRTME-----GHRLRVGALAWSS--SLLS--SGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 228 ----------~dg~I~iwd~~~~~----~~~~~~-----~h~~~V~~l~~~~--~~l~--sgs~dg~I~iwd~~~~~~~~ 284 (474)
.|+.+++|++.... .+.... .+...+.+++|++ .+|+ +++.|++|++||+.+.. .+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EE
Confidence 46779999876542 122221 3455688999985 5655 45578999999999876 34
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCCCC----
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADR---- 358 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~---- 358 (474)
..+ .|...|.+++|+|||++|++++.+ .+.+|+..+++.+.. ...|...|.+++|+|++..+++.+ .|+
T Consensus 171 ~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~~ 245 (365)
T 4h5i_A 171 FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGKGI 245 (365)
T ss_dssp EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCCE
T ss_pred EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCccee
Confidence 444 477889999999999999999855 567777777765543 346888999999999988665544 344
Q ss_pred eEEEEECCCCcee----ee-ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-cCCCccEEEEEECCC
Q 011971 359 CIRFWNTTTNTHL----SC-MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL-TGHTFRVLYLAISPD 432 (474)
Q Consensus 359 ~I~iwd~~~~~~~----~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spd 432 (474)
.+++||+...... .. ..+...|.+++|+|+|++|++ |+.|+.|+|||+.+++++..+ .+|...|++|+|+||
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT
T ss_pred EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC
Confidence 6889998776542 12 235678999999999999999 889999999999999999886 789999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 011971 433 GQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|++|++|+.|++|+||++....
T Consensus 324 g~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 324 STYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SCEEEEEETTSEEEEEECCTTT
T ss_pred CCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999999999999996543
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.1e-32 Score=266.13 Aligned_cols=237 Identities=20% Similarity=0.358 Sum_probs=197.6
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCC--CEEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEecCCCCe
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~--~~~~~~~~~~~~~V~~v~~sp~--g~~la~gs~dg~I~iwd~~~~~ 241 (474)
-.|.+++|++ ++ +++++.|+.|+|||+.++ +....+. +|.+.|.+++|+++ +++|++|+.||+|+|||+.+++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 3589999998 44 455556899999999754 4444443 89999999999864 8999999999999999998774
Q ss_pred --EEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcc-eEeeecCcCCCEEEEEEecC------------
Q 011971 242 --RVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYD------------ 302 (474)
Q Consensus 242 --~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd------------ 302 (474)
.+..+.+|...|.+++|++ .+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 5677889999999999985 5899999999999999987642 24567889999999999997
Q ss_pred -CCEEEEEeCCCcEEEEECCCCc----ceEEEccCCCcEEEEEECCCC--CcEEEEecCCCCCeEEEEECCCCc---eee
Q 011971 303 -NRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNT---HLS 372 (474)
Q Consensus 303 -~~~lasg~~Dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~--~~ll~sg~Gt~d~~I~iwd~~~~~---~~~ 372 (474)
+++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ ..++++++ .|++|++||+.+.. ...
T Consensus 169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~~ 246 (297)
T 2pm7_B 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKKT 246 (297)
T ss_dssp -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEE
T ss_pred CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCcccee
Confidence 5799999999999999998765 556788999999999999996 45788876 89999999998743 112
Q ss_pred ee---cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 373 CM---DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 373 ~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
.+ .+...|.+++|+|+++.|++ ++.|+.|+||+..
T Consensus 247 ~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 247 LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 22 34677999999999999999 7799999999976
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-34 Score=284.35 Aligned_cols=240 Identities=16% Similarity=0.208 Sum_probs=202.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC--eEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc-
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE- 281 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~- 281 (474)
+.+.|++++|+|+|++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|++ ++|++++.|+.|++||+.+..
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 4678999999999999999999999999999988 78888999999999999984 799999999999999998765
Q ss_pred -ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---ceEEEcc-CCCcEEEEEECCCCCcEEEEecCCC
Q 011971 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ---PVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~---~~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
.....+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ....+.. |...|.+++|+|++. ++++++ .
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~--~ 166 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGC--A 166 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEE--S
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEe--C
Confidence 2456678899999999999999999999999999999999887 4677777 999999999999987 556655 7
Q ss_pred CCeEEEEECC------------------CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----e
Q 011971 357 DRCIRFWNTT------------------TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK----L 414 (474)
Q Consensus 357 d~~I~iwd~~------------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~----~ 414 (474)
|+.|++||+. .++++..+.+...|.+++|+|++++|++ ++.|+.|++||+.+++. +
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY--AGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE--EETTTEEC-CEECSTTSCEEEC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE--EeCCCcEEEEECCCCCCcceee
Confidence 9999999985 3445555567788999999999999999 78999999999999887 7
Q ss_pred EEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 415 ATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 415 ~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
..+.+|...|.+++|+|+|++|++|+.|+.+ +|+...
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 8889999999999999999999988766655 676653
No 80
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=286.61 Aligned_cols=244 Identities=15% Similarity=0.248 Sum_probs=206.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-----------EEEEecCCC------------CcEEEEEecC--
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----------RVRTMEGHR------------LRVGALAWSS-- 260 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~V~~l~~~~-- 260 (474)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 578889998 8899999984
Q ss_pred --CEEEEEeCCCcEEEEECcCCcce--------------------------------------E-eeecCcCCCEEEEEE
Q 011971 261 --SLLSSGSRDKSILQRDIRAQEDF--------------------------------------V-SKLSGHKSEVCGLKW 299 (474)
Q Consensus 261 --~~l~sgs~dg~I~iwd~~~~~~~--------------------------------------~-~~~~~h~~~V~~l~~ 299 (474)
..|++++.|+.|++||+...... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 47999999999999998764311 1 113679999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC-cceE-------EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-
Q 011971 300 SYDNRELASGGNDNRLFVWNQHST-QPVL-------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH- 370 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~-~~~~-------~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~- 370 (474)
+|++++|++| .|+.|++||++.. +.+. .+..|...|.+++|+|++..++++|+ .|+.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCCccc
Confidence 9999999999 7999999999844 3333 24579999999999999856777776 899999999999886
Q ss_pred ---eeeecCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEcCCCcc----------
Q 011971 371 ---LSCMDTGS-------------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLTGHTFR---------- 423 (474)
Q Consensus 371 ---~~~~~~~~-------------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~---------- 423 (474)
+..+.... .|.+++|+|++++|++ ++. +.|++||+.+ ++.+..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 55665433 8999999999999998 666 9999999997 8888888888642
Q ss_pred -----EEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 424 -----VLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 424 -----V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+..++|+|+|++|++|+.||.|++||+..+..
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999987754
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-32 Score=275.25 Aligned_cols=244 Identities=17% Similarity=0.268 Sum_probs=217.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe------EEEEecCCCCcEEEEEec------C---CEEEEEeCCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK------RVRTMEGHRLRVGALAWS------S---SLLSSGSRDK 270 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~~------~---~~l~sgs~dg 270 (474)
+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|+ + .+|++++.||
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 7999999999998 799999999999999999887 788888999999999997 4 6899999999
Q ss_pred cEEEEECcCCcc----eEeeecCc-----CCCEEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------CcceE---
Q 011971 271 SILQRDIRAQED----FVSKLSGH-----KSEVCGLKWS----YDNRE-LASGGNDNRLFVWNQHS------TQPVL--- 327 (474)
Q Consensus 271 ~I~iwd~~~~~~----~~~~~~~h-----~~~V~~l~~s----pd~~~-lasg~~Dg~v~iwd~~~------~~~~~--- 327 (474)
.|++||+..... ....+..| ...|.+++|+ |++++ |++|+.||.|++||+++ ++.+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999999987762 16677788 5999999999 99999 99999999999999998 66665
Q ss_pred --EE-------ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeEEEEEcCCCCe
Q 011971 328 --KY-------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-------GSQVCNLVWSKNVNE 391 (474)
Q Consensus 328 --~~-------~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~~ 391 (474)
.+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...|.+++|+|++++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 66 4589999999999998 666665 899999999999999888876 788999999999999
Q ss_pred EEEEEecCC---CeEEEEECCCCceeEEEcC-------------CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 392 LVSTHGYSQ---NQIIVWRYPTMSKLATLTG-------------HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 392 l~~~~g~~d---g~I~iwd~~~~~~~~~l~~-------------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|++ ++.| +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||+..+..
T Consensus 248 l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 248 LAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 998 7788 9999999999999999998 999999999999999999999999999999987654
Q ss_pred CC
Q 011971 456 SQ 457 (474)
Q Consensus 456 ~~ 457 (474)
..
T Consensus 326 ~~ 327 (397)
T 1sq9_A 326 IT 327 (397)
T ss_dssp EE
T ss_pred eE
Confidence 33
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=277.23 Aligned_cols=278 Identities=17% Similarity=0.150 Sum_probs=230.9
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCC---EEEEEec---------------------------------------
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---VTKLCDL--------------------------------------- 205 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~---~~~~~~~--------------------------------------- 205 (474)
.+.+++|++ +++|+++.++.|++||+.+++ ....+..
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 467889998 778888999999999999998 4444331
Q ss_pred --------------CCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCC--CCeEEEEec--CCCCcEEEEEecC--CEEE
Q 011971 206 --------------GIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDAS--RCKRVRTME--GHRLRVGALAWSS--SLLS 264 (474)
Q Consensus 206 --------------~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~--~~~~~~~~~--~h~~~V~~l~~~~--~~l~ 264 (474)
+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|++ .+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 123369999999999996 889999999999999 888888876 5778999999984 7999
Q ss_pred EEeCCCcEEEEECcCCcc---eEeeecCcCCCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCcceEE-EccCCCcEE
Q 011971 265 SGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHSTQPVLK-YCEHTAAVK 337 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd---~~~lasg~~Dg~v~iwd~~~~~~~~~-~~~h~~~V~ 337 (474)
+|+.+|.|++|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 999999999999987652 22367789999999999999 99999999999999999999988877 558999999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------------------------CCCeEEEEEcCCCCe
Q 011971 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------------------------GSQVCNLVWSKNVNE 391 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--------------------------~~~v~~l~~s~~~~~ 391 (474)
+++|+ ++. ++++++ .|+.|++||+.+++++..+.. ...+..+.|+|++++
T Consensus 246 ~~~~s-d~~-~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 246 SICCG-KDY-LLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEEC-STT-EEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEEEC-CCC-EEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999 776 556665 799999999999998877652 246899999999999
Q ss_pred EEEEEecCCCeEEEEEC--CCC---ceeEEEcCCCccEEEEEECCCCCEEEEE-eC------CCcEEEEeCCCC
Q 011971 392 LVSTHGYSQNQIIVWRY--PTM---SKLATLTGHTFRVLYLAISPDGQTIVTG-AG------DETLRFWNVFPS 453 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~--~~~---~~~~~l~~h~~~V~~l~~spdg~~l~t~-s~------Dg~I~iW~l~~~ 453 (474)
++++ +..++.|+||++ ... +.+..+.+| ..|.+++|+|++ ++++. +. +..|.+|.+...
T Consensus 322 l~~~-~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 322 VAFF-VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEE-ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEE-ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEcC
Confidence 9984 237999999999 555 677788888 889999999965 44444 32 556899987654
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-32 Score=271.18 Aligned_cols=241 Identities=15% Similarity=0.228 Sum_probs=213.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (474)
.|.+.|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ +++|++++.||.|++||+....
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 478899999999999999999999999999999987 888999999999999998 5799999999999999998765
Q ss_pred c-eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc---eEEE-ccCCCcEEEEEECCCCCcEEEEecCCC
Q 011971 282 D-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP---VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 282 ~-~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~---~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
. ....+..|...|.+++|+|++++|++|+.|+.|++||++.++. ...+ ..|...|.+++|+|++. ++++++ .
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~ 162 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGS--C 162 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEE--T
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEc--C
Confidence 2 2334577999999999999999999999999999999988763 2333 56899999999999987 555554 7
Q ss_pred CCeEEEEECC------------------CCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 357 DRCIRFWNTT------------------TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 357 d~~I~iwd~~------------------~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
|+.|++||+. .++.+..+. +...|.+++|+|+++.|++ ++.|+.|++||+.+++.+..+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCCEEEEEECCCCceeEEE
Confidence 9999999954 567777764 5678999999999999999 779999999999999999999
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 418 ~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
..|...|.+++|+|++.+|++| .|+.|++|++..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999888877 999999999987
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=269.55 Aligned_cols=255 Identities=15% Similarity=0.264 Sum_probs=214.7
Q ss_pred CCEEEEEecCCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEecCCCCeEEEEe-cCCCCcEEEEEecC-----CEEEEE
Q 011971 197 SKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTS---HGKVQIWDASRCKRVRTM-EGHRLRVGALAWSS-----SLLSSG 266 (474)
Q Consensus 197 ~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~gs~---dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~~~-----~~l~sg 266 (474)
.+.......+|.+.|.+++|+|++..+ ++|+. ||.|+|||+.+++..... .+|...|.+++|++ .+|++|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 344444434799999999999999655 55655 899999999988766543 37999999999984 789999
Q ss_pred eCCCcEEEEECcCCcceEeeecCcCCCEEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc-ceEEEccCCC----c
Q 011971 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW------SYDNRELASGGNDNRLFVWNQHSTQ-PVLKYCEHTA----A 335 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------spd~~~lasg~~Dg~v~iwd~~~~~-~~~~~~~h~~----~ 335 (474)
+.||.|++||+......+..+.+|...|.++.| +|++++|++|+.|+.|++||+++++ .+..+..|.. .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999999877567888899999999965 6799999999999999999999887 7788866555 8
Q ss_pred EEEEE----ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcC---CCCeEEEEEecCCCeEEEEEC
Q 011971 336 VKAIA----WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK---NVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 336 V~~l~----~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~ 408 (474)
+.+++ |+|++. ++++++ .|+.|++||+++++......+...|.+++|+| ++..+++ ++.++.|++||+
T Consensus 167 v~~~~~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~ 241 (357)
T 3i2n_A 167 CWTVAFGNAYNQEER-VVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEEECCCC-CCC-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTTEEEEEEE
T ss_pred eEEEEEEeccCCCCC-EEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCCeEEEEeC
Confidence 99998 678877 555554 79999999999999888888899999999999 8999998 789999999999
Q ss_pred CCCceeEEEc-----CCCccEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCC
Q 011971 409 PTMSKLATLT-----GHTFRVLYLAISPDGQ-TIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 409 ~~~~~~~~l~-----~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+++.+..+. +|...|.+++|+|++. +|++++.||.|++|++......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 8776554444 8999999999999998 8999999999999999876544
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-32 Score=310.65 Aligned_cols=289 Identities=20% Similarity=0.281 Sum_probs=247.2
Q ss_pred CcceeeeeCCC-CcEE-EEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCCCeE
Q 011971 167 DFYLNLVDWSS-HNVL-AVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 167 d~~v~~l~~s~-~~~l-a~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
...+.+++|++ +++| +++.|+.|+|||+.+++....+. +|...|.+++|+| ++.++++|+.||.|++||+.+++.
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 34689999998 4444 45568999999999999888776 7899999999999 556899999999999999999999
Q ss_pred EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceE------------------------------------
Q 011971 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV------------------------------------ 284 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~------------------------------------ 284 (474)
+..+.+|...|.+++|++ ..|++|+.||.|++||+++.....
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 999999999999999984 799999999999999987653110
Q ss_pred ------------------eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC
Q 011971 285 ------------------SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (474)
Q Consensus 285 ------------------~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (474)
....+|...|.+++|+|++.++++|+.||.|++||+.++..+..+.+|...|.+++|+|++.
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence 01126788999999999999999999999999999999999999999999999999999988
Q ss_pred cEEEEecCCCCCeEEEEECCCCce--------------------------------------eeeecCCCCeEEEEEcCC
Q 011971 347 GLLASGGGTADRCIRFWNTTTNTH--------------------------------------LSCMDTGSQVCNLVWSKN 388 (474)
Q Consensus 347 ~ll~sg~Gt~d~~I~iwd~~~~~~--------------------------------------~~~~~~~~~v~~l~~s~~ 388 (474)
.++ +++ .|+.|++||+.+... .........+.+++|+|+
T Consensus 896 ~l~-s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 896 SFL-TAS--DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp EEE-EEE--TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred EEE-EEe--CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 554 544 799999999653210 001113457999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
++.+++ |+.+|.|.+|++.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|++..+.......+
T Consensus 973 g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 973 LEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp SSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred CCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 999999 88999999999999999999999999999999999999999999999999999988765443333
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.3e-32 Score=295.54 Aligned_cols=245 Identities=22% Similarity=0.321 Sum_probs=224.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|+|.+||+|+.+|.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++. .
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~ 89 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-K 89 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-E
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-E
Confidence 789999999999999999999999999999999999999999999999999998 4799999999999999999877 5
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++ .....+..|...|.+++|+|+...++++++ .|+.|++
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~v~v 167 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--LDRTVKV 167 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe--CCCeEEE
Confidence 7788899999999999999999999999999999999887 667788899999999999994344666665 7999999
Q ss_pred EECCCCceeeeecC--CCCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 363 WNTTTNTHLSCMDT--GSQVCNLVWSK--NVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 363 wd~~~~~~~~~~~~--~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
||+.++.....+.. ...+..++|+| ++..+++ ++.++.|++||+.+++.+..+.+|...|.+++|+|+|.+|++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99998887766653 37799999999 8999998 889999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPK 455 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~ 455 (474)
++.||.|++||+..+..
T Consensus 246 ~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp EETTSCEEEEETTTCSE
T ss_pred EeCCCeEEEEECCCCcE
Confidence 99999999999987654
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=261.92 Aligned_cols=280 Identities=14% Similarity=0.192 Sum_probs=224.2
Q ss_pred CcceeeeeCCCC----cEEEEE-cCCeEEEEeCCC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 167 DFYLNLVDWSSH----NVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 167 d~~v~~l~~s~~----~~la~~-~d~~V~lwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
.-.+++++|+++ ++|+++ .|+.|+|||+.+ +........+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 345999999995 555555 589999999997 55542332378999999999999999999999999999999998
Q ss_pred eEEEEecCCCCcEEEEEe--cC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 241 KRVRTMEGHRLRVGALAW--SS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~--~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+.+. +..|...|.+++| ++ .+|++++.||.|++||+++.. .+..+..|. .+.++.+.+ ..+++++.++.++
T Consensus 119 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~ 193 (368)
T 3mmy_A 119 QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE-RCYCADVIY--PMAVVATAERGLI 193 (368)
T ss_dssp EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSS-CEEEEEEET--TEEEEEEGGGCEE
T ss_pred Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCC-CceEEEecC--CeeEEEeCCCcEE
Confidence 8776 5569999999999 53 579999999999999999876 455565554 566666664 4889999999999
Q ss_pred EEECCCCcceEEEc--cCCCcEEEEEECCCCCc---EEEEecCCCCCeEEEEECCCC---ceeeeecCCC----------
Q 011971 317 VWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTN---THLSCMDTGS---------- 378 (474)
Q Consensus 317 iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~---ll~sg~Gt~d~~I~iwd~~~~---~~~~~~~~~~---------- 378 (474)
+||++......... .+...+.++++.++... .+++++ .|+.|++||+... ..+..+....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (368)
T 3mmy_A 194 VYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ 271 (368)
T ss_dssp EEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred EEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence 99998765443332 23445566666554432 255554 8999999999987 3344444322
Q ss_pred ---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 379 ---QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 379 ---~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+|...|.+++|+|+|++|++++.|+..+.|++.....
T Consensus 272 ~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp EECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred cccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence 6999999999999999 78999999999999999999999999999999999999999999999877777765443
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-32 Score=268.46 Aligned_cols=239 Identities=21% Similarity=0.382 Sum_probs=197.0
Q ss_pred CcceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCCC-
Q 011971 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC- 240 (474)
Q Consensus 167 d~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~~- 240 (474)
.-.|++++|++ ++ +++++.|+.|+|||+.+++...+..+ +|.+.|.+++|++ ++++|++|+.|++|+|||+.++
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 34599999998 44 55555689999999988754322222 8999999999986 4899999999999999999886
Q ss_pred -eEEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcce--EeeecCcCCCEEEEEEecC-----------
Q 011971 241 -KRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYD----------- 302 (474)
Q Consensus 241 -~~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spd----------- 302 (474)
+.+..+.+|...|.+++|++ .+|++|+.|+.|++||++..... ...+.+|...|.+++|+|+
T Consensus 93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 172 (316)
T 3bg1_A 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS 172 (316)
T ss_dssp CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CC
T ss_pred ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccc
Confidence 46777889999999999985 48999999999999999876422 4556789999999999997
Q ss_pred ------CCEEEEEeCCCcEEEEECCCC---cceEEEccCCCcEEEEEECCCC---CcEEEEecCCCCCeEEEEECCCCc-
Q 011971 303 ------NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTNT- 369 (474)
Q Consensus 303 ------~~~lasg~~Dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~~---~~ll~sg~Gt~d~~I~iwd~~~~~- 369 (474)
+++|++|+.|+.|++||++.. +.+..+.+|...|.+++|+|++ ..+|++++ .|++|++||+.+..
T Consensus 173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDASS 250 (316)
T ss_dssp SCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSSTTC
T ss_pred ccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCccc
Confidence 478999999999999999755 4566788999999999999986 35778876 89999999987631
Q ss_pred ---eeee-ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 370 ---HLSC-MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 370 ---~~~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
.... ..+...|.+++|+|+++.|++ ++.|+.|+||+..
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 251 NTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp CCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred cchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1112 235778999999999999999 7799999999975
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=256.81 Aligned_cols=246 Identities=22% Similarity=0.307 Sum_probs=214.1
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEE
Q 011971 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (474)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (474)
+....+ .+|.+.|++++| +++.+|++|+.||.|++||+.+++....+..|...|.+++|+ +.+|++|+.||.|.+|
T Consensus 9 ~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATL-KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEE-CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHh-hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 333444 389999999999 999999999999999999999999999999999999999998 4799999999999999
Q ss_pred ECcCCc--ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 276 DIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 276 d~~~~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
++.... .....+.+|...|.++.| ++++|++++.|+.|++|| .++.+..+..|...+.+++|.|....++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 997653 346778899999999999 577999999999999999 67788888899999999999984344666665
Q ss_pred CCCCCeEEEEECCCCceeeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC
Q 011971 354 GTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 354 Gt~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 431 (474)
.|+.|++||. ++....+. +...+.+++|++++. +++ ++.++.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 163 --~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 163 --ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp --TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred --CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence 7999999994 34444444 678899999999998 666 77999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 432 DGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 432 dg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
++ .|++++.||.|++||+..+....
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred CC-CEEEEecCCEEEEEECCCCceeE
Confidence 99 68999999999999998876443
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=291.58 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=198.9
Q ss_pred CCCCEEEEEEcCCC---------CEEEE-------------------EeCCCcEEEecCCCCeE----EEEecCCCCcEE
Q 011971 207 IDDSVCSVGWANRN---------THLAV-------------------GTSHGKVQIWDASRCKR----VRTMEGHRLRVG 254 (474)
Q Consensus 207 ~~~~V~~v~~sp~g---------~~la~-------------------gs~dg~I~iwd~~~~~~----~~~~~~h~~~V~ 254 (474)
+.+.|.+|+|+|++ ++||+ |+.||+|+|||+.+++. ...+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 35677777777765 56655 55788999999977653 244667889999
Q ss_pred EEEecC--------CEEEEEeCCCcEEEEECcCCcc----------eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 255 ALAWSS--------SLLSSGSRDKSILQRDIRAQED----------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 255 ~l~~~~--------~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+++|++ .+|++|+.||+|++||+..... ....+.+|...|++++|++++ .|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 999986 4899999999999999976531 123677899999999999864 899999999999
Q ss_pred EEECCCC-cceEEEccCCCcEEEE--EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C--CCeEEEEEcCCCC
Q 011971 317 VWNQHST-QPVLKYCEHTAAVKAI--AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-G--SQVCNLVWSKNVN 390 (474)
Q Consensus 317 iwd~~~~-~~~~~~~~h~~~V~~l--~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~--~~v~~l~~s~~~~ 390 (474)
+||++++ .+...+..|...|.+| +|+|++..+|++++ .|++|++||+++++++..+.. . ..|.+++|+|+++
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 9999976 4566788999999999 56777646888887 899999999998876655432 1 3478999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.+++ ++.|+.|++||+.++..+..+.+|.+.|.+|+|+|+|++|++|+.||+|++||+...
T Consensus 369 ~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 369 SYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred eEEE--eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 9888 778999999999999998899999999999999999999999999999999998654
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-31 Score=259.16 Aligned_cols=244 Identities=16% Similarity=0.257 Sum_probs=216.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+.+.. .
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~ 108 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-C 108 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-E
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-E
Confidence 899999999999999999999999999999999999999999999999999998 4799999999999999999877 4
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc-----------ceEEEccCCC--cEEEEEECCCC
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQ-----------PVLKYCEHTA--AVKAIAWSPHL 345 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~~~~~-----------~~~~~~~h~~--~V~~l~~sp~~ 345 (474)
+..+. |...|.+++|+|++++|++++.+ +.|++||+.... .+..+..|.. .+.+++|+|++
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence 55555 88899999999999999999999 999999987653 3445556666 99999999998
Q ss_pred CcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc
Q 011971 346 HGLLASGGGTADRCIRFWNTTT-NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR 423 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 423 (474)
..+ ++++ .|+.|++||+.+ +..+..+. +...|.+++|+|++++|++ ++.|+.|++||+.+++.+..+. +...
T Consensus 188 ~~l-~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 188 KYI-IAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT--SSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp CEE-EEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred CEE-EEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE--ecCCceEEEEECCCCceeeeec-CCCC
Confidence 855 4444 799999999998 67776666 5678999999999999998 7799999999999999998887 7788
Q ss_pred EEEEEECCCCCEEEEEeCCC--------------cEEEEeCCCCCCCC
Q 011971 424 VLYLAISPDGQTIVTGAGDE--------------TLRFWNVFPSPKSQ 457 (474)
Q Consensus 424 V~~l~~spdg~~l~t~s~Dg--------------~I~iW~l~~~~~~~ 457 (474)
+..++|+|++.++++++.++ .|++|++..+....
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 99999999999999999998 89999998776443
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-32 Score=269.26 Aligned_cols=246 Identities=16% Similarity=0.279 Sum_probs=212.6
Q ss_pred EEecCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEecCCCCeEEEEecC-----CCCcEEEEEecCC------EEEEE
Q 011971 202 LCDLGIDDSVCSVGWANR----NTHLAVGTSHGKVQIWDASRCKRVRTMEG-----HRLRVGALAWSSS------LLSSG 266 (474)
Q Consensus 202 ~~~~~~~~~V~~v~~sp~----g~~la~gs~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~~~~------~l~sg 266 (474)
.+..+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|.+++|+++ +|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 333489999999999984 45677777788999999998877666653 6688999999854 89999
Q ss_pred eCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEE---ccCCCcEEEEEEC
Q 011971 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAWS 342 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s 342 (474)
+.||.|++||+.+.+ .+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999999876 5777889999999999999 9999999999999999999999998888 6899999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeEEEEEcCCCCeEE
Q 011971 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----------------------------TGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 343 p~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~ 393 (474)
|++.. +++++ .|+.|++||+++++.+..+. +...|.++.|+ ++.++
T Consensus 171 ~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 171 LLGEK-IMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp TTSSE-EEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred CCCCE-EEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 99875 45554 79999999999876554433 67789999999 67787
Q ss_pred EEEecCCCeEEEEECCCCce--------------eEEEcCCCccEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCC
Q 011971 394 STHGYSQNQIIVWRYPTMSK--------------LATLTGHTFRVLYLAISPD--GQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~--------------~~~l~~h~~~V~~l~~spd--g~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+ ++.|+.|++||+.++.. +..+.+|...|.+++|+|+ |++|++|+.||.|++||+..+..
T Consensus 246 ~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 246 S--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp E--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred E--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 7 78999999999987644 7888899999999999999 99999999999999999988654
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.5e-32 Score=265.39 Aligned_cols=241 Identities=11% Similarity=0.125 Sum_probs=210.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe---EEEEecCCCCcEEEEEec--CC-EEEEEeCCCcEEEEEC-c
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---RVRTMEGHRLRVGALAWS--SS-LLSSGSRDKSILQRDI-R 278 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~-~ 278 (474)
+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|...|.+++|+ +. +|++|+.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 789999999999999999999999999999998776 345556899999999998 57 8999999999999999 7
Q ss_pred CCcceEeeecC--cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---------CcceEEEccCCCcEEEEEECCCCCc
Q 011971 279 AQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS---------TQPVLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 279 ~~~~~~~~~~~--h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
... ...+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 89 ~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 89 SPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred CCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 765 467778 999999999999 99999999999999999987 66666665 88999999999986
Q ss_pred EEEEecCCCCCeEEEEECCC-Ccee---eeecCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCC------ceeEE
Q 011971 348 LLASGGGTADRCIRFWNTTT-NTHL---SCMDTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTM------SKLAT 416 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~-~~~~---~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~------~~~~~ 416 (474)
+++++ .|+.|++||+++ +... ....+...+.+++|+| +++.+++ ++.+|.|++|++... +.+..
T Consensus 163 -l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 -LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp -EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred -EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCccccccccee
Confidence 55544 799999999998 5532 3334677899999999 9999998 779999999999877 78888
Q ss_pred EcCCCc---------cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 417 LTGHTF---------RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 417 l~~h~~---------~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
+..|.. .|.+++|+|++++|++++.||.|++||+..+....
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 888865 99999999999999999999999999998776443
No 94
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.3e-31 Score=255.91 Aligned_cols=260 Identities=20% Similarity=0.322 Sum_probs=213.9
Q ss_pred eEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCCC-----eEEEEecCCCCcEEEEEecC
Q 011971 188 CVYLWNACSSKVTKLCDL-GIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRC-----KRVRTMEGHRLRVGALAWSS 260 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~~-----~~~~~~~~h~~~V~~l~~~~ 260 (474)
.++++...+.+......+ +|.+.|++|+|+|+ +++||+|+.||+|+|||+.+. .....+.+|...|.+++|++
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 466666555554333222 89999999999997 689999999999999998754 45778899999999999984
Q ss_pred --CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce-EEEccCCCcEE
Q 011971 261 --SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV-LKYCEHTAAVK 337 (474)
Q Consensus 261 --~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~-~~~~~h~~~V~ 337 (474)
.+|++|+.|+.|++|+..... .......+...+..+.+++++.+|++|+.|+.+++||+...... ..+..|...+.
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred CCCEEEEEcccccceEEeecccc-eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 799999999999999998876 45666778888999999999999999999999999999866543 34457899999
Q ss_pred EEEECCCCCc-EEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE
Q 011971 338 AIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 338 ~l~~sp~~~~-ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 415 (474)
.++|++++.. ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+.+.+.
T Consensus 176 ~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp EEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEE
T ss_pred ceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEeccCceee
Confidence 9999988654 566665 89999999999999888776 5678999999999999999 8899999999999999998
Q ss_pred EEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 416 TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 416 ~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+..+ ..|..++|+|++. +++++.|+.|++||+..+.
T Consensus 252 ~~~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 252 TLDGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTE
T ss_pred eecCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCe
Confidence 88765 5799999999875 5566679999999998654
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=279.85 Aligned_cols=258 Identities=14% Similarity=0.204 Sum_probs=211.7
Q ss_pred EEeCCCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC---Ce---EEEEecCCCCcEEEEEecC--C
Q 011971 191 LWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR---CK---RVRTMEGHRLRVGALAWSS--S 261 (474)
Q Consensus 191 lwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~---~~---~~~~~~~h~~~V~~l~~~~--~ 261 (474)
.|+. +++.+..+..+|.+.|++++|+| ++++|++|+.||.|+|||+.+ +. ....+ +|...|.+++|++ +
T Consensus 47 ~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 4774 45666666447899999999999 999999999999999999876 33 22233 4999999999984 7
Q ss_pred EEEEEeCCCcEEEEECc---CCcceEeeec----------C--cCCCEEEEE--EecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 262 LLSSGSRDKSILQRDIR---AQEDFVSKLS----------G--HKSEVCGLK--WSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd~~---~~~~~~~~~~----------~--h~~~V~~l~--~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
+|++|+.||.|++||+. .+. ...... . +...+.++. +++++.+|++|+.|+.|++||+++++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCCEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 99999999999999995 322 222111 1 556677777 56789999999999999999999999
Q ss_pred ceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeEEEEEcC----CCCeEEEEE
Q 011971 325 PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSK----NVNELVSTH 396 (474)
Q Consensus 325 ~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~----~~~~l~~~~ 396 (474)
.+..+.. |...|.+++|+|++. ++++|+ .|+.|++||+++++++..+ .+...|.+++|+| ++.+|++
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s-- 278 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECC-VLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG-- 278 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE--
T ss_pred eeEEEccCCCCCceEEEEECCCCC-EEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE--
Confidence 9999987 899999999999977 555555 7999999999999998876 4566799997665 5667777
Q ss_pred ecCCCeEEEEECCCCceeEEEcC--------------------------CCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 397 GYSQNQIIVWRYPTMSKLATLTG--------------------------HTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~~~~~l~~--------------------------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|+.|+.|++||+.+++.+..+.+ |...|.+++|+ ++++|++|+.||.|++||+
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 88999999999999998887764 44568888999 7789999999999999999
Q ss_pred CCCCCCC
Q 011971 451 FPSPKSQ 457 (474)
Q Consensus 451 ~~~~~~~ 457 (474)
..+....
T Consensus 358 ~~~~~~~ 364 (437)
T 3gre_A 358 NELSSSK 364 (437)
T ss_dssp TCGGGCE
T ss_pred CCcccce
Confidence 8876544
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=298.37 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=168.5
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
..+++++|+| +.+||+| .|+.|+||+..+.+.... +.|...|.+++|+| |++|++++.|++|+|||+.+++.+..
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 3589999999 6666666 589999999987765443 36788999999999 88999999999999999999999888
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceE----------eeecCcCCCEEEEEEecC-CCEEEEEeCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV----------SKLSGHKSEVCGLKWSYD-NRELASGGND 312 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~----------~~~~~h~~~V~~l~~spd-~~~lasg~~D 312 (474)
+. |...|.+++|++ ++|++|+.||.|++||++...... ..+.+|...|.+++|+|+ +..|++|+.|
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 86 778999999984 799999999999999998765211 234679999999999996 5789999999
Q ss_pred CcEEEEECCCCcceEEEccC------------------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011971 313 NRLFVWNQHSTQPVLKYCEH------------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~h------------------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~ 372 (474)
|.| +||+++++.+..+..| ...|.+++|+|++. ++++++ .|+.|++||+++++++.
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs--~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIH--EDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEE--TTCCEEEEETTTCCEEE
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCcEEE
Confidence 999 9999999988888765 47799999999987 566665 89999999999988765
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-31 Score=284.37 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=211.7
Q ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCC-----CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEEC
Q 011971 206 GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASR-----CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~-----~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~ 277 (474)
+|.+.|++|+|++++ ++|++|+.||+|+|||+.+ +.....+.+|...|.+++|+ +.+|++|+.||.|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 899999999999865 7999999999999999875 34567889999999999998 479999999999999999
Q ss_pred cCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE---ccCCCcEEEEEECCCCC-cEEEEec
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAWSPHLH-GLLASGG 353 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~-~ll~sg~ 353 (474)
.++. ....+.+|...|.+++|+|++++|++|+.|++|++||.......... ..|...|.+++|+|++. .++++++
T Consensus 460 ~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 AAGV-STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp TTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred CCCc-ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 8876 57788999999999999999999999999999999998755433322 36888999999999873 4677776
Q ss_pred CCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCC
Q 011971 354 GTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 354 Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 432 (474)
.|+.|++||++++++...+. |...|.+++|+|+++.|++ |+.|+.|++||+.+++.+..+.. ...|.+++|+|+
T Consensus 539 --~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--g~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~ 613 (694)
T 3dm0_A 539 --WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS--GGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN 613 (694)
T ss_dssp --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred --CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence 89999999999999887776 6678999999999999999 88999999999999998887764 457999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCC
Q 011971 433 GQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+.+|++++ |+.|++||+..+..
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcEEEEEc-CCCEEEEECCCCCC
Confidence 98887765 56699999987653
No 98
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.6e-30 Score=263.41 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=235.5
Q ss_pred eeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~----~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
+.+++|++ +.+++++. ++.|++||..+++....... +|.+.|.+++|++++.++++++.|+.|++||+.+++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 55788988 45555554 56899999999998875432 67889999999999999999999999999999999999
Q ss_pred EEecCCCCcEEEEEecC--CEE-EEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe--------CC
Q 011971 244 RTMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--------ND 312 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~--------~D 312 (474)
..+..|...+.+++|++ ..+ ++++.|+.|.+||+++.. .+..+.. ...+.+++|+|+++.|++++ .|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 99999999999999984 455 566689999999998776 4555544 45599999999999999988 58
Q ss_pred CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeE
Q 011971 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l 392 (474)
+.|++||+.+++.+..+ .|...+.+++|+|+++.++++++ .|+.|++||+.+++.+..+.+...+.+++|+|+++.+
T Consensus 283 g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 89999999998877665 56678999999999988888876 7999999999999999999888999999999999998
Q ss_pred EEEEecC-------------CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeC-CCcEEEEeCCC
Q 011971 393 VSTHGYS-------------QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFP 452 (474)
Q Consensus 393 ~~~~g~~-------------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~-Dg~I~iW~l~~ 452 (474)
+++.... ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8853222 579999999999999888764 57899999999999998875 99999999863
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-32 Score=275.07 Aligned_cols=246 Identities=16% Similarity=0.231 Sum_probs=202.8
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeE--EEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcC
Q 011971 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR--VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~ 279 (474)
+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|...|.+|+|++ ++|++|+.||+|++||++.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 5788999999999 567999999999999999987654 444568999999999973 6999999999999999986
Q ss_pred Ccce-EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 280 QEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 280 ~~~~-~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
.... ......+...+++++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|+|++..++++|+ .|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s--~d~ 273 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS--VDQ 273 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE--TTS
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec--Ccc
Confidence 5411 112233445688999999999999999999999999864 566778899999999999999998999887 899
Q ss_pred eEEEEECCCCceeeee----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc------cEEEEE
Q 011971 359 CIRFWNTTTNTHLSCM----DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF------RVLYLA 428 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~ 428 (474)
.|++||+++.+....+ .+...|.+++|+|++++|++ ++.|+.|+|||+.++.....+..|.. .+..+.
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s--~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT--TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE--EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEE--EcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 9999999887654433 46778999999999999999 78999999999999998888876653 234567
Q ss_pred ECCCCCEEEEEe------------CCCcEEEEeCCCCCCC
Q 011971 429 ISPDGQTIVTGA------------GDETLRFWNVFPSPKS 456 (474)
Q Consensus 429 ~spdg~~l~t~s------------~Dg~I~iW~l~~~~~~ 456 (474)
|+|++.++++++ .++.|++||+..+...
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 777777776664 3467999999887643
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-30 Score=258.39 Aligned_cols=274 Identities=13% Similarity=0.108 Sum_probs=218.9
Q ss_pred cceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-.+++++|++ +.+|++|.++.++||+..+++....... ..+..+++.++++.+ ++|+.|+.|+|||+.+++.+..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 4489999999 7899999988999999988766554432 257888999988877 4577789999999999999998
Q ss_pred ecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEE--EeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS--GGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~las--g~~Dg~v~iwd~~~~ 323 (474)
+. |...|.+++|+++.++++. |+.|++||+.+....+..+.. ....+++++ .++++ |+.||.|++||+.++
T Consensus 97 ~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp EE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred EE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence 87 6679999999998877765 789999999887223444433 344455666 56666 588999999999976
Q ss_pred c---------------c-eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeec---CCCCeEEE
Q 011971 324 Q---------------P-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMD---TGSQVCNL 383 (474)
Q Consensus 324 ~---------------~-~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~-I~iwd~~~~~~~~~~~---~~~~v~~l 383 (474)
+ + +..+.+|...|.+++|+|++. ++++|+ .|++ |++||+.+++++..+. +...|.++
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECTTSS-EEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 5 2 778889999999999999987 666665 8998 9999999999999887 77889999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCce--eEEEc---------------------CCCccEEEEEECCCCCEEEEEe
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK--LATLT---------------------GHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~---------------------~h~~~V~~l~~spdg~~l~t~s 440 (474)
+|+|++++|++ ++.|+.|+|||+..... ...+. .+......++|++||++|++++
T Consensus 247 ~~s~~~~~l~s--~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~ 324 (355)
T 3vu4_A 247 KWSTDGSKLAV--VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324 (355)
T ss_dssp EECTTSCEEEE--EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred EECCCCCEEEE--EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence 99999999999 78999999999975431 11111 1122346689999999999999
Q ss_pred CCCcEEEEeCCCCCCC
Q 011971 441 GDETLRFWNVFPSPKS 456 (474)
Q Consensus 441 ~Dg~I~iW~l~~~~~~ 456 (474)
.||.+++|++..+...
T Consensus 325 ~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 325 HTRMIETFKVVFDDEM 340 (355)
T ss_dssp TTTEEEEEEEEEETTT
T ss_pred CCCeEEEEEEEcCCCC
Confidence 9999999999876543
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.7e-30 Score=256.38 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=223.8
Q ss_pred EEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec
Q 011971 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS 259 (474)
Q Consensus 181 la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~ 259 (474)
++++.++.|++||+.+++....+. +...+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+.+++|+
T Consensus 6 vs~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 6 IANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEcCCCCEEEEEECCCCeEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 334458999999999998887775 33569999999999977 566689999999999999998888665 89999998
Q ss_pred C--CEE-EEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCcceEEEccCCCc
Q 011971 260 S--SLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (474)
Q Consensus 260 ~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-asg~~Dg~v~iwd~~~~~~~~~~~~h~~~ 335 (474)
+ +.| ++++.++.|++||+.+.+ .+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ ..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~ 159 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RS 159 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SS
T ss_pred CCCCEEEEEECCCCEEEEEECCCCe-EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CC
Confidence 4 555 556678999999998876 3444444 4578999999999977 68888999999999999988888665 45
Q ss_pred EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCcee
Q 011971 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKL 414 (474)
Q Consensus 336 V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~ 414 (474)
+.+++|+|++..++++++ .++.|++||+.+++.+..+.+...+.+++|+|+++.++++... .++.|++||+.+++.+
T Consensus 160 ~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp EEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred cceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 799999999998877775 7899999999999999888888889999999999999984211 6899999999999999
Q ss_pred EEEcCCCccEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCC
Q 011971 415 ATLTGHTFRVLYLAISPDGQTI-VTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 415 ~~l~~h~~~V~~l~~spdg~~l-~t~s~Dg~I~iW~l~~~~~ 455 (474)
..+..|. .+.+++|+|+|++| ++++.|+.|++||+..+..
T Consensus 238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 8888765 47899999999987 6778899999999987654
No 102
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=290.02 Aligned_cols=244 Identities=18% Similarity=0.312 Sum_probs=211.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC--CCeEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECcC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~ 279 (474)
+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +++|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999999999999999999999999998 567788899999999999997 57999999999999999988
Q ss_pred Cc-ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC--cceEEEccCCCcEEEEEECCC----------
Q 011971 280 QE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPH---------- 344 (474)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~---------- 344 (474)
+. .....+.+|...|.+++|+|+ ++.|++|+.||.|++||++++ .....+..|...|.+++|+|.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 64 246677889999999999999 999999999999999999877 345567789999999999994
Q ss_pred ---CCcEEEEecCCCCCeEEEEECCCCc----eeeeec-CCCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCCc-
Q 011971 345 ---LHGLLASGGGTADRCIRFWNTTTNT----HLSCMD-TGSQVCNLVWSKN---VNELVSTHGYSQNQIIVWRYPTMS- 412 (474)
Q Consensus 345 ---~~~ll~sg~Gt~d~~I~iwd~~~~~----~~~~~~-~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~- 412 (474)
+. ++++|+ .||.|++||++++. ....+. +...|.+++|+|+ ++.+++ |+.||.|++||+.++.
T Consensus 167 ~~d~~-~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 167 TKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp CGGGC-CEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEESSSSS
T ss_pred CCCCC-EEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecCCCCCC
Confidence 55 555555 79999999998874 333333 5778999999999 888888 7899999999998864
Q ss_pred ----eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 413 ----KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 413 ----~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+.....|...|.+++|+|+|.+|++|+.||.|++|++....
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 333345688999999999999999999999999999998644
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-30 Score=255.05 Aligned_cols=239 Identities=21% Similarity=0.350 Sum_probs=200.1
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCC--CEEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEecCCCCe
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~--~~~~~~~~~~~~~V~~v~~sp~--g~~la~gs~dg~I~iwd~~~~~ 241 (474)
-.+.+++|++ +.+|+++ .|+.|+|||+..+ +....+. +|...|++++|+++ +++|++|+.||.|++||+.+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 4599999998 5555555 6899999999844 3333332 78999999999987 8999999999999999999987
Q ss_pred --EEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEec-------------
Q 011971 242 --RVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY------------- 301 (474)
Q Consensus 242 --~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp------------- 301 (474)
.+..+..|...|.+++|++ .+|++++.|+.|++||++... .....+..|...|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence 7788889999999999984 589999999999999998874 23456778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc----ceEEEccCCCcEEEEEECCCC--CcEEEEecCCCCCeEEEEECCCCce---ee
Q 011971 302 DNRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNTH---LS 372 (474)
Q Consensus 302 d~~~lasg~~Dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~--~~ll~sg~Gt~d~~I~iwd~~~~~~---~~ 372 (474)
++.+|++|+.|+.|++||++++. ....+..|...|.+++|+|++ ..++++++ .|+.|++||+.++.. ..
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 248 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKT 248 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEE
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccceee
Confidence 69999999999999999998765 345677899999999999994 44666665 899999999998741 12
Q ss_pred e---ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011971 373 C---MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (474)
Q Consensus 373 ~---~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 411 (474)
. ..+...|.+++|+|++++|++ ++.||.|++|++...
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEET
T ss_pred eeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCC
Confidence 2 225678999999999999999 778999999998743
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=5.2e-30 Score=260.75 Aligned_cols=233 Identities=24% Similarity=0.436 Sum_probs=209.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEe
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVS 285 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (474)
+|...|.++.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||+.++. .+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-~~~ 207 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-MLN 207 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC-EEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc-EEE
Confidence 56678998887 789999999999999999999999999999999999999999999999999999999999877 678
Q ss_pred eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce---EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV---LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 286 ~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
.+.+|...|.+++|+ +..|++|+.||.|++||+.+++.. ..+.+|...|.+++| ++. ++++|+ .|+.|++
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~--~dg~i~v 280 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSAS--GDRTIKV 280 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEE--TTSEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEe--CCCeEEE
Confidence 888999999999996 459999999999999999988765 667789999999999 444 566665 7999999
Q ss_pred EECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 363 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
||+.+++.+..+. +...|.++.|+ ++.+++ |+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence 9999999988887 56779999984 678888 889999999999999999999999999999999 7889999999
Q ss_pred CCcEEEEeCCCCC
Q 011971 442 DETLRFWNVFPSP 454 (474)
Q Consensus 442 Dg~I~iW~l~~~~ 454 (474)
||.|++||+..+.
T Consensus 355 dg~i~vwd~~~~~ 367 (435)
T 1p22_A 355 DGKIKVWDLVAAL 367 (435)
T ss_dssp TSCEEEEEHHHHT
T ss_pred CCcEEEEECCCCC
Confidence 9999999997554
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=8.8e-30 Score=247.94 Aligned_cols=245 Identities=16% Similarity=0.276 Sum_probs=202.4
Q ss_pred cceeeeeCCC-CcEE-EEEcCCeEEEEeCCCCC----EEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCC
Q 011971 168 FYLNLVDWSS-HNVL-AVGLGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 168 ~~v~~l~~s~-~~~l-a~~~d~~V~lwd~~~~~----~~~~~~~~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~ 239 (474)
-.+++++|++ +++| +++.|+.|++||+.++. ....+. +|...|++++|+| ++++|++|+.||.|++||+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 3599999998 4544 45568999999998763 333332 7899999999999 699999999999999999987
Q ss_pred C---------eEEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcceEe------------eecCcCCCE
Q 011971 240 C---------KRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVS------------KLSGHKSEV 294 (474)
Q Consensus 240 ~---------~~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~h~~~V 294 (474)
+ +.+..+.+|...|.+++|++ .+|++++.||.|++||+++...... ....|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 7 67888999999999999984 5899999999999999987652110 112688899
Q ss_pred EEEEEecC---CCEEEEEeCCCcEEEEECCCCcc--eEEEccCCCcEEEEEECCCCC---cEEEEecCCCCCeEEEEECC
Q 011971 295 CGLKWSYD---NRELASGGNDNRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLH---GLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 295 ~~l~~spd---~~~lasg~~Dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~---~ll~sg~Gt~d~~I~iwd~~ 366 (474)
.+++|+|+ +..|++++.|+.+.+|+...++. +..+..|...|.+++|+|++. .++++++ .|+.|++||+.
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~ 248 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKIT 248 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCC
Confidence 99999997 99999999999998888887765 667778999999999999983 5777776 89999999998
Q ss_pred CC----------------------------------------------ceeeeec-CCCCeEEEEEcCCCCeEEEEEecC
Q 011971 367 TN----------------------------------------------THLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 367 ~~----------------------------------------------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
.+ +.+..+. +...|.+++|+|++++|++ ++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~~~ 326 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS--AGD 326 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--EET
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--ecC
Confidence 75 3334443 5678999999999999999 789
Q ss_pred CCeEEEEECCCCceeEEE
Q 011971 400 QNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 400 dg~I~iwd~~~~~~~~~l 417 (474)
||.|+||++.+++.+..+
T Consensus 327 dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 327 DGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp TSCEEEEEECTTSCEEEE
T ss_pred CCcEEEEecCcCcchhhe
Confidence 999999999987655443
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-30 Score=257.40 Aligned_cols=256 Identities=11% Similarity=0.029 Sum_probs=205.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC---------CCeEEEEec-
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS---------RCKRVRTME- 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~---------~~~~~~~~~- 247 (474)
..+++++.|+.|++||+.+++....+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 345666779999999999998877765 456788889888 9999999999999665 455455544
Q ss_pred CCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcceEeee-cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 248 GHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 248 ~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
+|...|.+++|++ ++|++|+.||.|++||+++... .... ..|...|.+++|+|++.+|++|+.||.|++||+++
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 6888999999975 6899999999999999998874 3333 45666899999999999999999999999999999
Q ss_pred Ccce-EEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC----CCCe--EEEEEcCCCCeEEE
Q 011971 323 TQPV-LKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQV--CNLVWSKNVNELVS 394 (474)
Q Consensus 323 ~~~~-~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~----~~~v--~~l~~s~~~~~l~~ 394 (474)
++.+ ..+.. |...|.+++|+|++. ++++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++|++
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence 9887 78888 999999999999987 455553 45999999999877655442 1223 46999999999999
Q ss_pred EEecC-CCeEEEEECCCCceeEEEcCCCccEEEEEECC---CCCEEEEEeCCCcEEEEeC
Q 011971 395 THGYS-QNQIIVWRYPTMSKLATLTGHTFRVLYLAISP---DGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 395 ~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~t~s~Dg~I~iW~l 450 (474)
++. ++.|+||++......... ..+..++|++ ++..|++++.||.++++-.
T Consensus 278 --~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 278 --YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred --ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 555 999999999766554433 5677888988 8889999999999988754
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=247.84 Aligned_cols=256 Identities=17% Similarity=0.212 Sum_probs=209.5
Q ss_pred EEeCCCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEecCCC-CeEE-EEecCCCCcEEEEEecC--CEE
Q 011971 191 LWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDASR-CKRV-RTMEGHRLRVGALAWSS--SLL 263 (474)
Q Consensus 191 lwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~gs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~~~--~~l 263 (474)
.|+....+....+. +|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|++ ++|
T Consensus 23 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CCSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cCCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 34445555555543 79999999999999 69999999999999999987 5544 77889999999999984 699
Q ss_pred EEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEE--ecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEE
Q 011971 264 SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (474)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (474)
++++.||.|++||+.+.. ...+..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+. .+.++.+
T Consensus 102 ~s~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~ 178 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV 178 (368)
T ss_dssp EEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE
T ss_pred EEEcCCCcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe
Confidence 999999999999999876 3346779999999999 8999999999999999999999999998887665 6677777
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeEEEEEcCCCCe----EEEEEecCCCeEEEEECCCC---
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNE----LVSTHGYSQNQIIVWRYPTM--- 411 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~----l~~~~g~~dg~I~iwd~~~~--- 411 (474)
.+. .+++.+ .++.+.+|++.......... ....+.++.+.++... +++ ++.++.|++|++...
T Consensus 179 ~~~--~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 179 IYP--MAVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp ETT--EEEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHH
T ss_pred cCC--eeEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCcc
Confidence 654 344443 69999999998765443322 3455666666665554 666 889999999999987
Q ss_pred ceeEEEcCCCc------------cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 412 SKLATLTGHTF------------RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 412 ~~~~~l~~h~~------------~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
..+..+.+|.. .|.+++|+|++++|++|+.||.|++||+..+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 66778888876 79999999999999999999999999999765443
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=7.9e-30 Score=256.25 Aligned_cols=269 Identities=10% Similarity=0.099 Sum_probs=195.5
Q ss_pred CcEEEEEcCCeEEEEeCCCC--------CEEEEEecCCCCCEEEEEEc--------------------CCCCEEEEEeCC
Q 011971 178 HNVLAVGLGNCVYLWNACSS--------KVTKLCDLGIDDSVCSVGWA--------------------NRNTHLAVGTSH 229 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~--------~~~~~~~~~~~~~V~~v~~s--------------------p~g~~la~gs~d 229 (474)
.+++++|.++.|.+|+.... ....+....+...+..+.|+ +++.+|++|+.|
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d 110 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD 110 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence 57999999999999975321 11112222344555555554 345689999999
Q ss_pred CcEEEecCCCCeEEE-----EecCCCCcEEEEEecC----------CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE
Q 011971 230 GKVQIWDASRCKRVR-----TMEGHRLRVGALAWSS----------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (474)
Q Consensus 230 g~I~iwd~~~~~~~~-----~~~~h~~~V~~l~~~~----------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (474)
++|+|||+.+++... .+.+|...|.+++|++ ++|++|+.|++|++||+++.. .+..+..|...|
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~~~~v 189 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPLSSPG 189 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEECSSCE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCCCCCc
Confidence 999999998876543 3579999999999963 689999999999999998776 456667888999
Q ss_pred EEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEE-------------------------EccCCCcEEEEEEC-CCCCc
Q 011971 295 CGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLK-------------------------YCEHTAAVKAIAWS-PHLHG 347 (474)
Q Consensus 295 ~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~-------------------------~~~h~~~V~~l~~s-p~~~~ 347 (474)
.+++|+|++ .+|++|+.|++|++||+++++.... ..+|...|.+++|+ |++.
T Consensus 190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~- 268 (393)
T 4gq1_A 190 ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS- 268 (393)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-
T ss_pred EEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-
Confidence 999999987 4799999999999999987654322 13577788999987 6766
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecC-------------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDT-------------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-------------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
.+++++ .|+.+++||+..++....+.. ........|++....+++++|+.|+.|++||+
T Consensus 269 ~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 269 GILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp EEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred EEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 555554 899999999987765443321 11222334444333333333889999999999
Q ss_pred CCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+++.+..+.+|...|.+++|+|||++||+++.|| +.+|++.
T Consensus 347 ~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 347 YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999998889999999999999999999998776 5566553
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.9e-29 Score=249.93 Aligned_cols=250 Identities=11% Similarity=0.098 Sum_probs=186.0
Q ss_pred EEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEE-EEEeCC
Q 011971 191 LWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLL-SSGSRD 269 (474)
Q Consensus 191 lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l-~sgs~d 269 (474)
||+..+.+...... .|...|.+++|+|+|++|++|+.+| ++|||+++++.......+...+..+.++++.+ ++|+.|
T Consensus 3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccc-cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 45555555544333 6889999999999999999998775 78999998877766554433344444445665 678888
Q ss_pred CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcE
Q 011971 270 KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGL 348 (474)
Q Consensus 270 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l 348 (474)
+.|++||+.+++ .+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ . +
T Consensus 81 ~~v~iWd~~~~~-~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~-~ 149 (355)
T 3vu4_A 81 EVVHIWDDVKKQ-DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G-L 149 (355)
T ss_dssp TEEEEEETTTTE-EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T-E
T ss_pred cEEEEEECCCCc-EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--c-E
Confidence 999999998876 455554 67799999998764 4444 3789999999988 66655544 455666777 3 4
Q ss_pred EEEecCCCCCeEEEEECCCCc----------------eeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCe-EEEEECCC
Q 011971 349 LASGGGTADRCIRFWNTTTNT----------------HLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQ-IIVWRYPT 410 (474)
Q Consensus 349 l~sg~Gt~d~~I~iwd~~~~~----------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~ 410 (474)
++.++|..||.|++||+.++. ++..+ .|...|.+++|+|++++|++ |+.|+. |+|||+.+
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSEEEEEETTT
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCEEEEEECCC
Confidence 555423489999999999865 13333 46788999999999999999 889998 99999999
Q ss_pred CceeEEEc-C-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 411 MSKLATLT-G-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 411 ~~~~~~l~-~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
++.+..+. + |...|.+++|+|||++|++++.|++|++||+.....
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 99999998 5 999999999999999999999999999999987643
No 110
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.4e-29 Score=250.47 Aligned_cols=245 Identities=22% Similarity=0.390 Sum_probs=204.6
Q ss_pred CCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC-CCeE
Q 011971 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKR 242 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~-~~~~ 242 (474)
....+.+++|++ +.+|+++ .++.|++||+.+++....+. +|...|.+++| ++++|++|+.||.|++||+. ....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 455699999998 5555555 68999999999999888775 78999999999 46799999999999999998 5677
Q ss_pred EEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEEe--CCCcEEE
Q 011971 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGG--NDNRLFV 317 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg~--~Dg~v~i 317 (474)
+..+.+|...|.+++|+ +.+|++|+.||.|++||+++.. ....+..|...|.+++|+|++. ++++|+ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 88899999999999998 4799999999999999999866 5777888999999999999764 566655 7999999
Q ss_pred EECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeEEEEEcCCCCeEEE
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM---DTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~ 394 (474)
||+.+++.+..+ .+...|.+++|+|++..+++++ |..|+.|++||+.++...... .+...|.+++|+|+++.|++
T Consensus 289 ~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTH-GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEE-CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred EECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEe-ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 999999988888 4678899999999998666654 347999999999987665543 36778999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeEEEc
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
++.||.|++|++.+++.+....
T Consensus 367 --~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 367 --AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp --ECTTSEEEEEECCC--------
T ss_pred --EeCCCcEEEEECCCCccccccc
Confidence 7899999999999988776543
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.8e-29 Score=253.74 Aligned_cols=241 Identities=21% Similarity=0.342 Sum_probs=202.1
Q ss_pred CEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCe----EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCc
Q 011971 210 SVCSVGWANRNTHL-AVGTSHGKVQIWDASRCK----RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE 281 (474)
Q Consensus 210 ~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~ 281 (474)
....++++|+...+ ++|+.+|.|+||++.... .+..+.+|...|.+++|++ ++|++|+.||.|++||+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34457888876544 457889999999996643 3445778999999999974 699999999999999998863
Q ss_pred ------ceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEE--ccCCCcEEEEEECCCCCcEEEEe
Q 011971 282 ------DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKY--CEHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 282 ------~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~--~~h~~~V~~l~~sp~~~~ll~sg 352 (474)
..+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+ ..|...|.+++|+|++..+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3567788999999999999998 69999999999999999999999999 78999999999999988555543
Q ss_pred cCCCCCeEEEEECCCCceeeee-c-CCC-CeEEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCce-eEEEc-CCCccE
Q 011971 353 GGTADRCIRFWNTTTNTHLSCM-D-TGS-QVCNLVWSKNVNELVSTHG---YSQNQIIVWRYPTMSK-LATLT-GHTFRV 424 (474)
Q Consensus 353 ~Gt~d~~I~iwd~~~~~~~~~~-~-~~~-~v~~l~~s~~~~~l~~~~g---~~dg~I~iwd~~~~~~-~~~l~-~h~~~V 424 (474)
.|+.|++||+++++.+..+ . +.. .+..+.|+++++.|++ | ..++.|++||+.+++. +.... .|...|
T Consensus 196 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 196 ---RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT--GFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp ---TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE--EECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred ---cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE--eccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 7999999999999988887 3 333 3899999999998888 6 6899999999988664 33333 577889
Q ss_pred EEEEECCCCCEEEE-EeCCCcEEEEeCCCCCC
Q 011971 425 LYLAISPDGQTIVT-GAGDETLRFWNVFPSPK 455 (474)
Q Consensus 425 ~~l~~spdg~~l~t-~s~Dg~I~iW~l~~~~~ 455 (474)
.+++|+|++++|++ |+.||.|++|++..+..
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 99999999999975 55799999999987763
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-30 Score=262.62 Aligned_cols=253 Identities=10% Similarity=0.067 Sum_probs=203.7
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-.+.+++|+| +.++|.+ .|++|+ |...++.+ + +|...|.+++|+|+| .++.+.+|+.+ ....
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~~~ 79 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-CNSKNLFHVKEFPLE-------FENKLDFELAQ---QNGL 79 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-SBGGGTEEEEEECCC-------CCCTTTTSCCC---SSCS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-CCCccEEEEEECCCC-------CcceEEEEeCC---CceE
Confidence 3589999999 6666665 477888 76655433 3 899999999999999 45555555533 2223
Q ss_pred ec-CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCC-----CEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 246 ME-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-----EVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 246 ~~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
+. .|...|.+++|+| ..|++++.||.|++||... .+..+. |.. .|.+++|||||++||+|+.||+|+|
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 33 5688999999994 7899999999999999543 455566 665 5999999999999999999999999
Q ss_pred EECCCCcc-------eEEE----ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee---eeec--CCCCeE
Q 011971 318 WNQHSTQP-------VLKY----CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL---SCMD--TGSQVC 381 (474)
Q Consensus 318 wd~~~~~~-------~~~~----~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~---~~~~--~~~~v~ 381 (474)
||+.++.. +.++ .+|...|.+++|+|+| +++++ .|+.|++||+.++... ..+. +...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99998753 5666 5678899999999998 55544 6999999999887743 3452 457899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEE--CCCCCEEEEEeCCCcEEEEeCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAI--SPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+++|+ ++.|++ ++ ++.|++||+.+++......+|...|..++| +||+..|+++++||+ ++|.+.
T Consensus 231 svaFs--g~~LAS--a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVL--TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEE--EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEE--Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 678887 43 699999999988775444489999999999 999999999999999 999986
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-30 Score=250.72 Aligned_cols=232 Identities=9% Similarity=0.039 Sum_probs=188.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcC---------CcceEe
Q 011971 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA---------QEDFVS 285 (474)
Q Consensus 215 ~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~---------~~~~~~ 285 (474)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++++.|++|++|+... ......
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 344578899999999999999999998888776 456778888888 99999999999997763 221222
Q ss_pred eecCcCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 286 KLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 286 ~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
...+|...|.+++|+| ++++|++|+.||+|++||+++++.+..+. .|...|.+++|+|++. ++++|+ .|+.|++
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~--~dg~i~i 196 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYS--PDGILDV 196 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEEC--TTSCEEE
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEc--CCCEEEE
Confidence 3346778999999999 99999999999999999999998876664 4566899999999987 677765 8999999
Q ss_pred EECCCCcee-eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC---CCccEE--EEEECCCCC
Q 011971 363 WNTTTNTHL-SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG---HTFRVL--YLAISPDGQ 434 (474)
Q Consensus 363 wd~~~~~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V~--~l~~spdg~ 434 (474)
||+++++.+ ..+. +...|.+++|+|++.+|++ ++ ++.|++||+++.+.+..+.. |...+. +++|+|+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999999877 5554 4788999999999999999 55 45999999998877655443 444444 599999999
Q ss_pred EEEEEeC-CCcEEEEeCCCCCC
Q 011971 435 TIVTGAG-DETLRFWNVFPSPK 455 (474)
Q Consensus 435 ~l~t~s~-Dg~I~iW~l~~~~~ 455 (474)
+|++++. |+.|++|++....+
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEecCCCCcEEEEEEccccc
Confidence 9999998 99999999976654
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.2e-28 Score=235.92 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=194.6
Q ss_pred CcceeeeeCCC-C---cEEEEEcCCeEEEEeCCCC---CEEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCc---EEEe
Q 011971 167 DFYLNLVDWSS-H---NVLAVGLGNCVYLWNACSS---KVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGK---VQIW 235 (474)
Q Consensus 167 d~~v~~l~~s~-~---~~la~~~d~~V~lwd~~~~---~~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~---I~iw 235 (474)
-..+.++-|-. + -.+.++....|.+|+..++ +...... .|..+|..|.+.||.. ++.++-.+=. |+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sl 117 (356)
T 2w18_A 39 SVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRAL 117 (356)
T ss_dssp EEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEE
T ss_pred EEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeeccccccceEEE
Confidence 34577888875 2 2677788999999999988 5555554 5677788888877543 3333322111 1111
Q ss_pred cCCCC----eEEEEecCCCCcEEEEEecCCEEEEEe---CCCcEEEEECcCCcceEeeecCcCCCEEEEEEec---CCCE
Q 011971 236 DASRC----KRVRTMEGHRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY---DNRE 305 (474)
Q Consensus 236 d~~~~----~~~~~~~~h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~ 305 (474)
-+... .......+|...|..+ ....++..+ .|+.|++|++....+.+..+.+|...+..++|++ ++..
T Consensus 118 a~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 118 FCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp CC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred EECCCccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCce
Confidence 11111 1111123444445443 344444443 4999999999665556778889999999999999 7899
Q ss_pred EEEEeCCCcEEEEECCCCcceEEEccCC---CcEEEEEECCCCCcEE-----------EEecCCCCCeEEEEECCCCcee
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKYCEHT---AAVKAIAWSPHLHGLL-----------ASGGGTADRCIRFWNTTTNTHL 371 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~~~h~---~~V~~l~~sp~~~~ll-----------~sg~Gt~d~~I~iwd~~~~~~~ 371 (474)
|++|+.|++|+|||+.+++.+.++.+|. ..+.+++|+|++..++ ++| +.|++|++||..+++.+
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG--s~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR--SPVFQLIVINPKTTLSV 273 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEETTTTEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--CCCcEEEEEECCCCEEE
Confidence 9999999999999999999999998654 4677889999987553 344 48999999999999887
Q ss_pred eeec------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEE-EEEECCCCCEEEEEeCCCc
Q 011971 372 SCMD------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL-YLAISPDGQTIVTGAGDET 444 (474)
Q Consensus 372 ~~~~------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~t~s~Dg~ 444 (474)
..+. +...+.+..++ +..+++ |+.|+.|+|||+.+++.+.++.+|...+. .++|+|||++|++|+.|++
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s--g~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK--DHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE--TTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEeeccCCCcceeEccccC--CCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 6542 11223333333 566666 88999999999999999999999987665 5899999999999999999
Q ss_pred EEEEeC
Q 011971 445 LRFWNV 450 (474)
Q Consensus 445 I~iW~l 450 (474)
|++||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999996
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.7e-29 Score=252.91 Aligned_cols=238 Identities=20% Similarity=0.370 Sum_probs=200.2
Q ss_pred cceeeeeCCCC--cEEEEE-cCCeEEEEeCCC----------CCEEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 011971 168 FYLNLVDWSSH--NVLAVG-LGNCVYLWNACS----------SKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQ 233 (474)
Q Consensus 168 ~~v~~l~~s~~--~~la~~-~d~~V~lwd~~~----------~~~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~I~ 233 (474)
..+++++|++. ++|+++ .++.|++|++.+ .+....+. +|...|++++|+|++. +|++|+.||.|+
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 45899999984 466666 478999999976 34444443 7899999999999998 999999999999
Q ss_pred EecCCCCeE-------EEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEec
Q 011971 234 IWDASRCKR-------VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSY 301 (474)
Q Consensus 234 iwd~~~~~~-------~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~sp 301 (474)
+||+..+.. ...+.+|...|.+++|++ .+|++++.||.|++||++... ..+..+..|...|++++|+|
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS
T ss_pred EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC
Confidence 999987321 456778999999999974 689999999999999999763 35667779999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCC-CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-----------
Q 011971 302 DNR-ELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----------- 368 (474)
Q Consensus 302 d~~-~lasg~~Dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~----------- 368 (474)
++. +|++|+.||.|++||+++ ..++..+..|...|.+++|+|++..++++++ .|+.|++||+...
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccccc
Confidence 887 689999999999999998 5678889899999999999999988888887 7999999999872
Q ss_pred ---ceeeeec-CCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCC
Q 011971 369 ---THLSCMD-TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 369 ---~~~~~~~-~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~ 410 (474)
+.+..+. +...|.+++|+|++. .+++ ++.||.|+||++..
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 3444443 456799999999999 5555 67999999999864
No 116
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.6e-28 Score=245.30 Aligned_cols=256 Identities=23% Similarity=0.365 Sum_probs=206.0
Q ss_pred CcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-CeEE
Q 011971 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRV 243 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-~~~~ 243 (474)
..+|++|+|++ +++|++| .|+.|+|||+.+++....+. +|...|.+++|+ +.+|++|+.|+.+++||... ...+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee
Confidence 45699999998 5665555 68999999999999887775 799999998885 67999999999999999876 4567
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc---eEeeecCcCCCEEEEEEecCCC-EEEE--EeCCCcE
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNR-ELAS--GGNDNRL 315 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~-~las--g~~Dg~v 315 (474)
..+.+|...+..+.|+ +.++++++.|+.|++||...... .+.....|...|.+++|+|++. .+++ |+.|++|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 7889999999999998 48999999999999999987652 3456778999999999999654 5554 4579999
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
++||+.+++....+.. ...+.++.|+|++..+++++ |..|+.|++||+.+++++..+. |...|.+++|+|+|++|++
T Consensus 304 ~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 304 RIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEeCCccccceeecc-ccceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999999998888855 45789999999998776654 4579999999999999999887 6778999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEE
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
|+.|+.|+|||+....+......+...+....+
T Consensus 382 --~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 382 --AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp --EETTTEEEEECCSCSSCC---------------
T ss_pred --EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 789999999999887776666555544443333
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.8e-28 Score=242.67 Aligned_cols=276 Identities=19% Similarity=0.313 Sum_probs=197.0
Q ss_pred CCcceeeeeCCC-C--cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEecCCC
Q 011971 166 DDFYLNLVDWSS-H--NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 166 ~d~~v~~l~~s~-~--~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~gs~dg~I~iwd~~~ 239 (474)
....+.+++|++ + .+++++.++.|++||+.+++....+. +...+.++.|++. +.++++|+.+|.|++||+.+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 345699999997 3 46666679999999999998887774 6788999999985 45999999999999999999
Q ss_pred CeEEEEecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeee---------------cCcCCCEEEEEEec
Q 011971 240 CKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKL---------------SGHKSEVCGLKWSY 301 (474)
Q Consensus 240 ~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~---------------~~h~~~V~~l~~sp 301 (474)
++.+..+.+|...|.+++|++ . +|++|+.||.|++||++........+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999985 3 69999999999999998766444443 57889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcceEEEccC-----CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-
Q 011971 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD- 375 (474)
Q Consensus 302 d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~- 375 (474)
++++|++++.||.|++||+.+++....+..+ ...+........+..+++++ .|+.|++||+.+++.+..+.
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP---YGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE---ETTEEEEEETTTCCEEEEECC
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe---cCCEEEEEECcCCcceeeecc
Confidence 9999999999999999999988765544322 12222222233334455554 58999999999999998887
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeCC
Q 011971 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 376 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l~ 451 (474)
+...|.+++|+|+++.|++ ++.||.|++||+.+++.+.....+... ..+.+ +...+.+++.|+.+++|+..
T Consensus 333 ~~~~v~~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYS--GSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CSSCEEEEEEETTTTEEEE--EETTSCEEEEEECC------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEE--ECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 6678999999999999998 889999999999998887665543322 23333 33455677789999999865
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=251.34 Aligned_cols=234 Identities=11% Similarity=0.082 Sum_probs=198.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe---EEEEecC-------------------------------------
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---RVRTMEG------------------------------------- 248 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~---~~~~~~~------------------------------------- 248 (474)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966665 57899999999888 6555543
Q ss_pred -----------------CCCcEEEEEecC--CEE-EEEeCCCcEEEEECc--CCcceEeeec--CcCCCEEEEEEecCCC
Q 011971 249 -----------------HRLRVGALAWSS--SLL-SSGSRDKSILQRDIR--AQEDFVSKLS--GHKSEVCGLKWSYDNR 304 (474)
Q Consensus 249 -----------------h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~--~~~~~~~~~~--~h~~~V~~l~~spd~~ 304 (474)
|...|.+++|++ .+| ++|+.||.|++||+. .+. .+..+. .|...|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCCC
Confidence 333799999985 564 899999999999998 554 455554 5778999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcceE----EEccCCCcEEEEEECCC---CCcEEEEecCCCCCeEEEEECCCCceeeee--c
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVL----KYCEHTAAVKAIAWSPH---LHGLLASGGGTADRCIRFWNTTTNTHLSCM--D 375 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~--~ 375 (474)
+|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +. ++++|+ .|+.|++||+.+++.+..+ .
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~--~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSD--RDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEE--TTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEc--CCCcEEEEECCCCceeeeeecC
Confidence 99999999999999998876543 67789999999999999 65 566665 7999999999999887764 3
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC-------------------------CccEEEEEEC
Q 011971 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH-------------------------TFRVLYLAIS 430 (474)
Q Consensus 376 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~l~~s 430 (474)
+...|.+++|+ ++++|++ ++.|+.|++||+.+++.+..+..+ ...|..++|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLS--AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CSSCEEEEEEC-STTEEEE--EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCCceEEEEEC-CCCEEEE--EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 67889999999 9999998 779999999999999988888632 3568999999
Q ss_pred CCCCEEEEEe-CCCcEEEEeC
Q 011971 431 PDGQTIVTGA-GDETLRFWNV 450 (474)
Q Consensus 431 pdg~~l~t~s-~Dg~I~iW~l 450 (474)
|++++|++++ .|+.|++|++
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe
Confidence 9999999999 8999999999
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-28 Score=265.92 Aligned_cols=239 Identities=21% Similarity=0.350 Sum_probs=200.6
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCC--CCEEEEEeCCCcEEEecCCCCe-
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCK- 241 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~--g~~la~gs~dg~I~iwd~~~~~- 241 (474)
-.+++++|++ ++ +++++.||.|+|||+.++.......+ +|.+.|++++|+++ +++|++|+.||.|++||+.+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 4599999998 44 55556799999999985433333222 79999999999988 9999999999999999999887
Q ss_pred -EEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEec-------------C
Q 011971 242 -RVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY-------------D 302 (474)
Q Consensus 242 -~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp-------------d 302 (474)
.+..+.+|...|.+++|++ +.|++|+.||.|++||++... .....+.+|...|.+++|+| +
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 7778889999999999984 589999999999999998873 23456678999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEECCCC----cceEEEccCCCcEEEEEECCCC--CcEEEEecCCCCCeEEEEECCCCc------e
Q 011971 303 NRELASGGNDNRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNT------H 370 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~--~~ll~sg~Gt~d~~I~iwd~~~~~------~ 370 (474)
+.+|++|+.||.|++||++++ .....+..|...|.+++|+|++ ..++++++ .||.|++||+.++. .
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~ 247 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTL 247 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCBCCB
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcceeEE
Confidence 899999999999999999877 4556778899999999999994 34666665 79999999998874 2
Q ss_pred eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 371 LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 371 ~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
.....+...|.+++|+|+++.+++ |+.||.|++|++..
T Consensus 248 ~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCS
T ss_pred eccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCC
Confidence 222235678999999999999999 78999999999874
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.8e-27 Score=240.81 Aligned_cols=266 Identities=9% Similarity=0.033 Sum_probs=219.0
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE-----ecCCCCcEEEEEec--C
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT-----MEGHRLRVGALAWS--S 260 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~-----~~~h~~~V~~l~~~--~ 260 (474)
.|++||..++....+..+.....+.+++|+|++.++++++.++.|++||+.+++.+.. +.+|...|.+++|+ +
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence 5666666656443333333445677999999777888888889999999999988873 45789999999996 5
Q ss_pred CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCcceEEEccCCCcEEEE
Q 011971 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339 (474)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-sg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l 339 (474)
.++++++.|+.|++||+++.. .+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+.. ...+.++
T Consensus 182 ~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~ 259 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL 259 (433)
T ss_dssp EEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred EEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence 789999999999999998776 5667778999999999999999885 455899999999999988877755 4569999
Q ss_pred EECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCcee
Q 011971 340 AWSPHLHGLLASGGGT-----ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 414 (474)
Q Consensus 340 ~~sp~~~~ll~sg~Gt-----~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 414 (474)
+|+|++..+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++ +..++.|++||+.+++.+
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEECCCCcEE
Confidence 9999998777665321 3789999999999988888777789999999999887665 678999999999999888
Q ss_pred EEEcCCCccEEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCCCCCC
Q 011971 415 ATLTGHTFRVLYLAISPDGQTIVTGAG---------------DETLRFWNVFPSPKSQ 457 (474)
Q Consensus 415 ~~l~~h~~~V~~l~~spdg~~l~t~s~---------------Dg~I~iW~l~~~~~~~ 457 (474)
..+. +...+.+++|+|+|++|++++. ||.|++||+..+....
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 8776 6778999999999999988876 5799999998765433
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.2e-28 Score=245.11 Aligned_cols=236 Identities=13% Similarity=0.052 Sum_probs=187.1
Q ss_pred ceeeeeCCCCcEEEEE-----------cCCeEEEEeCCCCCE-EEE---Eec----CCCCCEEEEEEcCCCCEEEEEe--
Q 011971 169 YLNLVDWSSHNVLAVG-----------LGNCVYLWNACSSKV-TKL---CDL----GIDDSVCSVGWANRNTHLAVGT-- 227 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~-----------~d~~V~lwd~~~~~~-~~~---~~~----~~~~~V~~v~~sp~g~~la~gs-- 227 (474)
.+.+++++...+++++ .++.+++|++.+... ... ... .+...+.+++|+|||++|++++
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 4667777766555543 356799998765432 111 111 3456799999999999987655
Q ss_pred CCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce-EeeecCcCCCEEEEEEecCCC
Q 011971 228 SHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 228 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spd~~ 304 (474)
.|++|+|||+.+++.+..+. |...|.+++|++ .+|++++.+ .+.+|+..++... ......|...|.+++|+|+++
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred CCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 68999999999999998886 778899999985 688888755 5666666655533 344567889999999999999
Q ss_pred EEEEEeCCC----cEEEEECCCCcc----eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-
Q 011971 305 ELASGGNDN----RLFVWNQHSTQP----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD- 375 (474)
Q Consensus 305 ~lasg~~Dg----~v~iwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~- 375 (474)
++++++.|+ .+++||+..... ...+..|...|.+++|+|++. +|++|+ .|+.|+|||+.+++++..+.
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs--~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLAS--NDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEc--CCCEEEEEECCCCcEEEEecC
Confidence 999999887 688899876643 345678999999999999987 667765 89999999999999988763
Q ss_pred -CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011971 376 -TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (474)
Q Consensus 376 -~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 411 (474)
|...|++++|+|+|++|++ |+.|++|+||+++..
T Consensus 310 gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCTT
T ss_pred cccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 6788999999999999999 889999999999743
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=251.43 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=200.6
Q ss_pred CCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 166 DDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 166 ~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+.-.+.+++++|.. .+..|++.+++....+.+.|...|.+++|+|+|.+||+++.||.|+|||.+. ++..
T Consensus 51 h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 51 NSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp BGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred CCccEEEEEECCCC--------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 34468888888854 4445555544444455556788999999999999999999999999999654 7777
Q ss_pred ecCCCC-----cEEEEEecC--CEEEEEeCCCcEEEEECcCCcc------eEeee----cCcCCCEEEEEEecCCCEEEE
Q 011971 246 MEGHRL-----RVGALAWSS--SLLSSGSRDKSILQRDIRAQED------FVSKL----SGHKSEVCGLKWSYDNRELAS 308 (474)
Q Consensus 246 ~~~h~~-----~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~------~~~~~----~~h~~~V~~l~~spd~~~las 308 (474)
+. |.. .|.+++|++ ++|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+||| +++
T Consensus 121 l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 77 665 599999984 8999999999999999988642 24555 6788899999999999 889
Q ss_pred EeCCCcEEEEECCCCcc---eEEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeecCCCCeEEE
Q 011971 309 GGNDNRLFVWNQHSTQP---VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMDTGSQVCNL 383 (474)
Q Consensus 309 g~~Dg~v~iwd~~~~~~---~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-~~~~~~~~~v~~l 383 (474)
++.|+.|++||+..+.. ..++ ..|...|.+++|+ + ..+++++ ++.|++||+.+++. .....+...+..+
T Consensus 198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHII 271 (588)
T ss_dssp EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence 99999999999988773 3566 4788999999999 4 4667664 69999999999888 4454788889999
Q ss_pred EE--cCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 384 VW--SKNVNELVSTHGYSQNQIIVWRYPTM-----------------------SKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 384 ~~--s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
.| +|++..+++ ++.+|. ++|..... ..+..+. +...|.+++|||||+.+|+
T Consensus 272 a~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 272 PLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred EeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence 99 999999988 888999 99987421 1111222 2446999999999999998
Q ss_pred EeC
Q 011971 439 GAG 441 (474)
Q Consensus 439 ~s~ 441 (474)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2e-26 Score=230.04 Aligned_cols=280 Identities=13% Similarity=0.062 Sum_probs=223.6
Q ss_pred ceeeeeCCC-CcEE-EEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~l-a~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~~~~~ 244 (474)
.+.+++|++ +..+ +++ .++.|++||+.+++....+.. ...+.+++|+|++++|++++ .++.|++||+.+++.+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 378999998 4444 444 689999999999998887753 34999999999999886554 57999999999999988
Q ss_pred EecCCCCcEEEEEecC--CEE-EEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE-EEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-asg~~Dg~v~iwd~ 320 (474)
.+..| ..+.+++|++ +.| ++++.++.|++||+.+.+ .+..+..| ..+.+++|+|++++| ++++.|+.|++||+
T Consensus 111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 88755 4689999984 455 788889999999998876 45555544 567999999999887 67788999999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
++++.+..+. +...+.+++|+|++..+++++.+..++.|++||+.+++.+..+..+..+.+++|+|+++.++++ +..+
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSFX 265 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETTT
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cCCC
Confidence 9998877764 5668999999999987777653224899999999999999988888889999999999988664 6789
Q ss_pred CeEEEEECCCCceeEEEcCCCccEE---EEEECCCC----------------------CEEEEEeCCCcEEEEeCCCCCC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVL---YLAISPDG----------------------QTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg----------------------~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|..+++|++..+..
T Consensus 266 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 266 NTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9999999999999988877655421 12222211 2355566788999999977653
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.4e-25 Score=216.70 Aligned_cols=239 Identities=23% Similarity=0.390 Sum_probs=200.1
Q ss_pred CcceeeeeCCC-CcEE-EEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-eEE
Q 011971 167 DFYLNLVDWSS-HNVL-AVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRV 243 (474)
Q Consensus 167 d~~v~~l~~s~-~~~l-a~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~-~~~ 243 (474)
...+++++|++ +++| +++.|+.|++||..+++...... +|...+.++.+ ++..|++|+.++.+.+|+.... ..+
T Consensus 67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeE
Confidence 34699999998 4554 55568999999999999888775 78888877665 4679999999999999998765 566
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEE---EEEeCCCcE
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNREL---ASGGNDNRL 315 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~l---asg~~Dg~v 315 (474)
..+.+|...+..+.|. +.+|++++.||.|++||+++.+. .......|...|.++.+++++..+ ++++.++.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 7788999999999997 58999999999999999987652 244556788899999999976543 466788999
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
++||.......... .+...+..+.|+|++..+++++ |..|+.|++||+.+++++..+. |...|.+++|+|++++|++
T Consensus 224 ~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 224 RIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp EEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEecccccccccc-cceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999988766554 6778899999999998766654 4589999999999999999887 6788999999999999999
Q ss_pred EEecCCCeEEEEECCCCc
Q 011971 395 THGYSQNQIIVWRYPTMS 412 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~ 412 (474)
|+.|+.|+|||+.+..
T Consensus 302 --~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 --AAADETLRLWRCFELD 317 (318)
T ss_dssp --EETTTEEEEECCSCCC
T ss_pred --EecCCeEEEEECCCCC
Confidence 8899999999987653
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=5.4e-27 Score=237.39 Aligned_cols=289 Identities=14% Similarity=0.104 Sum_probs=220.9
Q ss_pred ceeeeeCCC--CcEEEEE-----cCC----eEEEEeC--CCCCEEEEEec-CCCCCEEEEEEcC--------------CC
Q 011971 169 YLNLVDWSS--HNVLAVG-----LGN----CVYLWNA--CSSKVTKLCDL-GIDDSVCSVGWAN--------------RN 220 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~-----~d~----~V~lwd~--~~~~~~~~~~~-~~~~~V~~v~~sp--------------~g 220 (474)
.++..+|.+ ..+++.| .+| .|+|||+ .+++.+....+ +|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 367788876 3455443 256 8999999 88886533222 6777777777764 25
Q ss_pred CEEEEEeCC------CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCC---cEEEEECcCCcceEeeecC
Q 011971 221 THLAVGTSH------GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDK---SILQRDIRAQEDFVSKLSG 289 (474)
Q Consensus 221 ~~la~gs~d------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~ 289 (474)
..++.++.+ +.|++||+. +...+.+.+|...|.+++|++ +.|++++.++ .|++||+.+++ ...+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEEeec
Confidence 566666654 799999997 455677788999999999985 6899998875 99999999876 345677
Q ss_pred cCCCEEEEEEecCCCEEE-EEeCCCc--EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC--eEEEEE
Q 011971 290 HKSEVCGLKWSYDNRELA-SGGNDNR--LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWN 364 (474)
Q Consensus 290 h~~~V~~l~~spd~~~la-sg~~Dg~--v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd 364 (474)
|...+.+++|+|||+.|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|+++.|++++. .++ .|.+||
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEEEEE
Confidence 888999999999999888 6666654 99999988765 567788899999999999997777653 344 688889
Q ss_pred CCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 365 TTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
+.+++......+...+..++|+|+|++|+++... .+..|.+||+.+++. ..+..|. .+.+++|+|||++|++++.|+
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 9988765544456778899999999999985321 135899999998876 4566564 899999999999999988877
Q ss_pred ---cEEEEeCCCCCCCCCCCCCccc
Q 011971 444 ---TLRFWNVFPSPKSQNTDSEIGA 465 (474)
Q Consensus 444 ---~I~iW~l~~~~~~~~~~~~~~~ 465 (474)
.|++|++..+.......+...+
T Consensus 376 ~~~~l~~~d~~g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 376 MGSVLNLVSTDGRFKARLPATDGQV 400 (415)
T ss_dssp TEEEEEEEETTSCCEEECCCSSSEE
T ss_pred CccEEEEEECCCCcEEEeeCCCCCC
Confidence 7999999866544444444433
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.7e-27 Score=236.74 Aligned_cols=232 Identities=15% Similarity=0.153 Sum_probs=167.7
Q ss_pred eeCCC-CcEEE-EEcCCeEEEEeCCCCCEEEEEe----cCCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEecCC
Q 011971 173 VDWSS-HNVLA-VGLGNCVYLWNACSSKVTKLCD----LGIDDSVCSVGWAN--------RNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 173 l~~s~-~~~la-~~~d~~V~lwd~~~~~~~~~~~----~~~~~~V~~v~~sp--------~g~~la~gs~dg~I~iwd~~ 238 (474)
..+++ ..+|+ ++.|++|+|||..+++...... .+|.+.|.+|+|+| +|++||+|+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 33344 34444 4568999999999887654322 27999999999998 78999999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceE------------------------eeecCcC
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFV------------------------SKLSGHK 291 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~------------------------~~~~~h~ 291 (474)
++..+..+.+|...|.+++|++ .+|++|+.|++|++||++++.... ....+|.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 9988888889999999999985 479999999999999998764211 1124678
Q ss_pred CCEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEE------------------ECCC-CCcEEEE
Q 011971 292 SEVCGLKWS-YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA------------------WSPH-LHGLLAS 351 (474)
Q Consensus 292 ~~V~~l~~s-pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~------------------~sp~-~~~ll~s 351 (474)
..|.++.|+ ++++.|++++.|+++++||+..++....+..|...+..+. |+|. +..++++
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 889999987 7999999999999999999988776666655554444433 3332 3345566
Q ss_pred ecCCCCCeEEEEECCCCceeee-ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 352 GGGTADRCIRFWNTTTNTHLSC-MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
|+ .|+.|++||+.+++.+.. ..+...|.+++|+|+|++|++ ++ ++.+.+|.+.
T Consensus 335 gs--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~--as-~~Gv~lvrL~ 388 (393)
T 4gq1_A 335 HS--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI--AT-EGSVLLTRLM 388 (393)
T ss_dssp ET--TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE--EE-SSEEEEEEEG
T ss_pred EC--CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE--Ee-CCCeEEEEEe
Confidence 54 899999999999887655 447788999999999999998 54 4556666653
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.6e-24 Score=209.59 Aligned_cols=271 Identities=9% Similarity=0.090 Sum_probs=206.4
Q ss_pred CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeE-EEEecCCCCcEE
Q 011971 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKR-VRTMEGHRLRVG 254 (474)
Q Consensus 178 ~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~-~~~~~~h~~~V~ 254 (474)
+.++++. .++.|++||..+++....+..+ ...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+.....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA 87 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence 3434444 5789999999999998887643 4556 9999999997777666 88999999999887 777777776666
Q ss_pred EEEecC--CEEEEEeCCC---cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEE-EeCCCc-EEEEECCCCcceE
Q 011971 255 ALAWSS--SLLSSGSRDK---SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDNR-LFVWNQHSTQPVL 327 (474)
Q Consensus 255 ~l~~~~--~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~las-g~~Dg~-v~iwd~~~~~~~~ 327 (474)
+++|++ ++|+++..++ .|.+||+.+.+ .+..+. +...+.+++|+|+|++|++ +..++. |.+|++.....+.
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 689984 6777555553 89999998776 344443 3455799999999985554 456688 9999987644331
Q ss_pred ----EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 328 ----KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 328 ----~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
........+..++|+|+++.+++++. .++.|.+||+.+++. +..+..+..+..++|+|+|++++++ ...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~ 242 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TEST 242 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCC
Confidence 22244556899999999998888775 689999999999998 8888888889999999999988775 4467
Q ss_pred CeEEEEECCCCce--eEEEcCC----Ccc---EEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 011971 401 NQIIVWRYPTMSK--LATLTGH----TFR---VLYLAISPDGQTIVTGAG-DETLRFWNVFPSPK 455 (474)
Q Consensus 401 g~I~iwd~~~~~~--~~~l~~h----~~~---V~~l~~spdg~~l~t~s~-Dg~I~iW~l~~~~~ 455 (474)
+.|.+||+.+++. +..+..+ ... +..++|+|||++|++++. ++.|.+|++.....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 8899999998876 4444322 222 345899999998866554 56999999987553
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.2e-24 Score=223.40 Aligned_cols=274 Identities=12% Similarity=0.128 Sum_probs=218.6
Q ss_pred CCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC--CCCeEEEEecCCC
Q 011971 175 WSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA--SRCKRVRTMEGHR 250 (474)
Q Consensus 175 ~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~--~~~~~~~~~~~h~ 250 (474)
+++ +.+++++ .++.|.+||..++++...+..++. +.+++|+|+|++|++++.++.|.+||+ .+++.+..+. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 455 3444444 478999999999999988875554 899999999999999999999999999 8899888887 45
Q ss_pred CcEEEEEecC------CEEEEEe-CCCcEEEEECcCCcceEeeecC----------cC-CCEEEEEEecCCCE-EEEEeC
Q 011971 251 LRVGALAWSS------SLLSSGS-RDKSILQRDIRAQEDFVSKLSG----------HK-SEVCGLKWSYDNRE-LASGGN 311 (474)
Q Consensus 251 ~~V~~l~~~~------~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~-~~V~~l~~spd~~~-lasg~~ 311 (474)
..+..++|++ ++|++++ .+++|.+||..+.+ ++..+.. |. ..+.++.+++++.. +++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 5678999975 5777777 58999999998876 4444433 22 37899999997654 566778
Q ss_pred CCcEEEEECCCCcceE--EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-----CCeEEEE
Q 011971 312 DNRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-----SQVCNLV 384 (474)
Q Consensus 312 Dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~ 384 (474)
++.|.+||+.+.+.+. .+ .+...+..++|+|+++++++++. .+++|.+||+.+++++..+..+ .....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 8999999998876544 44 45667889999999998888775 6899999999999998887642 223333
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCC-------CceeEEEcCCCccEEEEEECCCCCEEEEEe-------CCCcEEEEeC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPT-------MSKLATLTGHTFRVLYLAISPDGQTIVTGA-------GDETLRFWNV 450 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~t~s-------~Dg~I~iW~l 450 (474)
++|++..++++....++.|.+||+.+ ++.+.++.+|...+..++++|||++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 57775555554334689999999998 899999999998899999999999999987 2789999999
Q ss_pred CCCCCC
Q 011971 451 FPSPKS 456 (474)
Q Consensus 451 ~~~~~~ 456 (474)
.+....
T Consensus 457 ~~~~~~ 462 (543)
T 1nir_A 457 KNLDAK 462 (543)
T ss_dssp TCTTSC
T ss_pred CCCCCC
Confidence 987754
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.8e-24 Score=208.64 Aligned_cols=267 Identities=12% Similarity=0.143 Sum_probs=195.5
Q ss_pred EEEE-EcCCeEEEEeCC-CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEecCC--CCe--EEEEecCCCCc
Q 011971 180 VLAV-GLGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-GKVQIWDAS--RCK--RVRTMEGHRLR 252 (474)
Q Consensus 180 ~la~-~~d~~V~lwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g~I~iwd~~--~~~--~~~~~~~h~~~ 252 (474)
++++ +.++.|++|++. +++........+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 3444 358999999985 4544434334567789999999999999988886 899999997 444 444555444 7
Q ss_pred EEEEEecC--CEEEEEe-CCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCC-Ccc
Q 011971 253 VGALAWSS--SLLSSGS-RDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHS-TQP 325 (474)
Q Consensus 253 V~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~-~~~ 325 (474)
+..++|++ +.|++++ .++.|.+||+..+. .....+.. ...+.+++|+|++++|++++ .++.|++||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 88999984 5565555 58899999995221 12333333 34588999999999888887 899999999987 543
Q ss_pred eE----EEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeec---C----CCCeEEEEEcCCC
Q 011971 326 VL----KYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTH--LSCMD---T----GSQVCNLVWSKNV 389 (474)
Q Consensus 326 ~~----~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~--~~~--~~~~~---~----~~~v~~l~~s~~~ 389 (474)
.. .+.. ....+..++|+|++..+++++. .++.|.+||+.. ++. ...+. . ...+..++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 22 2222 3457889999999998888765 689999999953 432 22222 1 2356789999999
Q ss_pred CeEEEEEecCCCeEEEEECC----CCceeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEEEEeCCC
Q 011971 390 NELVSTHGYSQNQIIVWRYP----TMSKLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLRFWNVFP 452 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~ 452 (474)
++|+++ +..++.|.+|++. ..+.+..+..+.. +..++|+|+|++|++++ .|+.|.+|+++.
T Consensus 243 ~~l~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 243 RHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CEEEEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 998864 5578999999998 3455555655554 88999999999888887 689999997764
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.1e-23 Score=212.98 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=197.1
Q ss_pred CcEEEEEcC------CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEecCCCCeEEEEecC
Q 011971 178 HNVLAVGLG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 178 ~~~la~~~d------~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg---~I~iwd~~~~~~~~~~~~ 248 (474)
..++.++.+ +.|++||+.++....+. +|...|.+++|+|+|++|++++.++ .|++||+.+++.. .+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 456666654 69999999876654444 5788999999999999999999875 9999999988775 4667
Q ss_pred CCCcEEEEEecC--CEEE-EEeCCCc--EEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC-C--cEEEEEC
Q 011971 249 HRLRVGALAWSS--SLLS-SGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQ 320 (474)
Q Consensus 249 h~~~V~~l~~~~--~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-g--~v~iwd~ 320 (474)
|...+.+++|++ +.|+ +++.++. |++||+.++. ...+..|...+.+++|+|||++|++++.+ + .|++||+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 888999999985 5566 6776665 9999998765 46677888999999999999999988864 4 6888899
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
.+++. ..+..+...+.+++|+|+|+.|++++....+..|.+||+.+++... +.....+..++|+|+|+.|+++ ..+
T Consensus 299 ~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~--s~~ 374 (415)
T 2hqs_A 299 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYS--SSQ 374 (415)
T ss_dssp TSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEE--EEE
T ss_pred CCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEE--EcC
Confidence 88764 4556677889999999999977776541113689999999988754 3333489999999999999884 344
Q ss_pred C---eEEEEECCCCceeEEEcCCCccEEEEEECCCCC
Q 011971 401 N---QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ 434 (474)
Q Consensus 401 g---~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 434 (474)
+ .|++||+. +..+..+.+|.+.|.+++|+|.-.
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 4 89999986 566778899999999999999643
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=9.6e-24 Score=220.65 Aligned_cols=283 Identities=12% Similarity=0.100 Sum_probs=224.2
Q ss_pred eeeeeCCC-Cc-EEEEEcCCeEEEEeC--CCCCEEEEEecCCCCCEEEEEEcC----CCCEEEEEeC-CCcEEEecCCCC
Q 011971 170 LNLVDWSS-HN-VLAVGLGNCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWAN----RNTHLAVGTS-HGKVQIWDASRC 240 (474)
Q Consensus 170 v~~l~~s~-~~-~la~~~d~~V~lwd~--~~~~~~~~~~~~~~~~V~~v~~sp----~g~~la~gs~-dg~I~iwd~~~~ 240 (474)
+..+.+++ ++ +++++.++.|++||+ .+++.+..+. +...+.+++|+| +|++|++++. +++|.|||..++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 67888998 44 555566899999999 7888777665 456789999999 9999999885 899999999999
Q ss_pred eEEEEecC----------CC-CcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 241 KRVRTMEG----------HR-LRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 241 ~~~~~~~~----------h~-~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
+.+..+.. |. ..+..+.+++ .++++...++.|.+||+.+..........+...+.++.|+|+|++|
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 99888764 22 3789999984 4678888999999999987653332223456678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCcceEEEcc----CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cceeeee
Q 011971 307 ASGG-NDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NTHLSCM 374 (474)
Q Consensus 307 asg~-~Dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-------~~~~~~~ 374 (474)
++++ .+++|.+||+.+++.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ ++++..+
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 6655 589999999999998888764 55433333 5787666787763 1479999999998 8888888
Q ss_pred cCC-CCeEEEEEcCCCCeEEEEEec-------CCCeEEEEECCCCcee-EEE--------cCCCccEEEEEECCCCCEEE
Q 011971 375 DTG-SQVCNLVWSKNVNELVSTHGY-------SQNQIIVWRYPTMSKL-ATL--------TGHTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 375 ~~~-~~v~~l~~s~~~~~l~~~~g~-------~dg~I~iwd~~~~~~~-~~l--------~~h~~~V~~l~~spdg~~l~ 437 (474)
... ..+..+.++|++++|++ +. .++.|.|||+.+++.. ..+ ..+..++.+++|+|||+.|+
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 854 56788999999999999 43 2679999999999877 443 35678899999999999988
Q ss_pred EEe-----CCCcEEEEeCCCCCCCCC
Q 011971 438 TGA-----GDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 438 t~s-----~Dg~I~iW~l~~~~~~~~ 458 (474)
++. .|+.|.+||..+....+.
T Consensus 495 ~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCeEEEEECCCceEEEe
Confidence 663 479999999998865543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=2.9e-23 Score=203.55 Aligned_cols=266 Identities=15% Similarity=0.122 Sum_probs=214.4
Q ss_pred eeeeeCCC-CcEEEEEc--------CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCC
Q 011971 170 LNLVDWSS-HNVLAVGL--------GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASR 239 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~--------d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~ 239 (474)
+..++|++ ++.+.++. ++.|++||..+++....+.. ...+.+++|+++|++++++ ..++.|.+||..+
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 56788888 45555554 56899999999998888764 3457889999999966655 4478999999999
Q ss_pred CeEEEEecCCCC---------cEEEEEecC--CEEEEEe--CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 240 CKRVRTMEGHRL---------RVGALAWSS--SLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 240 ~~~~~~~~~h~~---------~V~~l~~~~--~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
++.+..+..+.. .+.+++|++ +.+++++ .++.|.+||+.+.+ .+..+..+...+.+++|+|++++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTTEE
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCCEE
Confidence 998888875442 278899974 5666655 57889999998776 455555466668899999999999
Q ss_pred EEEeCCCcEEEEECCCCcceEEEcc----CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~ 382 (474)
++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+..+.. ..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~~ 276 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPES-LA 276 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSSC-CC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCCC-ce
Confidence 9999999999999999988877754 5567889999999998887764 579999999999999888876554 56
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 383 LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
++|+|+++.++++ ...++.|.+||..+++.+..+..+. .+..++|+|||++|+++..++
T Consensus 277 ~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVT-HRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence 9999999987775 5578999999999999888887544 679999999999877766553
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.7e-24 Score=205.77 Aligned_cols=253 Identities=10% Similarity=0.054 Sum_probs=193.8
Q ss_pred cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-CeEEEEecCC-CCcEEEEEecC--
Q 011971 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRTMEGH-RLRVGALAWSS-- 260 (474)
Q Consensus 185 ~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-~~~~~~~~~h-~~~V~~l~~~~-- 260 (474)
.++.|++||+.+++...+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......| ...+.+++|++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4679999999999887665 4678999999999999999987 78999999998 8777666665 47888999984
Q ss_pred CEEEEEe--CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEE-EEeCCCcEEEEECCC-CcceEEEccCCCcE
Q 011971 261 SLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGNDNRLFVWNQHS-TQPVLKYCEHTAAV 336 (474)
Q Consensus 261 ~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-sg~~Dg~v~iwd~~~-~~~~~~~~~h~~~V 336 (474)
..|++++ .++.+.+|.+.........+..+. .+..++|+|++++|+ +++.++.+.||++.. ......+..+...+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 6888888 335555555543222234444443 489999999999887 778899999998642 33455666788899
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeec-CCCCeEEEEEcCCCCeEEEEEec---------CCCeEEE
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY---------SQNQIIV 405 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~---------~dg~I~i 405 (474)
.+++|+|++..+++++. .++.+++|++. .+..+..+. +...+..+.|+|++++|++.... .++.|.+
T Consensus 176 ~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 99999999997777764 58888999875 344444443 45568899999999999885432 2267999
Q ss_pred EECCCCce--eEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 406 WRYPTMSK--LATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 406 wd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
||+.+++. +..+.+|...+..++|+|||++|++++.|.
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99988765 445557888999999999999998887664
No 134
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2.4e-24 Score=207.87 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=141.7
Q ss_pred CCCCEEEEEe--CCCcEEEecC-CCCeEEEEecCCCCcEEEEEecC-----CEEEEEeCCCcEEEEECcCCcceEeeecC
Q 011971 218 NRNTHLAVGT--SHGKVQIWDA-SRCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQEDFVSKLSG 289 (474)
Q Consensus 218 p~g~~la~gs--~dg~I~iwd~-~~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 289 (474)
++|+++.++. .|+.|++|++ .+++.+..+.+|...+..++|++ ..|++|+.|++|++||+.+++ .+..+.+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g 221 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHI 221 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEEEC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEEcC
Confidence 3444444433 4889999999 55888888888888887777764 799999999999999999987 5777765
Q ss_pred cC---CCEEEEEEecCCCEE------------EEEeCCCcEEEEECCCCcceEEE-----ccCCCcEEEEEECCCCCcEE
Q 011971 290 HK---SEVCGLKWSYDNREL------------ASGGNDNRLFVWNQHSTQPVLKY-----CEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 290 h~---~~V~~l~~spd~~~l------------asg~~Dg~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~ll 349 (474)
|. ..+++++|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ + .++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-TEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--C-CEE
Confidence 43 468888999999876 56888999999999999877655 3565555444444 3 367
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecC-CCCe-EEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 350 ASGGGTADRCIRFWNTTTNTHLSCMDT-GSQV-CNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v-~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
++|+ .|++|+|||+.+++++.++.. ...+ ..++|+|+|++|++ |+.|++|+|||+
T Consensus 299 ASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp EEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred EEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 7776 899999999999999999873 3444 46899999999999 889999999996
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=5.1e-24 Score=230.08 Aligned_cols=280 Identities=14% Similarity=0.145 Sum_probs=207.0
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEec
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---SVCSVGWANRNTHLAVGTSH---------GKVQIWD 236 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~---~V~~v~~sp~g~~la~gs~d---------g~I~iwd 236 (474)
...+.|++ +.+++.+.++.|++||+.+++...++. .+.. .|.+++|+|||++|++++.+ +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 56789998 667777778999999999998877764 3433 49999999999999999864 7888999
Q ss_pred CCCCeEEEEec---CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCC------------------
Q 011971 237 ASRCKRVRTME---GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE------------------ 293 (474)
Q Consensus 237 ~~~~~~~~~~~---~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~------------------ 293 (474)
+.+++. ..+. +|...+..++|++ +.|+.++. +.|++||+.++.. ......+...
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccC
Confidence 998875 3333 4555688999984 67888776 7999999988663 3333333332
Q ss_pred EEEEEEecCCCEEEEEeCCC----------------------------------cEEEEECCCCcceEEEccC------C
Q 011971 294 VCGLKWSYDNRELASGGNDN----------------------------------RLFVWNQHSTQPVLKYCEH------T 333 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg----------------------------------~v~iwd~~~~~~~~~~~~h------~ 333 (474)
+.++.|+|||++|++++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 37899999999999987553 7999999988866666554 6
Q ss_pred CcEEEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeec--CCCCe----EEEEEcCCCCeEEEEEecCCC-----
Q 011971 334 AAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNTHLSCMD--TGSQV----CNLVWSKNVNELVSTHGYSQN----- 401 (474)
Q Consensus 334 ~~V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~s~~~~~l~~~~g~~dg----- 401 (474)
..+..++|+|||+.+++... +..+..|++||+.++++...+. +...+ ..+.|+|+|+.|+.+.+..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 78999999999985544432 1234689999999998766543 22333 378999999998876445666
Q ss_pred -eEEEEEC-CCCc--eeEEEcCCCccEEE-EEECCCCCEEEEEeCC---CcEEEEeCCCC
Q 011971 402 -QIIVWRY-PTMS--KLATLTGHTFRVLY-LAISPDGQTIVTGAGD---ETLRFWNVFPS 453 (474)
Q Consensus 402 -~I~iwd~-~~~~--~~~~l~~h~~~V~~-l~~spdg~~l~t~s~D---g~I~iW~l~~~ 453 (474)
.|.+||+ ..+. ....+..+...+.. ++|+|||+.|+..+.+ +.+++|++...
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5777773 4443 14455544444554 6999999999866655 78999999754
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=5.2e-23 Score=200.01 Aligned_cols=266 Identities=10% Similarity=0.019 Sum_probs=206.0
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEEecCCCC-CEEEEEEcCCCCEEEE-EeCCCcEEEecCCCCeEEEEecC-C----CCc
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTMEG-H----RLR 252 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~-gs~dg~I~iwd~~~~~~~~~~~~-h----~~~ 252 (474)
+++.+.++.|++||..+++....+..++.. .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+.. + ...
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 456667899999999999988887654433 4889999999987654 45578999999999988877653 2 225
Q ss_pred EEEEEec--CCEEEEEe------------CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 253 VGALAWS--SSLLSSGS------------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 253 V~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
+..++|+ ++.|++++ .++.|.+||+.+.+ .+..+.. ...+.+++|+|++++|+++ ++.|++|
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 6778897 45777775 67999999998765 3444433 4567889999999988888 6899999
Q ss_pred ECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC-----------------------eEEEEECCCCceeeeec
Q 011971 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----------------------CIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~-----------------------~I~iwd~~~~~~~~~~~ 375 (474)
|+.+++.+..+..+.. ...+.|+|++..+++++. .++ .|.+||+.+++.. .+.
T Consensus 160 d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~ 235 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE 235 (337)
T ss_dssp ETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred ECCCCcEeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence 9999988777755431 113378999987766543 233 4789999998875 322
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 376 ---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 376 ---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
....+..++|+|+++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.|+.|++||+.+
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cCCCCCceeeEEECCCCCEEEE--e--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 3456889999999999998 3 699999999999888877644 4578999999999999999999999999988
Q ss_pred CCCCCC
Q 011971 453 SPKSQN 458 (474)
Q Consensus 453 ~~~~~~ 458 (474)
+.....
T Consensus 311 ~~~~~~ 316 (337)
T 1pby_B 311 LEKKGQ 316 (337)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 765443
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.3e-23 Score=224.41 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=211.1
Q ss_pred ceeeeeCCC-CcEEEE-Ec-CC-----eEEEEeCCCCCEEEEEecC-CC----------------------CCEEEEEEc
Q 011971 169 YLNLVDWSS-HNVLAV-GL-GN-----CVYLWNACSSKVTKLCDLG-ID----------------------DSVCSVGWA 217 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~-~~-d~-----~V~lwd~~~~~~~~~~~~~-~~----------------------~~V~~v~~s 217 (474)
.+..+.|++ ++.|+. +. ++ .|++||+.+++...+.... +. ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 478999998 555554 44 66 8999999999987777531 11 237899999
Q ss_pred CCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCC
Q 011971 218 NRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293 (474)
Q Consensus 218 p~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 293 (474)
|||++|++++. +.|.+||+.++. .+..+..|...+.+++|++ +.|+.++ ++.|++||+.++. .......+...
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~~~~~~~~~ 194 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQLTADGSTT 194 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEECCCCCCSS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEEeccCCccc
Confidence 99999999986 899999998873 4456777888999999985 6787777 4699999998765 23333333332
Q ss_pred ----------------EEEEEEecCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 011971 294 ----------------VCGLKWSYDNRELASGGNDN---------------------------------RLFVWNQHS-T 323 (474)
Q Consensus 294 ----------------V~~l~~spd~~~lasg~~Dg---------------------------------~v~iwd~~~-~ 323 (474)
+.++.|+|||++|++++.|+ .|++||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47799999999999998765 899999988 7
Q ss_pred cceEEEc--cCCCcEEEEEECCCCCcEEEEec--CCCCCeEEEEECCCCceeeeecCCC-----CeEEEEEcCCCCeEEE
Q 011971 324 QPVLKYC--EHTAAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTTTNTHLSCMDTGS-----QVCNLVWSKNVNELVS 394 (474)
Q Consensus 324 ~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~--Gt~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~ 394 (474)
+...... .|...+..++| |+|+.|+++.. +..+..|++||+.+++....+.... .+..+.|+|+|+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 7654432 47788999999 99997776642 2246789999999998776655332 3568999999996666
Q ss_pred EEecCCCeEEEEECC-CCceeEEEcCCCccEEEE-EECCCCCEEEE-EeCCC--cEEEEeCCC
Q 011971 395 THGYSQNQIIVWRYP-TMSKLATLTGHTFRVLYL-AISPDGQTIVT-GAGDE--TLRFWNVFP 452 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l-~~spdg~~l~t-~s~Dg--~I~iW~l~~ 452 (474)
+..++.+.||.+. .+. ...+..|...|..+ +|+|||+.|+. ++.|+ .+++|++..
T Consensus 354 --~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 354 --SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp --ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred --ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 6678877888765 445 77888888889887 59999998765 44455 899999864
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.5e-22 Score=218.18 Aligned_cols=278 Identities=12% Similarity=0.095 Sum_probs=208.1
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-----CeE
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-----CKR 242 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-----~~~ 242 (474)
..+..++|+++..++++.++.|++||+.+++...+. .+...+.+++|+|||++|+++ .++.|.+||+.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 458899999987777778899999999998876665 456778899999999999986 679999999998 776
Q ss_pred EEEecCCCCc--------------EEEEEecC--CEEEEEe---------------------------------CCCcEE
Q 011971 243 VRTMEGHRLR--------------VGALAWSS--SLLSSGS---------------------------------RDKSIL 273 (474)
Q Consensus 243 ~~~~~~h~~~--------------V~~l~~~~--~~l~sgs---------------------------------~dg~I~ 273 (474)
......+... +.+++|++ +.|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 6555544443 47899984 6888887 446799
Q ss_pred EEECcCCcceEeee-cCcCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcceEEEc--cCCC---cEEEEEEC
Q 011971 274 QRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQPVLKYC--EHTA---AVKAIAWS 342 (474)
Q Consensus 274 iwd~~~~~~~~~~~-~~h~~~V~~l~~spd~~~lasg~~Dg-----~v~iwd~~~~~~~~~~~--~h~~---~V~~l~~s 342 (474)
+||+.++....... ..|...+.+++|+|||++|++++.++ .|++||+.+++....+. .+.. .+..++|+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 99998766322111 25677899999999999999987765 89999999984333332 2222 24678999
Q ss_pred C--CCCcEEEEecCCCCCeEEEEECC-CCceeeeecC-CCCeEE-EEEcCCCCeEEEEEecCCC----eEEEEECCCCce
Q 011971 343 P--HLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDT-GSQVCN-LVWSKNVNELVSTHGYSQN----QIIVWRYPTMSK 413 (474)
Q Consensus 343 p--~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~~-~~~v~~-l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~~ 413 (474)
| +++ +++++. .|+.+++|++. ++..+..+.. ...+.. +.|+|+++.|+++ +..++ .|..||+.+++
T Consensus 319 p~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~~~- 393 (706)
T 2z3z_A 319 PGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDIKGGK- 393 (706)
T ss_dssp TTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEETTCCC-
T ss_pred cCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEcCCCC-
Confidence 9 987 555554 68888888875 5566665543 345666 7999999998876 33444 67777877665
Q ss_pred eEEEcCCCccEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCC
Q 011971 414 LATLTGHTFRVLYLAISPDGQTIVTGAGD----ETLRFWNVFPSP 454 (474)
Q Consensus 414 ~~~l~~h~~~V~~l~~spdg~~l~t~s~D----g~I~iW~l~~~~ 454 (474)
+..+. |...+..++|+|||++|+.++.+ +.|++||+..+.
T Consensus 394 ~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 394 TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 33443 67779999999999988876443 459999998764
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.3e-21 Score=192.24 Aligned_cols=263 Identities=12% Similarity=0.117 Sum_probs=188.9
Q ss_pred CCeEEEE--eCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEecCCCCe--EEEEecCCCCcEEEEEe
Q 011971 186 GNCVYLW--NACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCK--RVRTMEGHRLRVGALAW 258 (474)
Q Consensus 186 d~~V~lw--d~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~---dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~ 258 (474)
++.|++| |..+++...+....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 3456655 45567665544334556788899999999 555544 6899999997765 44455557778888999
Q ss_pred cC--CEEEEEe-CCCcEEEEECcCCcc--eEeeecC---------cCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CC
Q 011971 259 SS--SLLSSGS-RDKSILQRDIRAQED--FVSKLSG---------HKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-ST 323 (474)
Q Consensus 259 ~~--~~l~sgs-~dg~I~iwd~~~~~~--~~~~~~~---------h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~-~~ 323 (474)
++ ++|++++ .++.|.+||+..... .+..+.. +...+.+++|+|+|+++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 84 6777777 789999999964321 1222211 12358899999999977777778899999998 44
Q ss_pred cce--EEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeecC-C------CCeEEEEEcCCC
Q 011971 324 QPV--LKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTH--LSCMDT-G------SQVCNLVWSKNV 389 (474)
Q Consensus 324 ~~~--~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~--~~~--~~~~~~-~------~~v~~l~~s~~~ 389 (474)
+.. ..+.. ....+..++|+|+|+.+++++. .++.|.+|++.. ++. +..+.. . ..+..++|+|+|
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 432 22222 2336788999999998888765 688999999874 443 222221 1 448889999999
Q ss_pred CeEEEEEecCCCeEEEEECC---CCceeEEEcCCCccEEEEEECCCCCEEEEEeCC-CcEEEEeCCC
Q 011971 390 NELVSTHGYSQNQIIVWRYP---TMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD-ETLRFWNVFP 452 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-g~I~iW~l~~ 452 (474)
++|+++ ...++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|+++.
T Consensus 252 ~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 252 HFLYVS-NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CEEEEE-EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CEEEEE-eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 998765 5568999999997 335666666777778999999999998888764 8999997754
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=9.5e-21 Score=187.13 Aligned_cols=262 Identities=7% Similarity=0.063 Sum_probs=189.4
Q ss_pred CCeEEEEeC--CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEecCCC--Ce--EEEEecCCCCcEEE
Q 011971 186 GNCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASR--CK--RVRTMEGHRLRVGA 255 (474)
Q Consensus 186 d~~V~lwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d----g~I~iwd~~~--~~--~~~~~~~h~~~V~~ 255 (474)
++.|++|.+ .+++...+... +...+..++|+|+|++|++++.+ |.|.+|++.. ++ .+.....+......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 467888855 67777666555 66778889999999999999875 7999998865 43 33444456667788
Q ss_pred EEecCCEEEEEe-CCCcEEEEECcCCcceEe-----eec--------CcCCCEEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 011971 256 LAWSSSLLSSGS-RDKSILQRDIRAQEDFVS-----KLS--------GHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQ 320 (474)
Q Consensus 256 l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~-----~~~--------~h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~ 320 (474)
++++++.|++++ .++.|.+|++........ ... .+...+.+++|+|+|++|++++ .++.|.+|++
T Consensus 105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 888777776666 678999999975432110 011 1233468899999999776655 4889999998
Q ss_pred CCCcc------e-------EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeec----CCCCeE
Q 011971 321 HSTQP------V-------LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMD----TGSQVC 381 (474)
Q Consensus 321 ~~~~~------~-------~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~--~~~~~----~~~~v~ 381 (474)
..... + .....+...+..++|+|+++.+++++. .++.|.+||+.+++. +..+. ......
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 75431 1 112244566889999999998877764 589999999987754 22222 124478
Q ss_pred EEEEcCCCCeEEEEEecC-CCeEEEEECC--CCc--eeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEEEEeCCC
Q 011971 382 NLVWSKNVNELVSTHGYS-QNQIIVWRYP--TMS--KLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLRFWNVFP 452 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~-dg~I~iwd~~--~~~--~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~ 452 (474)
.++|+|+|++|+++ ... ++.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|+++.
T Consensus 263 ~i~~spdg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 263 DIHLSPDGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEECTTSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred cEEECCCCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 99999999999875 334 6899999995 343 4555554 55688999999999988887 678999987764
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=1.6e-21 Score=198.26 Aligned_cols=291 Identities=11% Similarity=0.105 Sum_probs=195.5
Q ss_pred ccccCCCCCCCcceeeeeCCC-CcEEEEEcCCeEEEEeCCCC-----------CEEE---EEecCCCCCEEEEEEcCCCC
Q 011971 157 KILDAPALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSS-----------KVTK---LCDLGIDDSVCSVGWANRNT 221 (474)
Q Consensus 157 ~~l~ap~~~~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~-----------~~~~---~~~~~~~~~V~~v~~sp~g~ 221 (474)
++++.+....+..+++++|++ ..+++++....|++|+.... .... ...+.+...|.+++|+|+|+
T Consensus 26 ri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 26 RIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL 105 (434)
T ss_dssp ECSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC
T ss_pred EecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC
Confidence 334433322345689999998 66777776566999874311 1110 11224567899999999999
Q ss_pred EEE----EEeCCCcEEEecCCCC--------e---EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcce
Q 011971 222 HLA----VGTSHGKVQIWDASRC--------K---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 222 ~la----~gs~dg~I~iwd~~~~--------~---~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|+ +|+.|+.|+|||+.++ + .+..+.+|...|.+++|++ ++|++++.||+|++||+++.. .
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~ 184 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-K 184 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-E
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-c
Confidence 999 6788999999998654 1 2556678999999999985 589999999999999999875 3
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC-------CCcEEEEEECCCCCcEEEEecCCC
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-------TAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
.....+|...|++++|+|+|++|++|+.||.|++||.+ ++....+..| ...|.+++|++++..+++... .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~--~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA--A 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--T
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--C
Confidence 55566789999999999999999999999999999998 5555555443 338999999998765555443 2
Q ss_pred C------CeEEEEECCCCce-----eeee-cC-----C--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--e-e
Q 011971 357 D------RCIRFWNTTTNTH-----LSCM-DT-----G--SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS--K-L 414 (474)
Q Consensus 357 d------~~I~iwd~~~~~~-----~~~~-~~-----~--~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~-~ 414 (474)
| ..+++|++..... ...+ .. . .....+.+-++.+.++++ ....+.|.|+...... . .
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~-s~~s~dv~vl~~~~~~~~~~~ 340 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA-SAASTEVSILARQSDQINWES 340 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE-ETTCSBCEEEEECTTSSCEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe-cCCCCceeEEEecCCCCccEE
Confidence 3 2499999986521 1111 11 1 112234444677766665 4455555555543210 0 0
Q ss_pred EEEc------------CCCccEEEEEEC---------------CCCCEEEEEeCCCcEEEEeCCC
Q 011971 415 ATLT------------GHTFRVLYLAIS---------------PDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 415 ~~l~------------~h~~~V~~l~~s---------------pdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
..+. +.......+++. |--..|..-+.||.|..|.+..
T Consensus 341 ~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 341 WLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred EeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1110 111222333331 1124788889999999999987
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=9e-22 Score=213.16 Aligned_cols=274 Identities=10% Similarity=0.082 Sum_probs=206.6
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCC---CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSS---KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~---~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.+..++|+| ++.|+.+.++.|++||+.++ +...+. .+...+.+++|+|||++|++++ ++.|.+||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~--~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLT--HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCC--CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcc--cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 477899999 67788777899999999988 654443 5677899999999999999987 4689999999988776
Q ss_pred EecCCCCc----------------EEEEEecC--CEEEEEeCCC---------------------------------cEE
Q 011971 245 TMEGHRLR----------------VGALAWSS--SLLSSGSRDK---------------------------------SIL 273 (474)
Q Consensus 245 ~~~~h~~~----------------V~~l~~~~--~~l~sgs~dg---------------------------------~I~ 273 (474)
....+... +..++|++ +.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 47789984 6788887665 788
Q ss_pred EEECcC-CcceEeeec--CcCCCEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcceEEEccCCC----cEEEEEE
Q 011971 274 QRDIRA-QEDFVSKLS--GHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQHSTQPVLKYCEHTA----AVKAIAW 341 (474)
Q Consensus 274 iwd~~~-~~~~~~~~~--~h~~~V~~l~~spd~~~lasg~~-----Dg~v~iwd~~~~~~~~~~~~h~~----~V~~l~~ 341 (474)
+||+.+ +.. ..... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|
T Consensus 267 ~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 267 VISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 999987 653 22222 47788999999 99999997754 56899999999987766655443 4568999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECC-CCceeeeec-CCCCeEEE-EEcCCCCeEEEEEecCCC--eEEEEECCC-CceeE
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNL-VWSKNVNELVSTHGYSQN--QIIVWRYPT-MSKLA 415 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~-~~~~v~~l-~~s~~~~~l~~~~g~~dg--~I~iwd~~~-~~~~~ 415 (474)
+|+|+ ++++++ .|+.+++|.+. .+. ...+. +...+..+ .|+|+++.++.+ +..++ .++||++.. +..+.
T Consensus 345 spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 345 LDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp CTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEETTCCCCE
T ss_pred CCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEcCCCCee
Confidence 99998 666665 68877777654 334 44443 45567777 599999988765 44555 899999864 55566
Q ss_pred EEcCCCccEEEEEECCCCCEEEEEeCC----CcEEEEeCCCC
Q 011971 416 TLTGHTFRVLYLAISPDGQTIVTGAGD----ETLRFWNVFPS 453 (474)
Q Consensus 416 ~l~~h~~~V~~l~~spdg~~l~t~s~D----g~I~iW~l~~~ 453 (474)
.+.. ...+..++|+|||++|+....+ ..+.+|+...+
T Consensus 420 ~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 RLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 6665 6678899999999988876544 46888987544
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.7e-21 Score=217.61 Aligned_cols=278 Identities=10% Similarity=0.018 Sum_probs=207.2
Q ss_pred CcceeeeeCCC-CcEEEEEc-C----C--eEEEEeCCCCCEEEEEecCCCCCE-------EEEEEcCCCCEEEEEeCC--
Q 011971 167 DFYLNLVDWSS-HNVLAVGL-G----N--CVYLWNACSSKVTKLCDLGIDDSV-------CSVGWANRNTHLAVGTSH-- 229 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~-d----~--~V~lwd~~~~~~~~~~~~~~~~~V-------~~v~~sp~g~~la~gs~d-- 229 (474)
...+.++.||| ++.|+.+. + + .|++|++.+++...+. .|...+ .+++|+|||+++++++.+
T Consensus 52 ~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 52 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC--CCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcc--cCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 34588999999 66666542 2 3 7999999988754443 567777 899999999977777644
Q ss_pred ----CcEEEecCCCCeEE-------------------------------------------------EEecCCCCcEEEE
Q 011971 230 ----GKVQIWDASRCKRV-------------------------------------------------RTMEGHRLRVGAL 256 (474)
Q Consensus 230 ----g~I~iwd~~~~~~~-------------------------------------------------~~~~~h~~~V~~l 256 (474)
..|.+|++.+++.. ..+.+|...+.++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 35777776554422 1234567778888
Q ss_pred EecCC-EEEEEeCCCcEEEEECcCCcceEeeec---------------------------------------C-------
Q 011971 257 AWSSS-LLSSGSRDKSILQRDIRAQEDFVSKLS---------------------------------------G------- 289 (474)
Q Consensus 257 ~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~---------------------------------------~------- 289 (474)
.|+++ ++++++.++.+.+|.+.........+. .
T Consensus 210 ~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~ 289 (1045)
T 1k32_A 210 VIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPE 289 (1045)
T ss_dssp EEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCC
T ss_pred EEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccc
Confidence 88875 445667788888887643111111111 1
Q ss_pred ----cCCCEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCC-cEEEEEECCCCCcEEEEecCCCCCeEE-E
Q 011971 290 ----HKSEVCGLKWS-YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIR-F 362 (474)
Q Consensus 290 ----h~~~V~~l~~s-pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~ll~sg~Gt~d~~I~-i 362 (474)
|...+.+++|+ |||++|++++ ++.|++|++..++.. .+..|.. .+..++|+ ++..++..+ .+..|. +
T Consensus 290 ~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s---~~~~l~~~ 363 (1045)
T 1k32_A 290 DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT---REGDFLGI 363 (1045)
T ss_dssp SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE---TTEEEEEE
T ss_pred cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE---CCCceEEE
Confidence 12247788888 8888888877 678888888776543 4556777 89999999 887666654 477888 9
Q ss_pred EECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 363 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
||+.+++......+...+..++|+|+|+.|++ +..++.|++||+.+++....+.+|...|..++|||||++|++++.+
T Consensus 364 ~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 364 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp EETTTCCEEECCCCCCSEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EECCCCCceEecCCccceeeeEECCCCCEEEE--ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 99988876555445577999999999999998 6688999999999999888887899999999999999999988765
Q ss_pred C----------cEEEEeCCCCC
Q 011971 443 E----------TLRFWNVFPSP 454 (474)
Q Consensus 443 g----------~I~iW~l~~~~ 454 (474)
+ .|++||+..+.
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccccCCCCCeEEEEECCCCc
Confidence 4 89999998765
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.8e-21 Score=209.72 Aligned_cols=276 Identities=12% Similarity=0.100 Sum_probs=194.6
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCE--EEEEecCC---------------CCCEEEEEEcCCCCEEEEEeCCCcE
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKV--TKLCDLGI---------------DDSVCSVGWANRNTHLAVGTSHGKV 232 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~--~~~~~~~~---------------~~~V~~v~~sp~g~~la~gs~dg~I 232 (474)
++.+.|..+.++..+.++ | +||+.+++. ..+..... ...|.+++|+|+ ..++++. ++.|
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i 103 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL 103 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence 344677744555555555 8 999999987 45543210 156999999999 6666664 5999
Q ss_pred EEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcC-----CcceEeeecCcCCC------------
Q 011971 233 QIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA-----QEDFVSKLSGHKSE------------ 293 (474)
Q Consensus 233 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~-----~~~~~~~~~~h~~~------------ 293 (474)
.+||+.+++.... ..+...+.+++|++ +.|+++ .++.|++||+.+ +. .......+...
T Consensus 104 ~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 104 VGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR-AIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp EEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC-CEESCSCCBTTEEESSCCGGGCT
T ss_pred EEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC-cEEeccCCCCCeEcccchhhhhc
Confidence 9999998876544 44667788899985 577774 789999999987 55 23333333332
Q ss_pred --EEEEEEecCCCEEEEEe---------------------------------CCCcEEEEECCCCcceEEEc--cCCCcE
Q 011971 294 --VCGLKWSYDNRELASGG---------------------------------NDNRLFVWNQHSTQPVLKYC--EHTAAV 336 (474)
Q Consensus 294 --V~~l~~spd~~~lasg~---------------------------------~Dg~v~iwd~~~~~~~~~~~--~h~~~V 336 (474)
+.++.|+|||++|++++ .+..|++||+.+++...... .|...+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL 260 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence 48899999999999987 45689999999887544332 466789
Q ss_pred EEEEECCCCCcEEEEecC--CCCCeEEEEECCCCceeeeec---CCC---CeEEEEEcC--CCCeEEEEEecCCCeEEEE
Q 011971 337 KAIAWSPHLHGLLASGGG--TADRCIRFWNTTTNTHLSCMD---TGS---QVCNLVWSK--NVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~G--t~d~~I~iwd~~~~~~~~~~~---~~~---~v~~l~~s~--~~~~l~~~~g~~dg~I~iw 406 (474)
.+++|+|+++.++++... ..+..|.+||+.+++....+. ... .+..+.|+| +|+++++ +..++.++||
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~--~~~~g~~~l~ 338 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ--SRRDGWNHLY 338 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE--ECTTSSCEEE
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE--EccCCccEEE
Confidence 999999999977765420 011389999999984333322 221 246789999 9997776 6678889999
Q ss_pred ECC-CCceeEEEcCCCccEEE-EEECCCCCEEEEEeCC-C----cEEEEeCCCCC
Q 011971 407 RYP-TMSKLATLTGHTFRVLY-LAISPDGQTIVTGAGD-E----TLRFWNVFPSP 454 (474)
Q Consensus 407 d~~-~~~~~~~l~~h~~~V~~-l~~spdg~~l~t~s~D-g----~I~iW~l~~~~ 454 (474)
++. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|+.|++..+.
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 886 67778888888888877 7999999988765554 4 56666766554
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.9e-20 Score=182.07 Aligned_cols=241 Identities=12% Similarity=0.084 Sum_probs=192.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-------CCcEEEecCCCCeEEEEecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEEC
Q 011971 208 DDSVCSVGWANRNTHLAVGTS-------HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDI 277 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~-------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~ 277 (474)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++|++ + ++++...++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 457889999999999888874 568999999999988887643 3466778874 5 4556666899999999
Q ss_pred cCCcceEeeecCcCC---------CEEEEEEecCCCEEEEEe--CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC
Q 011971 278 RAQEDFVSKLSGHKS---------EVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~---------~V~~l~~spd~~~lasg~--~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (474)
.+.+ .+..+..+.. .+.++.|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KTGE-VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTCC-EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCe-eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 8876 3444444332 278999999999887776 478999999999998888865666789999999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC
Q 011971 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 347 ~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 421 (474)
.++++. .++.|.+||+.+++.+..+.. ...+..++|+|+++.++++ ...++.|.+||..+++.+..+..+.
T Consensus 198 ~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 198 RLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEEEEcCC
Confidence 777765 589999999999998877764 3457889999999988875 4466999999999999888877544
Q ss_pred ccEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCC
Q 011971 422 FRVLYLAISPDGQTIVTGA-GDETLRFWNVFPSPKS 456 (474)
Q Consensus 422 ~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~~~~~ 456 (474)
. ..++|+|||++|+.++ .++.|.+||+.++...
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 2 5699999999766555 6899999999876543
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.2e-20 Score=183.71 Aligned_cols=260 Identities=12% Similarity=0.080 Sum_probs=182.0
Q ss_pred ceeeeeCCC-Cc-EEEEEcC-CeEEEEeCC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecC---CC
Q 011971 169 YLNLVDWSS-HN-VLAVGLG-NCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDA---SR 239 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d-~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~---~~ 239 (474)
.+..++|++ ++ +++++.+ +.|.+|++. +++...+..+.....+.+++|+|+|++|++++. ++.|.+||+ ..
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 367789998 55 4444454 899999998 666554443333348899999999998877765 888999999 44
Q ss_pred CeEEEEecCCCCcEEEEEecC--CEEEEEe-CCCcEEEEECcCCcceEe----eec-CcCCCEEEEEEecCCCEEEEEe-
Q 011971 240 CKRVRTMEGHRLRVGALAWSS--SLLSSGS-RDKSILQRDIRAQEDFVS----KLS-GHKSEVCGLKWSYDNRELASGG- 310 (474)
Q Consensus 240 ~~~~~~~~~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~----~~~-~h~~~V~~l~~spd~~~lasg~- 310 (474)
.+.+..+..+ ..+.+++|++ +.+++++ .++.|.+||+........ ... .....+.+++|+|++++|++++
T Consensus 119 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 119 VGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp EEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 4455555544 3588899984 5677766 899999999987332221 222 2345788999999999776554
Q ss_pred CCCcEEEEECCC--Ccc--eEEEcc---C---CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC--C--CceeeeecC
Q 011971 311 NDNRLFVWNQHS--TQP--VLKYCE---H---TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--T--NTHLSCMDT 376 (474)
Q Consensus 311 ~Dg~v~iwd~~~--~~~--~~~~~~---h---~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~--~--~~~~~~~~~ 376 (474)
.++.|.+||+.. ++. ...+.. . ...+..++|+|+++.+++++. .++.|.+||+. + .+.+..+..
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecC
Confidence 789999999953 432 222221 1 235678999999998887765 68999999998 3 344555555
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC--CC--ceeEEEcCCCccEEEEEECCCC
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--TM--SKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~--~~~~~l~~h~~~V~~l~~spdg 433 (474)
...+..++|+|+++.|+++ +..++.|.+|++. ++ +.+..+... ....+++|.++.
T Consensus 276 ~~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp SSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CCccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 5568999999999998884 4468999999554 54 334444432 345567776643
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3e-20 Score=180.79 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=181.4
Q ss_pred EEcCCCCE-EEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeC-CCcEEEEECcCCcceEeeecCc
Q 011971 215 GWANRNTH-LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSR-DKSILQRDIRAQEDFVSKLSGH 290 (474)
Q Consensus 215 ~~sp~g~~-la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h 290 (474)
.|.+++.+ ++++..++.|.+||+.+++.+..+..+...+ .++|++ +.+++++. ++.|.+||+.+.......+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555554 6677778999999999999988887777777 999984 55555554 8999999998877425555556
Q ss_pred CCCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe-EEEEECC
Q 011971 291 KSEVCGLKWSYDNRELASGGNDN---RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTT 366 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg---~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~-I~iwd~~ 366 (474)
.....+++|+|++++|+++..++ .|.+||+.+++.+..+.. ...+.+++|+|+++.+++++. .++. |.+|++.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~i~~~~~~ 159 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDR--SSANTVRRFKID 159 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTEEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEec--CCCceEEEEEEC
Confidence 66555599999999999655553 899999999988877754 445689999999998888765 5677 9999987
Q ss_pred CCcee-----eeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---eEEEcCCCccEEEEEECCCCCEEEE
Q 011971 367 TNTHL-----SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK---LATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 367 ~~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
....+ ..+..+..+..++|+|++++++++ +..++.|.+||+.+++. +..+..+ ..+..++|+|||++|+.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEE
T ss_pred CCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEE
Confidence 64432 333456678999999999987775 55789999999999888 7777644 56788999999997766
Q ss_pred Ee-CCCcEEEEeCCCCCC
Q 011971 439 GA-GDETLRFWNVFPSPK 455 (474)
Q Consensus 439 ~s-~Dg~I~iW~l~~~~~ 455 (474)
++ .++.|.+||+.++..
T Consensus 238 ~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECSSEEEEEEEETTTTEE
T ss_pred EEcCCCEEEEEECCCCce
Confidence 54 578899999987654
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=2.8e-20 Score=181.68 Aligned_cols=275 Identities=13% Similarity=0.043 Sum_probs=190.2
Q ss_pred eeCCC-CcE-EEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEecCCCCeEEEEecCC
Q 011971 173 VDWSS-HNV-LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 173 l~~s~-~~~-la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
+++++ +.+ ++.+.++.|++||..+++....+..+....+..++|+|+|+++++ +..++.|.+||+.+++.+..+..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 34555 344 444568999999999999888876544336889999999986654 456899999999999988777633
Q ss_pred C------CcEEEEEecC--CEEEEEeCC------------CcEEEEECcCCcc--eEeeecCcCCCEEEEEEecCCCEEE
Q 011971 250 R------LRVGALAWSS--SLLSSGSRD------------KSILQRDIRAQED--FVSKLSGHKSEVCGLKWSYDNRELA 307 (474)
Q Consensus 250 ~------~~V~~l~~~~--~~l~sgs~d------------g~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spd~~~la 307 (474)
. ..+..++|++ ++|++++.+ +.|.+||+.+... .+..+. +...+.+++|+|+++ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 2367888974 688888765 8999999987432 122232 334688999999999 66
Q ss_pred EEeCCCcEEEEECCCCcceEEEccCCC------------------------cEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 308 SGGNDNRLFVWNQHSTQPVLKYCEHTA------------------------AVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 308 sg~~Dg~v~iwd~~~~~~~~~~~~h~~------------------------~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+++. .|++||+.+++.+..+..+.. ....+++++++........ ....+..+
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~ 238 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD--LLYGYLSV 238 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--EEEEEEEE
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--cceeEEEE
Confidence 5544 499999999988777653320 3455677765422111100 01112224
Q ss_pred ECCCCceee--eecCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 364 NTTTNTHLS--CMDTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 364 d~~~~~~~~--~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
|..+++... .-..+..+..++|+| +++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--V--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEE--E--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec
Confidence 444433211 112456788999999 9999988 4 789999999999888877643 3477899999999999888
Q ss_pred CCCcEEEEeCCCCCCCCC
Q 011971 441 GDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 441 ~Dg~I~iW~l~~~~~~~~ 458 (474)
.++.|++||+.+......
T Consensus 314 ~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp BSSEEEEEETTTTEEEEE
T ss_pred CCCeEEEEeccccceeee
Confidence 899999999987765443
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.5e-20 Score=178.44 Aligned_cols=222 Identities=13% Similarity=0.116 Sum_probs=172.7
Q ss_pred EeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcC-CcceEeeecCc-CCCEEEEEEec
Q 011971 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA-QEDFVSKLSGH-KSEVCGLKWSY 301 (474)
Q Consensus 226 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h-~~~V~~l~~sp 301 (474)
++.++.|++||+.+++.. .+..|...|.+++|++ .+|++++ ++.|.+||+.+ .. .......| ...|.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECC
Confidence 456889999999988866 4455889999999984 6777776 78999999988 65 34444444 46789999999
Q ss_pred CCCEEEEEeC--CC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCceeeeec
Q 011971 302 DNRELASGGN--DN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT--TTNTHLSCMD 375 (474)
Q Consensus 302 d~~~lasg~~--Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~--~~~~~~~~~~ 375 (474)
++++|++++. ++ .|.+|++.+++ ...+..+ ..+..++|+|+++.+++++. .++.+++|++ .++.......
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEECCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEccc
Confidence 9999999983 33 45555555554 4444343 34899999999998886665 6888888884 5555555555
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceeEEEcCCCccEEEEEECCCCCEEEEEeCC-----------C
Q 011971 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP-TMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD-----------E 443 (474)
Q Consensus 376 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-----------g 443 (474)
+...+.++.|+|+++.++++ +..++.+.||++. ....+..+..|...+..++|+|+|++|++++.+ +
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 66789999999999998875 4458889999986 566777888888899999999999999988766 5
Q ss_pred cEEEEeCCCCCC
Q 011971 444 TLRFWNVFPSPK 455 (474)
Q Consensus 444 ~I~iW~l~~~~~ 455 (474)
.|++||+..+..
T Consensus 250 ~l~~~d~~~~~~ 261 (297)
T 2ojh_A 250 RVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEETTSCSC
T ss_pred EEEEEecCCCCc
Confidence 699999987654
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.9e-20 Score=210.71 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=213.0
Q ss_pred ceeeeeCC-C-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEE-EecCCCCeEEE
Q 011971 169 YLNLVDWS-S-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVGTSHGKVQ-IWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s-~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~gs~dg~I~-iwd~~~~~~~~ 244 (474)
.+..++|+ | +..|+.+.++.|++|+..+++...+. .+.. .+.+++|+ +|+.|++++.++.+. +||+.+++..
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~- 372 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE- 372 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-
Confidence 57899999 8 66777777999999999988765532 5666 89999999 999999999888888 9998877654
Q ss_pred EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC---------
Q 011971 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--------- 313 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg--------- 313 (474)
.+.+|...+..++|++ +.|++++.++.|++||+.++. ......+|...+.+++|+|||++|++++.++
T Consensus 373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 4448889999999984 789999999999999998876 4455557889999999999999999887654
Q ss_pred -cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----------------------
Q 011971 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---------------------- 370 (474)
Q Consensus 314 -~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---------------------- 370 (474)
.|++||+.+++ +..+..|...+..++|+|+|+.|++.+ .++...+|+......
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999999887 677778888999999999999777655 345455554322111
Q ss_pred ---------------------eeeec-CCCCeEEEEEcCCCCeEEEE-----------EecCCCeEEEEECCCCceeEEE
Q 011971 371 ---------------------LSCMD-TGSQVCNLVWSKNVNELVST-----------HGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 371 ---------------------~~~~~-~~~~v~~l~~s~~~~~l~~~-----------~g~~dg~I~iwd~~~~~~~~~l 417 (474)
+..+. +...+..+.+++++..+++. .......|.+||+.+++... +
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l 606 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V 606 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e
Confidence 11111 23568899999999877751 12235578899998877533 3
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 418 ~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
. ..+..++|||||++|++++.| .|++|++.++.
T Consensus 607 ~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 K---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred e---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2 568899999999999999877 89999998766
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=208.95 Aligned_cols=275 Identities=12% Similarity=0.147 Sum_probs=199.2
Q ss_pred eeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEecCC
Q 011971 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---SVCSVGWANRNTHLAVGTS---------HGKVQIWDAS 238 (474)
Q Consensus 172 ~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~---~V~~v~~sp~g~~la~gs~---------dg~I~iwd~~ 238 (474)
.+.|++ +.+++.+.++.|++||+.+++...+.. ++.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 568888 567777778999999999999877764 2222 4899999999999999876 6899999999
Q ss_pred CCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE-----------------EEEEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----------------CGLKW 299 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~ 299 (474)
+++.+... .....+..++|++ +.|+.+. ++.|++||+.++........++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 88763111 1124688899985 6777775 78999999987763222223333323 48999
Q ss_pred ecCCCEEEEEeCCC----------------------------------cEEEEECCCCcce--EE------EccCCCcEE
Q 011971 300 SYDNRELASGGNDN----------------------------------RLFVWNQHSTQPV--LK------YCEHTAAVK 337 (474)
Q Consensus 300 spd~~~lasg~~Dg----------------------------------~v~iwd~~~~~~~--~~------~~~h~~~V~ 337 (474)
+|||++|++++.|. .|++||+.+++.. .. +..|...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999988652 7899999987653 12 235888899
Q ss_pred EEEECCCCCcEEEEec--CCCCCeEEEEE----CCCCceeeee-----cCCCCeE-----EEEEcCCCCeEEEEEecCCC
Q 011971 338 AIAWSPHLHGLLASGG--GTADRCIRFWN----TTTNTHLSCM-----DTGSQVC-----NLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~--Gt~d~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~s~~~~~l~~~~g~~dg 401 (474)
.++|+||+. ++++.. +.....|.+|| +.++++...+ .+...+. .+.|+|+|+.++......++
T Consensus 257 ~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 257 WLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 999999965 665532 11124588999 8887765554 2344455 78999999987764344555
Q ss_pred --eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC-----CcEEEEeCCC
Q 011971 402 --QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD-----ETLRFWNVFP 452 (474)
Q Consensus 402 --~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-----g~I~iW~l~~ 452 (474)
.|.+|++.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 336 ~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 336 YKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 67777876665 55666677778888877 88887776655 8899998865
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.9e-20 Score=202.10 Aligned_cols=267 Identities=10% Similarity=0.056 Sum_probs=192.7
Q ss_pred ceeeeeCCC-CcEEEEEcC----------CeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 169 YLNLVDWSS-HNVLAVGLG----------NCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d----------~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
.+..++|+| ++.|+.+.+ +.|++||+.+++...+... ++...+.+++|+|||++||.++. +.|.+||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 478999999 666666543 7899999999987444322 33445889999999999999886 7999999
Q ss_pred CCCCeEEEEecCCCCcE------------------EEEEecC--CEEEEEeCCC--------------------------
Q 011971 237 ASRCKRVRTMEGHRLRV------------------GALAWSS--SLLSSGSRDK-------------------------- 270 (474)
Q Consensus 237 ~~~~~~~~~~~~h~~~V------------------~~l~~~~--~~l~sgs~dg-------------------------- 270 (474)
+.+++.......+...+ .+++|++ +.|++++.++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99988777666544433 7899985 6788877543
Q ss_pred --------cEEEEECcCCcceEeeecCc------CCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCCcceEEEcc-
Q 011971 271 --------SILQRDIRAQEDFVSKLSGH------KSEVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQPVLKYCE- 331 (474)
Q Consensus 271 --------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spd~~~lasg~~----Dg~v~iwd~~~~~~~~~~~~- 331 (474)
.|.+||+.+... ...+..+ ...+..++|+|||++|++... +..|++||+.+++....+..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 799999987662 2334433 667999999999998877653 35799999999887665543
Q ss_pred CCCcEE----EEEECCCCCcEEEE-ecCCCCC------eEEEEE-CCCCc--eeeeec-CCCCeEE-EEEcCCCCeEEEE
Q 011971 332 HTAAVK----AIAWSPHLHGLLAS-GGGTADR------CIRFWN-TTTNT--HLSCMD-TGSQVCN-LVWSKNVNELVST 395 (474)
Q Consensus 332 h~~~V~----~l~~sp~~~~ll~s-g~Gt~d~------~I~iwd-~~~~~--~~~~~~-~~~~v~~-l~~s~~~~~l~~~ 395 (474)
+...+. .++|+|+|+.|++. +. .++ .|.+|| ..++. +...+. ....+.. +.|+|+++.|+.+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 377 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL 377 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence 334443 78999999988775 43 566 577788 44444 144443 3344555 6999999999875
Q ss_pred EecCC--CeEEEEECCCCc--eeEEEcC---CCccEEEEEECCCCCEEEEEe
Q 011971 396 HGYSQ--NQIIVWRYPTMS--KLATLTG---HTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 396 ~g~~d--g~I~iwd~~~~~--~~~~l~~---h~~~V~~l~~spdg~~l~t~s 440 (474)
+..+ +.+.||++.... ....+.. |...+..++|+|||++|+...
T Consensus 378 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 378 -STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp -ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred -EcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 3344 789999986432 3334443 677789999999999887653
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=6e-20 Score=182.71 Aligned_cols=280 Identities=13% Similarity=0.090 Sum_probs=195.9
Q ss_pred cceeeeeCCC-CcEEEE-Ec-CC--eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE
Q 011971 168 FYLNLVDWSS-HNVLAV-GL-GN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~-~~-d~--~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
.|+....|+| ++.|+. +. ++ .|++||+.+++...+.. ++...+.++.|+|||+.|+.+..++.|.+||+.+++.
T Consensus 36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 4555678998 554444 44 44 59999999998877653 4444555678999999999999999999999999987
Q ss_pred EEEecCCCCcEEEEEe--c--CCEEEEE----------------------eCCCcEEEEECcCCcceEeeecCcCCCEEE
Q 011971 243 VRTMEGHRLRVGALAW--S--SSLLSSG----------------------SRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~--~--~~~l~sg----------------------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (474)
...+..+...+....| + +..++.. ..+..|.+||+.+++ ...+..+...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGH 192 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccc
Confidence 7777767666655554 4 3455432 244679999998875 4445566778999
Q ss_pred EEEec-CCCEEEEEeCC------CcEEEEECCCCcceEEEccCC--CcEEEEEECCCCCcEEEEecC--CCCCeEEEEEC
Q 011971 297 LKWSY-DNRELASGGND------NRLFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHLHGLLASGGG--TADRCIRFWNT 365 (474)
Q Consensus 297 l~~sp-d~~~lasg~~D------g~v~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~ll~sg~G--t~d~~I~iwd~ 365 (474)
+.|+| ||+.|+....+ ..|.++|+..++. ..+..+. ..+..++|+|+|+.|+..... ..+..|.+||+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 99999 99999887763 3788889876543 4444444 357889999999988665431 11234999999
Q ss_pred CCCceeeeecCCC------CeEEEEEcCCCCeEEEEEe-------cCCCeEEEEECCCCceeEEEcCCCc----------
Q 011971 366 TTNTHLSCMDTGS------QVCNLVWSKNVNELVSTHG-------YSQNQIIVWRYPTMSKLATLTGHTF---------- 422 (474)
Q Consensus 366 ~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~~g-------~~dg~I~iwd~~~~~~~~~l~~h~~---------- 422 (474)
.+++......... ....+.|+|+|+.|+.+.. ..+..|++||+.+++. ..+..|..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSS
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccc
Confidence 9987543322211 0122379999999886421 4567999999988664 45555555
Q ss_pred -cEEEEEECCCCCEEEEEe-CCCcEEEEeCCC
Q 011971 423 -RVLYLAISPDGQTIVTGA-GDETLRFWNVFP 452 (474)
Q Consensus 423 -~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~ 452 (474)
.+..++|+|||+.|+.++ .+|...+|.+.-
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 578899999999887665 577777776654
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=3.8e-19 Score=176.31 Aligned_cols=264 Identities=10% Similarity=0.011 Sum_probs=184.0
Q ss_pred CeEEEEe--CCCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC-CCeEEEEecCC-CCcEEEEEecC
Q 011971 187 NCVYLWN--ACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRTMEGH-RLRVGALAWSS 260 (474)
Q Consensus 187 ~~V~lwd--~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~-~~~~~~~~~~h-~~~V~~l~~~~ 260 (474)
+.|++|+ ..++++..+... +....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 5788766 456766544322 334578899999999999998887 99999997 77765433210 12244577774
Q ss_pred --CE--EEEEe-------------CCCcEEEEECcCCcceEeeec----CcCCCEEEEEEecCCCEEEEEeC-CCcEEEE
Q 011971 261 --SL--LSSGS-------------RDKSILQRDIRAQEDFVSKLS----GHKSEVCGLKWSYDNRELASGGN-DNRLFVW 318 (474)
Q Consensus 261 --~~--l~sgs-------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spd~~~lasg~~-Dg~v~iw 318 (474)
+. ++++. .++.+.+|++.........+. .+...+.+++|+|||++|+++.. ++.|++|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 42 44443 689999999975332332222 24567999999999998887764 6799999
Q ss_pred ECC-CCcce--EEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC--CCcee---eeec---CC----C---
Q 011971 319 NQH-STQPV--LKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNTHL---SCMD---TG----S--- 378 (474)
Q Consensus 319 d~~-~~~~~--~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~--~~~~~---~~~~---~~----~--- 378 (474)
|+. +++.. ..+. .|...+..++|+|+|+.++++.. .++.|.+|++. +++.. ..+. .+ .
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 250 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence 998 66543 2333 24567999999999997777654 57899999765 56542 1221 11 2
Q ss_pred ----CeEEEE-EcCCCCeEEEEEecCC----CeEEEEECC-CCceeE---EEcCCCccEEEEEECC---CCCEEEEEeCC
Q 011971 379 ----QVCNLV-WSKNVNELVSTHGYSQ----NQIIVWRYP-TMSKLA---TLTGHTFRVLYLAISP---DGQTIVTGAGD 442 (474)
Q Consensus 379 ----~v~~l~-~s~~~~~l~~~~g~~d----g~I~iwd~~-~~~~~~---~l~~h~~~V~~l~~sp---dg~~l~t~s~D 442 (474)
.+..++ |+|+|++|+++....+ +.|.+|++. +++... .+..+...+..++|+| ||++|++++.+
T Consensus 251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 478899 9999999987543333 289999996 565433 2334555567889999 89999998865
Q ss_pred -CcEEEEeCCCC
Q 011971 443 -ETLRFWNVFPS 453 (474)
Q Consensus 443 -g~I~iW~l~~~ 453 (474)
+.|.+|++...
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 89999999765
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5e-20 Score=194.09 Aligned_cols=265 Identities=10% Similarity=0.029 Sum_probs=188.0
Q ss_pred cceeeeeCCC-CcEEEE-Ec-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEecCCC--
Q 011971 168 FYLNLVDWSS-HNVLAV-GL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASR-- 239 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~-~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~---dg~I~iwd~~~-- 239 (474)
..+..+.+++ ++.|+. +. ++.+.||++.+++..++.. .+...+.+++|+|| ++++++.. +....||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 3488888988 455554 44 8999999997777655542 33368999999999 77777764 44556655432
Q ss_pred -CeEEEEec-CCCCcEEEEEecCC-EEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC----
Q 011971 240 -CKRVRTME-GHRLRVGALAWSSS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND---- 312 (474)
Q Consensus 240 -~~~~~~~~-~h~~~V~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D---- 312 (474)
+... .+. .+...+.+++++++ .+++.+.++.+.+||+.+++ ...+..+.. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--LRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 3322 333 23333555555653 44455555556699998765 223333333 789999999999988877
Q ss_pred CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeec-CCCCeEEEE-----
Q 011971 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMD-TGSQVCNLV----- 384 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd~~~~~~~~~~~-~~~~v~~l~----- 384 (474)
+.|++||+.+++.. .+..|...+..++|+|||+.|+ ++. .++ .|++||+.+++.. .+. +...+..+.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccc
Confidence 78999999888754 6778889999999999999777 443 577 8999999998877 433 333455556
Q ss_pred ---EcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCc---EEEEeCCC
Q 011971 385 ---WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDET---LRFWNVFP 452 (474)
Q Consensus 385 ---~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~---I~iW~l~~ 452 (474)
|+|+|..+++ +..++.+++|++ ++.+. .+.+.|.+++|+ ||+++++++.+.+ |++|+...
T Consensus 250 ~~~~spdg~~~~~--~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 250 WLGYLPDGRLAVV--ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEECTTSCEEEE--EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ceeEcCCCcEEEE--EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999955555 668999999999 55443 345678999999 9999998888754 66676643
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.1e-20 Score=194.80 Aligned_cols=234 Identities=9% Similarity=-0.059 Sum_probs=173.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeEEEEecCCC-CcEEEEEecCC-EEEEEeC---CCcEEEEECcC--
Q 011971 208 DDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHR-LRVGALAWSSS-LLSSGSR---DKSILQRDIRA-- 279 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~~-~l~sgs~---dg~I~iwd~~~-- 279 (474)
..+|.+++|+|||++||+++. +|+++||++.+++.. .+..|. ..+..++|+++ ++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999766654 455454 68999999976 4555554 45566665544
Q ss_pred CcceEeeecCcCCCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecC-CCC
Q 011971 280 QEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG-TAD 357 (474)
Q Consensus 280 ~~~~~~~~~~h~~~V~~l~~spd~~~-lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G-t~d 357 (474)
..... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++....... .. .+++|+|||+.++.++.. ...
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCCC
Confidence 33222 33222 23446688888853 33344445566999998876544433 33 789999999977655420 011
Q ss_pred CeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceeEEEcCCCccEEEEE-------
Q 011971 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMSKLATLTGHTFRVLYLA------- 428 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~------- 428 (474)
+.|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+.+|...+..++
T Consensus 175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 7799999999887755556677899999999999995 55777 9999999998887 7778887777777
Q ss_pred -ECCCCCEEEEEeCCCcEEEEeC
Q 011971 429 -ISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 429 -~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|+|||.++++++.|+++++|++
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999998999999999999999
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=5.1e-19 Score=171.70 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=184.3
Q ss_pred eeeeeCCC-CcE-EEEEc-CCeEEEEeCCCCCEEEEEecCCC----CCEEEEEEcCCCCEEEEEe------------CCC
Q 011971 170 LNLVDWSS-HNV-LAVGL-GNCVYLWNACSSKVTKLCDLGID----DSVCSVGWANRNTHLAVGT------------SHG 230 (474)
Q Consensus 170 v~~l~~s~-~~~-la~~~-d~~V~lwd~~~~~~~~~~~~~~~----~~V~~v~~sp~g~~la~gs------------~dg 230 (474)
+..++|++ ++. ++++. ++.|++||+.+++....+..++. ..+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 56788988 434 44443 67999999999998877765432 2677899999999999886 579
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 308 (474)
.|.+||+.+++.+..+.. ...+.+++|++ +.|+++ ++.|.+||+.+.+ ....+..+.. ...+.|+|++..|+.
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEee
Confidence 999999999988877764 44577888974 566666 6899999998776 3444433320 012368999887665
Q ss_pred EeCCC------------------------cEEEEECCCCcce-EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 309 GGNDN------------------------RLFVWNQHSTQPV-LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 309 g~~Dg------------------------~v~iwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
.+.++ .|.+||+.+++.. ..+..+...+.+++|+|+++.++++ ++.|.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~ 265 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESF 265 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEE
Confidence 54332 4689999988764 2344566788899999999876664 6899999
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 421 (474)
|+.+++.+..+..+..+.+++|+|++++|++ +..++.|.+||+.+++.+..+..+.
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9999999888888888999999999999988 5678999999999999988886543
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=9.3e-20 Score=185.24 Aligned_cols=250 Identities=16% Similarity=0.207 Sum_probs=176.8
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----------eEEEE-----ecCCCC
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----------KRVRT-----MEGHRL 251 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----------~~~~~-----~~~h~~ 251 (474)
+.|++|+.... + ....+..+++++++.++++|+.+| |+||+.... ..+.. ...+..
T Consensus 23 ~~vri~~~~~~-------~-~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------L-PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS-------C-CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc-------c-CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 67888875311 1 244688999999999999999888 888764211 01111 113567
Q ss_pred cEEEEEecC--CEEE----EEeCCCcEEEEECcCC-----cc-----eEeeecCcCCCEEEEEEecC-CCEEEEEeCCCc
Q 011971 252 RVGALAWSS--SLLS----SGSRDKSILQRDIRAQ-----ED-----FVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (474)
Q Consensus 252 ~V~~l~~~~--~~l~----sgs~dg~I~iwd~~~~-----~~-----~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~ 314 (474)
.|.+++|++ ++|+ +|+.|+.|++||+.+. .. ....+.+|...|.+++|+|+ +.+|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999984 6788 7889999999998764 11 14556789999999999997 889999999999
Q ss_pred EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeEEEEEc
Q 011971 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWS 386 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s 386 (474)
|++||++++..+.....|...|.+++|+|++..|+ +|+ .|+.|++||++ ++....+.. ...+.++.|+
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~la-sgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLA-VGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEE-EEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEE-EEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 99999999877767778899999999999988555 444 79999999998 555544431 1268999999
Q ss_pred CCCCeEEEEEecCCC------eEEEEECCCCc-----eeEEEc-------CCCccEEEEEECCCCCEEEEEeC-CCcEEE
Q 011971 387 KNVNELVSTHGYSQN------QIIVWRYPTMS-----KLATLT-------GHTFRVLYLAISPDGQTIVTGAG-DETLRF 447 (474)
Q Consensus 387 ~~~~~l~~~~g~~dg------~I~iwd~~~~~-----~~~~l~-------~h~~~V~~l~~spdg~~l~t~s~-Dg~I~i 447 (474)
+++.++++.. ..+| .+++|++.... ....+. +....-..+.+-++.+++++++. .+.|.+
T Consensus 250 ~~~~~l~~~~-~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 250 GTYVFAIVYA-AADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp ETTEEEEEEE-ETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred cCceEEEEEc-cCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 9888876653 3343 48999997642 112221 11222233444467776665544 344555
Q ss_pred EeC
Q 011971 448 WNV 450 (474)
Q Consensus 448 W~l 450 (474)
...
T Consensus 329 l~~ 331 (434)
T 2oit_A 329 LAR 331 (434)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3.5e-18 Score=167.56 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=170.4
Q ss_pred eeeeeCCC-CcEEEEEc---CCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCC---C
Q 011971 170 LNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR---C 240 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~---d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~---~ 240 (474)
...++|++ +++++++. ++.|++|++.+++...+..+ .+...+..++|+|+|++|++++ .++.|.+|++.. .
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 45688888 55666665 47999999987775444332 3567788999999999988888 678999999962 2
Q ss_pred eEEEEecC---------CCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceE--eeecC-cCCCEEEEEEecCCCEE
Q 011971 241 KRVRTMEG---------HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV--SKLSG-HKSEVCGLKWSYDNREL 306 (474)
Q Consensus 241 ~~~~~~~~---------h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~-h~~~V~~l~~spd~~~l 306 (474)
+.+..+.. +...+.+++|++ +++++...++.|.+||+....... ..+.. ....+..++|+|||++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 33333322 123588899984 566666778899999998333221 12222 23468889999999966
Q ss_pred EE-EeCCCcEEEEECCC--Ccc--eEEEccCC------CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC---ceee
Q 011971 307 AS-GGNDNRLFVWNQHS--TQP--VLKYCEHT------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLS 372 (474)
Q Consensus 307 as-g~~Dg~v~iwd~~~--~~~--~~~~~~h~------~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~---~~~~ 372 (474)
++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|+.+++++. .++.|.+|++... +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeE
Confidence 65 56688999999874 432 22332222 45889999999998877765 5899999998732 3444
Q ss_pred eecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCcee
Q 011971 373 CMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY--PTMSKL 414 (474)
Q Consensus 373 ~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~ 414 (474)
.+.. +..+..++|+|++++|+++ +..++.|.+|++ .+++..
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 4444 5568999999999998885 445689999954 455543
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=2.9e-17 Score=160.47 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=189.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEecCCCCeEEEEec-CCCCcEEEEEec--C
Q 011971 208 DDSVCSVGWANRNTHLAVGTSH------------------------GKVQIWDASRCKRVRTME-GHRLRVGALAWS--S 260 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~--~ 260 (474)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988887776 479999999898877665 455678999997 4
Q ss_pred CEEEEEeCCCcEEEEECcCCcceEeee---------cCcCCCEEEEEEec-CCCEEEEEe-CCCcEEEEECCCCcceEEE
Q 011971 261 SLLSSGSRDKSILQRDIRAQEDFVSKL---------SGHKSEVCGLKWSY-DNRELASGG-NDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~sp-d~~~lasg~-~Dg~v~iwd~~~~~~~~~~ 329 (474)
+++++...++.|++||.......+..+ ..+...+++|+++| ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 688888889999999986543233333 34455799999999 788888886 689999999 566666666
Q ss_pred ccC----------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeEEEEEcCCCCeEEEEE
Q 011971 330 CEH----------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 330 ~~h----------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~ 396 (474)
... -.....|+++|++..++++.. .++.|++||..+++.+..+. .+..+..++|+| + .++...
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~ 257 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G-FLFAVN 257 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-EEEEEE
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-EEEEeC
Confidence 422 234889999999666888875 68899999999899888874 345788999999 2 222221
Q ss_pred ------ecCCCeEEEEECCCCceeEEEc---CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 397 ------GYSQNQIIVWRYPTMSKLATLT---GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 397 ------g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
...++.|++|++.+++.+..+. ++...+..|+++|+|.++++...++.|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 2345689999999999998884 67778999999999988888889999999998754
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=4e-17 Score=160.96 Aligned_cols=257 Identities=12% Similarity=0.060 Sum_probs=175.4
Q ss_pred ceeeeeCCC-CcEEEEEcC-----CeEEEEeCCC--CCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCC
Q 011971 169 YLNLVDWSS-HNVLAVGLG-----NCVYLWNACS--SKVTKLCDL-GIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDAS 238 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d-----~~V~lwd~~~--~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~ 238 (474)
....++|++ +++|+++.. +.|.+|++.. ++...+... .+......+++ ++++|++++ .++.|.+|++.
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBC
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeC
Confidence 356688898 555555543 6999998765 555444433 24557788888 788777776 57899999997
Q ss_pred CCeEEEE------ecC--------CCCcEEEEEecC--CEEEE-EeCCCcEEEEECcCCcc------e------EeeecC
Q 011971 239 RCKRVRT------MEG--------HRLRVGALAWSS--SLLSS-GSRDKSILQRDIRAQED------F------VSKLSG 289 (474)
Q Consensus 239 ~~~~~~~------~~~--------h~~~V~~l~~~~--~~l~s-gs~dg~I~iwd~~~~~~------~------~~~~~~ 289 (474)
....+.. ..+ +...+.+++|++ +.|++ +..++.|.+|++..... + ......
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 5432211 111 233468899984 54544 44588999999875442 1 122233
Q ss_pred cCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCcc--eEEEc---cCCCcEEEEEECCCCCcEEEEecCCC-CCeEEE
Q 011971 290 HKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQP--VLKYC---EHTAAVKAIAWSPHLHGLLASGGGTA-DRCIRF 362 (474)
Q Consensus 290 h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~~~~--~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~-d~~I~i 362 (474)
+...+..++|+|||++|++++ .++.|.+||+.+++. +..+. .+...+..++|+|+++.|+++.. . ++.|.+
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v 286 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAI 286 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEE
Confidence 456688999999999887777 689999999987654 22332 23355789999999998877764 4 589999
Q ss_pred EECC--CCc--eeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC--CCceeEEE-cCCCccEEEEEEC
Q 011971 363 WNTT--TNT--HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--TMSKLATL-TGHTFRVLYLAIS 430 (474)
Q Consensus 363 wd~~--~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l-~~h~~~V~~l~~s 430 (474)
|++. +++ .+..+..+..+..++|+|+|++|+++ +..++.|.+|++. +++..... ..+...+.|++|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9985 454 44455556678899999999999885 4467899997554 55544332 1244568888885
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=2.6e-18 Score=170.92 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=184.5
Q ss_pred ceeeeeCCC-CcEEEEEcC----CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 169 YLNLVDWSS-HNVLAVGLG----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d----~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
++..+.|+| ++.|+...+ ..|++||+.+++...+.. ++......+.|+|+|++|+.++.++.|.+||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 466778998 555555432 379999999988765542 22222334789999999999999999999999988766
Q ss_pred EEecCCCCcEEE---EE----------------ecC--CEEEEE-----eCCCcEEEEECcCCcceEeeecCcCCCEEEE
Q 011971 244 RTMEGHRLRVGA---LA----------------WSS--SLLSSG-----SRDKSILQRDIRAQEDFVSKLSGHKSEVCGL 297 (474)
Q Consensus 244 ~~~~~h~~~V~~---l~----------------~~~--~~l~sg-----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 297 (474)
.....+...... ++ |++ +.++.+ ..+..|.+||+.++. ...+..+...+..+
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--LEVIHQDTAWLGHP 193 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--EEEEEEESSCEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--EEeeccCCcccccc
Confidence 655544442222 22 221 222222 356689999998765 23333567789999
Q ss_pred EEec-CCCEEEEEeCC------CcEEEEECCCCcceEEEccC--CCcEEEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011971 298 KWSY-DNRELASGGND------NRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTT 366 (474)
Q Consensus 298 ~~sp-d~~~lasg~~D------g~v~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~ll~sg~--Gt~d~~I~iwd~~ 366 (474)
.|+| +++.|+..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+++.|++... +..++.|.+||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999 78877776653 46899998765533 33333 235888999999998776643 1112459999999
Q ss_pred CCceeeeecCCCCeEEEEEcC-CCCeEEEEEe--------------cCCCeEEEEECCCCceeEEEcCCCc---------
Q 011971 367 TNTHLSCMDTGSQVCNLVWSK-NVNELVSTHG--------------YSQNQIIVWRYPTMSKLATLTGHTF--------- 422 (474)
Q Consensus 367 ~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g--------------~~dg~I~iwd~~~~~~~~~l~~h~~--------- 422 (474)
+++........ ... +.|++ +++.+++... ..+..|++||+.+++.. .+..+..
T Consensus 273 ~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 273 TLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDR 349 (396)
T ss_dssp TCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBS
T ss_pred CCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccc
Confidence 88765433322 233 89999 9998776321 13478999999877643 3444443
Q ss_pred --cEEEEEECCCCCEEEEEeC-CCcEEEEeCC
Q 011971 423 --RVLYLAISPDGQTIVTGAG-DETLRFWNVF 451 (474)
Q Consensus 423 --~V~~l~~spdg~~l~t~s~-Dg~I~iW~l~ 451 (474)
.+..++|+|||+.|+.++. ++...+|.+.
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567899999998887664 5665666554
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=186.96 Aligned_cols=281 Identities=10% Similarity=0.082 Sum_probs=194.6
Q ss_pred ceeeeeCCC-CcEEEEEc----------CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 011971 169 YLNLVDWSS-HNVLAVGL----------GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~----------d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~ 237 (474)
.+..++||| ++.|+.+. ++.|++||+.+++......+ ...+.+++|||||++||++. ++.|++||+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 377899999 66666554 47999999999876211112 35688999999999999986 789999999
Q ss_pred CCCeEEEEe-cCCCCcE-----------------EEEEecC--CEEEEEeCCC---------------------------
Q 011971 238 SRCKRVRTM-EGHRLRV-----------------GALAWSS--SLLSSGSRDK--------------------------- 270 (474)
Q Consensus 238 ~~~~~~~~~-~~h~~~V-----------------~~l~~~~--~~l~sgs~dg--------------------------- 270 (474)
.+++..... .++...| .+++|++ +.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 888765433 2333323 4899985 6888877552
Q ss_pred -------cEEEEECcCCcce--E-----eeecCcCCCEEEEEEecCCCEEEEEeCC----CcEEEEE----CCCCcceEE
Q 011971 271 -------SILQRDIRAQEDF--V-----SKLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWN----QHSTQPVLK 328 (474)
Q Consensus 271 -------~I~iwd~~~~~~~--~-----~~~~~h~~~V~~l~~spd~~~lasg~~D----g~v~iwd----~~~~~~~~~ 328 (474)
.|.+||+.++... + ..+.+|...+..++|+||++++++.... ..|.+|| +.+++....
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999876521 1 1234688889999999998777765433 2488999 777765443
Q ss_pred E----ccCCCcEE-----EEEECCCCCcEEEE-ecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec
Q 011971 329 Y----CEHTAAVK-----AIAWSPHLHGLLAS-GGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 329 ~----~~h~~~V~-----~l~~sp~~~~ll~s-g~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 398 (474)
+ ..|...+. .++|+|+|..+++. ........|.+||+.+++..........+..+.++ +++.++.+ +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~-~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS-SN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE-ES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE-Ee
Confidence 3 35666666 88999999977663 32112346888888877743333344567787777 88888875 33
Q ss_pred C----CCeEEEEECCC--Cc-eeEEEc----CCCccEEEEEECCCCCEEEE-EeCC--CcEEEEeCCCCC
Q 011971 399 S----QNQIIVWRYPT--MS-KLATLT----GHTFRVLYLAISPDGQTIVT-GAGD--ETLRFWNVFPSP 454 (474)
Q Consensus 399 ~----dg~I~iwd~~~--~~-~~~~l~----~h~~~V~~l~~spdg~~l~t-~s~D--g~I~iW~l~~~~ 454 (474)
. ++.+.+|.+.. +. ....+. +|...+..+.|+|||++|+. ++.+ ..+++|++.++.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 3 57888888753 32 233343 26677889999999987774 4433 468899887654
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4e-16 Score=148.56 Aligned_cols=236 Identities=14% Similarity=0.189 Sum_probs=177.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec------CCCCcEEEEEec--CCEEEEEeC--CCcEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME------GHRLRVGALAWS--SSLLSSGSR--DKSILQR 275 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~------~h~~~V~~l~~~--~~~l~sgs~--dg~I~iw 275 (474)
++-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+..+++. ...|+.+.. ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344678999999999988888889999999987 66666664 244678899993 345555553 8899999
Q ss_pred ECcCCcceEeeec-CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEe
Q 011971 276 DIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 276 d~~~~~~~~~~~~-~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg 352 (474)
|. .+. .+..+. .+...+.+++++++++++++...++.|++||.. ++.+..+. .+...+.++++++++. ++++.
T Consensus 106 d~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~ 181 (286)
T 1q7f_A 106 NQ-YGQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISD 181 (286)
T ss_dssp CT-TSC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEE
T ss_pred CC-CCc-EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEE
Confidence 94 333 344442 345678999999999988888888999999964 55555553 3455789999999987 66665
Q ss_pred cCCCCCeEEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceeEEEcCCCc--cEEE
Q 011971 353 GGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHGYSQN-QIIVWRYPTMSKLATLTGHTF--RVLY 426 (474)
Q Consensus 353 ~Gt~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~~--~V~~ 426 (474)
. .++.|++||. .++.+..+... ..+..++++++|+.+++ ...++ .|.+|+. +++.+..+..+.. .+..
T Consensus 182 ~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 182 N--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp G--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred C--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 4 5889999997 45566666433 56899999999987776 54565 9999994 5677777765433 4789
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 427 LAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 427 l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
++++|+|+++++ +.|++|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999987776 67999999998654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.1e-17 Score=176.96 Aligned_cols=266 Identities=14% Similarity=0.150 Sum_probs=183.0
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCC---------CcEEE
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-----SVCSVGWANRNTHLAVGTSH---------GKVQI 234 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~-----~V~~v~~sp~g~~la~gs~d---------g~I~i 234 (474)
...+.|++ +.+++.+ ++.|++||+.+++...++. +|.. ....+.|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 34689998 5666666 9999999999999877765 3332 22458999999999998875 66779
Q ss_pred ecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE-----------------E
Q 011971 235 WDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----------------C 295 (474)
Q Consensus 235 wd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~ 295 (474)
||+.+++.. .+..|...+...+|+| +.|+.+ .++.|++||+.++.....+..++...+ .
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 999998754 4677888999999995 677776 468999999987763333333443333 3
Q ss_pred EEEEecCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--ceEEEcc---
Q 011971 296 GLKWSYDNRELASGGNDN------------------------------------RLFVWNQHS---TQ--PVLKYCE--- 331 (474)
Q Consensus 296 ~l~~spd~~~lasg~~Dg------------------------------------~v~iwd~~~---~~--~~~~~~~--- 331 (474)
++.|||||+.||.++.|. .|++||+.+ ++ ....+..
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 589999999999875322 588999988 73 2334432
Q ss_pred ---CCCcEEEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc----eee--e---ecCCCCe-----EEEEEcCCCCeEE
Q 011971 332 ---HTAAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNT----HLS--C---MDTGSQV-----CNLVWSKNVNELV 393 (474)
Q Consensus 332 ---h~~~V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~~----~~~--~---~~~~~~v-----~~l~~s~~~~~l~ 393 (474)
|...+..++|+|+++.++.... +..+..|.+||+.+++ +.. . ..+...+ ....|+|||+.++
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence 7788999999999985444322 1234579999999887 221 1 1233333 3788999999887
Q ss_pred EEEecCC--CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 394 STHGYSQ--NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 394 ~~~g~~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
......+ ..|++|+...++.. .+......|..+.. +|++.|+..+.
T Consensus 335 ~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 335 KIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp EEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred EEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 3223333 47888888766544 44444555666542 34666554433
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=8.8e-18 Score=182.18 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=175.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCc-----EEEEEecC--CEEEEEeCC---------CcE
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-----VGALAWSS--SLLSSGSRD---------KSI 272 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~-----V~~l~~~~--~~l~sgs~d---------g~I 272 (474)
....++.|+|+|.+|+++ ||.|.+||+.+++....+.+|... ...++|++ +.|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999988888877643 23467774 688888776 567
Q ss_pred EEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE-ccCCCcE---------------
Q 011971 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY-CEHTAAV--------------- 336 (474)
Q Consensus 273 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~-~~h~~~V--------------- 336 (474)
.+||+.+++ ...+..|...+...+|||||+.||.+. |+.|++||+.+++..... .++...+
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 799999876 445677888899999999999999985 689999999887654321 1222222
Q ss_pred --EEEEECCCCCcEEEEec-------------------------------CCC--CCeEEEEECCC---Cc--eeeeec-
Q 011971 337 --KAIAWSPHLHGLLASGG-------------------------------GTA--DRCIRFWNTTT---NT--HLSCMD- 375 (474)
Q Consensus 337 --~~l~~sp~~~~ll~sg~-------------------------------Gt~--d~~I~iwd~~~---~~--~~~~~~- 375 (474)
.++.|+|||+.|+.... |.. ...|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 35899999997766531 000 12588999998 73 222232
Q ss_pred ------CCCCeEEEEEcCCCCeEEEEEecC--CCeEEEEECCCCc----e--eEEE--cCCCccEE-----EEEECCCCC
Q 011971 376 ------TGSQVCNLVWSKNVNELVSTHGYS--QNQIIVWRYPTMS----K--LATL--TGHTFRVL-----YLAISPDGQ 434 (474)
Q Consensus 376 ------~~~~v~~l~~s~~~~~l~~~~g~~--dg~I~iwd~~~~~----~--~~~l--~~h~~~V~-----~l~~spdg~ 434 (474)
+...+..+.|+|||+.++...... +..|.+||+.+++ + +..+ .+|...|. ..+|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 344588999999999776643322 3479999998876 1 1222 45665554 789999999
Q ss_pred EEE-EEeC-C--CcEEEEeCCCCCCCCCC
Q 011971 435 TIV-TGAG-D--ETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 435 ~l~-t~s~-D--g~I~iW~l~~~~~~~~~ 459 (474)
.|+ ..+. + ..|++|++..+...+..
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 877 6653 3 45888888876654433
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1e-16 Score=159.18 Aligned_cols=262 Identities=12% Similarity=0.049 Sum_probs=181.0
Q ss_pred EEeCCCCCEEEEEecCCCCCEEE-----EEEcCCCCEEEEEeC-CC--cEEEecCCCCeEEEEecCCCCcEEEEEec--C
Q 011971 191 LWNACSSKVTKLCDLGIDDSVCS-----VGWANRNTHLAVGTS-HG--KVQIWDASRCKRVRTMEGHRLRVGALAWS--S 260 (474)
Q Consensus 191 lwd~~~~~~~~~~~~~~~~~V~~-----v~~sp~g~~la~gs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~ 260 (474)
.++..++.....+. .+...+.. .+|+|||++|+.++. +| .|.+||+.+++......++...+..+.|+ +
T Consensus 14 ~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 35667776665553 44545555 889999999999887 66 48888999988877777776666567787 4
Q ss_pred CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEE--EecCCCEEEEE----------------------eCCCcEE
Q 011971 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK--WSYDNRELASG----------------------GNDNRLF 316 (474)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~--~spd~~~lasg----------------------~~Dg~v~ 316 (474)
+.|+.++.++.|++||+.+++. ......+...+.... +++++++++.. ..++.|+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 7899999999999999998763 333444555454444 48999988743 2447899
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECC-CCCcEEEEecCCC---CCeEEEEECCCCceeeeecCC--CCeEEEEEcCCCC
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVN 390 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~ll~sg~Gt~---d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~ 390 (474)
+||+.+++.. .+..+...+..++|+| ++..++.+..+.. ...|.++|+..+......... ..+..+.|+|+|+
T Consensus 172 ~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 172 RVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred EEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 9999988654 4446677899999999 9887766653211 347888898766544433333 2477889999999
Q ss_pred eEEEEEecCCC---eEEEEECCCCce--eEEEcCCCcc---EEEEEECCCCCEEEEE---------eCCCcEEEEeCCCC
Q 011971 391 ELVSTHGYSQN---QIIVWRYPTMSK--LATLTGHTFR---VLYLAISPDGQTIVTG---------AGDETLRFWNVFPS 453 (474)
Q Consensus 391 ~l~~~~g~~dg---~I~iwd~~~~~~--~~~l~~h~~~---V~~l~~spdg~~l~t~---------s~Dg~I~iW~l~~~ 453 (474)
.|+.+.....+ .|++||+.+++. +..+.++... ...++|+|||+.|+.. ..+..|++||+..+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 88765332222 399999998874 3334331111 1123799999988754 55678999999876
Q ss_pred CC
Q 011971 454 PK 455 (474)
Q Consensus 454 ~~ 455 (474)
..
T Consensus 331 ~~ 332 (388)
T 3pe7_A 331 TQ 332 (388)
T ss_dssp EE
T ss_pred ce
Confidence 53
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=1.8e-16 Score=169.37 Aligned_cols=276 Identities=11% Similarity=-0.025 Sum_probs=188.9
Q ss_pred cceeeeeCCCCcEEEEEc----CCeEEEEeCC-CCCEEEEEecCCCCCEE---------EEEEc--CCCCE-EEEEeC-C
Q 011971 168 FYLNLVDWSSHNVLAVGL----GNCVYLWNAC-SSKVTKLCDLGIDDSVC---------SVGWA--NRNTH-LAVGTS-H 229 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~----d~~V~lwd~~-~~~~~~~~~~~~~~~V~---------~v~~s--p~g~~-la~gs~-d 229 (474)
..+..+.|+++.++.+.. ++...||... .++...+. .+...+. ...|+ |||++ |+.++. +
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 357888888876665554 6788889854 44443332 4445555 56666 99998 776654 5
Q ss_pred CcEEEecCC--CCeEEEEecC-----CCCcEEEEEecC--CEEEEEeCC----------CcEEEEECcC------CcceE
Q 011971 230 GKVQIWDAS--RCKRVRTMEG-----HRLRVGALAWSS--SLLSSGSRD----------KSILQRDIRA------QEDFV 284 (474)
Q Consensus 230 g~I~iwd~~--~~~~~~~~~~-----h~~~V~~l~~~~--~~l~sgs~d----------g~I~iwd~~~------~~~~~ 284 (474)
..|.+|++. .......+.. |...+..++|++ +.|++++.+ ..|++||+.+ +. .
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~ 179 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--V 179 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--S
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--e
Confidence 567777765 2034455655 677899999984 688888776 5899999987 43 3
Q ss_pred eeec-CcCCCEEEEEEecCCCEEEEEeCC--------CcEEEEECC-CC---cceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 285 SKLS-GHKSEVCGLKWSYDNRELASGGND--------NRLFVWNQH-ST---QPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 285 ~~~~-~h~~~V~~l~~spd~~~lasg~~D--------g~v~iwd~~-~~---~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......|...+..++|+|+|+ ++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~ 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVA 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEE
Confidence 4455 566778889999999999988755 379999998 56 44433445678899999999999 7776
Q ss_pred ecCCCCC--eEEEEECCCCceeeeecCCCC---------eEEEEEcCCCCeEEEEEecCCCeEEEE--ECCCCceeEEEc
Q 011971 352 GGGTADR--CIRFWNTTTNTHLSCMDTGSQ---------VCNLVWSKNVNELVSTHGYSQNQIIVW--RYPTMSKLATLT 418 (474)
Q Consensus 352 g~Gt~d~--~I~iwd~~~~~~~~~~~~~~~---------v~~l~~s~~~~~l~~~~g~~dg~I~iw--d~~~~~~~~~l~ 418 (474)
+. .++ .|.+||+.+++.......... +..++|+++++.+++ +.. +.++|| |...++ +..+.
T Consensus 259 ~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 259 TD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEEETTTTE-EEECC
T ss_pred EC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEEECCCCc-EEEec
Confidence 64 566 677788777765544433221 457889999998887 556 888888 554444 67788
Q ss_pred CCCccEEEE-EECCCCCEEEEEeCCCc--EEEEeCCCCC
Q 011971 419 GHTFRVLYL-AISPDGQTIVTGAGDET--LRFWNVFPSP 454 (474)
Q Consensus 419 ~h~~~V~~l-~~spdg~~l~t~s~Dg~--I~iW~l~~~~ 454 (474)
.|...+..+ +++.+.-++++++.+.. |++|++.++.
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 888778777 55443334445555554 4455555554
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=5.2e-16 Score=153.71 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=187.2
Q ss_pred eeeCCC-CcEEEEEc-----------CCeEEEEeCCCCCEEEEEecC-----CCCCEEEEEEcCCCCEEEEEeC--CCcE
Q 011971 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLG-----IDDSVCSVGWANRNTHLAVGTS--HGKV 232 (474)
Q Consensus 172 ~l~~s~-~~~la~~~-----------d~~V~lwd~~~~~~~~~~~~~-----~~~~V~~v~~sp~g~~la~gs~--dg~I 232 (474)
.+.+++ ++.+.++. ++.|.+||..+.+....+.+. +......++++|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 788888 55555553 467999999999988877653 2345778999999999999874 5789
Q ss_pred EEecCCCCeEEEE-ecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEe------eecCcCCCEEEEEEecC
Q 011971 233 QIWDASRCKRVRT-MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVS------KLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 233 ~iwd~~~~~~~~~-~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~------~~~~h~~~V~~l~~spd 302 (474)
.+||+.+++.+.. +.. ... ..+.+. +..+++.+.||.+.+|++........ .+..+...+ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC-CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998887 553 222 223333 25788999999999999865332321 122222222 3344677
Q ss_pred CCEEEEEeCCCcEEEEECCCCcce--EEEccC----------CCcEEEEEECCCCCcEEEEec--CC------CCCeEEE
Q 011971 303 NRELASGGNDNRLFVWNQHSTQPV--LKYCEH----------TAAVKAIAWSPHLHGLLASGG--GT------ADRCIRF 362 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~~~--~~~~~h----------~~~V~~l~~sp~~~~ll~sg~--Gt------~d~~I~i 362 (474)
+..++..+.++.|+++|+...... ..+... ......++++|+++.++++.. |. ..+.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 888888889999999998755422 221110 011123789999888887652 10 1358999
Q ss_pred EECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceeEEEcCCCccEEEEEECCCCC
Q 011971 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM--SKLATLTGHTFRVLYLAISPDGQ 434 (474)
Q Consensus 363 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 434 (474)
||+.+++.+..+..+. +..++|+|+|++|+++ .. +.|.+||..++ +.+..+..+......++++|||.
T Consensus 291 iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~--n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL--DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTTTEEEEEEECTT-CCEEEEETTTTEEEEE--CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcEEEEEecCC-eeEEEECCCCCEEEEe--CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999999998877 9999999999999884 34 99999999999 99999877777788999999986
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1.2e-15 Score=149.31 Aligned_cols=238 Identities=9% Similarity=0.135 Sum_probs=165.7
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---C--cEEEecCCCCeEEEEecCCCCcEEEEEecC
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---G--KVQIWDASRCKRVRTMEGHRLRVGALAWSS 260 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g--~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~ 260 (474)
++.|++|++.+++...+ ..+.+++|+|||++||.++.+ + .|.+||+.+++.......+ . +..++|++
T Consensus 42 ~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT
T ss_pred cceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC
Confidence 45899999999886544 468899999999999987754 3 3788888887766555433 3 99999984
Q ss_pred --CEEEEEeC---------------------------CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 261 --SLLSSGSR---------------------------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 261 --~~l~sgs~---------------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
+.|+.++. ...|.+||+.+++. +..+.. . .+..+.|+||| +++++..
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEEec
Confidence 56776653 25789999987652 133333 3 78899999999 7777765
Q ss_pred CC---------cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeecC-
Q 011971 312 DN---------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT-----ADRCIRFWNTTTNTHLSCMDT- 376 (474)
Q Consensus 312 Dg---------~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt-----~d~~I~iwd~~~~~~~~~~~~- 376 (474)
++ .|+++| +++ ...+..+ ..+..+ +|+|+.+++.+... ....|.+|| +++.......
T Consensus 190 ~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp CCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 42 355555 444 3444444 555544 99999887766311 134788888 5554443333
Q ss_pred CCCeEE-EEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE-EEEeCC
Q 011971 377 GSQVCN-LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL-RFWNVF 451 (474)
Q Consensus 377 ~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I-~iW~l~ 451 (474)
...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+++|+| .++++++.++.. .+|.+.
T Consensus 262 ~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 455775 8999 87 5555 6688899999 876654 44445678899999999 677788777765 788776
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=1.7e-15 Score=147.49 Aligned_cols=262 Identities=8% Similarity=0.018 Sum_probs=183.7
Q ss_pred eeeeeCCCC--cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSSH--NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~~--~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
++.+.|+++ .++.++.++.+..|. ++....+. .+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 566777762 333345677888882 33333332 455678999999999988888889999999998887665554
Q ss_pred CCCCcEEEEEecC--CEEEEEeCC----CcEEEEECcCCcceEeee--cCcCCCEEEEEEecCCCEEEEEeC------CC
Q 011971 248 GHRLRVGALAWSS--SLLSSGSRD----KSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGN------DN 313 (474)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~d----g~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spd~~~lasg~~------Dg 313 (474)
.+...+.+++|++ .++++...+ +.|.+||..+... ...+ ..+...+.+++++|+|+++++... .+
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 5677899999974 566665555 6899999887652 2122 234467999999999988777654 35
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeee--------ecCCCCeEEEE
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSC--------MDTGSQVCNLV 384 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~--------~~~~~~v~~l~ 384 (474)
.|..+|..+++.. .+..+...+..++|+|++..++++.. .++.|.+||+.+ +..+.. +.....+..++
T Consensus 163 ~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred eEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 6777776655433 23233446789999999987777654 578999999864 333221 11123578899
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc------cEEEEEECCCCCEEEEEeCC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF------RVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~spdg~~l~t~s~D 442 (474)
++++|+.+++ ...++.|.+||. .++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 240 ~d~~G~l~v~--~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVA--MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEE--EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEE--EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999987776 446789999998 5677777654433 68999999998777665554
No 172
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=9.6e-17 Score=156.49 Aligned_cols=224 Identities=11% Similarity=0.034 Sum_probs=159.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC-CcEEEEEecC--CE-EEEEeCCCcEEEEECcCCcceEeeec
Q 011971 213 SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-LRVGALAWSS--SL-LSSGSRDKSILQRDIRAQEDFVSKLS 288 (474)
Q Consensus 213 ~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~--~~-l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (474)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|++ +. ++++..++.|.+||+.+.+. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678888899999999999999999999888887543 2567888874 44 45666789999999987763 33333
Q ss_pred -Cc-----CCCEEEEEEecCCCEEEEEeCC------------CcEEEEECCCCcc---eEEEccCCCcEEEEEECCCCCc
Q 011971 289 -GH-----KSEVCGLKWSYDNRELASGGND------------NRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 289 -~h-----~~~V~~l~~spd~~~lasg~~D------------g~v~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
.+ ...+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 22 2337889999999999998865 8999999988543 33443 344688999999998
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCC-------------------------CeEEEEEcCCCCeE---------E
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGS-------------------------QVCNLVWSKNVNEL---------V 393 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-------------------------~v~~l~~s~~~~~l---------~ 393 (474)
+++.+ +.|.+||+.+++.+..+.... ....+++++++... +
T Consensus 161 l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 161 LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 76642 339999999998887765443 34456666554211 1
Q ss_pred EEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.......+.+.+|++ ..+...+..++|+| ||++|+++ ++.|++||+.++..
T Consensus 236 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred EEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 111333444554443 23566788999999 99999988 88999999987654
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=3.7e-16 Score=154.70 Aligned_cols=241 Identities=9% Similarity=0.014 Sum_probs=166.0
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCC-CCCEEEEEecCCCCCEEEEEEcCCCCE--EEEEe-------------CCCc
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTH--LAVGT-------------SHGK 231 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~--la~gs-------------~dg~ 231 (474)
....++|++ +++|+++..+.|.+|++. +++...+......+.+.+++|+|+|++ ++++. .+|.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 356788998 565555544499999997 777655443211234667899999994 44543 6899
Q ss_pred EEEecCC-CCeEEEEec----CCCCcEEEEEecC--CEEEEEe-CCCcEEEEECc-CCcce-Eeeec--CcCCCEEEEEE
Q 011971 232 VQIWDAS-RCKRVRTME----GHRLRVGALAWSS--SLLSSGS-RDKSILQRDIR-AQEDF-VSKLS--GHKSEVCGLKW 299 (474)
Q Consensus 232 I~iwd~~-~~~~~~~~~----~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~-~~~~~-~~~~~--~h~~~V~~l~~ 299 (474)
+.+|++. +++....+. .+...+.+++|++ ++|+++. .++.|.+||+. +++.. +..+. .|...+..++|
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence 9999997 465544443 3567899999985 5677665 46899999998 55421 22232 24567999999
Q ss_pred ecCCCEEEEEeC-CCcEEEEECC--CCcce---EEEcc-------CCC------cEEEEE-ECCCCCcEEEEecCCCC--
Q 011971 300 SYDNRELASGGN-DNRLFVWNQH--STQPV---LKYCE-------HTA------AVKAIA-WSPHLHGLLASGGGTAD-- 357 (474)
Q Consensus 300 spd~~~lasg~~-Dg~v~iwd~~--~~~~~---~~~~~-------h~~------~V~~l~-~sp~~~~ll~sg~Gt~d-- 357 (474)
+|||++|++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|+|+.|+++..+ .+
T Consensus 201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~~ 279 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKFE 279 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SSTT
T ss_pred CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCCC
Confidence 999999888775 6899999865 45432 12221 122 588999 99999988766532 22
Q ss_pred --CeEEEEECC-CCceee---eec-CCCCeEEEEEcC---CCCeEEEEEecCCCeEEEEECCCC
Q 011971 358 --RCIRFWNTT-TNTHLS---CMD-TGSQVCNLVWSK---NVNELVSTHGYSQNQIIVWRYPTM 411 (474)
Q Consensus 358 --~~I~iwd~~-~~~~~~---~~~-~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~~~~ 411 (474)
+.|.+|++. +++... .+. ....+..++|+| +|++|+++ +..++.|.+|++...
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEchh
Confidence 289999986 566543 232 344577889999 89999884 334689999998654
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=6.4e-16 Score=153.02 Aligned_cols=255 Identities=11% Similarity=0.072 Sum_probs=182.6
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEecCCCCeEEEEecCC------
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGKVQIWDASRCKRVRTMEGH------ 249 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~----------dg~I~iwd~~~~~~~~~~~~h------ 249 (474)
++.|++||..++++...+..+ ..+ .++|+|||++|+++.. ++.|.+||..+.+.+..+...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred cCeEEEEECCCCeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 679999999999988777643 233 8999999999999863 567999999999888877532
Q ss_pred CCcEEEEEec--CCEEEEEeC--CCcEEEEECcCCcceEee-ecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCC-
Q 011971 250 RLRVGALAWS--SSLLSSGSR--DKSILQRDIRAQEDFVSK-LSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHS- 322 (474)
Q Consensus 250 ~~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~- 322 (474)
......++++ +++|+++.. ++.|.+||+.+.+ .+.. +. +. ....+.+.|++ ..+++.+.||.+.+|++..
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 2345667886 577887764 6899999999876 3444 32 22 23345677765 6788889999999999865
Q ss_pred CcceEEE------ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeEEE
Q 011971 323 TQPVLKY------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMDT-----------GSQVCNL 383 (474)
Q Consensus 323 ~~~~~~~------~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l 383 (474)
++..... ..+..++ .+.+.+++..++... .++.|.++|+..+... ..+.. ......+
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CcEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 4433111 1122221 233356666555544 5789999998765422 22111 0112237
Q ss_pred EEcCCCCeEEEEEe-c--------CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 384 VWSKNVNELVSTHG-Y--------SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 384 ~~s~~~~~l~~~~g-~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+|+++++.++++.. . ..+.|.+||..+++.+..+..+. +..++|+|||++|++++. ++|.+||..++
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 89999999888532 1 14589999999999999998877 899999999999998886 99999999887
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3.9e-15 Score=160.62 Aligned_cols=263 Identities=8% Similarity=0.041 Sum_probs=183.8
Q ss_pred eEEEEeCCCCCEEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEecCCCCeEEEEecCCCCcEEEEE
Q 011971 188 CVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~gs~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~ 257 (474)
.+++.+..+++...+++. ++...+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 344444444444333321 2334688999999999999876643 8999999999877643222 2366789
Q ss_pred ecC--CEEEEEeCCCc----------------EEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEEEEEeC-----
Q 011971 258 WSS--SLLSSGSRDKS----------------ILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGN----- 311 (474)
Q Consensus 258 ~~~--~~l~sgs~dg~----------------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~lasg~~----- 311 (474)
|++ +.|+.++.++. |++|++.++.. .+.....|...+.++.|+|||++|+.++.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 984 68888887766 99999987652 22233335666889999999999988765
Q ss_pred CCcEEEEECCC------Cc-ceEEEccCCCcEEEEEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCC--
Q 011971 312 DNRLFVWNQHS------TQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTNTH---LSCMDTGS-- 378 (474)
Q Consensus 312 Dg~v~iwd~~~------~~-~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G-t~d~~I~iwd~~~~~~---~~~~~~~~-- 378 (474)
+..|++||+.+ +. ....+..+...+.. .|+|+|..+++.+.. .....|.+||+.++.. ...+.+..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 67899999986 43 45666666666655 488999888777641 1245799999988742 22233323
Q ss_pred CeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE-e---CCCcEEEEeCCC
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG-A---GDETLRFWNVFP 452 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~-s---~Dg~I~iW~l~~ 452 (474)
.+..+.|++++..+++ ...++ .|.+|++.+++.+..+..+.+.|..++++|++..|+.. + ..++|+.||+.+
T Consensus 337 ~~~~~~~~~~~~lv~~--~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLC--YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEEETTTEEEEE--EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred eEEEEEEEcCCEEEEE--EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 5778999866655555 44566 56777877788888888888889999999998766533 2 347899999987
Q ss_pred CC
Q 011971 453 SP 454 (474)
Q Consensus 453 ~~ 454 (474)
+.
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=4.8e-13 Score=127.25 Aligned_cols=273 Identities=8% Similarity=-0.076 Sum_probs=190.5
Q ss_pred cceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
..+.++.+++ ++++++.. ++.|.+||.. ++............+.++++.++|.++++...++.|..||.........
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 93 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT 93 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEe
Confidence 3477888887 66666665 6799999998 6665443223457899999999998777776688899999863222222
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+......+..+++++ .++++...++.|.+||. ++.........+...+.++++.++++.+++...++.|.+||. ++
T Consensus 94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 233456788999973 56666667889999998 443222223334567899999999988887777889999998 66
Q ss_pred cceEE-EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-ec-CCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 324 QPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 324 ~~~~~-~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
+.... +..+...+.++++++++. ++++.. .++.|..||. +++.... .. ....+..++++++|+.+++ ...+
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~ 245 (299)
T 2z2n_A 172 DITEFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT--EWGA 245 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETTT
T ss_pred cEEEeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe--ccCC
Confidence 54432 333456788999999977 666543 4788999999 6664332 11 2357899999999986555 4567
Q ss_pred CeEEEEECCCCceeEEE--cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 401 NQIIVWRYPTMSKLATL--TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.|.+||. +++ +..+ ..+...+.++++ ++|.+.++.. .+.|..++....
T Consensus 246 ~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 246 NKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 89999998 443 3333 345567999999 8888766654 566777776543
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=3.6e-14 Score=138.40 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=176.3
Q ss_pred eeeeeCCC-CcEEEEEcCC-------------------------eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEE
Q 011971 170 LNLVDWSS-HNVLAVGLGN-------------------------CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL 223 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~-------------------------~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l 223 (474)
+..+++++ ++++++..++ .|++||..++++......++-..+..|+++++|+++
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~ 105 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW 105 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence 78888988 6777776654 699999999998776643445689999999999988
Q ss_pred EEEeCCCcEEEecCCCCe-EEEEe---------cCCCCcEEEEEecC---CEEEEEe-CCCcEEEEECcCCcceEeeecC
Q 011971 224 AVGTSHGKVQIWDASRCK-RVRTM---------EGHRLRVGALAWSS---SLLSSGS-RDKSILQRDIRAQEDFVSKLSG 289 (474)
Q Consensus 224 a~gs~dg~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~~~---~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~ 289 (474)
++...++.|++||..... .+..+ .++-.....+++++ .++++.+ .++.|.+||.. +. .+..+..
T Consensus 106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~~ 183 (329)
T 3fvz_A 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWGE 183 (329)
T ss_dssp EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEECE
T ss_pred EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEecc
Confidence 888889999999986542 45555 34455789999974 4666665 68999999943 33 3444432
Q ss_pred ----------cCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEec---
Q 011971 290 ----------HKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGG--- 353 (474)
Q Consensus 290 ----------h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~--- 353 (474)
+-..+.+|+++|+ +.++++...++.|++||..+++.+..+. .+...+.+++++| + .++.+.+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~ 261 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G-FLFAVNGKPY 261 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-EEEEEECCCC
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-EEEEeCCCEE
Confidence 2344899999998 7777787888999999999888888774 4567789999999 3 2333332
Q ss_pred --CCCCCeEEEEECCCCceeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 354 --GTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 354 --Gt~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
...+..|++||..+++.+..+. ....+..++++++|..+++ ...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCC
Confidence 1234589999999999988874 3456899999999955555 6678899999974
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.3e-15 Score=162.60 Aligned_cols=241 Identities=9% Similarity=-0.032 Sum_probs=170.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEE--eCCCcEEEecCCCCeEEEEecCCCCcEE---------EEEec----CCE-EEEEeC-
Q 011971 206 GIDDSVCSVGWANRNTHLAVG--TSHGKVQIWDASRCKRVRTMEGHRLRVG---------ALAWS----SSL-LSSGSR- 268 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g--s~dg~I~iwd~~~~~~~~~~~~h~~~V~---------~l~~~----~~~-l~sgs~- 268 (474)
+|...+..++|++++-+++.. ..++...||....+.....+..|...+. ...|+ ++. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 577889999999876666666 4578899998655556677777766655 55555 455 555443
Q ss_pred CCcEEEEECc--C-CcceEeeecC-----cCCCEEEEEEecCCCEEEEEeCC----------CcEEEEECCCC-----cc
Q 011971 269 DKSILQRDIR--A-QEDFVSKLSG-----HKSEVCGLKWSYDNRELASGGND----------NRLFVWNQHST-----QP 325 (474)
Q Consensus 269 dg~I~iwd~~--~-~~~~~~~~~~-----h~~~V~~l~~spd~~~lasg~~D----------g~v~iwd~~~~-----~~ 325 (474)
+..|.++++. . +. ...+.. |...+.+++|+|||+.|++++.+ ..|++||+.+. ..
T Consensus 101 ~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp TCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 5677777775 2 32 334444 66788999999999999998877 58999999872 33
Q ss_pred eEEEc-cCCCcEEEEEECCCCCcEEEEecCC-----CCCeEEEEECC-CC---ceeeeecC-CCCeEEEEEcCCCCeEEE
Q 011971 326 VLKYC-EHTAAVKAIAWSPHLHGLLASGGGT-----ADRCIRFWNTT-TN---THLSCMDT-GSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 326 ~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt-----~d~~I~iwd~~-~~---~~~~~~~~-~~~v~~l~~s~~~~~l~~ 394 (474)
...+. .+...+..++|+|||+.|+.+.... ....|.+||+. ++ +....... ...+..+.|+|+|+.+++
T Consensus 179 ~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence 45665 6667888999999999877665310 11479999998 56 33333333 577999999999995544
Q ss_pred EEecCCC--eEEEEECCCCceeEEEcCCCcc--------EEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 395 THGYSQN--QIIVWRYPTMSKLATLTGHTFR--------VLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 395 ~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+..++ .|.+||..+++.......+... +..++|+|++++++++.. +.+++|.+.
T Consensus 259 --~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 259 --TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp --ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred --ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 55667 6777776666554333333222 567899999999999998 999999554
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=7.3e-16 Score=153.08 Aligned_cols=260 Identities=11% Similarity=0.028 Sum_probs=173.0
Q ss_pred EEEeCCCCCEEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEec--
Q 011971 190 YLWNACSSKVTKLCDLGIDD-----SVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWS-- 259 (474)
Q Consensus 190 ~lwd~~~~~~~~~~~~~~~~-----~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-- 259 (474)
..+|..+++....+. .+.. .+.+++|+|+|++|+..... ..|.+||+.+++......++......+.|+
T Consensus 13 ~~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 345777877655543 2222 36788999999998877553 368888998887654433333223336787
Q ss_pred CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEE-------------------EEEecCCCEEEEE-----eCCCcE
Q 011971 260 SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG-------------------LKWSYDNRELASG-----GNDNRL 315 (474)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~spd~~~lasg-----~~Dg~v 315 (474)
++.|+.++.++.|++||+.++.. ......+...... +.|+|+++.++.+ ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 47898999999999999987652 3333323332222 3456777766654 456789
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECC-CCCcEEEEecCCCC----CeEEEEECCCCceeeeecC--CCCeEEEEEcCC
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTAD----RCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKN 388 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~ll~sg~Gt~d----~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~ 388 (474)
++||+.+++..... .+...+..+.|+| ++..++++..+ .. ..|.+||+..++....... ...+..+.|+|+
T Consensus 171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 99999988755444 5677899999999 77766665432 22 5799999877654433332 224778999999
Q ss_pred CCeEEEEEec-CC--CeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEe----------------CCCcEEEE
Q 011971 389 VNELVSTHGY-SQ--NQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGA----------------GDETLRFW 448 (474)
Q Consensus 389 ~~~l~~~~g~-~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s----------------~Dg~I~iW 448 (474)
|+.|+.+... .. +.|++||+.+++....... .. .. ++|+| ||++|++++ .++.|++|
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 9988775321 12 4499999988765433221 11 23 89999 999888765 34789999
Q ss_pred eCCCCCCC
Q 011971 449 NVFPSPKS 456 (474)
Q Consensus 449 ~l~~~~~~ 456 (474)
|+..+...
T Consensus 326 d~~~~~~~ 333 (396)
T 3c5m_A 326 NTKAKSAQ 333 (396)
T ss_dssp ETTTTBCC
T ss_pred ecccCceE
Confidence 99876543
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=8.1e-14 Score=132.50 Aligned_cols=232 Identities=9% Similarity=0.114 Sum_probs=166.9
Q ss_pred ceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEec-----CCCCCEEEEEEc-CCCCEEEEEeC-CCcEEEecCCC
Q 011971 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-----GIDDSVCSVGWA-NRNTHLAVGTS-HGKVQIWDASR 239 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~-----~~~~~V~~v~~s-p~g~~la~gs~-dg~I~iwd~~~ 239 (474)
....+++++ ++++++. .++.|++||.. ++....+.. ++...+.++++. +++.++++... ++.|.+|| .+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 367788887 5666665 46899999987 555444421 233578999994 67766655543 78999999 56
Q ss_pred CeEEEEec-CCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeec--CcCCCEEEEEEecCCCEEEEEeCCCc
Q 011971 240 CKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNR 314 (474)
Q Consensus 240 ~~~~~~~~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spd~~~lasg~~Dg~ 314 (474)
++.+..+. .+...+..++++ ++++++...++.|.+||.... .+..+. .+...+.+|+++++++++++...++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 77777664 345678999997 467777777899999996532 333332 45567899999999998888888999
Q ss_pred EEEEECCCCcceEEEccC--CCcEEEEEECCCCCcEEEEecCCCCC-eEEEEECCCCceeeeecCC---CCeEEEEEcCC
Q 011971 315 LFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGGGTADR-CIRFWNTTTNTHLSCMDTG---SQVCNLVWSKN 388 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~ll~sg~Gt~d~-~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~ 388 (474)
|++||.. ++.+..+..+ ...+..+++++++. ++++.. .++ .|.+||. +++.+..+... ..+..++++++
T Consensus 187 i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 187 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-EEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 9999974 5556666443 36789999999986 666654 454 9999995 56666666532 24789999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCc
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~ 412 (474)
|+.+++ . .++.|++|++....
T Consensus 262 g~l~vs--~-~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 262 GSVVLA--S-KDYRLYIYRYVQLA 282 (286)
T ss_dssp TEEEEE--E-TTTEEEEEECSCCC
T ss_pred CcEEEE--C-CCCeEEEEEccccc
Confidence 975554 3 58999999986543
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=2.2e-14 Score=134.94 Aligned_cols=241 Identities=9% Similarity=-0.005 Sum_probs=169.2
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 210 SVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 210 ~V~~v~~sp~g~~la-~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
...+++++++|++++ +...++.|.+||..+.........+...+.++++++ ..|+.+..++.|.+||...... ....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eeee
Confidence 788999999998666 446788999999765543322233445677888873 2344444488999999876542 2211
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
......+.+++++++|+.+++...++.|.+|+..+.............+.++++++++. ++++.. .++.|.+||...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~ 180 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAES 180 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECTTT
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEecCC
Confidence 22336789999999999888877788999998665544332223334678999999987 666654 468999999887
Q ss_pred CceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 368 NTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 368 ~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
......... ...+..++++++|..+++ ...++.|.+|+............+...+..++++++|+++++...++.|+
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 665443322 266899999999966555 55688999999876544332223445789999999999888888999999
Q ss_pred EEeCCCCCCC
Q 011971 447 FWNVFPSPKS 456 (474)
Q Consensus 447 iW~l~~~~~~ 456 (474)
++++......
T Consensus 259 ~~~~~~~~~~ 268 (270)
T 1rwi_B 259 KLTSLEHHHH 268 (270)
T ss_dssp EECCCGGGSC
T ss_pred EEcCCCcccc
Confidence 9998766543
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=6.2e-14 Score=134.18 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=168.9
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcc
Q 011971 206 GIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQED 282 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~ 282 (474)
.+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.++++++ .++++...++.|.+||..++..
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 3456788999999998 7888888999999999877 666667778899999973 5666666678999999976652
Q ss_pred eEeeecC----cCCCEEEEEEecCCCEEEEE----e-------------CCCcEEEEECCCCcceEEEccCCCcEEEEEE
Q 011971 283 FVSKLSG----HKSEVCGLKWSYDNRELASG----G-------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (474)
Q Consensus 283 ~~~~~~~----h~~~V~~l~~spd~~~lasg----~-------------~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (474)
...... ....+..++++|+|+++++. . ..+.|..++.. ++ +..+..+......++|
T Consensus 103 -~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 103 -ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAF 179 (296)
T ss_dssp -EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEE
T ss_pred -EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEE
Confidence 221111 12346789999999988873 3 13466667665 43 4445566777899999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECC-CCce---eeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTT-TNTH---LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT 416 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~---~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 416 (474)
+|+++.+ ++.. .++.|.+||+. ++.. ...+. ....+..++++++|+.+++ . ++.|.+|+.. ++.+..
T Consensus 180 s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 180 LPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp CTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT-SCEEEE
T ss_pred CCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC-CCEEEE
Confidence 9999877 6654 68899999987 4554 22221 2345678999999986665 3 7899999975 788888
Q ss_pred EcCCCccEEEEEE-CCCCCEEEEEeCCCcEEEEeCCC
Q 011971 417 LTGHTFRVLYLAI-SPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 417 l~~h~~~V~~l~~-spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+..+.. +.+++| +|+++.|++++.++ +|.+..
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 887777 999999 68999998888763 444443
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=2.2e-13 Score=142.28 Aligned_cols=269 Identities=12% Similarity=0.096 Sum_probs=197.9
Q ss_pred CcEEEEE--cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC--CCeEEEEecCCCCcE
Q 011971 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRV 253 (474)
Q Consensus 178 ~~~la~~--~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~--~~~~~~~~~~h~~~V 253 (474)
++++.+. .++.|.++|..+++++..+..+ ..+..+.|+|||+++++++.++.|.+||+. +.+.+..+.... ..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 3444444 4689999999999999887643 467799999999999999999999999996 788888776533 45
Q ss_pred EEEEec------CCEEEEEe-CCCcEEEEECcCCcceEeeecC----------cCC-CEEEEEEecCCCEE-EEEeCCCc
Q 011971 254 GALAWS------SSLLSSGS-RDKSILQRDIRAQEDFVSKLSG----------HKS-EVCGLKWSYDNREL-ASGGNDNR 314 (474)
Q Consensus 254 ~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~~-~V~~l~~spd~~~l-asg~~Dg~ 314 (474)
..++|+ ++++++++ .++.|.++|..+.+ .+..+.. |.. .+..+..++++..+ +....+|.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 678887 34665554 56999999988766 3333321 222 68889999876654 44556799
Q ss_pred EEEEECCCCcceE--EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCe---EEEE-EcC
Q 011971 315 LFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQV---CNLV-WSK 387 (474)
Q Consensus 315 v~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v---~~l~-~s~ 387 (474)
|.++|....+.+. .+ ........+.|+|++++++++.. .++.|.++|+.+++.+..+.. +... .... +.|
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 9999988754322 22 33446778999999999888875 578999999999998877765 3211 1222 578
Q ss_pred CCCeEEEEEecCCCeEEEEECCC-------CceeEEEcCCCccEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCC
Q 011971 388 NVNELVSTHGYSQNQIIVWRYPT-------MSKLATLTGHTFRVLYLAISPDGQTIVTGAG-------DETLRFWNVFPS 453 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~-------Dg~I~iW~l~~~ 453 (474)
++..+.++....++.|.++|..+ ++.+.++......-..+..+|++++|.+... .++|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 76666554334678999999987 7788888765444455789999999988663 459999999876
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=2.4e-14 Score=139.74 Aligned_cols=261 Identities=10% Similarity=0.016 Sum_probs=184.5
Q ss_pred CCeEEEEeCCCCCEEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec-
Q 011971 186 GNCVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS- 259 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~- 259 (474)
++.|.+||..++++...+.. ........+.+. ++..+++...++.|.+||..+++.+.++. .......++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 57999999999988664421 122456778874 34455555557899999999999988885 34667888884
Q ss_pred CCEEEEEe-CCCcEEEEECcCCcceEeeecCcC-----CCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCcceEEEccC
Q 011971 260 SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVLKYCEH 332 (474)
Q Consensus 260 ~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~~~~~~~~~~h 332 (474)
...++++. .++.|.+||..+.+ ....+.... ....++++ .++..+++.. .++.|.+||+.+++.+..+...
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYE-ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTE-EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEECCCCeEEEEECCCCe-EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 44666665 89999999998776 333333221 14567777 3444444443 4889999999999888777543
Q ss_pred CCcEEEEEECCCCCcEEEEecCCC--------CCeEEEEECCCCceeeeecC--CCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 333 TAAVKAIAWSPHLHGLLASGGGTA--------DRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 333 ~~~V~~l~~sp~~~~ll~sg~Gt~--------d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
.....++++|+++ +++++.+.. .+.|.+||..+++....+.. +.....++|+|+++.|+++ .. .
T Consensus 172 -~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~~--~ 245 (328)
T 3dsm_A 172 -IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--NN--D 245 (328)
T ss_dssp -SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--SS--S
T ss_pred -CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--cc--E
Confidence 3457899999987 555543211 27899999999988877764 4578999999999999984 22 8
Q ss_pred EEEEECCCCceeEE--EcCCCccEEEEEECC-CCCEEEEE----eCCCcEEEEeCCCCCCCC
Q 011971 403 IIVWRYPTMSKLAT--LTGHTFRVLYLAISP-DGQTIVTG----AGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 403 I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp-dg~~l~t~----s~Dg~I~iW~l~~~~~~~ 457 (474)
|.+||..+++.... +..+......++++| ++.+.++. ..++.|.+|+.. +....
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 99999988775321 122245688999999 55555555 578999999998 54433
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=6.3e-13 Score=138.86 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=203.6
Q ss_pred ceeeeeCCC-Cc-EEEEEcCCeEEEEeCC--CCCEEEEEecCCCCCEEEEEEc----CCCCEEEEEeC-CCcEEEecCCC
Q 011971 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWA----NRNTHLAVGTS-HGKVQIWDASR 239 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~s----p~g~~la~gs~-dg~I~iwd~~~ 239 (474)
....+.+++ ++ +++++.++.|.+||+. +++.+..+..+ .....++|+ |||++++++.. ++.|.|+|..+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 355788887 44 4555567899999996 78887776543 457899999 69999888776 58999999999
Q ss_pred CeEEEEecC----------CCC-cEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 240 CKRVRTMEG----------HRL-RVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 240 ~~~~~~~~~----------h~~-~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.+.+..+.. |.. ++..+..++ ..++....+|.|.++|...................++.|+|++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 998887652 212 677777763 466677778999999987654322222233456778999999999
Q ss_pred EEEEe-CCCcEEEEECCCCcceEEEcc-----CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cceee
Q 011971 306 LASGG-NDNRLFVWNQHSTQPVLKYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NTHLS 372 (474)
Q Consensus 306 lasg~-~Dg~v~iwd~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-------~~~~~ 372 (474)
|+++. .++.|.++|+.+++.+..+.. |.+....+ ++|++..+++++. ..++.|.++|+.+ .+.+.
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEEE
Confidence 87765 578999999999987766643 33222222 5887666777653 1368999999988 56777
Q ss_pred eecCCC-CeEEEEEcCCCCeEEEEEecC-----CCeEEEEECCCC-----cee-EEEc--------CCCccEEEEEECCC
Q 011971 373 CMDTGS-QVCNLVWSKNVNELVSTHGYS-----QNQIIVWRYPTM-----SKL-ATLT--------GHTFRVLYLAISPD 432 (474)
Q Consensus 373 ~~~~~~-~v~~l~~s~~~~~l~~~~g~~-----dg~I~iwd~~~~-----~~~-~~l~--------~h~~~V~~l~~spd 432 (474)
.+.... .-..+..+|+++++.+..... .+.|.|+|+.+. ... ..+. ....++.++.|+++
T Consensus 434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 777543 335578899999999853111 469999999877 221 3332 12457899999999
Q ss_pred CCEEEEEe-----CCCcEEEEeCCCCCCCC
Q 011971 433 GQTIVTGA-----GDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 433 g~~l~t~s-----~Dg~I~iW~l~~~~~~~ 457 (474)
|+.+..+. .++.|.++|..+.....
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence 99877653 37899999988765443
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=6.6e-14 Score=136.09 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=173.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEee
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
..|.++.|++++..++....++.++.| .++....+..+...+.+++|+ +.+++++..++.|.+||..+.. ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence 457788899988777777788899999 456677777777788999997 3666788889999999998765 2332
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecC----CC
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGND----NRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGG----TA 356 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~D----g~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~G----t~ 356 (474)
...+...+.+++|+++++++++...+ +.|.+||..++.....+. .+...+..++++|++. ++++..+ ..
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCC
Confidence 33466789999999999988877766 689999998876553333 2446789999999986 5554421 01
Q ss_pred CCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEE--------EcCCCccEEEE
Q 011971 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLAT--------LTGHTFRVLYL 427 (474)
Q Consensus 357 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~--------l~~h~~~V~~l 427 (474)
.+.|..||..+++..........+..++|+++++.|+++ ...++.|.+|++.+ +..+.. +.++ ..+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 356777777666554433334567899999999977664 45678999999963 332221 1222 467889
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCC
Q 011971 428 AISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+++++|+++++...++.|.+|+..
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT
T ss_pred EECCCCCEEEEEcCCCEEEEECCC
Confidence 999999988888888999999984
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=3.2e-13 Score=128.41 Aligned_cols=211 Identities=13% Similarity=0.032 Sum_probs=167.3
Q ss_pred CCCEEEEEeCCCcEEEecCCCCeEEEEecCCC-CcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCc-CCCE
Q 011971 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-LRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEV 294 (474)
Q Consensus 219 ~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 294 (474)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+. +++|+ +.++.|..||. +++ .+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 46789999999999999999999999998766 467778886 46666 45788999998 555 45555554 3578
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECCCCcceEEEcc------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 295 CGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~-Dg~v~iwd~~~~~~~~~~~~------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
.++.+.++|+.+++.+. ++.|..+|. +++.+.++.. +......+++.+++..+ ++.. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~--~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLF--ATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEET--TTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEE-EEec--CCCEEEEECCC-
Confidence 89999999999999887 788888886 6777766642 22345567788998854 4543 68999999998
Q ss_pred CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC------ccEEEEEECCCCCEEEEEe
Q 011971 368 NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT------FRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 368 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~l~t~s 440 (474)
|+.+..+.....+..+...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.++++..
T Consensus 155 G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999999987777788889999999988 6677899999999999999886432 2378889999999888774
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=5.7e-14 Score=137.17 Aligned_cols=230 Identities=9% Similarity=0.067 Sum_probs=154.8
Q ss_pred eeeeeCCC-CcEEEEEc-C---C--eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-------------
Q 011971 170 LNLVDWSS-HNVLAVGL-G---N--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------------- 229 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~-d---~--~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d------------- 229 (474)
+..+.|+| ++.|+... + + .|++|++.+++...+... .. +.+++|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 67789998 55555443 2 3 489999999887777643 23 9999999999999888642
Q ss_pred --------------CcEEEecCCCCeEEEEecCCCCcEEEEEecCC-EEEEEeCCC-------cEEEEECcCCcceEeee
Q 011971 230 --------------GKVQIWDASRCKRVRTMEGHRLRVGALAWSSS-LLSSGSRDK-------SILQRDIRAQEDFVSKL 287 (474)
Q Consensus 230 --------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~-~l~sgs~dg-------~I~iwd~~~~~~~~~~~ 287 (474)
..|.+||+.+++.+..+.. . .+..++|+++ +++++..++ ...+|.+.++. ...+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK--EEKM 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE--EEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc--eEEe
Confidence 5799999998887455554 3 7888999854 666665542 34455444322 3334
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcceEEEccCCCcEEE-EEECCCCCcEEEEecCCCCC
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGND--------NRLFVWNQHSTQPVLKYCEHTAAVKA-IAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~D--------g~v~iwd~~~~~~~~~~~~h~~~V~~-l~~sp~~~~ll~sg~Gt~d~ 358 (474)
..+ ..+..+ +|||++|+.++.+ ..|++|| +++.......+...+.. +.|+ ++ +++++. .++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~ 283 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF--EEG 283 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE--ETT
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEe--cCC
Confidence 444 555554 9999999887754 3688888 55544334456778886 9999 76 666654 788
Q ss_pred eEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeE-EEEECCCCceeEEEcCCCcc
Q 011971 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI-IVWRYPTMSKLATLTGHTFR 423 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I-~iwd~~~~~~~~~l~~h~~~ 423 (474)
.+++| +.+++....+.....|..+.|++ ..+++ +..++.. .||.+. ++ ...+..|...
T Consensus 284 ~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~--~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 284 SVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYL--KETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEE--EECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred cEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEE--EcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 99999 87676655555566789999999 44444 3344443 666665 43 4556666543
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=2.7e-13 Score=132.15 Aligned_cols=238 Identities=8% Similarity=-0.036 Sum_probs=176.4
Q ss_pred eeeeeCCCCcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSSHNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~~~~~~~~ 247 (474)
...+.+..+.++++.. ++.|.+||..+++.+..+. .......+++++++ .|+++. .++.|.+||..+++....+.
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 3445555666666665 6899999999999988774 34678999999988 455555 78999999999999887765
Q ss_pred CCC-----CcEEEEEecCCEEEEEe--CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC--------
Q 011971 248 GHR-----LRVGALAWSSSLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-------- 312 (474)
Q Consensus 248 ~h~-----~~V~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-------- 312 (474)
... .....+++.++.|+++. .++.|.++|+.+.+ .+..+.. .....++.++++|++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 332 14456666777666665 48899999998876 3444432 2345788899999877776554
Q ss_pred --CcEEEEECCCCcceEEEccC-CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ecC-CCCeEEEEEc
Q 011971 313 --NRLFVWNQHSTQPVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC--MDT-GSQVCNLVWS 386 (474)
Q Consensus 313 --g~v~iwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~--~~~-~~~v~~l~~s 386 (474)
+.|.++|..+++....+... ......++++|+++.++++. +.|.+||..+++.... +.. ......++++
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 78999999998877666432 34688999999998777752 3899999998876421 222 4678999999
Q ss_pred CCCCeEEEEEe----cCCCeEEEEECCCCceeEEEcC
Q 011971 387 KNVNELVSTHG----YSQNQIIVWRYPTMSKLATLTG 419 (474)
Q Consensus 387 ~~~~~l~~~~g----~~dg~I~iwd~~~~~~~~~l~~ 419 (474)
|++..|+++ . ..++.|.+||.. ++.+.++..
T Consensus 276 p~~g~lyva-~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 276 PNNGEVYVA-DAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp TTTCCEEEE-ECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CCCCeEEEE-cccccccCCEEEEECCC-CCEEEEEEe
Confidence 976666664 4 467899999987 888887753
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=2.9e-14 Score=153.37 Aligned_cols=259 Identities=8% Similarity=-0.062 Sum_probs=177.6
Q ss_pred eEEEEeCCCCCEEEEEec-----CCCCCEEEEEEcCCCCEEEEE-----eCCCcEEEecCCCCeEEEEecCCCCcE--EE
Q 011971 188 CVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVG-----TSHGKVQIWDASRCKRVRTMEGHRLRV--GA 255 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~g-----s~dg~I~iwd~~~~~~~~~~~~h~~~V--~~ 255 (474)
.|++.+...++...+++. +|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~ 172 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYAT 172 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccc
Confidence 455556555655555432 344478999999999999954 334689999999987641 1122222 67
Q ss_pred EEecC--CEEEEEeCCCc-------------EEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEEEEEeCCC----
Q 011971 256 LAWSS--SLLSSGSRDKS-------------ILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDN---- 313 (474)
Q Consensus 256 l~~~~--~~l~sgs~dg~-------------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg---- 313 (474)
++|++ ..|+.++.|.. |++|++.++.. .+.....|...+.++.|+|||++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 89984 68888888776 99999987652 3333445667899999999999999887766
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEec-CCCCCeEEEEECCCCce---eeeecC--CCCeEEEEEcC
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNTH---LSCMDT--GSQVCNLVWSK 387 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~s~ 387 (474)
.|++||..+++ ...+..+...+....| +++. +++... +..++.|.+||+.++.. ...+.+ ...+..+.|+
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence 78888766554 4455556666667777 6666 666543 11368899999988753 333333 3347788888
Q ss_pred CCCeEEEEEecCCCeEEEEECC-CCceeEEEcCC-CccEEEEEECCCCCEEEEEe----CCCcEEEEeCCCCC
Q 011971 388 NVNELVSTHGYSQNQIIVWRYP-TMSKLATLTGH-TFRVLYLAISPDGQTIVTGA----GDETLRFWNVFPSP 454 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~s----~Dg~I~iW~l~~~~ 454 (474)
++..+++ ...++..+||.+. .++.+..+..+ .+.|..++++|++..|+... ..++|++||+.++.
T Consensus 329 ~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 329 GGHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TTEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444444 5678877777654 45666666655 66788889999998776332 34789999998765
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=1.2e-11 Score=117.57 Aligned_cols=270 Identities=10% Similarity=-0.054 Sum_probs=185.6
Q ss_pred cceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE-
Q 011971 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR- 244 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~- 244 (474)
.....+.+++ ++++++.. ++.|.+||.. ++............+.++++.++|.++++...++.|..||.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 3567788877 66666664 6899999988 766553211234679999999999877766667889999988 55432
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+......+.+++++ +.++++...++.|..+|.. +......+......+.++++.++++.+++...++.|.+||. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 233344678899987 3566666668899999987 44222223334567899999999997777666789999998 5
Q ss_pred CcceE-EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-ec-CCCCeEEEEEcCCCCeEEEEEecC
Q 011971 323 TQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MD-TGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 323 ~~~~~-~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
++... ....+...+.++++++++. ++++.. ..+.|..||. +++.... +. ....+..++++++++.+++ ...
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~ 249 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT--EWG 249 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe--ccC
Confidence 54432 2223455789999999885 666543 4678999998 5554332 22 3456899999999986555 445
Q ss_pred CCeEEEEECCCCcee-EEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 400 QNQIIVWRYPTMSKL-ATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 400 dg~I~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
++.|..|+. +++.. ..+......+.++++.++|.+.++.. . .|..++.
T Consensus 250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 789999998 44432 22333456688999999998666544 4 6665554
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=4e-13 Score=129.11 Aligned_cols=237 Identities=10% Similarity=0.064 Sum_probs=170.6
Q ss_pred CCCEEEEEEcCCCCEEEE-------EeCCCcEEEecCCCCeEEEEec----CCCCcEEEEEecC--CEEEEEeCCCcEEE
Q 011971 208 DDSVCSVGWANRNTHLAV-------GTSHGKVQIWDASRCKRVRTME----GHRLRVGALAWSS--SLLSSGSRDKSILQ 274 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~-------gs~dg~I~iwd~~~~~~~~~~~----~h~~~V~~l~~~~--~~l~sgs~dg~I~i 274 (474)
-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.++++++ ..|..++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 346789999999987777 5678899999988776543322 2556788999974 46666666668999
Q ss_pred EECcCCcceEee-ec----CcCCCEEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCcceEEEccCCC
Q 011971 275 RDIRAQEDFVSK-LS----GHKSEVCGLKWSYDNRELASGGND---------------NRLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 275 wd~~~~~~~~~~-~~----~h~~~V~~l~~spd~~~lasg~~D---------------g~v~iwd~~~~~~~~~~~~h~~ 334 (474)
||.. +. .... .. .....+.+++++++|+++++...+ +.|..||.. ++.. .+..+..
T Consensus 97 ~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~ 172 (314)
T 1pjx_A 97 VQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQ 172 (314)
T ss_dssp EETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEES
T ss_pred EeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCC
Confidence 9987 44 2222 11 112458899999999888777654 578888866 4433 3323445
Q ss_pred cEEEEEEC----CCCCcEEEEecCCCCCeEEEEECC-CCce-----eeeecCC--CCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 335 AVKAIAWS----PHLHGLLASGGGTADRCIRFWNTT-TNTH-----LSCMDTG--SQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 335 ~V~~l~~s----p~~~~ll~sg~Gt~d~~I~iwd~~-~~~~-----~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
....++|+ |+++.++++.. .++.|.+||+. +++. ...+... ..+..++++++|+.+++ ...++.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTTE
T ss_pred CcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--EcCCCE
Confidence 56889999 99877777754 57899999976 4432 2222222 45788999999987777 456789
Q ss_pred EEEEECCCCceeEEEcCCCccEEEEEECCCCCEEE-EEeCCCcEEEEeCCC
Q 011971 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIV-TGAGDETLRFWNVFP 452 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-t~s~Dg~I~iW~l~~ 452 (474)
|.+||..+++.+..+..+...+.+++|+++|+.|+ +...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987887777777778899999999999554 555668899999864
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=4.6e-13 Score=125.82 Aligned_cols=238 Identities=11% Similarity=-0.017 Sum_probs=163.8
Q ss_pred cceeeeeCCC-CcEEE-E-EcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 168 FYLNLVDWSS-HNVLA-V-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la-~-~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
+....+.+++ +++++ + ..++.|++|+..+...... .......+.+|+++++|+++++.. ++.|.+||........
T Consensus 24 ~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 24 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CCccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 3577888887 56665 4 3468999999876654332 223345788999999998555554 8899999987654432
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
........+..++++ +.++++...++.|.+|+..+... ..........+.+++++++++++++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 222333678899997 35666667788999997655432 222223334678999999999877777788999999887
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
.........+...+.++++++++ .++++.. .++.|.+||............ ...+..++++++|+.+++ ...++
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~~ 255 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA--DRGND 255 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--EGGGT
T ss_pred CceEeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--ECCCC
Confidence 65443333344678999999998 4776654 578899999876544332222 256899999999985555 66889
Q ss_pred eEEEEECCCCce
Q 011971 402 QIIVWRYPTMSK 413 (474)
Q Consensus 402 ~I~iwd~~~~~~ 413 (474)
.|.++++...+.
T Consensus 256 ~v~~~~~~~~~~ 267 (270)
T 1rwi_B 256 RVVKLTSLEHHH 267 (270)
T ss_dssp EEEEECCCGGGS
T ss_pred EEEEEcCCCccc
Confidence 999999876543
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=6.3e-13 Score=143.30 Aligned_cols=251 Identities=12% Similarity=0.023 Sum_probs=175.0
Q ss_pred cccccCCCCCC--CcceeeeeCCC-CcEEEEEc--CC----eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 011971 156 YKILDAPALQD--DFYLNLVDWSS-HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 156 ~~~l~ap~~~~--d~~v~~l~~s~-~~~la~~~--d~----~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (474)
..++|...+.. .+.+..+.||| ++.|+.+. +| .|++||+.+++...... .+ ..+.+++|+|||+.|+.+
T Consensus 111 ~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 111 RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEE
T ss_pred EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEE
Confidence 34455444332 24688999999 66666653 22 89999999998876432 22 236789999999999999
Q ss_pred eCCCc----------------EEEecCCCCe----EEEEecCCCCcEEEEEecC--CEEEEEeC-----CCcEEEEECcC
Q 011971 227 TSHGK----------------VQIWDASRCK----RVRTMEGHRLRVGALAWSS--SLLSSGSR-----DKSILQRDIRA 279 (474)
Q Consensus 227 s~dg~----------------I~iwd~~~~~----~~~~~~~h~~~V~~l~~~~--~~l~sgs~-----dg~I~iwd~~~ 279 (474)
+.++. |.+|++.+++ .+.....|...+..+.|++ .+|+.++. +..|.+||+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 88766 9999998765 2323334566788899984 66666654 56899999986
Q ss_pred ------CcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCcc--eEEEccCCC--cEEEEEECCCC
Q 011971 280 ------QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQP--VLKYCEHTA--AVKAIAWSPHL 345 (474)
Q Consensus 280 ------~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg----~v~iwd~~~~~~--~~~~~~h~~--~V~~l~~sp~~ 345 (474)
+......+..+...+.. .|+++|+.|+..++++ .|.+||+.++.. ...+..|.. .+..++|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 43234555566666655 4889999888776643 599999987742 345545544 68889998654
Q ss_pred CcEEEEecCCCCC--eEEEEECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q 011971 346 HGLLASGGGTADR--CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTH--GYSQNQIIVWRYPTMS 412 (474)
Q Consensus 346 ~~ll~sg~Gt~d~--~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~ 412 (474)
.++++.. .|+ .|.+||+.+++.+..+.. ...+..+.+++++..++.+. ....+.|++||+.+++
T Consensus 348 -~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 348 -FLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -EEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -EEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4666654 566 467788877877666654 44578889999998777542 2346799999998876
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=2.9e-11 Score=114.79 Aligned_cols=235 Identities=9% Similarity=-0.043 Sum_probs=169.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE-ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT-MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+...+.++++.++|.++++...++.|.+||.. ++.... +..+...+.+++++ +.++++...++.|..||.. +...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 34689999999999877766557899999988 554332 23355778999997 3566665668889999986 2211
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE-EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
...+......+.++++.++++++++...++.|.+||. +++... ....+...+..+++.+++. ++++.. .++.|..
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~ 166 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTEN--QNNAIGR 166 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEET--TTTEEEE
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeC--CCCEEEE
Confidence 1222234567899999999988888777889999998 554332 2223456789999999985 666543 4688999
Q ss_pred EECCCCceeee-ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE-EcCCCccEEEEEECCCCCEEEEE
Q 011971 363 WNTTTNTHLSC-MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT-LTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 363 wd~~~~~~~~~-~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
||. +++.... .. ....+..++++++++.+++ ....+.|.+|+. +++.... +..+...+..++++++|.++++.
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 998 6665432 22 3456889999999886665 556789999998 6654322 23355678999999999877766
Q ss_pred eCCCcEEEEeCC
Q 011971 440 AGDETLRFWNVF 451 (474)
Q Consensus 440 s~Dg~I~iW~l~ 451 (474)
..++.|..|+..
T Consensus 243 ~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 WGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCceEEEECCC
Confidence 678899999973
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=3.1e-12 Score=121.59 Aligned_cols=210 Identities=12% Similarity=0.042 Sum_probs=158.5
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC-CCcE
Q 011971 176 SSHNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRV 253 (474)
Q Consensus 176 s~~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h-~~~V 253 (474)
+|+++|+++. ++.|++||.++++.+..+..+....+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ...+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 4577777765 789999999999998877643224789999999999888 45778999999 89999988865 3567
Q ss_pred EEEEec--CCEEEEEeC-CCcEEEEECcCCcceEeeec------CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 254 GALAWS--SSLLSSGSR-DKSILQRDIRAQEDFVSKLS------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 254 ~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
.++.+. ++++++.+. ++.|..+|.. ++ .+..+. .+......+.+.++|+++++...++.|.+||.. ++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 777775 578888777 7778877763 33 233222 222345566788999999999999999999998 99
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeEEEEEcCCCCeEEEE
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------SQVCNLVWSKNVNELVST 395 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s~~~~~l~~~ 395 (474)
.+.++... ..+.++...+++..+ +++. .++.|..+|..+|+.+..+... ..+..+...++|+.+++.
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~-v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCL-VACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEE-EECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEEECC-CCccceeEcCCCCEE-EEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 99888654 455678888988744 4443 5678999999999998888532 126778888888877773
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=2e-12 Score=123.67 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=162.7
Q ss_pred ceeeeeCCC-Cc-EEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 169 YLNLVDWSS-HN-VLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+...+.|++ ++ ++.++. ++.|++|+..++ . ..+. .+...+.+++++++|+++++...++.|.+||..+++....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 467899998 55 666664 789999999987 4 3443 3567899999999999877776678999999988775544
Q ss_pred ecCC----CCcEEEEEecC--CEEEE----Ee-------------CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC
Q 011971 246 MEGH----RLRVGALAWSS--SLLSS----GS-------------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 246 ~~~h----~~~V~~l~~~~--~~l~s----gs-------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (474)
.... ...+..+++++ .++++ |+ ..+.|..++.. +. ...+..+...+.+++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEECCC
Confidence 3321 23456788873 56665 32 13456666654 22 3444556677899999999
Q ss_pred CCEEEEEeCCCcEEEEECC-CCcc---eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC
Q 011971 303 NRELASGGNDNRLFVWNQH-STQP---VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS 378 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~-~~~~---~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~ 378 (474)
++.|++.+.++.|++||+. +++. ...+..+...+.+++++++|. ++++. ++.|.+||.. ++.+..+....
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEECCC
Confidence 9999777788999999987 4443 233333556678899999997 55543 5789999986 77777776544
Q ss_pred CeEEEEE-cCCCCeEEEEEecCCCeEEEEECCCCc
Q 011971 379 QVCNLVW-SKNVNELVSTHGYSQNQIIVWRYPTMS 412 (474)
Q Consensus 379 ~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~ 412 (474)
.+.+++| .++++.|+++ .. +.+.-++..+..
T Consensus 257 ~~~~~~f~~~d~~~L~v~--t~-~~l~~~~~~~~~ 288 (296)
T 3e5z_A 257 TTSNLCFGGPEGRTLYMT--VS-TEFWSIETNVRG 288 (296)
T ss_dssp CCCEEEEESTTSCEEEEE--ET-TEEEEEECSCCB
T ss_pred CceeEEEECCCCCEEEEE--cC-CeEEEEEccccc
Confidence 4899999 5899988884 33 456666665544
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=6.9e-13 Score=143.71 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=162.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCc-----------
Q 011971 209 DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKS----------- 271 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~----------- 271 (474)
..+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|++ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 368899999999999987654 36999999998876531 1222235788976 57777776554
Q ss_pred ---EEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--cceEEEccCCCcEEE
Q 011971 272 ---ILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHST--QPVLKYCEHTAAVKA 338 (474)
Q Consensus 272 ---I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg-----~v~iwd~~~~--~~~~~~~~h~~~V~~ 338 (474)
|++|++.+... .+.....+...+.++.|+|||++|+..+.++ .|++||+.++ +....+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 88999876542 2222233444689999999999998877544 8999999877 314555555555555
Q ss_pred EEECCCCCcEEEEec-CCCCCeEEEEECCCC--ceeeeecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCce
Q 011971 339 IAWSPHLHGLLASGG-GTADRCIRFWNTTTN--THLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP-TMSK 413 (474)
Q Consensus 339 l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~--~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~ 413 (474)
..+ |++..|++... +..++.|.+||+.++ .....+... ..+..+.|+ +..++.+ ...++..+||.+. ++..
T Consensus 322 ~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~-~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 FVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS-YIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE-EEETTEEEEEEEETTSCE
T ss_pred EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE-EEECCEEEEEEEeCCCCc
Confidence 544 88887777653 112566999999875 233333333 235567777 3444443 5567776666554 4566
Q ss_pred eEEEcC-CCccEEEEEECCCCCEEEEE----eCCCcEEEEeCCCCC
Q 011971 414 LATLTG-HTFRVLYLAISPDGQTIVTG----AGDETLRFWNVFPSP 454 (474)
Q Consensus 414 ~~~l~~-h~~~V~~l~~spdg~~l~t~----s~Dg~I~iW~l~~~~ 454 (474)
+..+.. +.+.|..++++||+..|+.. ...++|++||+.++.
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666664 36778899999998866532 234789999998764
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=3.8e-11 Score=119.12 Aligned_cols=257 Identities=9% Similarity=-0.015 Sum_probs=179.1
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEecCCCCeEEEEecCC-------C
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT----------SHGKVQIWDASRCKRVRTMEGH-------R 250 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs----------~dg~I~iwd~~~~~~~~~~~~h-------~ 250 (474)
.|++||..+++++..+..+. .+ .++++|||++|+++. .++.|.+||..+.+.+..+... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 89999999999887775432 23 999999999999886 3678999999998888776422 1
Q ss_pred CcEEEEEec--CCEEEEEeC--CCcEEEEECcCCcceEee-ecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc
Q 011971 251 LRVGALAWS--SSLLSSGSR--DKSILQRDIRAQEDFVSK-LSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 251 ~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~ 324 (474)
.....++|+ +++|+++.. ++.|.++| .+.+ .+.. +.. .. ++.+.|++ +.+++.+.||.+.++|. +++
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 234467786 477887764 57899999 7766 3444 322 12 23445554 45677788999999999 777
Q ss_pred ceEEEc-----cCCCc-EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecC-----------CCCeEEEEE
Q 011971 325 PVLKYC-----EHTAA-VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDT-----------GSQVCNLVW 385 (474)
Q Consensus 325 ~~~~~~-----~h~~~-V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~ 385 (474)
.+.... ....+ .....+.+++..+++.. .++.+.+.|+.++. .+..+.. ......+.+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 653321 11112 12345666666555554 46789999987653 2222221 122445789
Q ss_pred cCCCCeEEEEEec--------CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 011971 386 SKNVNELVSTHGY--------SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGA-GDETLRFWNVFPSPK 455 (474)
Q Consensus 386 s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s-~Dg~I~iW~l~~~~~ 455 (474)
+++++.++++... ..+.|.++|..+++.+..+.. .....+++|+|||+ .++++. .++.|.+||+.+.+.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 9999998885321 246899999999999998863 33578999999999 777777 589999999998876
Q ss_pred CCC
Q 011971 456 SQN 458 (474)
Q Consensus 456 ~~~ 458 (474)
...
T Consensus 354 v~~ 356 (373)
T 2mad_H 354 DQS 356 (373)
T ss_pred Eee
Confidence 654
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=4.2e-11 Score=118.74 Aligned_cols=241 Identities=7% Similarity=-0.053 Sum_probs=170.5
Q ss_pred eeeCCC-CcEEEEEc-----------CCeEEEEeCCCCCEEEEEecC-C-----CCCEEEEEEcCCCCEEEEEeC--CCc
Q 011971 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLG-I-----DDSVCSVGWANRNTHLAVGTS--HGK 231 (474)
Q Consensus 172 ~l~~s~-~~~la~~~-----------d~~V~lwd~~~~~~~~~~~~~-~-----~~~V~~v~~sp~g~~la~gs~--dg~ 231 (474)
.+.+++ ++.+.++. ++.|.+||..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 677787 55555553 578999999999888877654 1 123568999999999999874 478
Q ss_pred EEEecCCCCeEEEE-ecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeec-----CcCCC-EEEEEEecCCC
Q 011971 232 VQIWDASRCKRVRT-MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS-----GHKSE-VCGLKWSYDNR 304 (474)
Q Consensus 232 I~iwd~~~~~~~~~-~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~-V~~l~~spd~~ 304 (474)
|.++| .+++.+.. +.. ...+....+.+..+++.+.||.+.++|. +++. ..... ..... .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCC
Confidence 99999 99998887 653 2223333444577888889999999999 6553 21111 11112 12345666666
Q ss_pred EEEEEeCCCcEEEEECCCCcc--eEEEcc----------CCCcEEEEEECCCCCcEEEEecCC-------CCCeEEEEEC
Q 011971 305 ELASGGNDNRLFVWNQHSTQP--VLKYCE----------HTAAVKAIAWSPHLHGLLASGGGT-------ADRCIRFWNT 365 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~--~~~~~~----------h~~~V~~l~~sp~~~~ll~sg~Gt-------~d~~I~iwd~ 365 (474)
.++..+.++.+.+.|+..... +..+.. .......++++|+++.++++.... .++.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 655555788999999976532 222211 122344588999998888865210 1357999999
Q ss_pred CCCceeeeecCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 366 TTNTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 366 ~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
.+++.+..+..+.....+.|+++|+ .++++ ...++.|.++|..+++.+..+
T Consensus 306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISLGHDVDAISVAQDGGPDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCEEEEEEECCCCcCeEEECCCCCeEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 9999999999888899999999999 55553 446899999999999998884
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=4.4e-12 Score=125.09 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=184.4
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEecCCCCeEEEEecCCC-----
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT----------SHGKVQIWDASRCKRVRTMEGHR----- 250 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs----------~dg~I~iwd~~~~~~~~~~~~h~----- 250 (474)
++.|++.|..+++++..+..+.. + . +.++|||++|+++. .++.|.+||..+.+.+..+.-..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 46999999999999988876543 3 3 99999999888876 35789999999999888875221
Q ss_pred --CcEEEEEec--CCEEEEEeC--CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-C
Q 011971 251 --LRVGALAWS--SSLLSSGSR--DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-T 323 (474)
Q Consensus 251 --~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~-~ 323 (474)
.....++++ +++++++.. ++.|.++|+.+.+ .+..+.-. + +...+....+.+++.+.||.+.+.++.. +
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 234457776 577777764 6899999999877 45554321 1 2333433556777888899999999976 5
Q ss_pred cceEEEccCC----CcE-EEEEEC-CCCCcEEEEecCCCCCeEEEEECCCCc--eeeeec-----------CCCCeEEEE
Q 011971 324 QPVLKYCEHT----AAV-KAIAWS-PHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMD-----------TGSQVCNLV 384 (474)
Q Consensus 324 ~~~~~~~~h~----~~V-~~l~~s-p~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~-----------~~~~v~~l~ 384 (474)
+.......+. .++ ...+|. ++|+.++++ .++.|.+.|+.++. .+..+. .......++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 5433221111 122 124554 676544543 57899999997664 233332 012344577
Q ss_pred EcCCCCeEEEEEec--------CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEE-eCCCcEEEEeCCCCC
Q 011971 385 WSKNVNELVSTHGY--------SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTG-AGDETLRFWNVFPSP 454 (474)
Q Consensus 385 ~s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~-s~Dg~I~iW~l~~~~ 454 (474)
++++++.++++... ..+.|.++|..+++.+..+..- .++..|++++|++ +|+++ ..++.|.++|..++.
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 79999999986431 1368999999999999988642 3688999999997 66665 458999999999887
Q ss_pred CCCCCCCCc
Q 011971 455 KSQNTDSEI 463 (474)
Q Consensus 455 ~~~~~~~~~ 463 (474)
.....+...
T Consensus 366 ~~~~i~~~~ 374 (386)
T 3sjl_D 366 ELRSVNQLG 374 (386)
T ss_dssp EEEEECCCC
T ss_pred EEEEecCCC
Confidence 655544433
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.52 E-value=1.9e-13 Score=135.25 Aligned_cols=273 Identities=12% Similarity=0.070 Sum_probs=183.1
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCC---------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~---------~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
.++++++++ ..++++|....+.+|++.... ........+.. |+.|+| ++++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 488999998 778888887889999865332 11111223455 999999 89999999 78999999998
Q ss_pred CCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
+.........|...+.++.+.+..+++++.||.|.+||+..... .. +...|++++|+|+| ++.|..||++++|
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~ 187 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSF 187 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence 77666666778888999988866699999999999999987652 22 45689999999999 7889999999999
Q ss_pred ECCCCcc--eEEE------c---cCCCcEEEEEECCCCCcEEEEecCC---C-----CCeEEEEECCCCcee-eee-c--
Q 011971 319 NQHSTQP--VLKY------C---EHTAAVKAIAWSPHLHGLLASGGGT---A-----DRCIRFWNTTTNTHL-SCM-D-- 375 (474)
Q Consensus 319 d~~~~~~--~~~~------~---~h~~~V~~l~~sp~~~~ll~sg~Gt---~-----d~~I~iwd~~~~~~~-~~~-~-- 375 (474)
+...++. ..++ . +|...|.+|.|.+++..+++-+... . +..+++.+...+... ..+ +
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~ 267 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDIT 267 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSC
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCc
Confidence 9887764 5556 3 3788999999999887666544311 1 224666662222211 111 1
Q ss_pred --CCC-----C---eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-------------CCCccEEEEEE--C
Q 011971 376 --TGS-----Q---VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-------------GHTFRVLYLAI--S 430 (474)
Q Consensus 376 --~~~-----~---v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~--s 430 (474)
.+. . ..--.|.|+.+.|+.++....-.|-+++-. +.+..+. .-......+++ +
T Consensus 268 ~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG~alD~s 345 (388)
T 1xip_A 268 PPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPIGVAVDVV 345 (388)
T ss_dssp CCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEEEEEEECS
T ss_pred CCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccceeccCCCCCCCCcceEEEEEcc
Confidence 111 1 122357777777777656566666666532 2111111 11122333433 2
Q ss_pred CC---------------CCEEEEEeCCCcEEEEeCCCCC
Q 011971 431 PD---------------GQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 431 pd---------------g~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.. -..|..-+.||.+..|.+....
T Consensus 346 s~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~ 384 (388)
T 1xip_A 346 TSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVA 384 (388)
T ss_dssp CCC--------------CCEEEEEETTSEEEEEEEEC--
T ss_pred cCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchh
Confidence 11 1247778899999999987654
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=2.4e-11 Score=122.08 Aligned_cols=233 Identities=9% Similarity=-0.017 Sum_probs=165.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCC--cEEEEECcCCcceE
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDK--SILQRDIRAQEDFV 284 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~~ 284 (474)
.....|+|+++|+++++...++.|++||..+++.......... .. ++|+ ++.|+++..++ .|.+++...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999777777788999999998877666554332 23 7776 46788888766 788888766542 2
Q ss_pred eee----cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE----EccCCCcE-E-EEEECCCCCcEEEEecC
Q 011971 285 SKL----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK----YCEHTAAV-K-AIAWSPHLHGLLASGGG 354 (474)
Q Consensus 285 ~~~----~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~----~~~h~~~V-~-~l~~sp~~~~ll~sg~G 354 (474)
..+ ......+.+++++|++..|+++..++.|+.||..++..... ...+...- . .++|+|++..|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~- 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ- 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-
Confidence 222 22456678999999555666677788999999987753322 11222222 2 9999997677888765
Q ss_pred CCCCeEEEEECCCCceeeeecC---------------CCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceeEEEc
Q 011971 355 TADRCIRFWNTTTNTHLSCMDT---------------GSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 355 t~d~~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~ 418 (474)
.++.|+.|+.... ....... -.....++++++|+.+++ .. ..+.|+.|++.++.. ..+.
T Consensus 287 -~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 287 -NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp -TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE-EEEE
T ss_pred -CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE-EEEe
Confidence 6889999997643 2222221 134789999999995555 66 788999999877764 4444
Q ss_pred CC---------------CccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 419 GH---------------TFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 419 ~h---------------~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
++ -.....++++++|.++++-..++.|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 43 245889999999888888888889988875
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.1e-11 Score=122.23 Aligned_cols=243 Identities=10% Similarity=0.016 Sum_probs=170.1
Q ss_pred CCeEEEEeCCCCCEEEEEecCC------CCCEEEEEEcCCCCEEEEEeC--CCcEEEecCCCCeEEEEecCCCCcEEEEE
Q 011971 186 GNCVYLWNACSSKVTKLCDLGI------DDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~------~~~V~~v~~sp~g~~la~gs~--dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 257 (474)
++.|.+||..+.+....+.++. ......+.|+|||++|+++.. ++.|.++|+.+++.+.++.... .....-
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~~~~~P 186 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-CYHIFP 186 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-cceeec
Confidence 5689999999999988886643 124667999999999998874 6899999999999999885322 111111
Q ss_pred ecCCEEEEEeCCCcEEEEECcCCcceEeeecCc----CCCEE-EEEEe-cCCCEEEEEeCCCcEEEEECCCCcc--eEEE
Q 011971 258 WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH----KSEVC-GLKWS-YDNRELASGGNDNRLFVWNQHSTQP--VLKY 329 (474)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~-~l~~s-pd~~~lasg~~Dg~v~iwd~~~~~~--~~~~ 329 (474)
.....+++.+.||.+.+.++............+ ...+. ...|. ++|++++ .+.+|.|++.|+.+... +..+
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCE
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecce
Confidence 235778899999999999997633222211111 11221 23564 5665444 66689999999976542 2222
Q ss_pred c----------cCCCcEEEEEECCCCCcEEEEec----CC---CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCC-e
Q 011971 330 C----------EHTAAVKAIAWSPHLHGLLASGG----GT---ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN-E 391 (474)
Q Consensus 330 ~----------~h~~~V~~l~~sp~~~~ll~sg~----Gt---~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~-~ 391 (474)
. ........++++++++.++++.. |+ ..+.|.++|+.+++.+..+..+..+..+.++++++ .
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 345 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCE
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeE
Confidence 1 01223445788999998888642 00 12579999999999999999888999999999997 5
Q ss_pred EEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCC
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 432 (474)
|+++ ...++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 346 ly~t-n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 346 LYAL-STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEE-ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEE-cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 6664 456899999999999999988642 22234566665
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.4e-11 Score=115.44 Aligned_cols=232 Identities=9% Similarity=0.056 Sum_probs=159.0
Q ss_pred eeeeeCCC-CcEEEE--------EcCCeEEEEeCCCCCEEEEEe---cCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEec
Q 011971 170 LNLVDWSS-HNVLAV--------GLGNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 170 v~~l~~s~-~~~la~--------~~d~~V~lwd~~~~~~~~~~~---~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd 236 (474)
...++|++ +.++++ ..++.|++||..+++...... .++...+.+++++++ |++++ ++..+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEEe
Confidence 56788887 566666 467899999998888765432 013467999999999 65444 44445799999
Q ss_pred CCCCeEEEE-ecC----CCCcEEEEEecC--CEEEEEeCC---------------CcEEEEECcCCcceEeeecCcCCCE
Q 011971 237 ASRCKRVRT-MEG----HRLRVGALAWSS--SLLSSGSRD---------------KSILQRDIRAQEDFVSKLSGHKSEV 294 (474)
Q Consensus 237 ~~~~~~~~~-~~~----h~~~V~~l~~~~--~~l~sgs~d---------------g~I~iwd~~~~~~~~~~~~~h~~~V 294 (474)
.. ++.... ... ....+.++++++ .++++...+ +.|..+|.. +. ...+..+....
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFP 174 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSE
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCc
Confidence 88 665433 221 124578899873 555555444 567777765 32 22233344567
Q ss_pred EEEEEe----cCCCEEEEE-eCCCcEEEEECC-CCc-----ceEEEccCC-CcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 295 CGLKWS----YDNRELASG-GNDNRLFVWNQH-STQ-----PVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 295 ~~l~~s----pd~~~lasg-~~Dg~v~iwd~~-~~~-----~~~~~~~h~-~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
.+++|+ ++++.|+.+ ..++.|.+||.. .++ ....+..+. ..+..++++++|. ++++.. .++.|..
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~--~~~~i~~ 251 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEc--CCCEEEE
Confidence 899999 999765554 567899999986 443 222333343 5688999999986 555443 4789999
Q ss_pred EECCCCceeeeecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 363 WNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 363 wd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
||..+++.+..+... ..+.+++|+++++.|+++ ...++.|..|++..
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 999877776666544 679999999999977664 44567899999764
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.48 E-value=9.1e-13 Score=141.70 Aligned_cols=250 Identities=10% Similarity=-0.000 Sum_probs=166.1
Q ss_pred CcccccCCCCC--CCcceeeeeCCC-CcEEEEEc------CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 011971 155 PYKILDAPALQ--DDFYLNLVDWSS-HNVLAVGL------GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (474)
Q Consensus 155 p~~~l~ap~~~--~d~~v~~l~~s~-~~~la~~~------d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (474)
+..+++...+. ..+.+..+.||| ++.|+.+. +..|++||+.+++......+.. .....++|+|||+.|+.
T Consensus 106 ~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 106 EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEEE
T ss_pred cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEEE
Confidence 34555544332 235688999999 67777543 2489999999998641111111 11268999999999999
Q ss_pred EeCCCc-------------EEEecCCCCe----EEEEecCCCCcEEEEEecC--CEEEEEeCCC----cEEEEECcCCcc
Q 011971 226 GTSHGK-------------VQIWDASRCK----RVRTMEGHRLRVGALAWSS--SLLSSGSRDK----SILQRDIRAQED 282 (474)
Q Consensus 226 gs~dg~-------------I~iwd~~~~~----~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg----~I~iwd~~~~~~ 282 (474)
++.+.. |++|++.++. ++.....|...+..+.|++ .+|+.++.++ .|.++|.....
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~- 263 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD- 263 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-
Confidence 988766 9999998765 4444445667889999984 5676666555 67777654433
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCCcc--eEEEccC--CCcEEEEEECCCCCcEEEEecC
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQP--VLKYCEH--TAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~----Dg~v~iwd~~~~~~--~~~~~~h--~~~V~~l~~sp~~~~ll~sg~G 354 (474)
...+..+...+....| ++|. |+..++ ++.|.+||+.+++. ...+..+ ...+..++|+ +..++++..
T Consensus 264 -~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~- 337 (695)
T 2bkl_A 264 -FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYL- 337 (695)
T ss_dssp -CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEE-
T ss_pred -eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEE-
Confidence 3444555556666666 5666 554443 57899999987753 2333333 4568888888 345777765
Q ss_pred CCCCeEEEEECC-CCceeeeecC--CCCeEEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce
Q 011971 355 TADRCIRFWNTT-TNTHLSCMDT--GSQVCNLVWSKNVNELVSTHG--YSQNQIIVWRYPTMSK 413 (474)
Q Consensus 355 t~d~~I~iwd~~-~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~ 413 (474)
.|+..++|.+. ++.....+.. ...+..+.++++++.++.+.. ...+.|++||+.+++.
T Consensus 338 -~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 -KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp -ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 78887777554 3555555543 345777889999988775422 2357899999988763
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=3.5e-10 Score=107.26 Aligned_cols=235 Identities=10% Similarity=-0.040 Sum_probs=168.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE-EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR-TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
....+.+|++.++|.++++...++.|.+||.. ++... .+..+...+..+++++ .++++...++.|..+|.. +...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 35688999999999977776678999999988 55443 2333446788999873 556655567889999987 4422
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE-EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
..........+.++++.++++++++...++.|..||.. ++... .+......+.++++.+++. ++++.. .++.|..
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~ 171 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN--QNNSIGR 171 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEE
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEec--CCCeEEE
Confidence 22223344679999999999888887778899999987 54432 2333456789999999987 666553 4678999
Q ss_pred EECCCCceeeee--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE-EcCCCccEEEEEECCCCCEEEEE
Q 011971 363 WNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT-LTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 363 wd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
||. +++..... .....+..+++.++++.+++ ....+.|.+|+. +++.... +..+...+.+++++++|.+.++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 55544321 12346889999999876665 446778999998 4443332 33455678999999999877776
Q ss_pred eCCCcEEEEeCC
Q 011971 440 AGDETLRFWNVF 451 (474)
Q Consensus 440 s~Dg~I~iW~l~ 451 (474)
..++.|..|+..
T Consensus 248 ~~~~~i~~~~~~ 259 (300)
T 2qc5_A 248 WGANQIGRITND 259 (300)
T ss_dssp TTTTEEEEECTT
T ss_pred cCCCeEEEECCC
Confidence 677899999873
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1e-11 Score=134.46 Aligned_cols=250 Identities=12% Similarity=-0.016 Sum_probs=165.9
Q ss_pred CcccccCCCCCCC--cceeeeeCCC-CcEEEEEcC------CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 011971 155 PYKILDAPALQDD--FYLNLVDWSS-HNVLAVGLG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (474)
Q Consensus 155 p~~~l~ap~~~~d--~~v~~l~~s~-~~~la~~~d------~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (474)
+..++|...+..+ +.+..+.||| ++.|+.+.+ ..|++||+.+++..... . +...+..++|+|| +.|+.
T Consensus 148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~-~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L-KWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E-EEEESCCCEESTT-SEEEE
T ss_pred CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C-CCceeccEEEECC-CEEEE
Confidence 3445555444333 4788999999 666666542 26999999999886542 1 1122357899999 99998
Q ss_pred EeCCCc--------------EEEecCCCCe----EEEEecCCCCcEEEEEecC--CEEEEEeCCC-----cEEEEECcCC
Q 011971 226 GTSHGK--------------VQIWDASRCK----RVRTMEGHRLRVGALAWSS--SLLSSGSRDK-----SILQRDIRAQ 280 (474)
Q Consensus 226 gs~dg~--------------I~iwd~~~~~----~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg-----~I~iwd~~~~ 280 (474)
++.++. |.+|++.++. .+.....+...+..+.|++ .+|+..+.++ .|.+||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 887654 8899987664 3333333445688999984 5677666443 8999999876
Q ss_pred cce-EeeecCcCCCEEEEEEecCCCEEEEEeCC----CcEEEEECCCC--cceEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 281 EDF-VSKLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 281 ~~~-~~~~~~h~~~V~~l~~spd~~~lasg~~D----g~v~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
... ...+..+...+.... +++|+.|+..+++ +.|.+||+.++ +....+..+...+..++|. +..++++..
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred CCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEE
Confidence 222 344445555555553 4899998888764 45999999874 3333444455566777887 455777765
Q ss_pred CCCCCeEEEEECC-CCceeeeecC--CCCeEEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q 011971 354 GTADRCIRFWNTT-TNTHLSCMDT--GSQVCNLVWSKNVNELVSTH--GYSQNQIIVWRYPTMS 412 (474)
Q Consensus 354 Gt~d~~I~iwd~~-~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~ 412 (474)
.|+..++|.+. ++.....+.. ...+..+.++++++.++.+. ....+.|++||+.+++
T Consensus 382 --~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 382 --HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67776666443 4555555553 45688899999998777542 2345789999998776
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=5e-11 Score=119.49 Aligned_cols=260 Identities=10% Similarity=0.050 Sum_probs=183.8
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEecCCCCeEEEEecCC-------
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT----------SHGKVQIWDASRCKRVRTMEGH------- 249 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs----------~dg~I~iwd~~~~~~~~~~~~h------- 249 (474)
+.|.++|..+++++..+..+. .+ .+.++|||++|+++. .++.|.++|..+.+.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 699999999999999988764 34 899999999988886 3678999999999988877521
Q ss_pred CCcEEEEEec--CCEEEEEeC--CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc
Q 011971 250 RLRVGALAWS--SSLLSSGSR--DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 250 ~~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~ 324 (474)
......+.++ +++|+++.. ++.|.+.|+.+.+ .+..+.-.. . ....|++ ..+++.+.||.+.+.++.+++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 1233456776 467887764 5789999999877 344443211 1 2233433 566777788888888886555
Q ss_pred ceEEE----ccCCCc-EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeEEEEEc
Q 011971 325 PVLKY----CEHTAA-VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMDT-----------GSQVCNLVWS 386 (474)
Q Consensus 325 ~~~~~----~~h~~~-V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~s 386 (474)
..... .....+ ...+.+.+++..++++. ..+.+.+.|+...... ..+.. ......+.++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 44321 111111 12457899988887775 4789999998765422 11110 1122237899
Q ss_pred CCCCeEEEEEec--------CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEe-CCCcEEEEeCCCCCCC
Q 011971 387 KNVNELVSTHGY--------SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGA-GDETLRFWNVFPSPKS 456 (474)
Q Consensus 387 ~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s-~Dg~I~iW~l~~~~~~ 456 (474)
++++.++++... ..+.|.++|..+.+.+..+.... ....++|+|||+ +++++. .++.|.++|+.+....
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 999988886431 23589999999999999886432 478999999999 888887 5999999999988765
Q ss_pred CC
Q 011971 457 QN 458 (474)
Q Consensus 457 ~~ 458 (474)
+.
T Consensus 407 ~t 408 (426)
T 3c75_H 407 RS 408 (426)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=1.1e-10 Score=111.76 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=154.2
Q ss_pred CCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcce-E
Q 011971 208 DDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDF-V 284 (474)
Q Consensus 208 ~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~-~ 284 (474)
..-.-+..|++++ .++++...++.|..||..+++.. .+. ....+.++++++ ..|+.+. ++.|.+||..++... +
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence 3456689999965 45666667889999999877652 232 456789999974 2355554 568999998765421 1
Q ss_pred eeecC--cCCCEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 285 SKLSG--HKSEVCGLKWSYDNRELASGGN-----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 285 ~~~~~--h~~~V~~l~~spd~~~lasg~~-----------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
..... ....+..++++++|+++++... .+.|+.+|.. ++ +..+..+......++|+|+++.++++
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCCCEEEEe
Confidence 11111 1245789999999997665432 2344444443 33 33333444567899999999988887
Q ss_pred ecCCCCCeEEEEEC--CCCcee-----eeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc
Q 011971 352 GGGTADRCIRFWNT--TTNTHL-----SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR 423 (474)
Q Consensus 352 g~Gt~d~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 423 (474)
.. .++.|..||+ .++... ..+. ....+..++++++|+..++ ....+.|.+||..+++.+..+..+...
T Consensus 167 ~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 167 DS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred cC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 65 5789999987 455432 1121 2345788999999977666 556788999999989999999888788
Q ss_pred EEEEEEC-CCCCEEEEEe
Q 011971 424 VLYLAIS-PDGQTIVTGA 440 (474)
Q Consensus 424 V~~l~~s-pdg~~l~t~s 440 (474)
+++++|. ||++.|+.++
T Consensus 243 ~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEESGGGCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEc
Confidence 9999998 8888766544
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=4.8e-10 Score=108.95 Aligned_cols=219 Identities=9% Similarity=-0.033 Sum_probs=151.0
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 210 SVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 210 ~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
...+..|++++ .+++++..++.|.+||..+++... +. ....+.+++|++ ..++.++.+ .|.+||..++.. ..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCE--EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcE--EEE
Confidence 45678899975 456666678899999998876432 32 346799999973 445555554 499999877652 222
Q ss_pred cC-----cCCCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCC
Q 011971 288 SG-----HKSEVCGLKWSYDNRELASGGN------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 288 ~~-----h~~~V~~l~~spd~~~lasg~~------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
.. ....+.+++++++|+++++... .+.|+.+| +++.. .+..+......++|+|+++.++++.. .
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~--~ 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDT--K 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEET--T
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEEC--C
Confidence 11 1235889999999987765542 25677777 45432 33333445789999999987877764 5
Q ss_pred CCeEEEEECC--CC-ce-----eeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEE
Q 011971 357 DRCIRFWNTT--TN-TH-----LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYL 427 (474)
Q Consensus 357 d~~I~iwd~~--~~-~~-----~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 427 (474)
++.|.+||+. ++ .. +..+. ....+..+++.++|+.+++ ....+.|.+|+. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 7899999986 55 32 12222 2345778999999987766 445688999998 677777887777789999
Q ss_pred EEC-CCCCEEEEEeC
Q 011971 428 AIS-PDGQTIVTGAG 441 (474)
Q Consensus 428 ~~s-pdg~~l~t~s~ 441 (474)
+|+ +++..|+.++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88887755443
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=2.7e-11 Score=130.22 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=163.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-----CCcEEEecCCCCeEEEEecCCCCcEEEEEec-CCEEEEEeCCC----------
Q 011971 207 IDDSVCSVGWANRNTHLAVGTS-----HGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDK---------- 270 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~-----dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg---------- 270 (474)
+...+..++|||||++||.+.. ...|++||+++++.+.... +......++|+ ++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 4457888999999999986542 3579999999998654311 11112455675 67788777764
Q ss_pred ---cEEEEECcCCcc---eEeeecC-cCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCCc-ceEEEccCCCcEEE
Q 011971 271 ---SILQRDIRAQED---FVSKLSG-HKSEVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQ-PVLKYCEHTAAVKA 338 (474)
Q Consensus 271 ---~I~iwd~~~~~~---~~~~~~~-h~~~V~~l~~spd~~~lasg~~----Dg~v~iwd~~~~~-~~~~~~~h~~~V~~ 338 (474)
.|++|++.+... .+..... |...+.++.|+|||++|+.... ++.|+++|+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 399999987652 2333333 4556789999999998865432 3589999998764 45566666666655
Q ss_pred EEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCc
Q 011971 339 IAWSPHLHGLLASGGG-TADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMS 412 (474)
Q Consensus 339 l~~sp~~~~ll~sg~G-t~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~ 412 (474)
. |++++..+++.... ...+.|..+|+.++.. ...+.+...+. .|+++++.|+.. ...++ .|.+|++..+
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~-~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE-YMVDATARVEQFDYEGK- 360 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE-EEETTEEEEEEECTTSC-
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE-EEECCeeEEEEEECCCC-
Confidence 5 67777777776541 1246799999988764 23334444444 899999998875 23344 7889998744
Q ss_pred eeEEEc-CCCccEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCC
Q 011971 413 KLATLT-GHTFRVLYLAISPDGQTIVTGAGD----ETLRFWNVFPSP 454 (474)
Q Consensus 413 ~~~~l~-~h~~~V~~l~~spdg~~l~t~s~D----g~I~iW~l~~~~ 454 (474)
....+. .+.+.+..+.+++++..|+....+ ++|+.||+..+.
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 444443 345567788888888877655544 789999987664
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=7e-12 Score=124.06 Aligned_cols=171 Identities=10% Similarity=0.048 Sum_probs=131.7
Q ss_pred cEEEEEec--CCEEEEEeCCCcEEEEECcCCcc---------eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 252 RVGALAWS--SSLLSSGSRDKSILQRDIRAQED---------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 252 ~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+..++++ ..++++|+.++ +.+|++..... .......+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 57778887 47888888885 55598654320 0112234566 999999 89999999 8899999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
++.........|...+.++.+.+.. +++.. .||.|.+||+.++.... ....|.+++|+|+| +++ |..|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~v--g~~d 181 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAV--LLKD 181 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEE--EETT
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEE--EEcC
Confidence 8877666677788889988887652 44433 79999999999887654 34689999999999 555 7789
Q ss_pred CeEEEEECCCCce--eEEE------c---CCCccEEEEEECCCCCEEEEE
Q 011971 401 NQIIVWRYPTMSK--LATL------T---GHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 401 g~I~iwd~~~~~~--~~~l------~---~h~~~V~~l~~spdg~~l~t~ 439 (474)
|.+++|+....+. ..++ . +|...|.+|.|.+++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999998877765 5566 2 478899999999999988863
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=7.3e-11 Score=118.30 Aligned_cols=243 Identities=11% Similarity=0.067 Sum_probs=172.2
Q ss_pred eeeCCC-CcEEEEE-----------cCCeEEEEeCCCCCEEEEEecC-C-----CCCEEEEEEcCCCCEEEEEeC--CCc
Q 011971 172 LVDWSS-HNVLAVG-----------LGNCVYLWNACSSKVTKLCDLG-I-----DDSVCSVGWANRNTHLAVGTS--HGK 231 (474)
Q Consensus 172 ~l~~s~-~~~la~~-----------~d~~V~lwd~~~~~~~~~~~~~-~-----~~~V~~v~~sp~g~~la~gs~--dg~ 231 (474)
.+.+++ ++.|.++ .++.|.++|..++++...+.++ . ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 567777 4434333 2568999999999998887664 1 134567899999999999874 578
Q ss_pred EEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEee----ecCcCCCE-EEEEEecCCCEE
Q 011971 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK----LSGHKSEV-CGLKWSYDNREL 306 (474)
Q Consensus 232 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~h~~~V-~~l~~spd~~~l 306 (474)
|.+.|+.+.+.+..+.-... +.-.......+++.+.||.+.+.+..... .... +.....++ ..+.+.+++..+
T Consensus 202 VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~-v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGE-TKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTC-CEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred EEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCc-EEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 99999999999988864221 11111224677888899999999984443 2211 11111111 235678898888
Q ss_pred EEEeCCCcEEEEECCCCcceE--EEcc----------CCCcEEEEEECCCCCcEEEEecC----C---CCCeEEEEECCC
Q 011971 307 ASGGNDNRLFVWNQHSTQPVL--KYCE----------HTAAVKAIAWSPHLHGLLASGGG----T---ADRCIRFWNTTT 367 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~--~~~~----------h~~~V~~l~~sp~~~~ll~sg~G----t---~d~~I~iwd~~~ 367 (474)
+.....+.|.+.|........ .+.. .......++++|+++.++++... + .++.|.++|+.+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 888888999999987543211 1110 01112237899999988887420 0 135799999999
Q ss_pred CceeeeecCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 368 NTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 368 ~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
.+.+..+..+.....+.|+++++ .++++ ...++.|.|+|..+++.+.++
T Consensus 360 ~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 360 GERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred CeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 99999999888899999999999 77764 446899999999999999887
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=8.5e-10 Score=105.57 Aligned_cols=220 Identities=14% Similarity=0.121 Sum_probs=151.1
Q ss_pred ceeeeeCCC--CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 169 YLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
......|++ +.++.+.. ++.|+.||..+++.. .+. ....+.+++++++|+++ ++. ++.|.+||.++++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT--MDAPVSSVALRQSGGYV-ATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE--CSSCEEEEEEBTTSSEE-EEE-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe--CCCceEEEEECCCCCEE-EEE-CCeEEEEECCCCcEEEE
Confidence 456788887 45666664 679999999988763 332 35689999999999944 454 56799999988765433
Q ss_pred ecC----CCCcEEEEEecC--CEEEEEeC---------CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEE-EE
Q 011971 246 MEG----HRLRVGALAWSS--SLLSSGSR---------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SG 309 (474)
Q Consensus 246 ~~~----h~~~V~~l~~~~--~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-sg 309 (474)
... ....+..+++++ .++++... .....+|.+..... ...+..+.....+++|+|+++.|+ +.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEec
Confidence 321 234688899874 44443322 12334454443332 222333445678999999998764 55
Q ss_pred eCCCcEEEEEC--CCCcc-----eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeE
Q 011971 310 GNDNRLFVWNQ--HSTQP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVC 381 (474)
Q Consensus 310 ~~Dg~v~iwd~--~~~~~-----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~ 381 (474)
+.++.|.+||+ .++.. ...+..+...+..++++++|. ++++.. .++.|..||..+++.+..+... ..+.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE--TTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc--CCCEEEEEcCCCceEEEEEECCCCCce
Confidence 56789999997 44532 222333446788999999986 555543 4678999999999998888865 6799
Q ss_pred EEEEc-CCCCeEEEEEe
Q 011971 382 NLVWS-KNVNELVSTHG 397 (474)
Q Consensus 382 ~l~~s-~~~~~l~~~~g 397 (474)
+++|. |+++.|++++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 89998888654
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.35 E-value=8.7e-10 Score=108.97 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=174.1
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGI--------DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~--------~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
+.+++++.++.|+.+|..+++..-...... ...+.+. ...++..+++++.+|.|..+|..+++.+......
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 556666668899999999999876665532 1223222 2224567888999999999999999988776644
Q ss_pred CCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE-----EEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
..........+..++.++.++.|..+|..+++.. -......... ...... +..++++..++.|..+|..+++
T Consensus 133 ~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 133 GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEE-EEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 3322233345788999999999999999887733 2222211110 112222 4578888889999999999998
Q ss_pred ceEEEccCCCc----EEE---EEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEE
Q 011971 325 PVLKYCEHTAA----VKA---IAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 325 ~~~~~~~h~~~----V~~---l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 395 (474)
.+......... +.. +...| .+..+++.+ .++.|..+|..+++.+....... ...+.. ++..+++
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~- 282 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---YNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYL- 282 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEEC---TTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEE-
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---cCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEE-
Confidence 88776432110 000 00111 123344433 68999999999999887766443 334433 3566666
Q ss_pred EecCCCeEEEEECCCCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 396 HGYSQNQIIVWRYPTMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
+..++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|+++|..++....
T Consensus 283 -~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 283 -VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp -EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 55789999999999998877652 2222223333 35678889999999999998876543
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=3.2e-10 Score=108.93 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=154.5
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 207 IDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
.........|+++|+ +++++..++.|..|+.. ++ ...+..+...+..+++++ .++++...++.|.+|+.. +.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--
Confidence 345678899999998 66677778999999974 44 345555667789999973 555544456789999985 33
Q ss_pred EeeecCc-----CCCEEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCcceEEEccCCCcEEEEEE
Q 011971 284 VSKLSGH-----KSEVCGLKWSYDNRELAS----GGN-------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (474)
Q Consensus 284 ~~~~~~h-----~~~V~~l~~spd~~~las----g~~-------------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (474)
...+..+ ...+..++++++|+++++ |.. .+.|+.||..+++..... .......++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF 195 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence 2222111 134678999999998886 332 256888888766654333 4456788999
Q ss_pred CCCCCcEEEEecCC---CCCeEEEEECCCCcee--eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCcee
Q 011971 342 SPHLHGLLASGGGT---ADRCIRFWNTTTNTHL--SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 414 (474)
Q Consensus 342 sp~~~~ll~sg~Gt---~d~~I~iwd~~~~~~~--~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 414 (474)
+|+++.|+++.... ..+.|..|++..+... ..+. .......++++++|+..++ . .+.|.+|+. .++.+
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~-~~gv~~~~~-~g~~~ 270 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS---S-GTGVCVFDS-DGQLL 270 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC---C-SSEEEEECT-TSCEE
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe---c-CCcEEEECC-CCCEE
Confidence 99998777765310 0378999998765411 1111 2334567899999995444 2 345999997 67777
Q ss_pred EEEcCCCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 415 ATLTGHTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 415 ~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
..+..+. .+..++|+++++.|+.++.++..+
T Consensus 271 ~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 271 GHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7776655 588999999999888887764433
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=7.6e-10 Score=111.13 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=158.7
Q ss_pred ceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg--~I~iwd~~~~~~~~ 244 (474)
....|+|++ ++++++.. ++.|++||..++++..+... ..... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 366788887 56666654 47999999998888776643 22333 99999999999888766 78888877654444
Q ss_pred Ee----cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEee---ecCcCCCE-E-EEEEecC-CCEEEEEeCC
Q 011971 245 TM----EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK---LSGHKSEV-C-GLKWSYD-NRELASGGND 312 (474)
Q Consensus 245 ~~----~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V-~-~l~~spd-~~~lasg~~D 312 (474)
.+ ......+.++++++ ..|+.+..++.|..||.......... ..++...- . .++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456678888875 56666778889999999876522210 12222222 3 9999995 6666666778
Q ss_pred CcEEEEECCCCcceEEEccCC---------------CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-
Q 011971 313 NRLFVWNQHSTQPVLKYCEHT---------------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT- 376 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~h~---------------~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~- 376 (474)
+.|+.|+.... +..+.++. .....+++++++. |+++.. ..++.|+.||+.++........
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~-~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG-FKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET-TTTCEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC-CCCCEEEEEECCCCEEEEEeCCC
Confidence 89999997643 33333322 3478999999988 666642 0378999999887765433322
Q ss_pred --------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 377 --------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 377 --------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
-.....+++++++..+++ ....+.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 135889999999766665 667778877764
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.32 E-value=1.4e-10 Score=123.99 Aligned_cols=278 Identities=11% Similarity=0.055 Sum_probs=187.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC----------CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD----------SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~----------~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.+++++.++.|+-+|+.+|+..-..+..... ....+.+ ++..|++++.|+.|..+|..+++.+..+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 45556666789999999999887666542110 0112333 46688999999999999999999988876
Q ss_pred CC-C----CcEE-EEEecCCEEEEEeC------CCcEEEEECcCCcceEeeecCc-------------------------
Q 011971 248 GH-R----LRVG-ALAWSSSLLSSGSR------DKSILQRDIRAQEDFVSKLSGH------------------------- 290 (474)
Q Consensus 248 ~h-~----~~V~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h------------------------- 290 (474)
.+ . ..+. .....++.++.++. ++.|..+|..+++.........
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~ 235 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence 54 1 1111 11223566666654 6899999999887432221110
Q ss_pred ------CCCEEEEEEecCCCEEEEEeCCC-------------------cEEEEECCCCcceEEEcc--CC-------CcE
Q 011971 291 ------KSEVCGLKWSYDNRELASGGNDN-------------------RLFVWNQHSTQPVLKYCE--HT-------AAV 336 (474)
Q Consensus 291 ------~~~V~~l~~spd~~~lasg~~Dg-------------------~v~iwd~~~~~~~~~~~~--h~-------~~V 336 (474)
......+++++++..++.+..++ .|..+|..+++.+..+.. |. ...
T Consensus 236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p 315 (677)
T 1kb0_A 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM 315 (677)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCc
Confidence 01113577889988998887664 599999999999887753 21 122
Q ss_pred EEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC------------Ce----------------------
Q 011971 337 KAIAWSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGS------------QV---------------------- 380 (474)
Q Consensus 337 ~~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~------------~v---------------------- 380 (474)
..+....+|+ .+++.+. .+|.|+++|..+|+.+..+.... .+
T Consensus 316 ~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 316 ILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp EEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred EEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 2233333553 4566654 89999999999999887665221 01
Q ss_pred --EEEEEcCCCCeEEEEEec-----------------------------------------CCCeEEEEECCCCceeEEE
Q 011971 381 --CNLVWSKNVNELVSTHGY-----------------------------------------SQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 381 --~~l~~s~~~~~l~~~~g~-----------------------------------------~dg~I~iwd~~~~~~~~~l 417 (474)
..++++|+...+++.... ..+.|..||+.+++.+-.+
T Consensus 394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~ 473 (677)
T 1kb0_A 394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (677)
T ss_dssp CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence 146788988888774321 1278999999999988877
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 418 ~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
.. ...+....+..++.+++.++.||.|++||+.+++......
T Consensus 474 ~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 474 EH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 53 3344555566778899999999999999999988655443
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=1.8e-09 Score=106.61 Aligned_cols=260 Identities=12% Similarity=-0.007 Sum_probs=169.9
Q ss_pred eCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcE
Q 011971 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV 253 (474)
Q Consensus 174 ~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V 253 (474)
....+.+++++.++.|+.+|..+++..-....... ........ +..+++++.+|.|..+|..+++.+..........
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 33456777777889999999999998766654321 11111222 4578889999999999999999887765432211
Q ss_pred -----EEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcC-C--CEEE---EEEec--CCCEEEEEeCCCcEEEEEC
Q 011971 254 -----GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-S--EVCG---LKWSY--DNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 254 -----~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~--~V~~---l~~sp--d~~~lasg~~Dg~v~iwd~ 320 (474)
......+..++.++.++.|..+|..+++.....-.... . ++.. +...| .+..++.++.++.|..+|.
T Consensus 177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp --CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred eecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 22233467888899999999999988774322211110 0 0000 00111 3567888888999999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C-CCeEEEEEcCCCCeEEEEEec
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-G-SQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~-~~v~~l~~s~~~~~l~~~~g~ 398 (474)
.+++.+..... .....+... +..+++.. .++.|..+|..+++.+..... . ..+..... .+..|++ +.
T Consensus 257 ~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v--~~ 325 (376)
T 3q7m_A 257 RSGQIMWKREL--GSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV--GD 325 (376)
T ss_dssp TTCCEEEEECC--CCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE--EC
T ss_pred CCCcEEeeccC--CCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE--Ee
Confidence 99988876643 234444443 44455544 588999999999998876652 1 22222222 2466777 66
Q ss_pred CCCeEEEEECCCCceeEEEcCCCccEEE-EEECCCCCEEEEEeCCCcEEEEe
Q 011971 399 SQNQIIVWRYPTMSKLATLTGHTFRVLY-LAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 399 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
.+|.|.++|..+++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 8899999999999988877653333322 222 245788899999999987
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=8e-09 Score=100.21 Aligned_cols=214 Identities=12% Similarity=0.039 Sum_probs=144.3
Q ss_pred eeeeeCCC--CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.....|++ +.++.++. ++.|++||..+++... +. ....+.+++|+++|+++++ +.+| |.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEE-ECCC-EEEEECCCCcEEEEe
Confidence 46778887 45666664 6799999998876543 32 2468999999999986665 4444 999999887754333
Q ss_pred cC----CCCcEEEEEecC--CEEEEEeC------CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEE-eCCC
Q 011971 247 EG----HRLRVGALAWSS--SLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDN 313 (474)
Q Consensus 247 ~~----h~~~V~~l~~~~--~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg-~~Dg 313 (474)
.. ....+.++++++ .++++... .+.|..++ .+. ...+..+.....+++|+++++.|+.+ ..++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 124688999984 44444332 24555555 322 22333334567899999999876554 4578
Q ss_pred cEEEEECC--CC-cc-----eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-CeEEEE
Q 011971 314 RLFVWNQH--ST-QP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLV 384 (474)
Q Consensus 314 ~v~iwd~~--~~-~~-----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-~v~~l~ 384 (474)
.|.+||+. ++ .. ...+......+..++++++|. ++++.. .++.|..||. +++.+..+.... .+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~--~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGAVDRYDT-DGNHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEe--CCCEEEEECC-CCCEEEEEECCCCCcEEEE
Confidence 99999986 55 32 222333445678999999987 444432 3678999998 577777666544 699999
Q ss_pred Ec-CCCCeEEEEE
Q 011971 385 WS-KNVNELVSTH 396 (474)
Q Consensus 385 ~s-~~~~~l~~~~ 396 (474)
|+ ++++.|++++
T Consensus 278 f~g~d~~~L~vt~ 290 (326)
T 2ghs_A 278 FIGPDASRLLVTS 290 (326)
T ss_dssp EESTTSCEEEEEE
T ss_pred EecCCCCEEEEEe
Confidence 98 8888887753
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=5.2e-10 Score=119.80 Aligned_cols=279 Identities=12% Similarity=0.081 Sum_probs=183.5
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC---------CE-EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---------SV-CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~---------~V-~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.+++++.++.|+-+|+.+|+..-..+..... .+ ..+.. .+..|++++.||.|..+|..+++.+..+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 45566666789999999999987766542211 00 11222 35688899999999999999999887765
Q ss_pred CC--CC---cEE-EEEecCCEEEEEe------CCCcEEEEECcCCcceEeeecC--------------------------
Q 011971 248 GH--RL---RVG-ALAWSSSLLSSGS------RDKSILQRDIRAQEDFVSKLSG-------------------------- 289 (474)
Q Consensus 248 ~h--~~---~V~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~-------------------------- 289 (474)
.. .. .+. +.....+.++.++ .+|.|..||..+++........
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~ 228 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV 228 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence 42 11 111 1112245565554 3689999999988743222110
Q ss_pred ----cCCCEEEEEEecCCCEEEEEeCCCc-------------------EEEEECCCCcceEEEcc--CC-------CcEE
Q 011971 290 ----HKSEVCGLKWSYDNRELASGGNDNR-------------------LFVWNQHSTQPVLKYCE--HT-------AAVK 337 (474)
Q Consensus 290 ----h~~~V~~l~~spd~~~lasg~~Dg~-------------------v~iwd~~~~~~~~~~~~--h~-------~~V~ 337 (474)
+......+++++++..++.+..++. |..||..+++.+..+.. |. .++.
T Consensus 229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~ 308 (689)
T 1yiq_A 229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMI 308 (689)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcE
Confidence 0011125778898889999887764 99999999999888764 21 1122
Q ss_pred EEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC-------------------------------------
Q 011971 338 AIAWSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGS------------------------------------- 378 (474)
Q Consensus 338 ~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~------------------------------------- 378 (474)
......+|. .+++.+. .+|.++++|..+|+.+.......
T Consensus 309 l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 309 LAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred EEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 222222343 2455544 89999999999999874432211
Q ss_pred ---CeEEEEEcCCCCeEEEEEec-------------------------------------------CCCeEEEEECCCCc
Q 011971 379 ---QVCNLVWSKNVNELVSTHGY-------------------------------------------SQNQIIVWRYPTMS 412 (474)
Q Consensus 379 ---~v~~l~~s~~~~~l~~~~g~-------------------------------------------~dg~I~iwd~~~~~ 412 (474)
.-..++++|+...+++.... .+|.|..||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 01126788888877764221 03789999999999
Q ss_pred eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 413 KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
.+-.+..+.. +..-.+...|.+|+.|+.||.|+.||..+++.......
T Consensus 467 ~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 467 AAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 9888765432 33335566788999999999999999999987654433
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=1.6e-08 Score=100.62 Aligned_cols=251 Identities=15% Similarity=0.138 Sum_probs=165.7
Q ss_pred eEEEEeCCC-----CCEEEEEecCCC-CCEEEEEE-----------c--CCCCEEEEEe-CCCcEEEecCCCC----eEE
Q 011971 188 CVYLWNACS-----SKVTKLCDLGID-DSVCSVGW-----------A--NRNTHLAVGT-SHGKVQIWDASRC----KRV 243 (474)
Q Consensus 188 ~V~lwd~~~-----~~~~~~~~~~~~-~~V~~v~~-----------s--p~g~~la~gs-~dg~I~iwd~~~~----~~~ 243 (474)
.|.+-|+.. ++++..+.+.+. +....+.| + .++++|++.+ .++.|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 566667765 778777776543 35556666 6 7788777654 5788999999765 677
Q ss_pred EEec------C-CCCcEEEEEecC-CEEEEEeCC------CcEEEEECcCCcceEeeecCc--C-CCEEEEEEecCCCEE
Q 011971 244 RTME------G-HRLRVGALAWSS-SLLSSGSRD------KSILQRDIRAQEDFVSKLSGH--K-SEVCGLKWSYDNREL 306 (474)
Q Consensus 244 ~~~~------~-h~~~V~~l~~~~-~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h--~-~~V~~l~~spd~~~l 306 (474)
++++ . .......+...+ .+++++..+ |.|.++|..+.+ .+..+... . ..-..+-|+|+++.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe-EEEEEccCCCCccccceEEECCCCCEE
Confidence 7773 1 111334445543 366655555 789999998877 45555422 1 223457889999988
Q ss_pred EEEe-------------------CCCcEEEEECCCCcceEEEccC--CCcEEEEEE--CCCCCcEEEEec---CCCCCeE
Q 011971 307 ASGG-------------------NDNRLFVWNQHSTQPVLKYCEH--TAAVKAIAW--SPHLHGLLASGG---GTADRCI 360 (474)
Q Consensus 307 asg~-------------------~Dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~--sp~~~~ll~sg~---Gt~d~~I 360 (474)
++.. .+.+|.+||+.+++.+.++... ......+.| +|+++..++++. ...+++|
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 8875 3689999999998888777542 123445555 999997777651 0025677
Q ss_pred EEEECCCCce--eeee--cC-----------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceeEE
Q 011971 361 RFWNTTTNTH--LSCM--DT-----------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT---MSKLAT 416 (474)
Q Consensus 361 ~iwd~~~~~~--~~~~--~~-----------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---~~~~~~ 416 (474)
.+|....+.. ...+ .. +.....+.+++|+++|+++ ....+.|.+||+.. .+.+..
T Consensus 283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg~d~VavfdV~d~~~~~lv~~ 361 (462)
T 2ece_A 283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWGIGEVRQYDISNPFKPVLTGK 361 (462)
T ss_dssp EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETTTTEEEEEECSSTTSCEEEEE
T ss_pred EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEEEE
Confidence 6655443321 1111 10 3457889999999999997 44678999999852 345555
Q ss_pred EcCCC--------------ccEEEEEECCCCCEEEEEe
Q 011971 417 LTGHT--------------FRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 417 l~~h~--------------~~V~~l~~spdg~~l~t~s 440 (474)
+.... +.-..++++|||++|+++.
T Consensus 362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 43220 1247799999999999887
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=2e-09 Score=115.07 Aligned_cols=273 Identities=10% Similarity=0.051 Sum_probs=182.9
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecC-CC---CCEEE-EEEcCCCCEEEEEeC------CCcEEEecCCCCeEEEE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLG-ID---DSVCS-VGWANRNTHLAVGTS------HGKVQIWDASRCKRVRT 245 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~-~~---~~V~~-v~~sp~g~~la~gs~------dg~I~iwd~~~~~~~~~ 245 (474)
.+.+++++.++.|+.+|+.+|+..-..... .. ..+.+ ... .+..+++++. +|.|..||..+++.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 456666677999999999999998777653 10 11211 111 2455666654 68999999999999887
Q ss_pred ecCCCCc--------------------------------EEEEEec--CCEEEEEeCCC-------------------cE
Q 011971 246 MEGHRLR--------------------------------VGALAWS--SSLLSSGSRDK-------------------SI 272 (474)
Q Consensus 246 ~~~h~~~--------------------------------V~~l~~~--~~~l~sgs~dg-------------------~I 272 (474)
+...... ...++++ .+.++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7532211 0134554 47788777664 49
Q ss_pred EEEECcCCcceEee-ecCcC-------CCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCcceEEEccCCC-------
Q 011971 273 LQRDIRAQEDFVSK-LSGHK-------SEVCGLKWSYDN---RELASGGNDNRLFVWNQHSTQPVLKYCEHTA------- 334 (474)
Q Consensus 273 ~iwd~~~~~~~~~~-~~~h~-------~~V~~l~~spd~---~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~------- 334 (474)
..+|..+++..... ...|. ....-+....+| ..++.++.+|.|+++|..+++.+..+.....
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 99999988743222 22221 222333444477 6899999999999999999998876642210
Q ss_pred ----cE------------------------EEEEECCCCCcEEEEec--------------C------------------
Q 011971 335 ----AV------------------------KAIAWSPHLHGLLASGG--------------G------------------ 354 (474)
Q Consensus 335 ----~V------------------------~~l~~sp~~~~ll~sg~--------------G------------------ 354 (474)
++ ..++++|+...+++... |
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 11 14678888775554321 0
Q ss_pred --------CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC-ccEE
Q 011971 355 --------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT-FRVL 425 (474)
Q Consensus 355 --------t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~ 425 (474)
...+.|..||+.+++.+..+..+..+....+...+..+++ +..++.+++||..+++.+..+.... ....
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 0127899999999999998887766666667777888877 7799999999999999999987433 2223
Q ss_pred EEEECCCCCEE-EEEeC----------------CCcEEEEeCCCC
Q 011971 426 YLAISPDGQTI-VTGAG----------------DETLRFWNVFPS 453 (474)
Q Consensus 426 ~l~~spdg~~l-~t~s~----------------Dg~I~iW~l~~~ 453 (474)
-+.|..+|+.+ ++.+. .+.|.+|.+...
T Consensus 524 p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~ 568 (677)
T 1kb0_A 524 PSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK 568 (677)
T ss_dssp CEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred CEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence 35566788744 44333 468889998743
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=2.6e-10 Score=112.35 Aligned_cols=253 Identities=10% Similarity=-0.040 Sum_probs=170.8
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEecCCCCeEEEEecCC-------C
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT----------SHGKVQIWDASRCKRVRTMEGH-------R 250 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs----------~dg~I~iwd~~~~~~~~~~~~h-------~ 250 (474)
.|.++|..+++++..+..+.. + .+.++|||++++++. .++.|.+||..+++.+.++..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 899999999999999887654 4 799999999999886 3678999999999999998633 1
Q ss_pred CcEEEEEec--CCEEEEEeC--CCcEEE--EECcCCcceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCC-
Q 011971 251 LRVGALAWS--SSLLSSGSR--DKSILQ--RDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHS- 322 (474)
Q Consensus 251 ~~V~~l~~~--~~~l~sgs~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~- 322 (474)
.....++++ +++++++.. +..|.+ +|..+ +..+.. .+. +.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 234567776 467777764 456888 88876 222211 111 1123444 3455667788888899876
Q ss_pred ----CcceEE----EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCC-----------CCeE
Q 011971 323 ----TQPVLK----YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDTG-----------SQVC 381 (474)
Q Consensus 323 ----~~~~~~----~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~~~-----------~~v~ 381 (474)
++.... +.-...+. + .+++..++.+. . +.+.+.|+.+.. .+..+... ....
T Consensus 196 ~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 196 PAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 332211 11112233 3 55566555543 5 889999986542 22322211 1122
Q ss_pred EEEEcCCCCeEEEEEe-c-C-----CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEe-CCCcEEEEeCCC
Q 011971 382 NLVWSKNVNELVSTHG-Y-S-----QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGA-GDETLRFWNVFP 452 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g-~-~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s-~Dg~I~iW~l~~ 452 (474)
.+.++++++.++++.. . . .+.+.++|..+.+.+..+.... ....++|+|||+ .+++.. .+++|.++|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2689999999988533 2 2 2356699999999988886543 588999999998 556666 599999999998
Q ss_pred CCCCCCCC
Q 011971 453 SPKSQNTD 460 (474)
Q Consensus 453 ~~~~~~~~ 460 (474)
.+..+...
T Consensus 347 ~kvv~~I~ 354 (368)
T 1mda_H 347 DQDQSSVE 354 (368)
T ss_dssp CEEEEECC
T ss_pred CcEEEEEE
Confidence 87655444
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1.2e-09 Score=116.96 Aligned_cols=262 Identities=14% Similarity=0.093 Sum_probs=168.9
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecC-CCCCEEEEEEcC--CCCEEEEEeC------CCcEEEecCCCCeEEEEec
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~-~~~~V~~v~~sp--~g~~la~gs~------dg~I~iwd~~~~~~~~~~~ 247 (474)
.+.+++.+.++.|+.+|+.+|+..-..... +......+..+| .+..+++++. +|.|..||..+++.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 355666667999999999999987666543 211111111112 1334555542 6899999999999887764
Q ss_pred CC--C-C----------------------------cEEEEEec--CCEEEEEeCCCc-------------------EEEE
Q 011971 248 GH--R-L----------------------------RVGALAWS--SSLLSSGSRDKS-------------------ILQR 275 (474)
Q Consensus 248 ~h--~-~----------------------------~V~~l~~~--~~~l~sgs~dg~-------------------I~iw 275 (474)
.. . . ....++++ .++++.+..++. |..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 0 0 01135554 478888887764 9999
Q ss_pred ECcCCcceEeee-cCcC-------CCEEEEEEecCCC---EEEEEeCCCcEEEEECCCCcceEEEccCC-C---------
Q 011971 276 DIRAQEDFVSKL-SGHK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT-A--------- 334 (474)
Q Consensus 276 d~~~~~~~~~~~-~~h~-------~~V~~l~~spd~~---~lasg~~Dg~v~iwd~~~~~~~~~~~~h~-~--------- 334 (474)
|..+++.....- ..|. ..+.......+|+ .++.++.+|.++++|..+++.+....... .
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 999987433221 1121 2222223333565 78899999999999999999875432111 0
Q ss_pred -----------------------------cEEEEEECCCCCcEEEEec------------------------C-------
Q 011971 335 -----------------------------AVKAIAWSPHLHGLLASGG------------------------G------- 354 (474)
Q Consensus 335 -----------------------------~V~~l~~sp~~~~ll~sg~------------------------G------- 354 (474)
.-..++++|+...+++... |
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0112678887664444311 0
Q ss_pred -----------CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc
Q 011971 355 -----------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR 423 (474)
Q Consensus 355 -----------t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 423 (474)
..++.|..||+.+++.+..+..+.....-.+...+..+++ |+.|+.|+.||..+++.+.++....+.
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~~~~~~ 518 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQPAASGV 518 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeeeCCCCc
Confidence 0147899999999999988887666555566667777777 789999999999999999988754322
Q ss_pred -EEEEEECCCCCE-EEEEe
Q 011971 424 -VLYLAISPDGQT-IVTGA 440 (474)
Q Consensus 424 -V~~l~~spdg~~-l~t~s 440 (474)
..-+.|..||+. +++.+
T Consensus 519 ~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 519 MAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred ccCceEEEECCEEEEEEEe
Confidence 233566778874 44443
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.22 E-value=3e-08 Score=93.01 Aligned_cols=247 Identities=7% Similarity=-0.015 Sum_probs=162.7
Q ss_pred EEEEEcCCeEEEEeCCCCCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCCeEEEEecCCCCcE
Q 011971 180 VLAVGLGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRV 253 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~~~~~~~~~h~~~V 253 (474)
+|..+..+.|+.+++...... ..+.. ....+.+++|++++..|+++. .++.|.+++.........+.......
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 445555568999998765432 12211 124578999999766666554 46799999987665444443333567
Q ss_pred EEEEecC--CE-EEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCcceE
Q 011971 254 GALAWSS--SL-LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPVL 327 (474)
Q Consensus 254 ~~l~~~~--~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~---Dg~v~iwd~~~~~~~~ 327 (474)
..+++++ .. +++-...+.|.++++..... ............+++++|++..|..+.. .+.|..+++.... ..
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 8888863 44 44555677899999875432 1122222256789999997666655543 3689888886433 23
Q ss_pred EE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 328 KY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 328 ~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
.+ .........+++++++..|+++.. ..+.|..+|.........+........++.. +..|+++ ....+.|.++
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~~ 234 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAM 234 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEEE
Confidence 33 233356789999999888888875 5789999999765444444444456677654 5666664 5567899999
Q ss_pred ECCCCceeEEEcCCC-ccEEEEEECCCCC
Q 011971 407 RYPTMSKLATLTGHT-FRVLYLAISPDGQ 434 (474)
Q Consensus 407 d~~~~~~~~~l~~h~-~~V~~l~~spdg~ 434 (474)
|..+++.+..+.... .....+++.|++.
T Consensus 235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCCCCceEEEccccccccceeeecCccC
Confidence 999999888886443 2467788888765
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=1.2e-09 Score=117.21 Aligned_cols=249 Identities=14% Similarity=0.087 Sum_probs=165.3
Q ss_pred cccccCCCCC--CCcceeeeeCCC-CcEEEEEcC------CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 011971 156 YKILDAPALQ--DDFYLNLVDWSS-HNVLAVGLG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 156 ~~~l~ap~~~--~d~~v~~l~~s~-~~~la~~~d------~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (474)
..+||...+. ..+.+..+.||| ++.|+.+.+ ..|++||+.+++..... +. ......++|+ ||+.|+.+
T Consensus 115 ~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~-~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 115 EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK-DVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE-EEESCCCEEE-TTTEEEEE
T ss_pred EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC-CceeccEEEe-CCCEEEEE
Confidence 4455543332 334678889999 677775531 37999999999976542 11 1113578999 99999999
Q ss_pred eCCCc-------------EEEecCCCCe----EEEEecC-CCCcEEEEEecC--CEEE-EEeC---CCcEEEEECcCCcc
Q 011971 227 TSHGK-------------VQIWDASRCK----RVRTMEG-HRLRVGALAWSS--SLLS-SGSR---DKSILQRDIRAQED 282 (474)
Q Consensus 227 s~dg~-------------I~iwd~~~~~----~~~~~~~-h~~~V~~l~~~~--~~l~-sgs~---dg~I~iwd~~~~~~ 282 (474)
+.+.. |.+|++.+.. ++..... |...+..+.|++ .+|+ +.+. +..|.++|+.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 87743 9999987654 3333334 556678889984 5554 3332 35899999987653
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeC-C---CcEEEEECCCCcc--eEEEccCCCcEEEEEECCCCCcEEEEecCCC
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGN-D---NRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~-D---g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
....+..+....... |++++..|+..++ + +.|.++|+.++.. ...+..|...+. .|++++..|+++.. .
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~--~ 346 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM--V 346 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE--E
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE--E
Confidence 345555666665555 6677766665544 2 5799999988754 345656666555 88999988877764 4
Q ss_pred CC--eEEEEECCCCceeeeec--CCCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q 011971 357 DR--CIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGY--SQNQIIVWRYPTMSK 413 (474)
Q Consensus 357 d~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~ 413 (474)
++ .|++||+..+ ....+. ....+..+.++++++.++....+ .-+.|..||+.+++.
T Consensus 347 ~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 347 DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 44 6899998754 444444 33457777888899888774322 237899999877653
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.21 E-value=3.7e-09 Score=103.34 Aligned_cols=231 Identities=9% Similarity=-0.065 Sum_probs=151.0
Q ss_pred CCEEEEEEcCCCCEEEEEeC--CCcEEEecCCCCeEEEEe-------cCCCCcEEEEEecC-CEEEEEeC------CCcE
Q 011971 209 DSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVRTM-------EGHRLRVGALAWSS-SLLSSGSR------DKSI 272 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~--dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~~~-~~l~sgs~------dg~I 272 (474)
..+..|+++++|+++++... ++.++||.+.+++. ..+ ..|-..+..+++++ ..|..... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 68999999999998887642 34355555545543 322 13556899999985 44555443 5789
Q ss_pred EEEECcCCcceEeeecC------cCCCEEEEEEecCCCEE-EEEe---CCCcEEEEECCCCcceEEEccCC---------
Q 011971 273 LQRDIRAQEDFVSKLSG------HKSEVCGLKWSYDNREL-ASGG---NDNRLFVWNQHSTQPVLKYCEHT--------- 333 (474)
Q Consensus 273 ~iwd~~~~~~~~~~~~~------h~~~V~~l~~spd~~~l-asg~---~Dg~v~iwd~~~~~~~~~~~~h~--------- 333 (474)
.+||+.+++ .+..+.. +...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999998765 2333321 23457899999865454 5544 57899999998877655443321
Q ss_pred --------------------CcEEEEEECCCCCcEEEEecCCCCCeEEEEECC---CCc-----e---eeeecCCCCeEE
Q 011971 334 --------------------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT---TNT-----H---LSCMDTGSQVCN 382 (474)
Q Consensus 334 --------------------~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~---~~~-----~---~~~~~~~~~v~~ 382 (474)
..+..|+|+|+++.|+++.. ....|..++.. .+. . +...........
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 23688999999987777653 34466665532 111 0 111122335677
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 383 LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
++++++|+.+++ ...++.|.+||..+++....... +...+..++|.++|.++++.+..+.+
T Consensus 253 ia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 253 ISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 999999987777 67889999999855654333222 24568999999999888887755443
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.19 E-value=1e-09 Score=105.86 Aligned_cols=264 Identities=11% Similarity=0.058 Sum_probs=172.3
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
+..+....+..|.++..+ |+.+|. +++........ ........+. +..|.+|+.++.|..+|.. ++.......+
T Consensus 62 ~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp EECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred ccceEEecCCcEEEecCc-EEEECC-CCcEEEEEECC-CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 344445544445555555 899986 55443322211 1122223333 5568889889999999988 7777666655
Q ss_pred CCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE
Q 011971 250 RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 250 ~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~ 328 (474)
...+.++... ...+..++.++.|..+|.. +. ....+......+.++...+++..++ ++ +.|..+| .+++....
T Consensus 136 ~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~ 209 (330)
T 3hxj_A 136 KAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN 209 (330)
T ss_dssp SCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE
T ss_pred CceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE
Confidence 5556666665 5678889999999999988 44 3444444455667777777776444 44 8899999 77777777
Q ss_pred EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC-eEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-VCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
+......+.++...+++. +++.. .++.|..+|. ++..+..+..... +..+...+++. |.+ +..++.|..+|
T Consensus 210 ~~~~~~~~~~~~~~~~g~-l~v~t---~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~ggl~~~d 281 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDGT-IYVTS---LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYF--GSYDGHLYAIN 281 (330)
T ss_dssp ECCSSCCCSCCEECTTSC-EEEEE---TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTCEEEEEC
T ss_pred EccCCcceeceEECCCCe-EEEEc---CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEE--ecCCCCEEEEC
Confidence 766667788889988875 55533 5788888874 5666655554333 34455555554 555 55788999999
Q ss_pred CCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 408 YPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
. +++.+..+......+.++...++|. |..++.+|.+++......+.
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 5 7777777765566677788878876 55688999999988765543
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=9.1e-10 Score=108.46 Aligned_cols=249 Identities=8% Similarity=-0.036 Sum_probs=165.8
Q ss_pred eeeCCC-CcEEEEEc-----------CCeEEEEeCCCCCEEEEEecCC------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 011971 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLGI------DDSVCSVGWANRNTHLAVGTS--HGK 231 (474)
Q Consensus 172 ~l~~s~-~~~la~~~-----------d~~V~lwd~~~~~~~~~~~~~~------~~~V~~v~~sp~g~~la~gs~--dg~ 231 (474)
.+.+++ +..+.++. ++.|.+||..+++....+.++. ......+.++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 566676 34444442 5789999999999999887641 124567999999999999875 457
Q ss_pred EEE--ecCCCCeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcC----CcceEe----eecCcCCCEEEEEEe
Q 011971 232 VQI--WDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRA----QEDFVS----KLSGHKSEVCGLKWS 300 (474)
Q Consensus 232 I~i--wd~~~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~----~~~~~~----~~~~h~~~V~~l~~s 300 (474)
|.+ +|..+ +..+.... . ..+... ...+++.+.||.+.+.|+.. ...... .+.-...+. . .
T Consensus 149 v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 44443111 1 112222 35667778899999999876 221211 111112333 3 6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcc--eEEEcc-------C---CCcEEEEEECCCCCcEEEEecCC-C-----CCeEEE
Q 011971 301 YDNRELASGGNDNRLFVWNQHSTQP--VLKYCE-------H---TAAVKAIAWSPHLHGLLASGGGT-A-----DRCIRF 362 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~~~~--~~~~~~-------h---~~~V~~l~~sp~~~~ll~sg~Gt-~-----d~~I~i 362 (474)
+++..++..+. +.|.+.|+..... +..+.. + ......++++|+++.++++.... . +..+.+
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 67777777777 9999999875432 211210 0 11112278999999888764200 0 234669
Q ss_pred EECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC
Q 011971 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 363 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 431 (474)
+|+.+++.+..+..+.....+.|+++++.++++.+..++.|.++|+.+++.+.++..... ...+++.+
T Consensus 299 iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 299 VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 999999999999888889999999999977776443689999999999999999875543 34555543
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=7.8e-09 Score=99.16 Aligned_cols=223 Identities=12% Similarity=0.100 Sum_probs=147.9
Q ss_pred ceeeeeCCC-Cc-EEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 169 YLNLVDWSS-HN-VLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
......|++ ++ ++.++. ++.|+.|+. +++..... .+...+.+++++++|+++++...++.|.+|+.. ++....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 456788987 55 566664 679999998 55544333 345678999999999966665556789999986 543322
Q ss_pred ec---C-CCCcEEEEEecC--CEEEE----EeC-------------CCcEEEEECcCCcceEeeecCcCCCEEEEEEecC
Q 011971 246 ME---G-HRLRVGALAWSS--SLLSS----GSR-------------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 246 ~~---~-h~~~V~~l~~~~--~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (474)
.. + ....+.++++++ .++++ |.. .+.|..+|..++.. .. +. ......+++|+||
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~-~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QR-MA-DLDHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EE-EE-EESSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EE-Ee-cCCCCcceEEcCC
Confidence 21 1 113456788873 55554 332 25677777755542 22 22 4456789999999
Q ss_pred CCEEEEEeCC------CcEEEEECCCCcce--EEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011971 303 NRELASGGND------NRLFVWNQHSTQPV--LKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (474)
Q Consensus 303 ~~~lasg~~D------g~v~iwd~~~~~~~--~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~ 373 (474)
++.|+.+... +.|++||+..+... ..+ .........++++++|. ++++. .+.|.+||. .++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~----~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS----GTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC----SSEEEEECT-TSCEEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec----CCcEEEECC-CCCEEEE
Confidence 9988777665 78999998765411 111 11234456789999988 55543 234999998 5777777
Q ss_pred ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 374 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
+.....+.+++|+++++.|++++ . +.+..++
T Consensus 273 ~~~~~~~~~~~f~~d~~~L~it~--~-~~l~~~~ 303 (305)
T 3dr2_A 273 IPTPGTASNCTFDQAQQRLFITG--G-PCLWMLP 303 (305)
T ss_dssp EECSSCCCEEEECTTSCEEEEEE--T-TEEEEEE
T ss_pred EECCCceeEEEEeCCCCEEEEEc--C-CeEEEEE
Confidence 77666799999999999888842 3 3444444
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=3.5e-08 Score=92.22 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=145.4
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEecCCCCeEEEEecC-CCCcEEEEEecCCEEE-EEeCCCcE
Q 011971 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEG-HRLRVGALAWSSSLLS-SGSRDKSI 272 (474)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~---dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~~~l~-sgs~dg~I 272 (474)
+++..+.++.......+.|++++ .|++++. ++.|.++|+.+++.+..+.- .......+++.++.|+ +.-.++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 44555544333457899999986 4555543 57999999999999988752 2223345677765554 44567899
Q ss_pred EEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCC-----CcEEEEEECCCCCc
Q 011971 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT-----AAVKAIAWSPHLHG 347 (474)
Q Consensus 273 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~ 347 (474)
.++|..+.+ .+..+...... +..+++|++.|+++..++.|.++|..+.+.+..+.-.. ..+..+.|. ++ .
T Consensus 89 ~viD~~t~~-v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 89 FIYDRRTLS-NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEETTTTE-EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEECCCCc-EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 999998776 34444322122 23355688877777778999999999988877765321 236788888 55 5
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 411 (474)
+++... .++.|.+.|..+++.+..+... .....++|+++++.++++ +...+.|.+.++...
T Consensus 164 lyvn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred EEEecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 777654 5789999999999999888753 356899999999988887 667788888887543
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=5.4e-11 Score=117.87 Aligned_cols=202 Identities=14% Similarity=0.038 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEe--cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCC-CEE
Q 011971 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW--SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-EVC 295 (474)
Q Consensus 219 ~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 295 (474)
++..+++++.||.|..||..+++.+..+.. ..+.+..+ .+..+++++.||.|+.||..+++.. ..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-TKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-EECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-eeeeccCccccc
Confidence 577899999999999999999999888775 33333222 2457777789999999999877632 22222211 010
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 296 -GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 296 -~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
+..+. ++..+++|+.|+.|+.||..+++.+..+..+. ...++|++..+++.+ .|+.|+.||..+|+.+..+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~---~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR---TEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEE---EEEEEECCCSSSSSCCCEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe---cCCEEEEEECCCCCEEEeE
Confidence 00111 34577888889999999999999888776543 245567666555543 6899999999999887665
Q ss_pred cCCCCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC
Q 011971 375 DTGSQVCNLVWSKNV---NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ 434 (474)
Q Consensus 375 ~~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 434 (474)
.... .....+..+. ..+++ +..+|.|..||..+++.+..+......+...+++++|.
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 157 TYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred eccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 4221 1222233332 45666 66899999999999998887764333233345566664
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=6.7e-11 Score=117.16 Aligned_cols=258 Identities=11% Similarity=0.025 Sum_probs=142.7
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCc-E-E
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-V-G 254 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~-V-~ 254 (474)
.+.+++++.++.|+.||+.+|+..-.... +.+.+..+..++..+++++.||.|..||.++++.+..+..+... + .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 35566677789999999999998877654 45555556667878888889999999999988877666543211 1 0
Q ss_pred EEEe-cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCC
Q 011971 255 ALAW-SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (474)
Q Consensus 255 ~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~ 333 (474)
+... .+..+++|+.++.|+.||..+++. +..+..+. ...++|++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 1111 356788889999999999998873 33333332 23456788899999999999999999998876654221
Q ss_pred CcEEEEEECCCC---CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE-EEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 334 AAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 334 ~~V~~l~~sp~~---~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
....++..+. ..+++.. .|+.|..||..+|+.+......+.+.. ..++.++...+......++.++.+|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEEC---CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehh
Confidence 1223334322 3455533 699999999999999988887777654 334445532111000012344455554
Q ss_pred CCc----eeEEEcCCCccEEEEEECC--CCCEEEEEeCCCcEEEEeCCC
Q 011971 410 TMS----KLATLTGHTFRVLYLAISP--DGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 410 ~~~----~~~~l~~h~~~V~~l~~sp--dg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+++ .+..+... ..+. +| .+..|+.++.||.|+.++...
T Consensus 236 tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEEE
T ss_pred cCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCccc
Confidence 444 22222110 1110 12 234677788888888887763
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=3.3e-09 Score=109.05 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=174.3
Q ss_pred cEEEEEc--CCeEEEEeCCCCCEEEEEecCCCCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEEec
Q 011971 179 NVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGW-A-NRNTHLAVGT------------------SHGKVQIWD 236 (474)
Q Consensus 179 ~~la~~~--d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~-s-p~g~~la~gs------------------~dg~I~iwd 236 (474)
..|.+.. ++.|.+.|+.+.++.+++++.....+..+++ + |++.++++++ .++.|.++|
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 3444443 4589999999999999887766667899998 5 9999999885 245799999
Q ss_pred CCCCeEEEEecCCCCcEEEEEe--cCCEEEEEeCCC---------------cEEEEECcCCcceEeeecCcCCCEEEEEE
Q 011971 237 ASRCKRVRTMEGHRLRVGALAW--SSSLLSSGSRDK---------------SILQRDIRAQEDFVSKLSGHKSEVCGLKW 299 (474)
Q Consensus 237 ~~~~~~~~~~~~h~~~V~~l~~--~~~~l~sgs~dg---------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 299 (474)
.++.+.+.++.--. ....++. .+.++++.+.+. .|.+.|...... +
T Consensus 182 ~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----------------~ 244 (595)
T 1fwx_A 182 ADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----------------A 244 (595)
T ss_dssp TTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH----------------H
T ss_pred CCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE----------------e
Confidence 99998888776211 2233334 467777777553 233333322110 1
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC--Ccc-eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------
Q 011971 300 SYDNRELASGGNDNRLFVWNQHS--TQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------- 369 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~--~~~-~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~------- 369 (474)
.++|+.+.. +.|.|.|.++ ++. +..+.. .....++.++|||+++++++. .+.+|.++|+.+.+
T Consensus 245 v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 245 IAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC
T ss_pred ccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEECccccccccccc
Confidence 234444333 5599999998 555 445533 335678999999999999876 68999999999653
Q ss_pred -----eeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceeEEEcCCCccE-----EEEEE
Q 011971 370 -----HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT----------MSKLATLTGHTFRV-----LYLAI 429 (474)
Q Consensus 370 -----~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~ 429 (474)
....+..+.....++|+++| .++++ ..-+++|.+||+.. .+.+..+..|-.+- ..+.+
T Consensus 318 ~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 318 DPRSAVVAEPELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp CGGGGEEECCBCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred CcccceEEEcCCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 45677788899999999999 66655 67899999999977 56777777665432 12245
Q ss_pred CCCCCEEEEEeC---CCcE----------EEEeCCCC
Q 011971 430 SPDGQTIVTGAG---DETL----------RFWNVFPS 453 (474)
Q Consensus 430 spdg~~l~t~s~---Dg~I----------~iW~l~~~ 453 (474)
+|||++|+++.. |..+ .++|+..+
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 799999998753 4432 77888443
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=5.3e-08 Score=91.00 Aligned_cols=195 Identities=9% Similarity=-0.001 Sum_probs=142.1
Q ss_pred cceeeeeCCC-CcEEEEEc---CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCCeE
Q 011971 168 FYLNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~---d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~~~ 242 (474)
.+...+.|++ +.++.++. ++.|.+.|..++++...+.++.......+++. ++.|++++ .++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3567889998 54444433 47999999999999998876543344456665 55565554 578999999999999
Q ss_pred EEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeec-C----cCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 243 VRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS-G----HKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~----h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
+.++......-..+++++..|+++..++.|.++|..+.+. +..+. + .-..+..+.|. ++..++....++.|.+
T Consensus 99 ~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 99 IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 9988632122345788887777777889999999988663 33332 1 11247788888 7766666666899999
Q ss_pred EECCCCcceEEEccC-------------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 318 WNQHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 318 wd~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
.|..+++.+..+... ......|+|+|+++.+++++. ....+...++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 999999988887532 135689999999999999986 6788888887553
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.02 E-value=1.8e-09 Score=104.04 Aligned_cols=251 Identities=14% Similarity=0.068 Sum_probs=166.4
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEE
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 257 (474)
+.+.+++.++.|+.|| .+++....... ....+.++...++|. |.+++.+ |..||. +++.+..+...........
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 4555555678899999 88887554432 233456777777665 5556555 888886 5544333332222222333
Q ss_pred ecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEE
Q 011971 258 WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVK 337 (474)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~ 337 (474)
.....+..++.++.|..+|.. +. .......+...+.++...+++. |..|+.++.|..+|.. ++....+......+.
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred EECCEEEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 347888899999999999988 44 3334444445566666766665 6667888999999998 877777766666777
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE
Q 011971 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT 416 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 416 (474)
++...+++. +++. . +.|..|| .+++.+...... ..+.++...+++...+ +..++.|..++ .+++.+..
T Consensus 181 ~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v---~t~~~gl~~~~-~~g~~~~~ 249 (330)
T 3hxj_A 181 AASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV---TSLDGHLYAIN-PDGTEKWR 249 (330)
T ss_dssp CCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE---EETTTEEEEEC-TTSCEEEE
T ss_pred eeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE---EcCCCeEEEEC-CCCCEeEE
Confidence 888877766 4442 2 7799999 777776665533 4577888888876554 44678888887 46666666
Q ss_pred EcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 417 LTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+......+..+.+.++| .|..++.+|.|..+|.
T Consensus 250 ~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred eeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 66554445556666566 5667788888888885
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=8.3e-08 Score=100.39 Aligned_cols=277 Identities=11% Similarity=0.007 Sum_probs=175.1
Q ss_pred CcEEEEEc-CCeEEEEeC-CCCCEEEEEecCCCCCE----------EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 178 HNVLAVGL-GNCVYLWNA-CSSKVTKLCDLGIDDSV----------CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 178 ~~~la~~~-d~~V~lwd~-~~~~~~~~~~~~~~~~V----------~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+.+++++. ++.|+-+|+ .+|+..-.........+ ..+.. .+..+++++.|+.|..+|..+++.+..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 44555555 688999999 89988766644321110 11222 356788899999999999999998877
Q ss_pred ecCCC--C--cEE-EEEecCCEEEEEeC------CCcEEEEECcCCcceEeeecCcCC----------------------
Q 011971 246 MEGHR--L--RVG-ALAWSSSLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKS---------------------- 292 (474)
Q Consensus 246 ~~~h~--~--~V~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~---------------------- 292 (474)
..... . .+. .....++.+++++. ++.|..+|..+++..-........
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 64221 0 111 11123566777665 789999999988743221111000
Q ss_pred ---------------CEEEEEEecCCCEEEEEeCC----------------CcEEEEECCCCcceEEEccC--C------
Q 011971 293 ---------------EVCGLKWSYDNRELASGGND----------------NRLFVWNQHSTQPVLKYCEH--T------ 333 (474)
Q Consensus 293 ---------------~V~~l~~spd~~~lasg~~D----------------g~v~iwd~~~~~~~~~~~~h--~------ 333 (474)
....+++.++...+..+..+ +.|..+|..+++.+..+... .
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~ 300 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccccc
Confidence 00235566766677666532 35999999999988877532 1
Q ss_pred --CcEEEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCCC--------------e---------------
Q 011971 334 --AAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--------------V--------------- 380 (474)
Q Consensus 334 --~~V~~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~--------------v--------------- 380 (474)
.++ -+....+|+ .+++.+. .+|.+.++|..+|+.+..+..... +
T Consensus 301 ~~~p~-l~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 301 VNQMV-LTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCE-EEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred CCCCE-EEecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 122 122223554 3555554 789999999999998876653321 1
Q ss_pred -----------EEEEEcCCCCeEEEEEe-----------------------------------cCCCeEEEEECCCCcee
Q 011971 381 -----------CNLVWSKNVNELVSTHG-----------------------------------YSQNQIIVWRYPTMSKL 414 (474)
Q Consensus 381 -----------~~l~~s~~~~~l~~~~g-----------------------------------~~dg~I~iwd~~~~~~~ 414 (474)
..++++|+...+++.+. ..++.|..||..+++.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 23577888777776431 13578999999999988
Q ss_pred EEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 415 ATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 415 ~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
-++.... .+....+...+..++.++.||.|+.||..+++......
T Consensus 458 W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 458 WTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 7765322 22222223346678889999999999999887655443
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=1.1e-07 Score=101.57 Aligned_cols=278 Identities=11% Similarity=0.056 Sum_probs=179.5
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC---------CE-EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---------SV-CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~---------~V-~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.+++++.++.|+-+|+.+|+..-..+..... .+ ..+.+ .+..+++++.||.|..+|..+++.+..+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 45666667889999999999987666442110 00 11222 35678889999999999999999887765
Q ss_pred CCC----CcEE-EEEecCCEEEEEeC------CCcEEEEECcCCcceEeeec-C-c------------------------
Q 011971 248 GHR----LRVG-ALAWSSSLLSSGSR------DKSILQRDIRAQEDFVSKLS-G-H------------------------ 290 (474)
Q Consensus 248 ~h~----~~V~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~-~-h------------------------ 290 (474)
... ..+. ......+.++++.. +|.|..+|..+++..-.... . .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 421 1111 11122456666643 58999999998874322211 0 0
Q ss_pred ----CCCEEEEEEecCCCEEEEEeCCC-------------------cEEEEECCCCcceEEEcc--CC-------CcEEE
Q 011971 291 ----KSEVCGLKWSYDNRELASGGNDN-------------------RLFVWNQHSTQPVLKYCE--HT-------AAVKA 338 (474)
Q Consensus 291 ----~~~V~~l~~spd~~~lasg~~Dg-------------------~v~iwd~~~~~~~~~~~~--h~-------~~V~~ 338 (474)
......++++++...++.+..++ .|..+|..+++.+..+.. |. .+...
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~ 304 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEE
Confidence 01112467888888888887766 399999999999888764 22 22222
Q ss_pred EEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC-------------Ce-----------------------
Q 011971 339 IAWSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-------------QV----------------------- 380 (474)
Q Consensus 339 l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-------------~v----------------------- 380 (474)
..+..+++ .+++.+. .+|.++++|..+|+.+..+.... .+
T Consensus 305 ~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 22223443 2455554 89999999999999874332111 00
Q ss_pred -EEEEEcCCCCeEEEEEe----------------------------------cCCCeEEEEECCCCceeEEEcCCCccEE
Q 011971 381 -CNLVWSKNVNELVSTHG----------------------------------YSQNQIIVWRYPTMSKLATLTGHTFRVL 425 (474)
Q Consensus 381 -~~l~~s~~~~~l~~~~g----------------------------------~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 425 (474)
..++++|+...+++... ..+|.|..||..+++.+-....+. .+.
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~ 461 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWN 461 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCC
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCc
Confidence 12567777666654211 123789999999999887765433 233
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 426 YLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 426 ~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
...+...|.+|+.++.||.|+.||..+++......
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 33344467789999999999999999887655443
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=5e-08 Score=95.27 Aligned_cols=223 Identities=10% Similarity=0.035 Sum_probs=142.4
Q ss_pred ceeeeeCCC-CcEEEEEc---CCeEEEEeCCCCCEEEEE-----ecCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEE
Q 011971 169 YLNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLC-----DLGIDDSVCSVGWANRNTHLAVGTS-----HGKVQI 234 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~---d~~V~lwd~~~~~~~~~~-----~~~~~~~V~~v~~sp~g~~la~gs~-----dg~I~i 234 (474)
....+++++ ++++++.. ++.+.||.+.++++...- ..++-..+.+|+++++|+++++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 467788886 56665542 342455554455433111 0123468999999999886665543 578999
Q ss_pred ecCCCCeEEEEecC------CCCcEEEEEecC--CEE-EEEe---CCCcEEEEECcCCcceEeeecCc------------
Q 011971 235 WDASRCKRVRTMEG------HRLRVGALAWSS--SLL-SSGS---RDKSILQRDIRAQEDFVSKLSGH------------ 290 (474)
Q Consensus 235 wd~~~~~~~~~~~~------h~~~V~~l~~~~--~~l-~sgs---~dg~I~iwd~~~~~~~~~~~~~h------------ 290 (474)
||+.+++.+..+.. +...+..+++++ ..+ ++.. .++.|.+||+.++. ....+.+|
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEE
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCcccccccceeE
Confidence 99999987776653 223567888873 444 4444 57899999997654 23333221
Q ss_pred -----------------CCCEEEEEEecCCCEEEEEeCCC-cEEEEECC---CCc-----ce--EEEccCCCcEEEEEEC
Q 011971 291 -----------------KSEVCGLKWSYDNRELASGGNDN-RLFVWNQH---STQ-----PV--LKYCEHTAAVKAIAWS 342 (474)
Q Consensus 291 -----------------~~~V~~l~~spd~~~lasg~~Dg-~v~iwd~~---~~~-----~~--~~~~~h~~~V~~l~~s 342 (474)
...+.+|+|+|+++.|+++..++ .|+.++.. .+. .. ....++......++++
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d 256 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID 256 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEEC
Confidence 12368999999999888887766 56555532 110 00 0111334456789999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--CCCeEEEEEcCCCCeEEEE
Q 011971 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 343 p~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~ 395 (474)
++|. ++++.. .++.|.+||..+++....... ...+..++|.+++..+++.
T Consensus 257 ~~G~-l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 257 KDHN-IYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTCC-EEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCC-EEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 9975 666654 578999999856654333322 3568899999998766663
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=5.5e-08 Score=103.75 Aligned_cols=274 Identities=13% Similarity=0.077 Sum_probs=173.9
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC--CCCEEEEEeC------CCcEEEecCCCCeEEEEecC
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~gs~------dg~I~iwd~~~~~~~~~~~~ 248 (474)
.+.+++.+.++.|+.+|+.+|+..-............+.-+| .+..++++.. +|.|..+|..+++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 355666667899999999999988776553211000010111 1345666654 58999999999999887752
Q ss_pred C---CC----------------------------cEEEEEec--CCEEEEEeCCCc-------------------EEEEE
Q 011971 249 H---RL----------------------------RVGALAWS--SSLLSSGSRDKS-------------------ILQRD 276 (474)
Q Consensus 249 h---~~----------------------------~V~~l~~~--~~~l~sgs~dg~-------------------I~iwd 276 (474)
. .. ....++++ .++++.++.++. |..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 00 00124554 368888877663 99999
Q ss_pred CcCCcceEeeec-CcC-------CCEEEEEEecCCC---EEEEEeCCCcEEEEECCCCcceEEEccCC------------
Q 011971 277 IRAQEDFVSKLS-GHK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT------------ 333 (474)
Q Consensus 277 ~~~~~~~~~~~~-~h~-------~~V~~l~~spd~~---~lasg~~Dg~v~iwd~~~~~~~~~~~~h~------------ 333 (474)
..+++..-..-. .|. .++....+..+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 998874332222 222 2333333334665 68899999999999999999875443211
Q ss_pred CcE------------------------EEEEECCCCCcEEEEe---------------------------------cCCC
Q 011971 334 AAV------------------------KAIAWSPHLHGLLASG---------------------------------GGTA 356 (474)
Q Consensus 334 ~~V------------------------~~l~~sp~~~~ll~sg---------------------------------~Gt~ 356 (474)
.++ ..++++|+...+++.. ....
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 000 1256777655444311 0013
Q ss_pred CCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccE-EEEEECCCCC-
Q 011971 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRV-LYLAISPDGQ- 434 (474)
Q Consensus 357 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~- 434 (474)
++.|..||+.+++.+..+..........+...+..+++ |..++.|++||..+++.+..+....... .-+.+..+|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 48899999999999888876665555555667778887 7899999999999999998887543211 1233344666
Q ss_pred EEEEEeC--------------------CCcEEEEeCCC
Q 011971 435 TIVTGAG--------------------DETLRFWNVFP 452 (474)
Q Consensus 435 ~l~t~s~--------------------Dg~I~iW~l~~ 452 (474)
+++.++. .+.|.++.+..
T Consensus 515 yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g 552 (668)
T 1kv9_A 515 YVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG 552 (668)
T ss_dssp EEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred EEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence 4555443 34788888765
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.96 E-value=1.8e-07 Score=98.01 Aligned_cols=280 Identities=10% Similarity=0.014 Sum_probs=174.1
Q ss_pred CcEEEEEc-CCeEEEEeC-CCCCEEEEEecCCCC----------CEEEEEEcCCCCE----EEEEeCCCcEEEecCCCCe
Q 011971 178 HNVLAVGL-GNCVYLWNA-CSSKVTKLCDLGIDD----------SVCSVGWANRNTH----LAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 178 ~~~la~~~-d~~V~lwd~-~~~~~~~~~~~~~~~----------~V~~v~~sp~g~~----la~gs~dg~I~iwd~~~~~ 241 (474)
+.+++++. ++.|+-+|+ .+|+..-..+..... ....++++|.+.. |++++.|+.|..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 44555555 688999999 899887666542211 0123455444444 8889999999999999999
Q ss_pred EEEEecCCCC----cEE-EEEecCCEEEEEe------CCCcEEEEECcCCcceEeeecCcCC------------------
Q 011971 242 RVRTMEGHRL----RVG-ALAWSSSLLSSGS------RDKSILQRDIRAQEDFVSKLSGHKS------------------ 292 (474)
Q Consensus 242 ~~~~~~~h~~----~V~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~------------------ 292 (474)
.+........ .+. ........+++++ .+|.|..+|..+++..-........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~ 222 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence 8877643210 111 1112245666665 3899999999988743222111100
Q ss_pred ------------------CE-EEEEEecCCCEEEEEeCC----------------CcEEEEECCCCcceEEEccCCC---
Q 011971 293 ------------------EV-CGLKWSYDNRELASGGND----------------NRLFVWNQHSTQPVLKYCEHTA--- 334 (474)
Q Consensus 293 ------------------~V-~~l~~spd~~~lasg~~D----------------g~v~iwd~~~~~~~~~~~~h~~--- 334 (474)
.+ ..+++.++...+..+..+ +.|..+|.++++.+..+.....
T Consensus 223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w 302 (599)
T 1w6s_A 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW 302 (599)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc
Confidence 00 134566777788777655 3899999999999887764221
Q ss_pred ------cEEEEEEC-CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC--------------Ce-----------
Q 011971 335 ------AVKAIAWS-PHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGS--------------QV----------- 380 (474)
Q Consensus 335 ------~V~~l~~s-p~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~--------------~v----------- 380 (474)
...-+... .+|+ .+++.+. .+|.+.++|..+|+.+....... .+
T Consensus 303 d~d~~~~p~l~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 380 (599)
T 1w6s_A 303 DYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH 380 (599)
T ss_dssp CCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred cccCCCccEEEeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence 11112222 4553 3555554 79999999999999887654221 01
Q ss_pred ---------------EEEEEcCCCCeEEEEEe-------------------------------c------CCCeEEEEEC
Q 011971 381 ---------------CNLVWSKNVNELVSTHG-------------------------------Y------SQNQIIVWRY 408 (474)
Q Consensus 381 ---------------~~l~~s~~~~~l~~~~g-------------------------------~------~dg~I~iwd~ 408 (474)
..++++|+...+++... . ..|.|..||+
T Consensus 381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~ 460 (599)
T 1w6s_A 381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA 460 (599)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence 13566776665554210 1 3478999999
Q ss_pred CCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
.+++.+-+.... .++..-.+...+.+|+.++.||.|+.||..+++...+..
T Consensus 461 ~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 461 ITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 999887766421 112111122256688889999999999999988665443
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.96 E-value=3.4e-07 Score=83.94 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=139.0
Q ss_pred CCCcccccCCCCCCCcceeeeeCCCCcEEEEEcC---CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eC
Q 011971 153 RSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLG---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TS 228 (474)
Q Consensus 153 ~~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d---~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~ 228 (474)
...++++..--+....+...+.|+.+.++.+... +.|+.+|+.++++.....++..----.+++. ++.|... ..
T Consensus 6 ~~~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 6 TQGYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp BCCEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred ccceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence 3455666654344556788889988665555443 4899999999999998876433222334443 4555544 45
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC--cC---CCEEEEEEecCC
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HK---SEVCGLKWSYDN 303 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~V~~l~~spd~ 303 (474)
++.+.+||..+.+.+.++.... .-..+++.+..|+.+..++.|.++|..+.+. +..+.- +. ..++.+.|. +|
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT
T ss_pred CCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CC
Confidence 8899999999999999987433 3367778887777777899999999988763 333322 11 346677776 67
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEccC-------------CCcEEEEEECCCCCcEEEEe
Q 011971 304 RELASGGNDNRLFVWNQHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 304 ~~lasg~~Dg~v~iwd~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~ll~sg 352 (474)
+.++....++.|.+.|..+++.+..+... ....+.|||+|+++.|+++|
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 66666667889999999999988877521 13568999999999999987
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.96 E-value=5e-07 Score=87.10 Aligned_cols=240 Identities=9% Similarity=-0.034 Sum_probs=153.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-C------------------CCCcEEEEEecC--CEEEEEe
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-G------------------HRLRVGALAWSS--SLLSSGS 267 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-~------------------h~~~V~~l~~~~--~~l~sgs 267 (474)
....+++|.++|++++++..++.|..||..+++...... . ....+..+++.+ ..|+.+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678899999888889889999999987654332111 0 013578888873 6777776
Q ss_pred CCCcEEEEECcCCcc-eEe-eecC-cCCCEEEEEEec-CCCEEEEEeC-----------------CCcEEEEECCCCcce
Q 011971 268 RDKSILQRDIRAQED-FVS-KLSG-HKSEVCGLKWSY-DNRELASGGN-----------------DNRLFVWNQHSTQPV 326 (474)
Q Consensus 268 ~dg~I~iwd~~~~~~-~~~-~~~~-h~~~V~~l~~sp-d~~~lasg~~-----------------Dg~v~iwd~~~~~~~ 326 (474)
..+.|..+|..++.. .+. ...+ .......+++.+ +|+.+++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 666688888765431 111 1111 123578899999 8987766432 367999998766543
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeee-cCCCCeEEEEEcCCCCeEEEEEe------
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCM-DTGSQVCNLVWSKNVNELVSTHG------ 397 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~-~~~~~v~~l~~s~~~~~l~~~~g------ 397 (474)
... ........++|+|++..++++.. ..+.|..|++.... ....+ .... ...+++.++|+..++..+
T Consensus 179 ~~~-~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 179 LLL-KELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEE-EEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred Eec-cCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 222 22234567999999987777754 46889999987521 11111 1223 788999999986666432
Q ss_pred --cCCCeEEEEECCCCceeEEEcCCC----ccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 398 --YSQNQIIVWRYPTMSKLATLTGHT----FRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 398 --~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
...+.|..+|. .++.+..+.... ..+..+++ .++++.++....+.|..+++....
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 11466888875 577777665432 34666766 366666666677889999886443
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=2.7e-06 Score=79.50 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=143.1
Q ss_pred CEEEEEeCCCcEEEecCCCCeE-----EEEecCCCCcEEEEEecC--CE-EEEEeCCCcEEEEECcCCcceEeeecCcCC
Q 011971 221 THLAVGTSHGKVQIWDASRCKR-----VRTMEGHRLRVGALAWSS--SL-LSSGSRDKSILQRDIRAQEDFVSKLSGHKS 292 (474)
Q Consensus 221 ~~la~gs~dg~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~~~--~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 292 (474)
.+|+.+.. +.|+.+++..... ...+......+..++|++ +. +++-..++.|..+++.... ..........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence 45555553 4788888765432 111222234577888873 44 4455567899999987654 2222222335
Q ss_pred CEEEEEEecCCCEEE-EEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011971 293 EVCGLKWSYDNRELA-SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (474)
Q Consensus 293 ~V~~l~~spd~~~la-sg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~ 371 (474)
...++++++++..|. +-...+.|.++++..................++++|++..++++..+...+.|..+++.... .
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~ 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence 689999999765554 44557799999987543322232223567899999987778777642124688888876433 2
Q ss_pred eee--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEEEE
Q 011971 372 SCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLRFW 448 (474)
Q Consensus 372 ~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~iW 448 (474)
..+ ........+++++++..|+++ ....+.|.++++........+.+ ......++.. +..|+.+. ..+.|..+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 222 223468899999998888775 45678999999875443333332 2234566664 44555544 56889999
Q ss_pred eCCCCCCC
Q 011971 449 NVFPSPKS 456 (474)
Q Consensus 449 ~l~~~~~~ 456 (474)
+..++...
T Consensus 235 d~~~g~~~ 242 (267)
T 1npe_A 235 DLAISKEM 242 (267)
T ss_dssp ETTTTEEE
T ss_pred eCCCCCce
Confidence 98766543
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=1.4e-05 Score=86.92 Aligned_cols=268 Identities=11% Similarity=0.070 Sum_probs=181.2
Q ss_pred cceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecC------CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG------IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~------~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
..+.++...+ +++.++.. +.|.+|+..+++........ ....|.++...++|. |.+|+.++-|..|+..+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 3577777776 55555554 48999999888765543211 235799999999887 667888777999987655
Q ss_pred eEEEEec------CCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeec---------CcCCCEEEEEEecCCC
Q 011971 241 KRVRTME------GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLS---------GHKSEVCGLKWSYDNR 304 (474)
Q Consensus 241 ~~~~~~~------~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~spd~~ 304 (474)
....... -....|.++..+. ..|..|+.++-|..||..+.. ...+. .....|.++...++++
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 418 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKKS 418 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTTT
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCCC
Confidence 4322211 1245689998874 578889998889999987654 22221 1235799999888887
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEc-----cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---- 375 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---- 375 (474)
.|..|+.++-|.+||..+++.. .+. .....|.++...+++. |++.. . +-|..||..+++......
T Consensus 419 ~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 419 LVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGN-LWLGT---L-SALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp EEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSC-EEEEE---S-SCEEEEETTTTEEEECCBCTTC
T ss_pred EEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCC-EEEEe---c-CceeEEeCCCCeEEEccccccc
Confidence 6777888778999998877543 332 1345799999998876 44432 3 458899988765443221
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-------CCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 376 ---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-------GHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 376 ---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
....|.++...++++..+.+ . +-|..|+..+.+. .+. .....|.++...++|.+.++. .. -|
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl 564 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GF 564 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CE
T ss_pred cccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-Cc
Confidence 13568899999988877652 3 5688888776654 332 134578999999999866544 33 57
Q ss_pred EEEeCCCC
Q 011971 446 RFWNVFPS 453 (474)
Q Consensus 446 ~iW~l~~~ 453 (474)
..|+....
T Consensus 565 ~~~d~~~~ 572 (795)
T 4a2l_A 565 YCFNEKDK 572 (795)
T ss_dssp EEEETTTT
T ss_pred eeECCCCC
Confidence 77876543
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.88 E-value=5.3e-07 Score=94.44 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=172.5
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCE--------EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV--------CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V--------~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
+.+++++..+.|+-+|+.+|+..-.......... ..+.. .+..+++++.++.|..+|..+++.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4455555545699999999998766654321110 11222 3567888999999999999999988776532
Q ss_pred CC----cEE-EEEecCC------EEEEEe------CCCcEEEEECcCCcceEeeecCcCCC-------------------
Q 011971 250 RL----RVG-ALAWSSS------LLSSGS------RDKSILQRDIRAQEDFVSKLSGHKSE------------------- 293 (474)
Q Consensus 250 ~~----~V~-~l~~~~~------~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~~------------------- 293 (474)
.. .+. ....... .+++++ .++.|..+|..+++..-. .......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-RPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-EESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-cCCCccccccccCccccccccccccc
Confidence 21 111 1111123 666665 378999999988774322 1110000
Q ss_pred ----------------------EEEEEEecCCCEEEEEeC--------------------C----CcEEEEECCCCcceE
Q 011971 294 ----------------------VCGLKWSYDNRELASGGN--------------------D----NRLFVWNQHSTQPVL 327 (474)
Q Consensus 294 ----------------------V~~l~~spd~~~lasg~~--------------------D----g~v~iwd~~~~~~~~ 327 (474)
-..++++++...++.+.. | +.|..+|..+++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 013456677777776663 2 589999999999988
Q ss_pred EEcc--CC--------CcEEEEEEC-CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCCCe--------------
Q 011971 328 KYCE--HT--------AAVKAIAWS-PHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV-------------- 380 (474)
Q Consensus 328 ~~~~--h~--------~~V~~l~~s-p~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v-------------- 380 (474)
.+.. |. .++ -+... .+|+ .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 8753 31 122 12221 4554 3555554 8999999999999988765533210
Q ss_pred --------------------------------EEEEEcCCCCeEEEEEe-------------------------------
Q 011971 381 --------------------------------CNLVWSKNVNELVSTHG------------------------------- 397 (474)
Q Consensus 381 --------------------------------~~l~~s~~~~~l~~~~g------------------------------- 397 (474)
..++++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 12456666555555321
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCCCc
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEI 463 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~~~ 463 (474)
...|.|..||+.+++.+-+...+. .+..-.+...+.+++.|+.||.|+.||..+++...+.....
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 135789999999999887765332 22211122246688889999999999999988765544333
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=1.1e-05 Score=87.75 Aligned_cols=270 Identities=9% Similarity=0.012 Sum_probs=177.2
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
+.++...+ +.+.++..++.|+.|+..+++............|.++...++|. |.+|+.++-|.+||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecC
Confidence 55555554 56666555568999999888776543223356799998888776 55566554589999887765443322
Q ss_pred -------CCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeec--------CcCCCEEEEEEecCCCEEEEEeCC
Q 011971 249 -------HRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLS--------GHKSEVCGLKWSYDNRELASGGND 312 (474)
Q Consensus 249 -------h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~spd~~~lasg~~D 312 (474)
....|.++... ...|..|+.+ -|.+||..+.. ...+. -....|.++...++|. |..|+.+
T Consensus 254 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp TTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 24579999887 4667777766 58889877654 22221 1235799999988876 5667777
Q ss_pred CcEEEEECCCCcceEEEcc-------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---------C
Q 011971 313 NRLFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---------T 376 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---------~ 376 (474)
+-|.+|+..+.... .+.. ....|.++...+++. |.+. +.++-|..||..++....... .
T Consensus 330 ~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiG---t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 330 GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIG---TNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEE---ESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEE---ECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 77999987654322 2211 245699999998876 4442 256679999988776543221 1
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc----CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT----GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
...|.++...++++.|.+ |..++-|.+||..+++...-.. .+...|.++...++|.+.+.. . +-|.+|+...
T Consensus 405 ~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~ 480 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQ 480 (795)
T ss_dssp CSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTT
T ss_pred CccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCC
Confidence 356889998888884555 5566779999987765433221 234579999998888766544 4 4578888765
Q ss_pred C
Q 011971 453 S 453 (474)
Q Consensus 453 ~ 453 (474)
+
T Consensus 481 ~ 481 (795)
T 4a2l_A 481 R 481 (795)
T ss_dssp T
T ss_pred C
Confidence 4
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.88 E-value=2.6e-07 Score=91.88 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=144.1
Q ss_pred cEEEEEc-CCeEEEEeCCCC----CEEEEEe---c--C-CCCCEEEEEEcCCCCEEEEEeCC------CcEEEecCCCCe
Q 011971 179 NVLAVGL-GNCVYLWNACSS----KVTKLCD---L--G-IDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCK 241 (474)
Q Consensus 179 ~~la~~~-d~~V~lwd~~~~----~~~~~~~---~--~-~~~~V~~v~~sp~g~~la~gs~d------g~I~iwd~~~~~ 241 (474)
.+++.+. ++.|+++|..+. ++.+.++ + . ....-..+..+|+| +++++..+ |.|.++|.++.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 3444443 679999999766 5666652 1 0 11245567888999 66665554 789999999999
Q ss_pred EEEEecCC--C-CcEEEEEecC--CEEEEEe-------------------CCCcEEEEECcCCcceEeeecCc--CCCEE
Q 011971 242 RVRTMEGH--R-LRVGALAWSS--SLLSSGS-------------------RDKSILQRDIRAQEDFVSKLSGH--KSEVC 295 (474)
Q Consensus 242 ~~~~~~~h--~-~~V~~l~~~~--~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~h--~~~V~ 295 (474)
.+.++... . .--..+.|++ +.+++.. .+..|.+||+.+.+ .+.++... .....
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMAL 254 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEE
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCccc
Confidence 99998632 1 1233466663 6677664 37899999998764 45444432 23345
Q ss_pred EEEE--ecCCCEEEEEe------CCCcEEEEECCCCcc--eEEE--ccC----------------CCcEEEEEECCCCCc
Q 011971 296 GLKW--SYDNRELASGG------NDNRLFVWNQHSTQP--VLKY--CEH----------------TAAVKAIAWSPHLHG 347 (474)
Q Consensus 296 ~l~~--spd~~~lasg~------~Dg~v~iwd~~~~~~--~~~~--~~h----------------~~~V~~l~~sp~~~~ 347 (474)
.+.| +|+++++.+++ .+++|.+|....++. ...+ ... ......|.+++|++.
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf 334 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF 334 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence 6656 99999888777 466888776654421 1111 110 234688999999999
Q ss_pred EEEEecCCCCCeEEEEECCC---CceeeeecCCC---------------CeEEEEEcCCCCeEEEEE
Q 011971 348 LLASGGGTADRCIRFWNTTT---NTHLSCMDTGS---------------QVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~---~~~~~~~~~~~---------------~v~~l~~s~~~~~l~~~~ 396 (474)
|+++.- ..+.|.+||+.. .+.+..+..++ ....+.++++|++|+++.
T Consensus 335 LYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 335 LYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999876 468999999863 35566665542 358899999999999964
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=3.5e-07 Score=84.60 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=136.4
Q ss_pred CCcccccCCCCCCCcceeeeeCCCCcEEEEE-cCC--eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC
Q 011971 154 SPYKILDAPALQDDFYLNLVDWSSHNVLAVG-LGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SH 229 (474)
Q Consensus 154 ~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~-~d~--~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~d 229 (474)
..++++..-......+...+.|+.+.++.+. .++ .|+++|+.++++.....++. ........++++.|...+ .+
T Consensus 29 ~~~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 29 YDYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSS
T ss_pred cceEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeC
Confidence 3455655433344456788888865444433 444 89999999999999887643 333333333455666555 47
Q ss_pred CcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC----cC-CCEEEEEEecCCC
Q 011971 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG----HK-SEVCGLKWSYDNR 304 (474)
Q Consensus 230 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----h~-~~V~~l~~spd~~ 304 (474)
+.+.+||..+.+.+.++.-.. .-..+++.+..|+....++.|.++|..+.+. +..+.- .. ..++.+.|. +|.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCE
Confidence 899999999999999987433 2356777787777777788899999988763 333222 11 345668886 776
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEccC------------CCcEEEEEECCCCCcEEEEe
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVLKYCEH------------TAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~ll~sg 352 (474)
.++..-.++.|.+.|..+++.+..+... ....+.|||+|+++.|+++|
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6666667889999999999988877532 13568999999999999987
No 252
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.85 E-value=1.9e-05 Score=75.93 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=148.3
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCC----CeEEEEecCCCCcEE
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASR----CKRVRTMEGHRLRVG 254 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~----~~~~~~~~~h~~~V~ 254 (474)
+|..+..+.|+..++.+.+...++ .....+.+++|.+.+..|+.. ...+.|..+++.. ......+...-....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 466677788999999988877665 345678999999876655555 4568899999875 222223332223345
Q ss_pred EEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC--CcEEEEECCCCcceEEE
Q 011971 255 ALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--NRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 255 ~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D--g~v~iwd~~~~~~~~~~ 329 (474)
.++++ + +++++-...+.|.+.|+.... ....+........+++++|.+..|...... +.|..+++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE
Confidence 56654 4 455555678899999987543 222222234568999999966665555443 68998888643 33333
Q ss_pred -ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 330 -CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 330 -~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
...-.....|++++++..|+.+-. ..+.|..+|+........... ......+++. +..++.+ ....+.|..
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d~~~~~V~~ 233 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAIFS 233 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEEEE
T ss_pred EECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-ECCCCeEEE
Confidence 233456789999998888888865 578999999875332222221 2346778774 3455554 457789999
Q ss_pred EECCCCceeEEEc
Q 011971 406 WRYPTMSKLATLT 418 (474)
Q Consensus 406 wd~~~~~~~~~l~ 418 (474)
++..+++.+..+.
T Consensus 234 ~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 234 ANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTCCCCEEEE
T ss_pred EeCCCCcceEEEe
Confidence 9987776665554
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=3.6e-07 Score=84.50 Aligned_cols=190 Identities=10% Similarity=0.007 Sum_probs=134.7
Q ss_pred ccccCCCCCCCcceeeeeCCCCcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEE
Q 011971 157 KILDAPALQDDFYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQI 234 (474)
Q Consensus 157 ~~l~ap~~~~d~~v~~l~~s~~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-gs~dg~I~i 234 (474)
+++..-......+...+.|+.+.++.+. .++.|+++|+.++++.... ++..----.+++. ++.|.. ...++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEE
Confidence 4444322333455678888876555544 4678999999999998887 6432222335554 444444 445889999
Q ss_pred ecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC--cC---CCEEEEEEecCCCEEEEE
Q 011971 235 WDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HK---SEVCGLKWSYDNRELASG 309 (474)
Q Consensus 235 wd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~V~~l~~spd~~~lasg 309 (474)
||.++.+.+.++.... .-..+++.+..|+.+..++.|.++|..+.+. +..+.- +. ..++.+.|. +|..++..
T Consensus 121 ~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 121 WSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EETTTTEEEEEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EECCcCcEEEEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 9999999999987532 3367778888888888899999999988763 333322 11 245778887 77666666
Q ss_pred eCCCcEEEEECCCCcceEEEccC-------------CCcEEEEEECCCCCcEEEEe
Q 011971 310 GNDNRLFVWNQHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~ll~sg 352 (474)
..++.|.+.|..+++.+..+... ....+.|||+|+++.|+++|
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 57889999999999988777531 13578999999999999997
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=5.3e-06 Score=79.33 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=140.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC-C-cEEEEECcCCcce
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD-K-SILQRDIRAQEDF 283 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d-g-~I~iwd~~~~~~~ 283 (474)
......++|+++|+++++-..++.|..||.... ....+. ....+..+++.+ +++++.... + .|..+|..++..
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 356789999999987666667899999998754 333332 235688899873 554444332 2 476777665542
Q ss_pred Eeee-cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc-eEEEc---------cCCCcEEEEEECCCCCcEEEEe
Q 011971 284 VSKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYC---------EHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 284 ~~~~-~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~-~~~~~---------~h~~~V~~l~~sp~~~~ll~sg 352 (474)
.... ........+++..+++..+++-..++.|+++|...++. +.... ..-.....+ ++++..++++.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 1111 11223345666555555555555688999999876431 21110 111234555 78888888876
Q ss_pred cCCCCCeEEEEECCC-Cce--eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE--EEcCCCccEEEE
Q 011971 353 GGTADRCIRFWNTTT-NTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA--TLTGHTFRVLYL 427 (474)
Q Consensus 353 ~Gt~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l 427 (474)
. ..+.|..|++.. +.. ...+........++++++|+.+++ ....+.|.+++.. ++... .+........++
T Consensus 186 ~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 T--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp T--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred C--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 5 678999999874 332 112222245677899999986665 5567899999964 55422 333333568999
Q ss_pred EEC---CCCCEEEEEeCCC
Q 011971 428 AIS---PDGQTIVTGAGDE 443 (474)
Q Consensus 428 ~~s---pdg~~l~t~s~Dg 443 (474)
+|. ||+..|+.++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8988777666543
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.85 E-value=7.7e-07 Score=93.03 Aligned_cols=256 Identities=13% Similarity=0.045 Sum_probs=160.4
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCC---CCEEE-EEEcCCCCEEEEEeC------CCcEEEecCCCCeEEEEe
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGID---DSVCS-VGWANRNTHLAVGTS------HGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~---~~V~~-v~~sp~g~~la~gs~------dg~I~iwd~~~~~~~~~~ 246 (474)
.+.+++.+.++.|+.+|+.+|+..-...+... ..+.+ ... .+..+++++. +|.|..+|..+++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 35566666789999999999998776654320 01211 111 1346666665 789999999999988776
Q ss_pred cCCCCc-------------------------------------E-EEEEec--CCEEEEEeCC----------------C
Q 011971 247 EGHRLR-------------------------------------V-GALAWS--SSLLSSGSRD----------------K 270 (474)
Q Consensus 247 ~~h~~~-------------------------------------V-~~l~~~--~~~l~sgs~d----------------g 270 (474)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532111 0 123343 2566666532 3
Q ss_pred cEEEEECcCCcceEee-ecCc--------CCCEEEEEEecCCC---EEEEEeCCCcEEEEECCCCcceEEEccCC-----
Q 011971 271 SILQRDIRAQEDFVSK-LSGH--------KSEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT----- 333 (474)
Q Consensus 271 ~I~iwd~~~~~~~~~~-~~~h--------~~~V~~l~~spd~~---~lasg~~Dg~v~iwd~~~~~~~~~~~~h~----- 333 (474)
.|..+|.++++..-.. ...| ..++. +....+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5899999987743222 1222 12222 22234674 57788999999999999999887664321
Q ss_pred --------CcE--------------------------EEEEECCCCCcEEEEec---------------C----------
Q 011971 334 --------AAV--------------------------KAIAWSPHLHGLLASGG---------------G---------- 354 (474)
Q Consensus 334 --------~~V--------------------------~~l~~sp~~~~ll~sg~---------------G---------- 354 (474)
.++ ..++++|+...+++... |
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 23567777665554321 0
Q ss_pred ---------CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc-E
Q 011971 355 ---------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR-V 424 (474)
Q Consensus 355 ---------t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~-V 424 (474)
..++.|..||+.+++.+..+.....+....+...+..+++ +..++.|+.||..+++.+.++...... -
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 1358899999999999888876655444334445666776 778999999999999999888743221 1
Q ss_pred EEEEECCCCCEEE
Q 011971 425 LYLAISPDGQTIV 437 (474)
Q Consensus 425 ~~l~~spdg~~l~ 437 (474)
.-+.+..+|+.++
T Consensus 510 ~p~~~~~~G~~yv 522 (571)
T 2ad6_A 510 SPMTYSFKGKQYI 522 (571)
T ss_dssp CCEEEEETTEEEE
T ss_pred eeEEEEECCEEEE
Confidence 1233556776444
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=1.4e-06 Score=80.53 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=130.5
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEecCCCCeEEEEecCCCCc-EEEEEecCCEEEE-EeCCCcEEE
Q 011971 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTMEGHRLR-VGALAWSSSLLSS-GSRDKSILQ 274 (474)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg--~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~~~l~s-gs~dg~I~i 274 (474)
+++.+..+...-...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.... -..++..++.|.. .-.++.+.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 3444433334456889998 665555555555 8999999999999888643332 2335666655544 456889999
Q ss_pred EECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC--C---CcEEEEEECCCCCcEE
Q 011971 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH--T---AAVKAIAWSPHLHGLL 349 (474)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h--~---~~V~~l~~sp~~~~ll 349 (474)
+|..+.+ .+.++.... .+..+++|++.|+....++.|.++|..+.+.+..+.-. . ..++.+.|. +| .++
T Consensus 112 ~D~~t~~-~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~ly 185 (262)
T 3nol_A 112 WNIRNLR-QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIF 185 (262)
T ss_dssp EETTTCC-EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred EECccCc-EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEE
Confidence 9998877 455544322 22233357777777766889999999999888776532 2 334567776 55 477
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecCC-------------CCeEEEEEcCCCCeEEEE
Q 011971 350 ASGGGTADRCIRFWNTTTNTHLSCMDTG-------------SQVCNLVWSKNVNELVST 395 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l~~~ 395 (474)
+..- .+..|.+.|..+++.+..++.. .-...|+|+|+++.|+++
T Consensus 186 an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 186 ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 6654 6789999999999998887642 246889999999988886
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.83 E-value=5.3e-07 Score=92.74 Aligned_cols=189 Identities=8% Similarity=0.026 Sum_probs=139.2
Q ss_pred CCEEEEE-eCCCcEEEEECcCCcceEeeec-CcCCCEEEEEE-e-cCCCEEEEEe------------------CCCcEEE
Q 011971 260 SSLLSSG-SRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKW-S-YDNRELASGG------------------NDNRLFV 317 (474)
Q Consensus 260 ~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~-s-pd~~~lasg~------------------~Dg~v~i 317 (474)
+.+++.. ..+..|.+.|+.+.+ +...+. .....+.++++ + |+++++++++ .++.+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~-~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCce-EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 3444444 445679999999876 333222 22356889998 5 8999998885 2457999
Q ss_pred EECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCC-----------------------------------CeEEE
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-----------------------------------RCIRF 362 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d-----------------------------------~~I~i 362 (474)
+|..+.+.+.++.-.. ....++++|+|++++++...++. +.|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998888875433 45778899999988888742211 24788
Q ss_pred EECCC--Cce-eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------eeEEEcCCCccEEEE
Q 011971 363 WNTTT--NTH-LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS------------KLATLTGHTFRVLYL 427 (474)
Q Consensus 363 wd~~~--~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------~~~~l~~h~~~V~~l 427 (474)
.|..+ ++. +..+..+....++.++|||++++++ +..++.|.++|+.+.+ .+.++.. ......+
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEE
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-CCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceE
Confidence 88887 555 6677777788899999999999987 6788999999998653 3344432 3457899
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 428 AISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+|+|||...++.-.|++|.+||+..
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EECCCCeEEEEEecCCcEEEEEhhH
Confidence 9999994445666799999999976
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.82 E-value=1.2e-05 Score=78.48 Aligned_cols=240 Identities=9% Similarity=-0.046 Sum_probs=155.3
Q ss_pred eeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCCCeEEEEecCC
Q 011971 171 NLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 171 ~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~~~~~~~~~~h 249 (474)
.|.+..+..+|..+..+.|+..++.......+.. ....+..++|.+.+..|+.. ...+.|..+++........+...
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 4555555666777777889999998777665553 34568999999866655555 45788999998766544444332
Q ss_pred CCcEEEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe-CC-CcEEEEECCCCc
Q 011971 250 RLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-ND-NRLFVWNQHSTQ 324 (474)
Q Consensus 250 ~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~-~D-g~v~iwd~~~~~ 324 (474)
......++++ . .++++-...+.|.+.++..... ...+...-....+|+++|.+..|.... .. +.|..+++....
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 2333445554 3 4556666678899999876542 222333445689999999665555444 44 789999886543
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
....+...-.....|+++|++..|+.+-. ..+.|..+|+........+. .......+++. +..++.+ ....+.|
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~t-d~~~~~V 268 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWT-DWHTKSI 268 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEE-ETTTTEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEe-cCCCCeE
Confidence 32222233456789999998888888865 57889999987543333232 23456777773 3455544 5567888
Q ss_pred EEEECCCCceeEEEc
Q 011971 404 IVWRYPTMSKLATLT 418 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~ 418 (474)
..++..+++.+..+.
T Consensus 269 ~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 269 NSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEEccCCCccEEec
Confidence 888866666655554
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.82 E-value=9e-06 Score=80.62 Aligned_cols=250 Identities=8% Similarity=-0.051 Sum_probs=161.1
Q ss_pred eeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCCCeEEEEecCCC
Q 011971 172 LVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHR 250 (474)
Q Consensus 172 ~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~~~~~~~~~~h~ 250 (474)
|.+..+..+|..+..+.|+..++.+.....+.. ....+..++|.+.+..|+.. ...+.|..+++........+....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 444455566777777889999998877766653 34568999999866555544 457789999988665444443322
Q ss_pred CcEEEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe-CC-CcEEEEECCCCcc
Q 011971 251 LRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-ND-NRLFVWNQHSTQP 325 (474)
Q Consensus 251 ~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~-~D-g~v~iwd~~~~~~ 325 (474)
.....++++ . .++++-...+.|.+.++..... ...+...-....+|+++|.+..|.... .. +.|..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 233444444 3 4555666677888888865442 222333446689999998766655554 34 6899999875443
Q ss_pred eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q 011971 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (474)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 404 (474)
.......-.....|+|+|++..|+++-. ..+.|..+|+........+. .......+++. +..|+.+ ....+.|.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~t-d~~~~~V~ 312 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWT-DWHTKSIN 312 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEE-ETTTTEEE
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEe-eCCCCeEE
Confidence 3333334456789999998888888865 57889999987543333332 23456778873 3345544 55778899
Q ss_pred EEECCCCceeEEEcCCCccEEEEEE
Q 011971 405 VWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 405 iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
.++..+++.+..+.........|++
T Consensus 313 ~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 313 SANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEECCCCcceEEEccCCCCCceEEE
Confidence 9987777766666543333344443
No 260
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.81 E-value=3.8e-05 Score=76.49 Aligned_cols=246 Identities=10% Similarity=-0.059 Sum_probs=161.0
Q ss_pred CCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCC----eEEEEecCCC
Q 011971 176 SSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRC----KRVRTMEGHR 250 (474)
Q Consensus 176 s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~----~~~~~~~~h~ 250 (474)
.+..+|..+....|+..++.......+. .....+..|+|++.+..|+... ..+.|+.+++... .....+....
T Consensus 81 ~~~~~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 81 GSIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp TTSCEEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred cccceeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 3455677777889999999988776665 3456889999998766665554 5678988988652 2333333334
Q ss_pred CcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCcc
Q 011971 251 LRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQP 325 (474)
Q Consensus 251 ~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~~~~~ 325 (474)
.....|+++ ++++++-...+.|.+.++.... ....+...-....+|+++|.+..|..... .+.|...++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 455566654 3555666677889999987654 22233334456899999997666655543 37899999875544
Q ss_pred eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
...+...-.....|++++++..|+.+-. ..+.|..+|+........+.. -.....+++ ++..|+.+ ....+.
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~~~~ 312 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DIINEA 312 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESSSCS
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCCCCe
Confidence 3333344467899999998888888765 578899999875443333322 234556666 34455554 456788
Q ss_pred EEEEECCCCceeEEEcCCCccEEEEEE
Q 011971 403 IIVWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
|..++..+++.+..+.........+++
T Consensus 313 V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEEcCCCCceEEEecCCCCCceEEE
Confidence 999998788777766544444455543
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=2.2e-06 Score=79.31 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=131.8
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCC-cEEEEEecC-CEEEEEeCCCcEEEE
Q 011971 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL-RVGALAWSS-SLLSSGSRDKSILQR 275 (474)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~~~-~~l~sgs~dg~I~iw 275 (474)
++++.+..+.......+.|+. +.++.+.+.+|.|+++|+++++.+..+ -... -...++..+ .+.+....++.+.+|
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 344455434445568899873 556666667889999999999988776 2222 123366665 555556678999999
Q ss_pred ECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc--CC---CcEEEEEECCCCCcEEE
Q 011971 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE--HT---AAVKAIAWSPHLHGLLA 350 (474)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~--h~---~~V~~l~~sp~~~~ll~ 350 (474)
|..+.+ .+.++... .+-.+++ +|++.|+.+..++.|.++|..+.+.+.++.- +. ..++.+.|. +| .+++
T Consensus 122 D~~Tl~-~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lya 195 (268)
T 3nok_A 122 SGMPPQ-RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYA 195 (268)
T ss_dssp ETTTTE-EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred ECCcCc-EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEE
Confidence 998877 45554432 2223444 5678888877799999999999988877653 22 245667777 55 4776
Q ss_pred EecCCCCCeEEEEECCCCceeeeecCC--------------CCeEEEEEcCCCCeEEEE
Q 011971 351 SGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVST 395 (474)
Q Consensus 351 sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 395 (474)
..- .+..|.+.|..+++.+..++.. .-.+.|+|+|+++.|+++
T Consensus 196 nvw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 196 NIW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp EET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred EEC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 653 5789999999999998877632 346889999998888875
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=6.1e-06 Score=86.44 Aligned_cols=256 Identities=12% Similarity=0.041 Sum_probs=157.0
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEEecCCC---CCEEE-EEEcCCCCEEEEEeC------CCcEEEecCCCCeEEEEecCC
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLCDLGID---DSVCS-VGWANRNTHLAVGTS------HGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~~~~~~---~~V~~-v~~sp~g~~la~gs~------dg~I~iwd~~~~~~~~~~~~h 249 (474)
+++.+.++.|+-+|+.+|+..-....... ..+++ .... + ..+++++. +|.|..+|..+++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 66666789999999999998766554320 01211 1111 3 45666653 799999999999988776532
Q ss_pred CCc-------------------------------------EE-EEEe--cCCEEEEEeCC----------------CcEE
Q 011971 250 RLR-------------------------------------VG-ALAW--SSSLLSSGSRD----------------KSIL 273 (474)
Q Consensus 250 ~~~-------------------------------------V~-~l~~--~~~~l~sgs~d----------------g~I~ 273 (474)
... +. .+++ ..++++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 00 1223 24677777665 3799
Q ss_pred EEECcCCcceEee-ecCcC--------CCEEEEEEe-cCC---CEEEEEeCCCcEEEEECCCCcceEEEccCC-------
Q 011971 274 QRDIRAQEDFVSK-LSGHK--------SEVCGLKWS-YDN---RELASGGNDNRLFVWNQHSTQPVLKYCEHT------- 333 (474)
Q Consensus 274 iwd~~~~~~~~~~-~~~h~--------~~V~~l~~s-pd~---~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~------- 333 (474)
.+|.++++..-.. ...|. ..+. +... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999988743222 22221 1222 2222 467 467778999999999999999887654211
Q ss_pred ------CcE--------------------------EEEEECCCCCcEEEEec----------------------------
Q 011971 334 ------AAV--------------------------KAIAWSPHLHGLLASGG---------------------------- 353 (474)
Q Consensus 334 ------~~V--------------------------~~l~~sp~~~~ll~sg~---------------------------- 353 (474)
.++ ..++++|+...+++...
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 13556666543333210
Q ss_pred --CC------CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccE-
Q 011971 354 --GT------ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRV- 424 (474)
Q Consensus 354 --Gt------~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V- 424 (474)
.. .++.|..||+.+++.+...........-.....+..+++ +..|+.|+.||..+++.+-+++.....+
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 01 347899999999999888765443322222335666666 7789999999999999998886433211
Q ss_pred EEEEECCCCC-EEEEEe
Q 011971 425 LYLAISPDGQ-TIVTGA 440 (474)
Q Consensus 425 ~~l~~spdg~-~l~t~s 440 (474)
.-+.+..+|+ ++++.+
T Consensus 519 ~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred ccEEEEeCCEEEEEEEc
Confidence 1244456776 444443
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=7.8e-06 Score=74.87 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=129.1
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--CcEEEecCCCCeEEEEecCCCCc-EEEEEecC-CEEEEEeCCCcEEE
Q 011971 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCKRVRTMEGHRLR-VGALAWSS-SLLSSGSRDKSILQ 274 (474)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d--g~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~-~~l~sgs~dg~I~i 274 (474)
++..+..........+.|+. +.++.+.+.. ..|+++|+.+++.+..+.-.... -..++..+ .+......++.+.+
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 44455434456678999986 4444444444 48999999999999887643322 13345544 45555567899999
Q ss_pred EECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC--C---CcEEEEEECCCCCcEE
Q 011971 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH--T---AAVKAIAWSPHLHGLL 349 (474)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h--~---~~V~~l~~sp~~~~ll 349 (474)
+|..+.+ .+.++.... .-.+++ +++..|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|. +| .++
T Consensus 90 ~D~~tl~-~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ly 163 (243)
T 3mbr_X 90 YDLATLT-PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELL 163 (243)
T ss_dssp EETTTTE-EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred EECCcCc-EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEE
Confidence 9998876 455544322 223444 56777777777899999999999888777532 1 345667766 44 466
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecCC--------------CCeEEEEEcCCCCeEEEE
Q 011971 350 ASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVST 395 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 395 (474)
+..- .+..|.+.|..+++.+..++.. .-.+.|+|+|+++.|+++
T Consensus 164 anvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 164 ANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 6653 5779999999999998887622 246889999998888886
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=6.9e-05 Score=81.24 Aligned_cols=273 Identities=11% Similarity=-0.010 Sum_probs=171.3
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecC------CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG------IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~------~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
.+.++...+ +++.++..+ .|++||..+++........ ....|.++....+|. |.+|+..+-|.++|..+.+
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence 466666665 556655554 8999998877665432111 245799999888775 6667775568889987665
Q ss_pred EEEEec--------------CCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeee--------cCcCCCEEEEE
Q 011971 242 RVRTME--------------GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL--------SGHKSEVCGLK 298 (474)
Q Consensus 242 ~~~~~~--------------~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~ 298 (474)
...... -....|.++..+ ...|..|+.++-|..++.....-..... ......|.++.
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 369 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC 369 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE
Confidence 332211 134578898887 4678888888889999877544111110 11235699998
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcceEEE---ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 299 ~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
..++|. |..|+.++-|.+||..++....-. ......|.++...+++. |.+.. .++-|..+|..+++......
T Consensus 370 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt---~~~Gl~~~~~~~~~~~~~~~ 444 (781)
T 3v9f_A 370 DDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGT---YLGNISYYNTRLKKFQIIEL 444 (781)
T ss_dssp ECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEE---TTEEEEEECSSSCEEEECCS
T ss_pred EcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEe---ccCCEEEEcCCCCcEEEecc
Confidence 887775 556666666899997654321110 12346789999988876 44422 55779999988775433221
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC-----CccEEEEEECCCCCEEEEEeCCCcEEE
Q 011971 376 ---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH-----TFRVLYLAISPDGQTIVTGAGDETLRF 447 (474)
Q Consensus 376 ---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~t~s~Dg~I~i 447 (474)
....|.++...+++...+. .. +-|.+|+..+++........ ...|.++...++|.+.+. +.++-|..
T Consensus 445 ~~~~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~ 519 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKNKKIWIG---TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGI 519 (781)
T ss_dssp TTTCCCCEEEEEECTTSEEEEE---ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEE
T ss_pred CCCCCCeEEEEEECCCCCEEEE---EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEE
Confidence 2456889988888875554 23 66889998766543332222 457999999999876654 44334666
Q ss_pred EeCCCC
Q 011971 448 WNVFPS 453 (474)
Q Consensus 448 W~l~~~ 453 (474)
|+...+
T Consensus 520 ~~~~~~ 525 (781)
T 3v9f_A 520 YTPDMQ 525 (781)
T ss_dssp ECTTCC
T ss_pred EeCCCC
Confidence 776543
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=4.7e-05 Score=79.57 Aligned_cols=262 Identities=12% Similarity=0.067 Sum_probs=161.2
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCC---CCEE-EEEEcC---CCC-EEEEEeC------CCcEEEecCCCCeE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGID---DSVC-SVGWAN---RNT-HLAVGTS------HGKVQIWDASRCKR 242 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~---~~V~-~v~~sp---~g~-~la~gs~------dg~I~iwd~~~~~~ 242 (474)
.+.+++...++.|+-+|+.+|+..-....... ..+. +..... +|+ .+++++. +|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45667777899999999999998766654321 0111 111111 233 6666653 78999999999998
Q ss_pred EEEecCCCCcE-----------------------------------------EEEEec--CCEEEEEeC-----------
Q 011971 243 VRTMEGHRLRV-----------------------------------------GALAWS--SSLLSSGSR----------- 268 (474)
Q Consensus 243 ~~~~~~h~~~V-----------------------------------------~~l~~~--~~~l~sgs~----------- 268 (474)
+.........+ ..++++ .++++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654321111 012232 256666653
Q ss_pred ---------C----CcEEEEECcCCcceEee-ecCcC--------CCEEEEEEe-cCCC---EEEEEeCCCcEEEEECCC
Q 011971 269 ---------D----KSILQRDIRAQEDFVSK-LSGHK--------SEVCGLKWS-YDNR---ELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 269 ---------d----g~I~iwd~~~~~~~~~~-~~~h~--------~~V~~l~~s-pd~~---~lasg~~Dg~v~iwd~~~ 322 (474)
| +.|..+|..+++..-.. ...|. .++. +... .+|+ .++.++.+|.++++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 57999999988743332 22232 1222 2222 4664 788899999999999999
Q ss_pred CcceEEEccCC-------------CcE--------------------------------EEEEECCCCCcEEEEec----
Q 011971 323 TQPVLKYCEHT-------------AAV--------------------------------KAIAWSPHLHGLLASGG---- 353 (474)
Q Consensus 323 ~~~~~~~~~h~-------------~~V--------------------------------~~l~~sp~~~~ll~sg~---- 353 (474)
++.+..+.... .++ ..++++|+...+++...
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 99887664331 000 13456666554544321
Q ss_pred --------------------------CCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 354 --------------------------GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 354 --------------------------Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
...++.|..||+.+++.+........+..-.....+..+++ |..|+.|+.||
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~D 513 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFD 513 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEEE
Confidence 01368899999999999887765544333222334666666 78999999999
Q ss_pred CCCCceeEEEcCCCccE-EEEEECCCCC-EEEEEeC
Q 011971 408 YPTMSKLATLTGHTFRV-LYLAISPDGQ-TIVTGAG 441 (474)
Q Consensus 408 ~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~t~s~ 441 (474)
..+++.+.++......+ .-+.|..+|+ ++++.+.
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 99999999887543321 1255666886 4444433
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=8.8e-05 Score=80.42 Aligned_cols=271 Identities=9% Similarity=-0.046 Sum_probs=173.7
Q ss_pred cceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEe-------c------CCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011971 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCD-------L------GIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~-------~------~~~~~V~~v~~sp~g~~la~gs~dg~I~ 233 (474)
..+.++.... +.+.++...+.|.+++..+++...... . -....|.++....+|. |.+|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 3467777766 455555554889999998876544322 0 1245799999998886 67788777799
Q ss_pred EecCCCCeEEEEec---------CCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeee----cCcCCCEEEEEE
Q 011971 234 IWDASRCKRVRTME---------GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKL----SGHKSEVCGLKW 299 (474)
Q Consensus 234 iwd~~~~~~~~~~~---------~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~ 299 (474)
.|+........... .....|.++.... ..|..|+.++-|..+|..+.. ...+ ......|.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~ 414 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKENRELLSNSVLCSLK 414 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC-----CCCSBEEEEEE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCCCCCCCcceEEEEE
Confidence 99877554322211 1235689998874 678888877789999976543 1111 123467899988
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcceEEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011971 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~ 376 (474)
.+++. |..|+.++-|..+|..+++.. .+. .....|.++...+++. +++.. . +-|..||..+++.......
T Consensus 415 d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 415 DSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGT---H-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp CTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEE---T-TEEEEEESSSSSCCEEECT
T ss_pred CCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEE---C-CceEEEeCCCCeEEecccC
Confidence 77775 455777677999998776532 232 1346799999988876 44432 3 5688999887654433221
Q ss_pred ------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC----CCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 377 ------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG----HTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 377 ------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
...|.++...++|...+.+ ..+-|..|+..+.+. ..+.. ....|.++...++|.+.++ +.+|.|.
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~ 562 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVC 562 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEE
T ss_pred cccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceE
Confidence 3568899999888876652 334577788765543 33321 2356899999989876554 4466557
Q ss_pred EEeCCCC
Q 011971 447 FWNVFPS 453 (474)
Q Consensus 447 iW~l~~~ 453 (474)
.||...+
T Consensus 563 ~~d~~~~ 569 (781)
T 3v9f_A 563 FPSARNF 569 (781)
T ss_dssp ESCTTTC
T ss_pred EECCCCC
Confidence 7776544
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=0.00015 Score=70.61 Aligned_cols=237 Identities=11% Similarity=0.001 Sum_probs=150.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeee
Q 011971 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 211 V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
.+|.+..++ .+|+.+. ...|+..++........+.. ...+..++|++ + ++++-...+.|..+++..... ....
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEE
Confidence 445555553 3455444 34688888876655444443 34578899973 4 445555678899999876542 2222
Q ss_pred cCcCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 288 SGHKSEVCGLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
........++++.+.+. ++++-...+.|.+.++........+...-.....++++|.+..|+.+..+ ..+.|..+++.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~~~I~r~~~d 190 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEASSMD 190 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CCCEEEEEeCC
Confidence 22334567899997554 45555567899999987654443343444567899999988878887652 23789999887
Q ss_pred CCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 367 TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 367 ~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
.......+. .-.....+++++++..|+.+ -...+.|..+++........+.........|++. ++...++-...+.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 543333322 23457899999988888875 4466899999986543333333334456778883 44445555566778
Q ss_pred EEEeCCCCC
Q 011971 446 RFWNVFPSP 454 (474)
Q Consensus 446 ~iW~l~~~~ 454 (474)
..++-..+.
T Consensus 269 ~~~~~~~G~ 277 (349)
T 3v64_C 269 NSANKFTGK 277 (349)
T ss_dssp EEEETTTCC
T ss_pred EEEEccCCC
Confidence 777754443
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.60 E-value=9e-05 Score=71.26 Aligned_cols=234 Identities=10% Similarity=0.007 Sum_probs=147.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCC--EEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEecCCCCeE-EEEecCCCCcE
Q 011971 178 HNVLAVGLGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKR-VRTMEGHRLRV 253 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la-~gs~dg~I~iwd~~~~~~-~~~~~~h~~~V 253 (474)
..+|..+....|+..++.+.. ..... .....+.+++|.+.+..|+ +-...+.|..++...... ...+...-...
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 445677777899999998764 22222 2234577899998655554 445567899998876531 11122111233
Q ss_pred EEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe--CCCcEEEEECCCCcceEE
Q 011971 254 GALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 254 ~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~--~Dg~v~iwd~~~~~~~~~ 328 (474)
..++++ . .++++-...+.|.++++..... ............+|++.|.+..|.... ..+.|...++........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 444443 3 4555666778899999876442 222234445689999999766666555 357899998864433322
Q ss_pred EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
+...-.....|++++++..|+.+-. ..+.|..+|+.......... .......+++. +..++.+ -...+.|..++
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywt-d~~~~~V~~~~ 235 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWT-DWSTHSILACN 235 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEE-ecCCCeEEEEE
Confidence 3333456789999998888888865 67899999987533322222 23456777775 3455554 55778999999
Q ss_pred CCCCceeEEEcC
Q 011971 408 YPTMSKLATLTG 419 (474)
Q Consensus 408 ~~~~~~~~~l~~ 419 (474)
..+++.+..+..
T Consensus 236 ~~~G~~~~~i~~ 247 (318)
T 3sov_A 236 KYTGEGLREIHS 247 (318)
T ss_dssp TTTCCSCEEEEC
T ss_pred CCCCCceEEEeC
Confidence 877776655543
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=5.2e-05 Score=72.77 Aligned_cols=231 Identities=9% Similarity=0.018 Sum_probs=137.2
Q ss_pred eeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecC------------------CCCCEEEEEEcC-CCCEEEEEeC
Q 011971 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLG------------------IDDSVCSVGWAN-RNTHLAVGTS 228 (474)
Q Consensus 170 v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~------------------~~~~V~~v~~sp-~g~~la~gs~ 228 (474)
...+.|++ ++++.++ .++.|+.|+..+++........ ....+..|++.+ +| .|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEEC
Confidence 45677877 5644444 5789999998877665433111 013578999998 55 4566655
Q ss_pred CCcEEEecCCCCeEEEEe---cC-CCCcEEEEEecC--CEEEEEeC------------------CCcEEEEECcCCcceE
Q 011971 229 HGKVQIWDASRCKRVRTM---EG-HRLRVGALAWSS--SLLSSGSR------------------DKSILQRDIRAQEDFV 284 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~---~~-h~~~V~~l~~~~--~~l~sgs~------------------dg~I~iwd~~~~~~~~ 284 (474)
.+.|..+|..+++..... .+ .......+++.+ ..|..+.. ++.|..+|..+.. +
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~ 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--T 177 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--E
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--E
Confidence 555888987765422211 11 113467777764 23433332 3668888876544 2
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEE-eCCCcEEEEECCCCc--ceEEEccCCCcEEEEEECCCCCcEEEEecC-------
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGG------- 354 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg-~~Dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G------- 354 (474)
..+...-....+|+|+++++.|..+ ...+.|.+|++.... ....+....+ ...+++.++|. ++++..+
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTT
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCccccccc
Confidence 2221122345689999999866555 556899999987531 1122222233 78899999987 5554321
Q ss_pred -CCCCeEEEEECCCCceeeeecCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 355 -TADRCIRFWNTTTNTHLSCMDTG-----SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 355 -t~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
...+.|..+|. .++.+..+... ..+..+++. ++ .|+++ ....+.|.++++.
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~-~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIG-TLFHGSVGILVYD 312 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEE-CSSCSEEEEEEC-
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CC-EEEEe-ecCCCceEEEecc
Confidence 01356888886 46766666532 346666663 44 45443 5567888888875
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.59 E-value=1.9e-06 Score=91.73 Aligned_cols=250 Identities=11% Similarity=0.057 Sum_probs=143.6
Q ss_pred eEEEEeCCCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeEEEEecCCCC--cEEEEEe-cCC
Q 011971 188 CVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHRL--RVGALAW-SSS 261 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~-~~~ 261 (474)
.+.+||..+++...+..+ .+.....++++..+|+++++|+. +..+.+||..+.+....-..+.. .-.+... ++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 689999999886655433 23334456788899999999984 45899999987765433222222 2334455 578
Q ss_pred EEEEEe-CC-----CcEEEEECcCCcceEeeecC-----cCCCEEEEEEecCCCEEEEEeCCC---------cEEEEECC
Q 011971 262 LLSSGS-RD-----KSILQRDIRAQEDFVSKLSG-----HKSEVCGLKWSYDNRELASGGNDN---------RLFVWNQH 321 (474)
Q Consensus 262 ~l~sgs-~d-----g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~spd~~~lasg~~Dg---------~v~iwd~~ 321 (474)
+++.|+ .+ ..+.+||..+.. ...+.. ....-....+..++..++.|+.+| .+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 888888 34 568999997654 122100 000000011223555556665443 56788887
Q ss_pred CCcceEEEccCC---------CcEEEEEECCCCCcEEEEecCCC------CC---eEEEEECCCCceeeee----cCCCC
Q 011971 322 STQPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTA------DR---CIRFWNTTTNTHLSCM----DTGSQ 379 (474)
Q Consensus 322 ~~~~~~~~~~h~---------~~V~~l~~sp~~~~ll~sg~Gt~------d~---~I~iwd~~~~~~~~~~----~~~~~ 379 (474)
+.........+. ..-.++.+...+..+++.||... -. .|.+||..+..-.... .....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 765333222111 12345555555566888876211 11 6788888776544332 22222
Q ss_pred eEEEEEcCCCCeEEEEEecCC-----------CeEEEEECCCCcee--EEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 380 VCNLVWSKNVNELVSTHGYSQ-----------NQIIVWRYPTMSKL--ATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~d-----------g~I~iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
-.+++..++++.+++ |+.+ ..+.+||..+.+-. ..+...........+.+||+.++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 345566788888777 5432 56899998764422 212212222234556799999999885
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.58 E-value=0.0005 Score=66.24 Aligned_cols=265 Identities=8% Similarity=0.009 Sum_probs=151.4
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.+..|.+.+ +.+++++..+.|+. ....++.-...... ....+.+|.+.+ +..+++ +..|.|.. ....++.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCce
Confidence 477888765 67788888887644 34444322222121 244789999986 444444 45664443 223333322
Q ss_pred Eec---CCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 245 TME---GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~---~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+. .+...+..+.+. +..++.++.+|.|.. ..+.+.........+...+..+.+.+++.+++++...+..+-+|-
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~ 191 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP 191 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC
Confidence 222 233456777764 455555566665533 222233233333455667899999999888776654433333442
Q ss_pred --CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeEEEEEcCCCCeEE
Q 011971 321 --HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNELV 393 (474)
Q Consensus 321 --~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~ 393 (474)
.+.+.+ -......+..+++.+++. +++.+ .+|.+++.+...++....+.. ...+..+.+.+++..++
T Consensus 192 gG~tW~~~--~~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (327)
T 2xbg_A 192 GQTAWEPH--NRTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL 265 (327)
T ss_dssp TCSSCEEE--ECCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred CCCceeEC--CCCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence 222322 124556788999999876 55554 477777765333444333322 23588899998777666
Q ss_pred EEEecCCCeEEEEECCCCceeEEEc---CCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLT---GHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
+ + .++.| .+....++.-..+. .+...+..+.|.+++ .++.++.+|.|.-++
T Consensus 266 ~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 266 A--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp E--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred E--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 5 4 46666 34444444433333 234567888887554 566777899876665
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=9.9e-05 Score=73.04 Aligned_cols=236 Identities=11% Similarity=0.011 Sum_probs=150.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeeec
Q 011971 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKLS 288 (474)
Q Consensus 212 ~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (474)
+|.+..+ ..+|+.+. ...|+.+++........+.. ...+..++|++ + ++++-...+.|..+++.... ....+.
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe
Confidence 3444444 33455444 45688888876655444443 34578899873 4 45555667889999987654 222222
Q ss_pred CcCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 289 GHKSEVCGLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 289 ~h~~~V~~l~~spd~~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
.......++++.+.+. ++++-...+.|.+.++........+.........++++|.+..|+.+..+ ..+.|..+++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG 234 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEASSMDG 234 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCEEEEEeCCC
Confidence 2334567889987554 44555567789999987554444443444678999999988888887642 237899998875
Q ss_pred CceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 368 NTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 368 ~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
......+.. -.....|+|++++..|+.+ -...+.|..+++........+.........|++ ..+..+++-...+.|.
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 312 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEE
Confidence 443333332 3457899999988888875 446788999998654433333333445677888 3444555555677888
Q ss_pred EEeCCCCC
Q 011971 447 FWNVFPSP 454 (474)
Q Consensus 447 iW~l~~~~ 454 (474)
.++...+.
T Consensus 313 ~~~~~~G~ 320 (386)
T 3v65_B 313 SANKFTGK 320 (386)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 88754443
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=0.00027 Score=67.31 Aligned_cols=219 Identities=9% Similarity=0.044 Sum_probs=135.4
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-cEEEecCCCCeEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G-KVQIWDASRCKRV 243 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g-~I~iwd~~~~~~~ 243 (474)
.+...++|++ ++++++. .++.|+.||..+ +....... ...+..+++.++|+++++.... + .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899987 5666666 468999999875 44444443 3578999999999965554332 2 4667777777654
Q ss_pred EEecC-CCCcEEEEE-ecCCEEEEE-eCCCcEEEEECcCCcceEee---------ecCcCCCEEEEEEecCCCEEEEE-e
Q 011971 244 RTMEG-HRLRVGALA-WSSSLLSSG-SRDKSILQRDIRAQEDFVSK---------LSGHKSEVCGLKWSYDNRELASG-G 310 (474)
Q Consensus 244 ~~~~~-h~~~V~~l~-~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~---------~~~h~~~V~~l~~spd~~~lasg-~ 310 (474)
..... .......++ |.+..++.. ..++.|..+|.......+.. ....-....+| +++++.|..+ .
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 33221 112223333 444444444 46889999997653211110 01112345666 7888766554 5
Q ss_pred CCCcEEEEECCC-Ccc--eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecCC-CCeEEEE
Q 011971 311 NDNRLFVWNQHS-TQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMDTG-SQVCNLV 384 (474)
Q Consensus 311 ~Dg~v~iwd~~~-~~~--~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~~~-~~v~~l~ 384 (474)
..+.|.++|+.. ++. ...+.. ......++++++|. ++++.. ..+.|.++|.. ++.. ..+... ....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 578899999874 321 122211 13456789999986 566543 46789999975 6553 234443 6689999
Q ss_pred Ec---CCCCeEEEEE
Q 011971 385 WS---KNVNELVSTH 396 (474)
Q Consensus 385 ~s---~~~~~l~~~~ 396 (474)
|. ++++.|+++.
T Consensus 262 ~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECCSTTTTTEEEEEE
T ss_pred EecccCCCCEEEEEC
Confidence 98 8988888854
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.51 E-value=0.0002 Score=77.29 Aligned_cols=239 Identities=10% Similarity=-0.064 Sum_probs=152.6
Q ss_pred eeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCCC----eEEEEe
Q 011971 172 LVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRC----KRVRTM 246 (474)
Q Consensus 172 ~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~~----~~~~~~ 246 (474)
+.+.....+|..+....|+..++.......+. .....+..|+|.+.+..|+.. ...+.|+.+++... .....+
T Consensus 389 C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 389 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp CEETTSCCEEEEECBSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred eeecccccccccccccceeEeeccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE
Confidence 34444455677777788999898877766665 345678899999865555544 45678888888753 223333
Q ss_pred cCCCCcEEEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC--CCcEEEEECC
Q 011971 247 EGHRLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQH 321 (474)
Q Consensus 247 ~~h~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~ 321 (474)
.........|+++ + +++++-...+.|.+.++..... ...+...-....+|++.|.+..|+.... .+.|.+.++.
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 3233344455554 4 5666666788999999876542 2223334456899999997666665543 3689999987
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEEEEec
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~ 398 (474)
.......+...-.....|++++.+..|+++-. ....|..+++........+... .....|++ .+..|+.+ -.
T Consensus 546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwt-D~ 620 (791)
T 3m0c_C 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DI 620 (791)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEE-ET
T ss_pred CCceEEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEE-EC
Confidence 55444344344467899999988888888765 5678999998755444433321 23455665 34466664 45
Q ss_pred CCCeEEEEECCCCceeEEEc
Q 011971 399 SQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 399 ~dg~I~iwd~~~~~~~~~l~ 418 (474)
..+.|...+..+++.+..+.
T Consensus 621 ~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 621 INEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTTCCCCEEEE
T ss_pred CCCEEEEEeCCCCcceEEee
Confidence 66788888877766555543
No 275
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.44 E-value=0.00094 Score=70.32 Aligned_cols=233 Identities=7% Similarity=-0.099 Sum_probs=152.5
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCCCeEEEEecCCCCcEEE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 255 (474)
|..+|..+..+.|+..++.+......+.+..-..+..|+|.+.+..|+.+ ..++.|..+++........+.........
T Consensus 5 p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 34567777889999999988776555544444678999999976666554 45788999988755443334322233445
Q ss_pred EEe--cC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCcceEEEc
Q 011971 256 LAW--SS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLKYC 330 (474)
Q Consensus 256 l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~~~~~~~~~~ 330 (474)
|++ .+ +++++-...+.|.+.++..... ...+...-....+|++.|....|..... .+.|...++........+
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 554 44 4556666678899999876542 2222234456799999996556655542 568888888755433333
Q ss_pred cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
..-.....|++++++..|+.+-. ..+.|..+|+.................+++.. ..++.+ -...+.|...|..+
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I~~~dk~t 237 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSIERANKTS 237 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEE-ETTTTEEEEEETTT
T ss_pred CCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEe-cCCCCEEEEEECCC
Confidence 44567889999998888888865 67889999987644322222334566777764 455554 45678888888766
Q ss_pred CceeEE
Q 011971 411 MSKLAT 416 (474)
Q Consensus 411 ~~~~~~ 416 (474)
++....
T Consensus 238 g~~~~~ 243 (628)
T 4a0p_A 238 GQNRTI 243 (628)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 654333
No 276
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.44 E-value=0.00096 Score=63.13 Aligned_cols=271 Identities=8% Similarity=0.009 Sum_probs=178.0
Q ss_pred eCCCCcEEEEEc----CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 174 DWSSHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 174 ~~s~~~~la~~~----d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
.+.+++++++-. +..|.|-|+..+..........+. .-.+|..+.||.-. ..+++|+|+++.+.+..+.-.
T Consensus 32 TmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~ 106 (365)
T 2xzh_A 32 TMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT 106 (365)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS
T ss_pred eeecCceEEEEecCCCCCEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC
Confidence 333455555543 237888888876554443333332 33588888887766 578999999999998887753
Q ss_pred CCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcC----CCEEEEEEecCCCEEEEEeC-------CCcEEE
Q 011971 250 RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK----SEVCGLKWSYDNRELASGGN-------DNRLFV 317 (474)
Q Consensus 250 ~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~spd~~~lasg~~-------Dg~v~i 317 (474)
..|.--.|- ++.|+..+. ..|+.|++.....+.+.+..|. ..|..-..+++.++++..|- .|.+.+
T Consensus 107 -e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 107 -DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp -SCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred -CccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 567777775 566666664 5899999987666666665553 46777788889998876542 367889
Q ss_pred EECCCCcceEEEccCCCcEEEEEECC--CCCcEEEEecC-CCCCeEEEEECCCC---ce-----eeeec-----CCCCeE
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSP--HLHGLLASGGG-TADRCIRFWNTTTN---TH-----LSCMD-----TGSQVC 381 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp--~~~~ll~sg~G-t~d~~I~iwd~~~~---~~-----~~~~~-----~~~~v~ 381 (474)
|..+.+. -+.+.+|.+....+.... ....|++.+.. ...+.+++-++... .. ...+. ...-..
T Consensus 185 YS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 185 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp EETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred Eeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 9987543 456677766554444332 12234444321 12358889888432 11 11111 123366
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
++..++....++.. ..-|.|++||+.++.++..-+-....|..-+...+..-++.....|.|.--.+++..
T Consensus 264 amqvs~kygviyvi--TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 264 AMQISEKHDVVFLI--TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEETTTTEEEEE--ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EEEecccCCEEEEE--eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 78888877777774 488999999999999998877777777766665554456666688888777766543
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00076 Score=64.61 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=143.0
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCC---cceEeeecCcCCCEE
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQ---EDFVSKLSGHKSEVC 295 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 295 (474)
+|+.+.. ..|+..|+...+....+. ....+..++|+. + ++++-..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4555543 468999988776655554 345678899973 3 4555556789999998761 211222222234568
Q ss_pred EEEEecCCC-EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 296 GLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 296 ~l~~spd~~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
++++.+.+. ++++-...+.|.++|+........+.........++++|.+..++.+..+ ..+.|..+++.........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCCCeEEEE
Confidence 899987554 44555667899999987544333333344567899999987778887642 2378888887543322222
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-c--CCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL-T--GHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 375 ~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~--~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
. .-.....+++++++..|+.+ -...+.|..+|+.... ...+ . ........|++. .+..+++-...+.|..++.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 2 33568899999998888875 4466799999986432 2222 2 122345677874 3445555556778888887
Q ss_pred CCCCC
Q 011971 451 FPSPK 455 (474)
Q Consensus 451 ~~~~~ 455 (474)
.++..
T Consensus 237 ~~g~~ 241 (316)
T 1ijq_A 237 LTGSD 241 (316)
T ss_dssp TTCCC
T ss_pred CCCcc
Confidence 65543
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00015 Score=72.82 Aligned_cols=235 Identities=7% Similarity=0.017 Sum_probs=140.0
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeC-CC----cEEEEECcCC
Q 011971 209 DSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR-DK----SILQRDIRAQ 280 (474)
Q Consensus 209 ~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~-dg----~I~iwd~~~~ 280 (474)
.....|+|+| ++..|+++...+.|+.+|...+....... .......++|+ ++.|+.+.. ++ .+...+....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3567899998 45566666655889999998776554443 45567889997 454555543 22 2333443322
Q ss_pred cceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 281 EDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
......+. ......+++++| ++.++++-..++.|+.+|...+....... ........++|+|+++.|+++.. ..+
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~--~~~ 292 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV--NQH 292 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTT
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--CCC
Confidence 11111222 123457788999 67766666678899999998765422222 22245678999999997777764 678
Q ss_pred eEEEEECCC--Cce--eeeecCC----------------CCeE-EEEEc--------CCCCeEEEEEecCCCeEEEEECC
Q 011971 359 CIRFWNTTT--NTH--LSCMDTG----------------SQVC-NLVWS--------KNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 359 ~I~iwd~~~--~~~--~~~~~~~----------------~~v~-~l~~s--------~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
.|..++... +.. ...+... .... .++.. +++..+++ -...+.|+.++ +
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~~i~-~ 369 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIRILT-P 369 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEEEEC-T
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEEEEC-C
Confidence 899987653 221 1111100 1123 44443 23444444 45667888888 4
Q ss_pred CCceeEEEcCC------------------CccEEEEEECCC-CCEEEEEeCCCcEEEEeCC
Q 011971 410 TMSKLATLTGH------------------TFRVLYLAISPD-GQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 410 ~~~~~~~l~~h------------------~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~l~ 451 (474)
++... .+.+. -.....|+++++ |.++++-.....|+.++++
T Consensus 370 ~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 55433 22221 114788999995 6555555566778887764
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.39 E-value=0.00096 Score=66.21 Aligned_cols=230 Identities=12% Similarity=0.003 Sum_probs=147.2
Q ss_pred CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE-EEEEeCCCcEEEEECcCCc---ceEeeecCcCCCE
Q 011971 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL-LSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEV 294 (474)
Q Consensus 221 ~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~-l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V 294 (474)
.+|+.+. ...|+..++........+. ....+..|+|+. +. +++-...+.|..+++.... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3455544 4678888888665444443 445678899973 44 4455567889888886521 1222333344568
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011971 295 CGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (474)
Q Consensus 295 ~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~ 373 (474)
.+|++.+. ++++++-...+.|.+.++........+.........|+++|.+..|+.+..| ..+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEE
Confidence 89999984 5555555667899999988665444444445568899999987778887632 346899999875444333
Q ss_pred ecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 374 MDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 374 ~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+.. -.....|++++++..|+.+ -...+.|..+|+........+.. .-.....|++. .+.++++-...+.|..++.
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 333 3568999999988888886 44678999999865433222222 23345677773 3334455556678888886
Q ss_pred CCCCC
Q 011971 451 FPSPK 455 (474)
Q Consensus 451 ~~~~~ 455 (474)
.++..
T Consensus 319 ~~G~~ 323 (400)
T 3p5b_L 319 LTGSD 323 (400)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 55543
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.37 E-value=0.00035 Score=67.06 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=143.4
Q ss_pred EEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEE
Q 011971 222 HLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (474)
+|+.+. ...|+.+++.... ....+. ....+..++|+. .++.+-...+.|..+++.........+...-....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 4578888887653 111222 223566888873 455566677889999987653211122222345678
Q ss_pred EEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 297 LKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 297 l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
+++.+. ++++++-...+.|.++++........+.........+++.|.+..|+.+..+ ..+.|..+++........+.
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEEEC
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEEEE
Confidence 999874 4455555567899999987554333333445667899999987777777532 35788888876433322222
Q ss_pred -CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 376 -TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 376 -~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.-.....+++++++..|+.+ -...+.|..+++........+.+.......+++.. +..+++-...+.|..++..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 23457899999988888875 45678999999864333222333344566777753 3344555566788888886665
Q ss_pred C
Q 011971 455 K 455 (474)
Q Consensus 455 ~ 455 (474)
.
T Consensus 241 ~ 241 (318)
T 3sov_A 241 G 241 (318)
T ss_dssp S
T ss_pred c
Confidence 4
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00032 Score=70.49 Aligned_cols=234 Identities=7% Similarity=-0.060 Sum_probs=142.0
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCC-----cEEEEECcC
Q 011971 209 DSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDK-----SILQRDIRA 279 (474)
Q Consensus 209 ~~V~~v~~sp~--g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg-----~I~iwd~~~ 279 (474)
.....|+|+|+ +..|+++...+.|+.+|..+++..... ........++++ ++ |+.+...+ .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 445666655588999999877765543 345568888887 35 44444321 233333322
Q ss_pred CcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEE-cc-CCCcEEEEEECCCCCcEEEEecCCC
Q 011971 280 QEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY-CE-HTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 280 ~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~-~~-h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
.......+. .-....++++++ ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|++..|+++.. .
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--~ 293 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--G 293 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--T
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--C
Confidence 111011111 234456788999 6766666667788999999877652222 11 1222347999999987887764 5
Q ss_pred CCeEEEEECC--CCcee--eeecC----------------CCCeEEEEE---------cCCCCeEEEEEecCCCeEEEEE
Q 011971 357 DRCIRFWNTT--TNTHL--SCMDT----------------GSQVCNLVW---------SKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 357 d~~I~iwd~~--~~~~~--~~~~~----------------~~~v~~l~~---------s~~~~~l~~~~g~~dg~I~iwd 407 (474)
.+.|..++.. ++... ..+.. -.....+++ ..++..+++ -...+.|+.++
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~~~ 371 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRVLT 371 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEEEC
Confidence 7889998765 33211 11110 123667888 566665555 55678899988
Q ss_pred CCCCceeEEEcCC------------------CccEEEEEEC-CCCCEEEEEeCCCcEEEEeCC
Q 011971 408 YPTMSKLATLTGH------------------TFRVLYLAIS-PDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 408 ~~~~~~~~~l~~h------------------~~~V~~l~~s-pdg~~l~t~s~Dg~I~iW~l~ 451 (474)
. ++. +.++.+. -.....|++. ++|.++++=.....|+.++++
T Consensus 372 ~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4 553 3333221 1236789999 577666666667788887764
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.31 E-value=0.00081 Score=62.16 Aligned_cols=196 Identities=14% Similarity=0.174 Sum_probs=130.9
Q ss_pred CCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC-CEE-EEEeCCCcEEEEECcCCc
Q 011971 206 GIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS-SLL-SSGSRDKSILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~-~~l-~sgs~dg~I~iwd~~~~~ 281 (474)
+-.+.+..++|+|+++.| ++...++.|...|.. ++.++.+. +-....-.|++.+ +.+ ++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 445689999999986644 557778899999988 88887774 2235677778763 444 444466788888876544
Q ss_pred c--eEeee------cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC---CCcceEEEc-------cCCCcEEEEEECC
Q 011971 282 D--FVSKL------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---STQPVLKYC-------EHTAAVKAIAWSP 343 (474)
Q Consensus 282 ~--~~~~~------~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~---~~~~~~~~~-------~h~~~V~~l~~sp 343 (474)
. .+... ........+|+|+|.++.|.++.+.....||.+. ....+..+. .+...+.+++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 11111 1234567999999999877777765554555443 111222221 1334578999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 344 ~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
....+++... .++.|..+|.. ++.+..+... .+...|+|.++|+..++ ++.+.+++|.-
T Consensus 183 ~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~~ 251 (255)
T 3qqz_A 183 QKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEEC
T ss_pred CCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEEe
Confidence 8888888876 78999999966 5566555432 37899999999985444 36676666653
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=8.6e-05 Score=80.19 Aligned_cols=238 Identities=10% Similarity=0.024 Sum_probs=132.2
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEecCCCC-eEEEE-ecCCCCcEEEEEecC--CEEEEEeCC-----CcEEE
Q 011971 210 SVCSVGWA-NRNTHLAVGTS-HG----KVQIWDASRC-KRVRT-MEGHRLRVGALAWSS--SLLSSGSRD-----KSILQ 274 (474)
Q Consensus 210 ~V~~v~~s-p~g~~la~gs~-dg----~I~iwd~~~~-~~~~~-~~~h~~~V~~l~~~~--~~l~sgs~d-----g~I~i 274 (474)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+.. +. .....++|++ +.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998887654 23 4999999988 63211 11 1134678874 456655554 35888
Q ss_pred EECcCCcce-Eeeec-CcCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCc-ce--EEEc-cCCCcEEEEEECCCC
Q 011971 275 RDIRAQEDF-VSKLS-GHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQ-PV--LKYC-EHTAAVKAIAWSPHL 345 (474)
Q Consensus 275 wd~~~~~~~-~~~~~-~h~~~V~~l~~spd~~~lasg~~---Dg~v~iwd~~~~~-~~--~~~~-~h~~~V~~l~~sp~~ 345 (474)
+++.+.... ...+. .......++.|+|||++|+.... ...|+++|+.++. .. ..+. ........+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 23345678899999999887653 4468999998763 22 3333 3344556666554 5
Q ss_pred CcEEEEecC--CCCCeEEEEECCCC-ceee-eecCCCC--eEEEEEcCCCCeEEEEEecCCC--eEEEEEC-------CC
Q 011971 346 HGLLASGGG--TADRCIRFWNTTTN-THLS-CMDTGSQ--VCNLVWSKNVNELVSTHGYSQN--QIIVWRY-------PT 410 (474)
Q Consensus 346 ~~ll~sg~G--t~d~~I~iwd~~~~-~~~~-~~~~~~~--v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~-------~~ 410 (474)
..|++.... .....|..+|+.++ .... .+..... +..+.+ .++.|+.. ...++ .|.++++ ..
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~~ 407 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA-GRRAGLTRIWTMMADSQDGVFKA 407 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE-EEETTEEEEEEEECCTTTSCCCT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE-EEeCCEEEEEEEecccccccccC
Confidence 556555431 12346778887653 2222 3333333 344444 45666654 44566 4556665 33
Q ss_pred CceeEEEcCC-CccEEEEEE----CCCCC-EEEEEeCC---CcEEEEeCCCCC
Q 011971 411 MSKLATLTGH-TFRVLYLAI----SPDGQ-TIVTGAGD---ETLRFWNVFPSP 454 (474)
Q Consensus 411 ~~~~~~l~~h-~~~V~~l~~----spdg~-~l~t~s~D---g~I~iW~l~~~~ 454 (474)
++.+..+... ...+..+.+ ++++. ++++.+.. ..++.+|+.++.
T Consensus 408 g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 408 GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3313333211 122333432 34554 44444433 356667766543
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=0.00016 Score=77.98 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=131.6
Q ss_pred ceeeeeCC-C-CcEEEEEcC--C----eEEEEeCCCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 011971 169 YLNLVDWS-S-HNVLAVGLG--N----CVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQI 234 (474)
Q Consensus 169 ~v~~l~~s-~-~~~la~~~d--~----~V~lwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-----g~I~i 234 (474)
.+....|| | ++.|+.+.+ | .|+++|+.++ +.+.. .+ ......++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 8 666776543 2 4999999998 63211 00 1123468899999988877765 25788
Q ss_pred ecCCCCe--EEEEec-CCCCcEEEEEecC--CEEEEEe---CCCcEEEEECcCCc-ce--EeeecCcCCCEEEEEEecCC
Q 011971 235 WDASRCK--RVRTME-GHRLRVGALAWSS--SLLSSGS---RDKSILQRDIRAQE-DF--VSKLSGHKSEVCGLKWSYDN 303 (474)
Q Consensus 235 wd~~~~~--~~~~~~-~h~~~V~~l~~~~--~~l~sgs---~dg~I~iwd~~~~~-~~--~~~~~~h~~~V~~l~~spd~ 303 (474)
+++.++. ....+. ........+.|++ .+|+..+ ....|.++|+.++. .. ............++.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 8887653 122222 2234456788884 5555444 23468888887653 22 222233445556666554 5
Q ss_pred CEEEEEeC-C----CcEEEEECCCCcceEE-EccCCC--cEEEEEECCCCCcEEEEecCCCCCe--EEEEEC-------C
Q 011971 304 RELASGGN-D----NRLFVWNQHSTQPVLK-YCEHTA--AVKAIAWSPHLHGLLASGGGTADRC--IRFWNT-------T 366 (474)
Q Consensus 304 ~~lasg~~-D----g~v~iwd~~~~~~~~~-~~~h~~--~V~~l~~sp~~~~ll~sg~Gt~d~~--I~iwd~-------~ 366 (474)
..|+..++ + ..|..+|+.++..... +..+.. .+..+.+. +..++++.. .++. |.++|+ .
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECCTTTSCCC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEeccccccccc
Confidence 55544433 3 3678888765322122 223333 34555554 566777764 5665 566675 3
Q ss_pred CCceeeeecCCCC--eEEEEE----cCCCCeEEEEEecCC--CeEEEEECCCCc
Q 011971 367 TNTHLSCMDTGSQ--VCNLVW----SKNVNELVSTHGYSQ--NQIIVWRYPTMS 412 (474)
Q Consensus 367 ~~~~~~~~~~~~~--v~~l~~----s~~~~~l~~~~g~~d--g~I~iwd~~~~~ 412 (474)
+++....+..... +..+.+ +.++..++.+..+.. ..+..+|+.+++
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4431344433333 333433 456666655433222 467777776664
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.24 E-value=3.9e-06 Score=89.80 Aligned_cols=246 Identities=10% Similarity=-0.061 Sum_probs=147.0
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCC----CeEEEEecCCCC
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR----CKRVRTMEGHRL 251 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~----~~~~~~~~~h~~ 251 (474)
+..+|..+..+.|++.++.+.+...++. ....+..|+|.+.+..|+... ..+.|+.+++.. ......+.....
T Consensus 376 ~~~~ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 376 SIAYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp SCCCBCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred cceeEEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 3344555556788888988877665542 335677899998777666654 457899998875 222222221112
Q ss_pred cEEEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCcce
Q 011971 252 RVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPV 326 (474)
Q Consensus 252 ~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~~~~~~ 326 (474)
....|++. . .++++-...+.|.++++.... ....+........+|+++|.+.+|+.... .+.|.++++......
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee
Confidence 23445554 3 455555667889999987544 22222222345678899986655554432 268888887643332
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
..+...-.....|+|+|++..|+++-. ..+.|..+++........+.. ......|++.. ..|+.+ ....+.|
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt-d~~~~~V 607 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-DIINEAI 607 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE-CSTTTCE
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE-eCCCCeE
Confidence 222223345678999999888888875 578899999865333222221 12344555544 355554 4567899
Q ss_pred EEEECCCCceeEEEcCCCccEEEEEEC
Q 011971 404 IVWRYPTMSKLATLTGHTFRVLYLAIS 430 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~~h~~~V~~l~~s 430 (474)
..++..+++.+..+.........|++.
T Consensus 608 ~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 608 FSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEEEccCCCceEEeecCCCCCcEEEEe
Confidence 999988888777665433334444443
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.0023 Score=59.10 Aligned_cols=198 Identities=12% Similarity=0.164 Sum_probs=129.4
Q ss_pred EecCCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeeec-CcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+.+-...+..++|++ + ++++...++.|...|.. +. .+..+. .-.....+|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4556667899999984 4 55567788899999987 44 444432 22356889999998877677666788999987
Q ss_pred CCCcc---eEEEc------cCCCcEEEEEECCCCCcEEEEecCCCCC-eEEEEEC-CCCceeeeec--------CCCCeE
Q 011971 321 HSTQP---VLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADR-CIRFWNT-TTNTHLSCMD--------TGSQVC 381 (474)
Q Consensus 321 ~~~~~---~~~~~------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~-~I~iwd~-~~~~~~~~~~--------~~~~v~ 381 (474)
..... +.... ........|+|+|.+..|+++.. .+. .|..|+- .....+..+. .-..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 65442 22221 13445689999999888888764 233 5555651 1111122111 123578
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC---------ccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT---------FRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
.+++.|....+++. ....+.|.++|.. ++.+..+.-.. ..-..|+|.++|+..+ .++-+.++.+.
T Consensus 177 ~l~~dp~tg~lliL-S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVL-SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEE-ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred eEEEcCCCCeEEEE-ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence 99999988877776 5678899999965 55555543221 2568899999997444 46666555443
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.0013 Score=66.78 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=143.8
Q ss_pred CEEEEEEcC-CCCEEEEEeC-CCcEEEecCCCCeEEEEecC---CCCcEEEEEe-------c--CCEEEEEeCCC-c---
Q 011971 210 SVCSVGWAN-RNTHLAVGTS-HGKVQIWDASRCKRVRTMEG---HRLRVGALAW-------S--SSLLSSGSRDK-S--- 271 (474)
Q Consensus 210 ~V~~v~~sp-~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~-------~--~~~l~sgs~dg-~--- 271 (474)
....|+|.| ++..|+++.. .+.|++.|...+.....+.. .......++| + ++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 577899998 3544555544 46799999888776665543 2346899999 5 46566665554 2
Q ss_pred ---EEEEECcCCcceE-----eeecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECC-------CCcc----------
Q 011971 272 ---ILQRDIRAQEDFV-----SKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQH-------STQP---------- 325 (474)
Q Consensus 272 ---I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~-------~~~~---------- 325 (474)
|.+++........ ..+.. -....+++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 6666533311111 12211 123457788994 5556666678889999987 4443
Q ss_pred -eEE-Ec-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCcee--eeec-C---C------------CCeE-
Q 011971 326 -VLK-YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT--TTNTHL--SCMD-T---G------------SQVC- 381 (474)
Q Consensus 326 -~~~-~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~--~~~~~~--~~~~-~---~------------~~v~- 381 (474)
... +. ........|+|+|++..|+++-. ....|+.++. ..+... ..+. . . ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 21 22344679999999987777754 5788888654 333210 1111 0 0 1244
Q ss_pred EEEEc-------CCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC------------------------CccEEEEEEC
Q 011971 382 NLVWS-------KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH------------------------TFRVLYLAIS 430 (474)
Q Consensus 382 ~l~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h------------------------~~~V~~l~~s 430 (474)
.++.. .++..+++ -...+.|+.++ +++. +.++-+. -.....|++.
T Consensus 377 gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 34443 34444444 55678999998 5563 4444321 1236789999
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 431 PD-GQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 431 pd-g~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
++ |.++++=.....||.+++.........
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 97 766666667788999999876655443
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.00056 Score=65.80 Aligned_cols=191 Identities=12% Similarity=0.175 Sum_probs=126.8
Q ss_pred CCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCC---------EEEEEeC---CCcEEEEECcCCcceEeee
Q 011971 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS---------LLSSGSR---DKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~---------~l~sgs~---dg~I~iwd~~~~~~~~~~~ 287 (474)
..+++.....+-+.+||+ +++.+..+.. ++++.+..-+. ++++..+ +++|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555566788999999 7888888864 45565555432 3344444 4789999774322224333
Q ss_pred cC------cC-CCEEEEEE--ecC-CC-EEEEEeCCCcEEEEECC-------CCcceEEEccCCCcEEEEEECCCCCcEE
Q 011971 288 SG------HK-SEVCGLKW--SYD-NR-ELASGGNDNRLFVWNQH-------STQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 288 ~~------h~-~~V~~l~~--spd-~~-~lasg~~Dg~v~iwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (474)
.. .. ..+.++++ ++. +. ++++...+|.+..|++. +.+.+.+|.. .+.+..++..+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 12 56778888 664 43 67788889999999883 2345666643 46788999998877777
Q ss_pred EEecCCCCCeEEEEECC-----CCceeeeecCC---CCeEEEEE--cCCCC-eEEEEEecCCCeEEEEECC-CCceeEEE
Q 011971 350 ASGGGTADRCIRFWNTT-----TNTHLSCMDTG---SQVCNLVW--SKNVN-ELVSTHGYSQNQIIVWRYP-TMSKLATL 417 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~-----~~~~~~~~~~~---~~v~~l~~--s~~~~-~l~~~~g~~dg~I~iwd~~-~~~~~~~l 417 (474)
+.- ++.-|..++.. +++.+..+..+ ..+..|++ .++++ +|+++ .-.++.+.+||.. +.+.+..|
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEEEE
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECCCCCcEEEEE
Confidence 754 67667777755 34555555433 56888888 45666 56664 4467899999996 67777777
Q ss_pred c
Q 011971 418 T 418 (474)
Q Consensus 418 ~ 418 (474)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 4
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.00082 Score=67.38 Aligned_cols=231 Identities=9% Similarity=0.077 Sum_probs=132.2
Q ss_pred eeeeeCCC---CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C----cEEEecCCCC-
Q 011971 170 LNLVDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G----KVQIWDASRC- 240 (474)
Q Consensus 170 v~~l~~s~---~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g----~I~iwd~~~~- 240 (474)
...|++++ ++++++...+.|+.+|..++.+..+.. .......|+|+++|++|+++... + .+.+++....
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 45566774 455555555899999998887766653 45678999999999966666542 2 2333432211
Q ss_pred eEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE-EEEeCCCcEE
Q 011971 241 KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLF 316 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-asg~~Dg~v~ 316 (474)
.....+.. ......+++++ .++++-..++.|..++...................+|+|+|++++| ++-...+.|.
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 11122221 12344566653 4555556778899999876542111111222457899999999954 5555678899
Q ss_pred EEECCC--Ccc--eEEEccC---------------CCcEE-EEEEC--------CCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 317 VWNQHS--TQP--VLKYCEH---------------TAAVK-AIAWS--------PHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 317 iwd~~~--~~~--~~~~~~h---------------~~~V~-~l~~s--------p~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
.++... +.. +..+.+. -.... .++.. +++ .|+++-. ..+.|+.++ .+|
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~--~n~~I~~i~-~~G 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDR--ENHCIRILT-PQG 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEG--GGTEEEEEC-TTS
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEEC--CCcEEEEEC-CCC
Confidence 988653 211 1222111 01122 45553 233 3666543 467788888 445
Q ss_pred ceeeeecC---------C---------CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 369 THLSCMDT---------G---------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 369 ~~~~~~~~---------~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
........ . .....+++++++..|+++ -...+.|+.++.
T Consensus 372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~ 428 (430)
T 3tc9_A 372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEcc
Confidence 44333221 0 147889999865555553 445667777664
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.13 E-value=0.00093 Score=67.07 Aligned_cols=229 Identities=6% Similarity=0.019 Sum_probs=129.5
Q ss_pred eeeeeCCC----CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEecCCCC
Q 011971 170 LNLVDWSS----HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRC 240 (474)
Q Consensus 170 v~~l~~s~----~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg-----~I~iwd~~~~ 240 (474)
...++|++ ++++.+-..+.|+.++..++++..+. ........|+|+++|+ |+++...+ .+...+...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 45677886 45555544489999999888877664 3456789999999999 55554322 1333332211
Q ss_pred eE-EEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeee-cCcCCCEEEEEEecCCCEEE-EEeCCCc
Q 011971 241 KR-VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELA-SGGNDNR 314 (474)
Q Consensus 241 ~~-~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spd~~~la-sg~~Dg~ 314 (474)
.. ...+. .-.....+++++ .++++-..++.|..+|..++......+ .+....-..|+|+|+++.|. +-...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 10 01111 112234455553 444455567789999887554211111 11222335799999999554 4455688
Q ss_pred EEEEECCC--Ccc--eEEEccC---------------CCcEEEEEE---------CCCCCcEEEEecCCCCCeEEEEECC
Q 011971 315 LFVWNQHS--TQP--VLKYCEH---------------TAAVKAIAW---------SPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 315 v~iwd~~~--~~~--~~~~~~h---------------~~~V~~l~~---------sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
|+.++... +.. ...+.+. -.....+++ .+++. |+++-. ..+.|+.++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~--~n~~I~~~~~- 372 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDR--DSHTVRVLTP- 372 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEET--TTTEEEEECT-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEEC--CCCEEEEECC-
Confidence 99988652 321 1222111 123567898 56554 666654 5778999985
Q ss_pred CCceeeeecCC------------------CCeEEEEEc-CCCCeEEEEEecCCCeEEEEEC
Q 011971 367 TNTHLSCMDTG------------------SQVCNLVWS-KNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 367 ~~~~~~~~~~~------------------~~v~~l~~s-~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
+|........+ .....|+++ +++..+++ -...+.|+.+++
T Consensus 373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAP 431 (433)
T ss_dssp TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEE
T ss_pred CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEec
Confidence 45433222111 236778888 44444444 445667777665
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=5.6e-05 Score=80.31 Aligned_cols=260 Identities=13% Similarity=0.063 Sum_probs=141.7
Q ss_pred EEEEeCCCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCC-----------cEEEecCCCCeE--EEEec-CCCCcE
Q 011971 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHG-----------KVQIWDASRCKR--VRTME-GHRLRV 253 (474)
Q Consensus 189 V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg-----------~I~iwd~~~~~~--~~~~~-~h~~~V 253 (474)
+..+|..+++...+..+.. .-.++++.+ +|+.++.|+.+. .+.+||..+++. +..+. .+....
T Consensus 168 ~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~ 245 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC 245 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred cccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence 3344555666665555432 223566777 888888887542 588999987653 22232 222223
Q ss_pred EEEE--ecCCEEEEEeC-CCcEEEEECcCCcceEee--ecCcCCCEEEEEEecCCCEEEEEe-CC-----CcEEEEECCC
Q 011971 254 GALA--WSSSLLSSGSR-DKSILQRDIRAQEDFVSK--LSGHKSEVCGLKWSYDNRELASGG-ND-----NRLFVWNQHS 322 (474)
Q Consensus 254 ~~l~--~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spd~~~lasg~-~D-----g~v~iwd~~~ 322 (474)
.+++ .++.+++.|+. +..+.+||..+.. .... +..... -.+++..++++.++.|+ .+ ..+.+||..+
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~-W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDS-WIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTE-EEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCc-eeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 2333 35788888884 5589999988754 1111 111111 13445567999999998 44 5699999987
Q ss_pred CcceEEE----ccCCCcEEEEEECCCCCcEEEEecCC-------CCCeEEEEECCCCceeeeecCC----------CCeE
Q 011971 323 TQPVLKY----CEHTAAVKAIAWSPHLHGLLASGGGT-------ADRCIRFWNTTTNTHLSCMDTG----------SQVC 381 (474)
Q Consensus 323 ~~~~~~~----~~h~~~V~~l~~sp~~~~ll~sg~Gt-------~d~~I~iwd~~~~~~~~~~~~~----------~~v~ 381 (474)
.+-...- ......-....+..++. +++.|+.. ....+..||..+.......... ..-.
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CcceeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 6533210 00000000011122333 44444310 1345788898876543322211 1234
Q ss_pred EEEEcCCCCeEEEEEecCCC-----------eEEEEECCCCceeEEE--cCCCccE-EEEEECCCCCEEEEEeCC-----
Q 011971 382 NLVWSKNVNELVSTHGYSQN-----------QIIVWRYPTMSKLATL--TGHTFRV-LYLAISPDGQTIVTGAGD----- 442 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg-----------~I~iwd~~~~~~~~~l--~~h~~~V-~~l~~spdg~~l~t~s~D----- 442 (474)
.+.|...+..|++. |+.++ .|.+||..+..-.... ..+..+. .+++..|+|++++.|+.+
T Consensus 403 av~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 403 AVMYDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred eEeccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 45555544455554 44321 6778887765544332 2233333 345677899999998854
Q ss_pred ------CcEEEEeCCCCC
Q 011971 443 ------ETLRFWNVFPSP 454 (474)
Q Consensus 443 ------g~I~iW~l~~~~ 454 (474)
..+.+||.....
T Consensus 482 ~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCSBCCCCEEEEGGGTE
T ss_pred CCCCcccceEEEcCCCCc
Confidence 468899886543
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.09 E-value=0.0025 Score=66.89 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=137.9
Q ss_pred cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeE-EEEecCCCCcEEEE
Q 011971 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKR-VRTMEGHRLRVGAL 256 (474)
Q Consensus 179 ~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~-~~~~~~h~~~V~~l 256 (474)
.+|.-+..+.|+..++.............-..+..|+|++.+..|+.+.. .+.|..++++.... ...+...-.....|
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 34566667888998887653222222234567889999997776666554 67888888875532 23333333456677
Q ss_pred Eec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCcceEEEcc
Q 011971 257 AWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLKYCE 331 (474)
Q Consensus 257 ~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~~~~~~~~~~~ 331 (474)
+++ + +++++-...+.|.+.++..... .......-....+|++.|.+..|..... .+.|...++...........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 765 3 4555666778999999876542 2222234455789999997666655543 46777778765443333333
Q ss_pred CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 332 h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
.-.....|++++++..|+.+-. ..+.|..+|+.......... .......+++..+ .++.+ -...+.|...|..+
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILACNKYT 243 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEEESSS
T ss_pred CCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEEECCC
Confidence 4456789999998888888865 57889999986543322222 1223445666544 55554 45677888888766
Q ss_pred CceeE
Q 011971 411 MSKLA 415 (474)
Q Consensus 411 ~~~~~ 415 (474)
++...
T Consensus 244 g~~~~ 248 (619)
T 3s94_A 244 GEGLR 248 (619)
T ss_dssp CCCCE
T ss_pred CcccE
Confidence 65433
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.0059 Score=65.84 Aligned_cols=228 Identities=11% Similarity=0.005 Sum_probs=143.3
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEE
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVC 295 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 295 (474)
+|+... ...|+..++........+. ....+..|+|+. .++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4568888887665444444 345567888863 355555667788888887531 12233333445677
Q ss_pred EEEEecCCC-EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 296 GLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 296 ~l~~spd~~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
+|++.+.++ ++++-...+.|.+.++........+.........|++.|....|+.+-.| ..+.|...++........+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEE
Confidence 899998765 45555567899999997554433333445568999999987778887642 3378999998755544444
Q ss_pred cCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCCCEEEEE-eCCCcEEEEeC
Q 011971 375 DTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDGQTIVTG-AGDETLRFWNV 450 (474)
Q Consensus 375 ~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~t~-s~Dg~I~iW~l 450 (474)
... .....|++++.+..|+.+ -...+.|..+++........+.. .-.....|++. +..|+.+ ...+.|...+.
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred eCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence 433 578999999888888886 34567899999865444333332 22334567763 3355544 45567777776
Q ss_pred CCCCC
Q 011971 451 FPSPK 455 (474)
Q Consensus 451 ~~~~~ 455 (474)
..+..
T Consensus 631 ~tG~~ 635 (791)
T 3m0c_C 631 LTGSD 635 (791)
T ss_dssp TTCCC
T ss_pred CCCcc
Confidence 65543
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.06 E-value=0.011 Score=58.06 Aligned_cols=270 Identities=9% Similarity=0.033 Sum_probs=179.0
Q ss_pred CCCCcEEEEEc----CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC
Q 011971 175 WSSHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (474)
Q Consensus 175 ~s~~~~la~~~----d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~ 250 (474)
+.+++++++-. +..|.|-|+.++..........+ +.-.+|..+.||.=. ..+++|+|+++...+..+.-..
T Consensus 32 mESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e 106 (494)
T 1bpo_A 32 MESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD 106 (494)
T ss_dssp EEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS
T ss_pred eecCceEEEEecCCCCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC
Confidence 33455555542 34788888877655433333222 344678888777765 6789999999999988877544
Q ss_pred CcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcC----CCEEEEEEecCCCEEEEEeC-------CCcEEEE
Q 011971 251 LRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK----SEVCGLKWSYDNRELASGGN-------DNRLFVW 318 (474)
Q Consensus 251 ~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~spd~~~lasg~~-------Dg~v~iw 318 (474)
.|.--.|- ++.|+..+. ..|+.|++.....+++.+..|. ..|..-..+++.++++..|- .|.+.+|
T Consensus 107 -~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 107 -DVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp -CCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -CceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 56566664 677766654 5899999987666666665553 46777788899999875442 4678899
Q ss_pred ECCCCcceEEEccCCCcEEEEEECCC--CCcEEEEecC-CCCCeEEEEECCCC---ce---eeeec-------CCCCeEE
Q 011971 319 NQHSTQPVLKYCEHTAAVKAIAWSPH--LHGLLASGGG-TADRCIRFWNTTTN---TH---LSCMD-------TGSQVCN 382 (474)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~--~~~ll~sg~G-t~d~~I~iwd~~~~---~~---~~~~~-------~~~~v~~ 382 (474)
..+.+. -+.+.+|.+....+....+ ...+++.+.- ...+.+++.++... .. ....+ ...-...
T Consensus 185 S~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 185 SVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp ESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred eccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 987543 4567788776655554422 1234444421 12378999988543 11 11111 1233677
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 383 LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+..++....++.. ..-|.|++||+.++.++..-+-....|..-+......-++.....|.|.--.+++..
T Consensus 264 mqvs~kygviyvi--TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 264 MQISEKHDVVFLI--TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEETTTTEEEEE--ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EEecccCCEEEEE--ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 8888888877774 488999999999999998877777777776666655566667788888777766543
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0018 Score=63.00 Aligned_cols=224 Identities=12% Similarity=0.151 Sum_probs=126.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE--EEEec---CCCCcEEEEEecCC-----EEEEEeCC------Cc
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--VRTME---GHRLRVGALAWSSS-----LLSSGSRD------KS 271 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~--~~~~~---~h~~~V~~l~~~~~-----~l~sgs~d------g~ 271 (474)
-.....|+|.|+|+ |+++...|.|.+++ +++. +..+. ........|+++++ .|+.+... +.
T Consensus 30 l~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34678999999998 45556679999998 3432 22221 22456889999865 55555432 56
Q ss_pred EEEEECcCCc-----ceEeeec---CcCCCEEEEEEecCCCEEEEEeC-------------CCcEEEEECCC--------
Q 011971 272 ILQRDIRAQE-----DFVSKLS---GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHS-------- 322 (474)
Q Consensus 272 I~iwd~~~~~-----~~~~~~~---~h~~~V~~l~~spd~~~lasg~~-------------Dg~v~iwd~~~-------- 322 (474)
|..++..... ..+..+. ........|+|.|||.++++.+. .|.|.-++...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7788776421 1122122 11123468999999977666432 15666666543
Q ss_pred ------CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC-------eEEEEECCC----------------Cceeee
Q 011971 323 ------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR-------CIRFWNTTT----------------NTHLSC 373 (474)
Q Consensus 323 ------~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~-------~I~iwd~~~----------------~~~~~~ 373 (474)
...+... ++. ....++|+|+...|+++-.| .+. .|.+..... ...+..
T Consensus 187 ~~~~~~~~~i~a~-G~r-np~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 187 LGRRGARPEVYSL-GHR-NPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTCTTSCTTEEEE-CCS-EECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cCCCCCCccEEEE-cCC-CcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 1112221 332 35789999954457766543 232 244332111 012222
Q ss_pred ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------eEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK------LATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 374 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
+........++| .++..+++ ....+.|...++..... ...+..-..++..+++.|||.+.++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 333345677777 35555544 55667788777754321 122222346789999999998766653
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.01 E-value=0.0071 Score=58.02 Aligned_cols=228 Identities=10% Similarity=0.060 Sum_probs=129.7
Q ss_pred CcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcE-EEecCCCCeEE
Q 011971 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKV-QIWDASRCKRV 243 (474)
Q Consensus 167 d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~dg~I-~iwd~~~~~~~ 243 (474)
+..+..+.+.++.+++++..+.|+. ....++.-..... .+.+.+..|.+.+++..++++ .+|.| +-.| .++.-
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW 154 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNW 154 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSE
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCC
Confidence 3457777887777888887776665 3333443222222 133567888887777766655 45544 3333 23222
Q ss_pred -EEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 244 -RTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 244 -~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.....+...+..+.+.+ ..++..+.+|.+..-+-..+......-......+..+.+.+++..+ .++.+|.+++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPD 233 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETT
T ss_pred EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCC
Confidence 22334566788888873 3444455556554432111121222223455678899999988765 45567888877533
Q ss_pred CCcceEEEc----cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeEEEEEcCCCCeEE
Q 011971 322 STQPVLKYC----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 322 ~~~~~~~~~----~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~ 393 (474)
.++.-..+. .+...+.++++.+++. +++++ .++.| ++....|+.-..+. ....+..+.|..++..++
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g---~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG---GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE---STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe---CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 232211111 1223588999998755 66665 36766 45555565554443 235678888875555444
Q ss_pred EEEecCCCeEEEEE
Q 011971 394 STHGYSQNQIIVWR 407 (474)
Q Consensus 394 ~~~g~~dg~I~iwd 407 (474)
+ | .+|.|.-++
T Consensus 309 ~--G-~~G~i~~~~ 319 (327)
T 2xbg_A 309 L--G-QKGILLRYV 319 (327)
T ss_dssp E--C-STTEEEEEC
T ss_pred E--c-CCceEEEEc
Confidence 3 3 678776655
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0022 Score=61.63 Aligned_cols=182 Identities=11% Similarity=0.192 Sum_probs=119.7
Q ss_pred CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC----CC---EEEEEe-C--CCcEEEEECC-CCcceEEE
Q 011971 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD----NR---ELASGG-N--DNRLFVWNQH-STQPVLKY 329 (474)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----~~---~lasg~-~--Dg~v~iwd~~-~~~~~~~~ 329 (474)
..++.....+-+.+||+ .++ .+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++. ....+..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~-~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGK-MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSC-EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCc-EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 56677777889999999 444 3555543 56777776663 22 223333 3 5789999773 22234444
Q ss_pred cc------CC-CcEEEEEE--CCCCC--cEEEEecCCCCCeEEEEECC-------CCceeeeecCCCCeEEEEEcCCCCe
Q 011971 330 CE------HT-AAVKAIAW--SPHLH--GLLASGGGTADRCIRFWNTT-------TNTHLSCMDTGSQVCNLVWSKNVNE 391 (474)
Q Consensus 330 ~~------h~-~~V~~l~~--sp~~~--~ll~sg~Gt~d~~I~iwd~~-------~~~~~~~~~~~~~v~~l~~s~~~~~ 391 (474)
.. .. ..+..+|+ +|... +++++. .++.+..|++. +.+.++.+..++++..+...+....
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 21 11 45677888 77544 344443 67999998882 3466788889999999999999999
Q ss_pred EEEEEecCCCeEEEEECC-----CCceeEEEc-CC-CccEEEEEE--CCCCC-EEEEEe-CCCcEEEEeCC
Q 011971 392 LVSTHGYSQNQIIVWRYP-----TMSKLATLT-GH-TFRVLYLAI--SPDGQ-TIVTGA-GDETLRFWNVF 451 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~-----~~~~~~~l~-~h-~~~V~~l~~--spdg~-~l~t~s-~Dg~I~iW~l~ 451 (474)
|++ +.++..|..++.. +++.+..+. ++ ...+..|++ .++|+ +|++++ .+.++.+|+..
T Consensus 194 Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999 7677666555643 344555542 22 236888887 55666 566555 67899999996
No 298
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.93 E-value=0.01 Score=57.65 Aligned_cols=226 Identities=9% Similarity=0.093 Sum_probs=129.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-EEEEec---CCCCcEEEEEecCC-----EEEEEeC----C----C
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTME---GHRLRVGALAWSSS-----LLSSGSR----D----K 270 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-~~~~~~---~h~~~V~~l~~~~~-----~l~sgs~----d----g 270 (474)
-.....|+|.|+|+ |+++..+|.|.+++ .+++ .+..+. ........|+++++ .|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 35678999999997 55566679999997 3454 222221 22356889999864 5555443 2 5
Q ss_pred cEEEEECcCCc------ce-Eeeec-CcCCCEEEEEEecCCCEEEEEeC-------------CCcEEEEECCCC------
Q 011971 271 SILQRDIRAQE------DF-VSKLS-GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST------ 323 (474)
Q Consensus 271 ~I~iwd~~~~~------~~-~~~~~-~h~~~V~~l~~spd~~~lasg~~-------------Dg~v~iwd~~~~------ 323 (474)
.|..++..... +. +..+. ........|.|.|||.++++-+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67777765431 11 11121 11123467999999987776442 245666665432
Q ss_pred ---cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC--eEEEEECCC--------C--------ceeeee-cCCCCeE
Q 011971 324 ---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTT--------N--------THLSCM-DTGSQVC 381 (474)
Q Consensus 324 ---~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd~~~--------~--------~~~~~~-~~~~~v~ 381 (474)
..+.. .++. ....++|+|+...|+++-.| .++ .|.+..... + ..+..+ .......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 11222 2333 34689999954457776543 222 233332110 0 122233 2345678
Q ss_pred EEEEc-------CCCCeEEEEEecCCCeEEEEECCCC-cee--EEE-cCCCccEEEEEECCCCCEEEEEe
Q 011971 382 NLVWS-------KNVNELVSTHGYSQNQIIVWRYPTM-SKL--ATL-TGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 382 ~l~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~l~~spdg~~l~t~s 440 (474)
.+.|. .++..+++ ....+.|...++... +.. ..+ .+-..++..+++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 88884 45655555 567788988888753 222 233 23346799999999997666654
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.93 E-value=0.014 Score=61.28 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=147.4
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEE
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGL 297 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 297 (474)
+|+.+ ....|+..++++......+. ..-..+..|+|+. + ++++-..++.|..+++.... ....+........+|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceE
Confidence 45554 45679999988655433332 2234678889873 3 45555677889999887644 222222223457789
Q ss_pred EEecCCCEE-EEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011971 298 KWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (474)
Q Consensus 298 ~~spd~~~l-asg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~ 376 (474)
++.+.+..| ++-...+.|.+.++........+...-.....|+++|....|+.+--| ..+.|...++........+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEEECC
Confidence 998765544 555567889999987554333333444567899999977778887532 356888888876554444445
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
......|+++++++.|+.+ -...+.|..+++..... ..+.........|++.. +...++-...+.|...|..++..
T Consensus 165 ~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp CSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 5678999999998888886 44678999999865433 23333334456778754 33344444577888888766543
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.84 E-value=0.0075 Score=63.32 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=133.0
Q ss_pred CCCcEEEecCCCCe-EEEEecCCCCcEEEEEec--CCEEE-EEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC
Q 011971 228 SHGKVQIWDASRCK-RVRTMEGHRLRVGALAWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (474)
Q Consensus 228 ~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~ 303 (474)
....|+..++.... ....+...-..+..|+|+ .+.|+ +-...+.|..+++.........+...-....+|++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887653 222233334457788887 34444 444567888888875532122333333568999999955
Q ss_pred C-EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeE
Q 011971 304 R-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVC 381 (474)
Q Consensus 304 ~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~ 381 (474)
+ ++++-...+.|.+.++........+...-.....|+++|.+..|+.+.-| ..+.|...++........+. ......
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 5 44555567899999997654333333444567899999987778887633 34678777776443333332 345688
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG-AGDETLRFWNVFPSPK 455 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~-s~Dg~I~iW~l~~~~~ 455 (474)
.|+++++++.|+.+ -...+.|..+++........+.+.......|++..+ .|+.+ ...+.|...|..++..
T Consensus 175 Glald~~~~~LY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 175 GLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEEETTTTEEEEE-ETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEEccCCEEEEE-eCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 99999988888876 445678999998654333222212222346677655 45444 4567888888876654
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.065 Score=60.25 Aligned_cols=275 Identities=8% Similarity=0.062 Sum_probs=156.4
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEecCCCCeE
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR------NTHLAVGTS-HGKVQIWDASRCKR 242 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~------g~~la~gs~-dg~I~iwd~~~~~~ 242 (474)
+...+-+... ++++.++.+.++.+..++............|.|+++.+. ++++|+|.. |++|+|+++.+.+.
T Consensus 516 I~~As~n~~~-vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 516 ISVASCNSSQ-VVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp CCEEEECSSE-EEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEeCCCE-EEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence 4444444433 333357788888877665544433344678999999863 469999997 99999999987766
Q ss_pred EEEecC-CCCcEEEEEe---c-CCEEEEEeCCCcEEEEECcC--Ccce--EeeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 243 VRTMEG-HRLRVGALAW---S-SSLLSSGSRDKSILQRDIRA--QEDF--VSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 243 ~~~~~~-h~~~V~~l~~---~-~~~l~sgs~dg~I~iwd~~~--~~~~--~~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
+....- ......++.. . ..+|..|-.||.+..+.+.. +.-. .....+ ..++.=..+...+..-+.+..+.
T Consensus 595 ~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~r 673 (1158)
T 3ei3_A 595 LHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDR 673 (1158)
T ss_dssp EEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSS
T ss_pred EEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCC
Confidence 544321 1223344443 2 35789999999987666543 2211 112223 34554444444444433334445
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEECCCC--CcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeEEEEEcCCC
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNV 389 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~--~~ll~sg~Gt~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~ 389 (474)
...++--+ ++....--.-...-....|+... ..++++ .++.++|..+... -.++.+..+..+..++++|..
T Consensus 674 p~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~ 748 (1158)
T 3ei3_A 674 PTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVS 748 (1158)
T ss_dssp CEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGG
T ss_pred CEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCC
Confidence 55555433 33222211111122344454321 235544 3566888877543 345566678889999999988
Q ss_pred CeEEEEEecC-----------------------------------------------CCeEEEEECCCCceeEEEcC-CC
Q 011971 390 NELVSTHGYS-----------------------------------------------QNQIIVWRYPTMSKLATLTG-HT 421 (474)
Q Consensus 390 ~~l~~~~g~~-----------------------------------------------dg~I~iwd~~~~~~~~~l~~-h~ 421 (474)
+.+++..... .+.|++.|-.+++.+..+.- ..
T Consensus 749 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n 828 (1158)
T 3ei3_A 749 QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN 828 (1158)
T ss_dssp TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT
T ss_pred CEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC
Confidence 8766543211 12467777777777665542 23
Q ss_pred ccEEEEE---ECCC-CCEEEEEe----------CCCcEEEEeCC
Q 011971 422 FRVLYLA---ISPD-GQTIVTGA----------GDETLRFWNVF 451 (474)
Q Consensus 422 ~~V~~l~---~spd-g~~l~t~s----------~Dg~I~iW~l~ 451 (474)
..+.+++ |..+ ..+|+.|+ ..|.|+++++.
T Consensus 829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 3455554 3322 46888776 34779999986
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.0095 Score=56.43 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=136.7
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCC-CCEEEEEecCC---CCCEEEEEEcCCCCEEEEEeC-------CCcEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACS-SKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS-------HGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~-~~~~~~~~~~~---~~~V~~v~~sp~g~~la~gs~-------dg~I~iwd~~ 238 (474)
|....|-..+.|+.-.+..||-|++.. ....++++... ...|.....+++.++++..+- .|.+++|..+
T Consensus 109 VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 109 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp EEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 778889999999999999999999974 45666665311 457888888899998776442 4789999988
Q ss_pred CCeEEEEecCCCCcEEEEEecC-----CEEEEEeC---CCcEEEEECcCC--cc------eEeeec---CcCCCEEEEEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS-----SLLSSGSR---DKSILQRDIRAQ--ED------FVSKLS---GHKSEVCGLKW 299 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~---dg~I~iwd~~~~--~~------~~~~~~---~h~~~V~~l~~ 299 (474)
.. .-+.+++|.+....+...+ .+|+.+.+ .+.+.+.++... .. .+..+. .-.+-..++..
T Consensus 189 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 189 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred cc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 54 4567888888777666653 24444443 268888888543 11 111111 12455677888
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
++....+..-+.-|.|++||++++.++..-+-....|..-+-+.....+++.. ..|.|.-..+....
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vn---r~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEEN 334 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEE---TTCEEEEEEECTTT
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEc---CCCEEEEEEECccc
Confidence 88888899999999999999999999887766666666666555555566654 46666655555443
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.70 E-value=0.019 Score=56.45 Aligned_cols=197 Identities=13% Similarity=0.147 Sum_probs=139.5
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCC-CCEEEEEecCC---CCCEEEEEEcCCCCEEEEEeC-------CCcEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACS-SKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS-------HGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~-~~~~~~~~~~~---~~~V~~v~~sp~g~~la~gs~-------dg~I~iwd~~ 238 (474)
|....|-..+.|+.-.+..||-|++.. ....++++... ...|.....+++.++++..+- .|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp CCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred ceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 667788888899999999999999974 35666665311 457888888999998775432 4789999987
Q ss_pred CCeEEEEecCCCCcEEEEEecC-----CEEEEEeCC---CcEEEEECcCC--c------ceEeee---cCcCCCEEEEEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRD---KSILQRDIRAQ--E------DFVSKL---SGHKSEVCGLKW 299 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~--~------~~~~~~---~~h~~~V~~l~~ 299 (474)
. +.-..++||.+....+...+ .+++.+.+. +.+.+.++... . ..+..+ ..-.+-..++..
T Consensus 188 r-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 R-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp T-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred c-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 5 44567889988887777763 355555553 78999998654 1 011111 122455678888
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011971 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~ 370 (474)
++....+..-+.-|.|++||+.++.++..-+-....|..-+.......++... ..|.|.-..+.....
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn---r~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTCEEEEEEECTTTH
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc---cCceEEEEEEccccc
Confidence 99888999999999999999999999887766666776666666655666665 566666555554443
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.70 E-value=0.0059 Score=58.20 Aligned_cols=155 Identities=10% Similarity=0.110 Sum_probs=108.1
Q ss_pred CcceeeeeCCC--CcEEEEE-cCCeEEEEeCCCCCEEEEEecCC-----C--CCEEEEEE---cCCCCEEEEEe------
Q 011971 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGI-----D--DSVCSVGW---ANRNTHLAVGT------ 227 (474)
Q Consensus 167 d~~v~~l~~s~--~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~-----~--~~V~~v~~---sp~g~~la~gs------ 227 (474)
..|..+++|.+ +.++.+. ..+.|..|+...+....+ .+.. . ..+..|.| .+++.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 45788999987 5555555 379999999987766655 3432 1 14689999 68877777543
Q ss_pred -------CCCcEEEecCC---CCeEEEEec--C-----------CCCcEEEEEec--CCEEEEEeCC-CcEEEEECcCCc
Q 011971 228 -------SHGKVQIWDAS---RCKRVRTME--G-----------HRLRVGALAWS--SSLLSSGSRD-KSILQRDIRAQE 281 (474)
Q Consensus 228 -------~dg~I~iwd~~---~~~~~~~~~--~-----------h~~~V~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~ 281 (474)
.+..|..||+. +++.+.... . -......++.. ++..++++.. +.|...+.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 15679999998 777655443 1 11247788886 5788888888 888877776442
Q ss_pred ceEeee-----cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 282 DFVSKL-----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 282 ~~~~~~-----~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
..... .......++|+++|+++.|++....|.|..+|+...
T Consensus 171 -~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 -VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp -EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred -EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11111 112234679999999999998877999999998843
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.70 E-value=0.027 Score=54.56 Aligned_cols=235 Identities=10% Similarity=0.102 Sum_probs=129.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-------CCCCcEEEEEecC-----CEEEEEe-C-------
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-------GHRLRVGALAWSS-----SLLSSGS-R------- 268 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~~~-----~~l~sgs-~------- 268 (474)
.....|+|.|+|++|+++...|.|.+++.. ++....+. ........|++++ ..|+... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999845566678999999853 33221111 1234568899985 3444332 2
Q ss_pred CCcEEEEECcCCc------ce-Eeeec---CcCCCEEEEEEecCCCEEEEEeC-------------CCcEEEEECCCC--
Q 011971 269 DKSILQRDIRAQE------DF-VSKLS---GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST-- 323 (474)
Q Consensus 269 dg~I~iwd~~~~~------~~-~~~~~---~h~~~V~~l~~spd~~~lasg~~-------------Dg~v~iwd~~~~-- 323 (474)
...|..+++.... +. +..+. ........|.|.|||.++++-+. .|.|.-+|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666654321 11 11111 11122467999999966666443 246777776532
Q ss_pred ------------cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 011971 324 ------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---------------------- 369 (474)
Q Consensus 324 ------------~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~---------------------- 369 (474)
..+... ++. ....++|+|....|+++-.| .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~-G~r-np~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY-GIR-NPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE-CCS-EEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEEEE-cCc-CccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 112221 333 46789999954457766432 22211222221111
Q ss_pred ---------eeeeecCCCCeEEEEEcC-------CCCeEEEEEecCCCeEEEEECCCCceeEE--E-cCCCccEEEEEEC
Q 011971 370 ---------HLSCMDTGSQVCNLVWSK-------NVNELVSTHGYSQNQIIVWRYPTMSKLAT--L-TGHTFRVLYLAIS 430 (474)
Q Consensus 370 ---------~~~~~~~~~~v~~l~~s~-------~~~~l~~~~g~~dg~I~iwd~~~~~~~~~--l-~~h~~~V~~l~~s 430 (474)
.+..+.....+..+.|.. ++..+++ ....+.|...++..++.+.. + .....++..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 112223344577788864 4555555 56778888888776543322 2 2234589999999
Q ss_pred CCCCEEEEEe-CCCcEEEEeCC
Q 011971 431 PDGQTIVTGA-GDETLRFWNVF 451 (474)
Q Consensus 431 pdg~~l~t~s-~Dg~I~iW~l~ 451 (474)
|||.+.++.. .+| +||.+.
T Consensus 332 pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 332 PDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TTSCEEEEECSTTE--EEEEEE
T ss_pred CCCcEEEEEeCCCC--EEEEEe
Confidence 9998666433 344 556553
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.55 E-value=0.0044 Score=58.34 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=113.7
Q ss_pred CCCEEEEEe-CC-----CcEEEecCCCCeEEEE--ecCCCCcEEEEEecCCEEEEEeCC-----CcEEEEECcCCc---c
Q 011971 219 RNTHLAVGT-SH-----GKVQIWDASRCKRVRT--MEGHRLRVGALAWSSSLLSSGSRD-----KSILQRDIRAQE---D 282 (474)
Q Consensus 219 ~g~~la~gs-~d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~---~ 282 (474)
++.+++.|+ .+ ..+.+||..+.+-... +.........+..++.+++.|+.+ ..+.+||+.+.. -
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 345566665 32 3688999887764332 121122233344556777777765 468899987754 1
Q ss_pred -eEeeecCcCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcceE--EEccCCCcEEEEEECCCCCcEEEEecC
Q 011971 283 -FVSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 283 -~~~~~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
.+..+.........+.+ ++..++.|+.+ +.+.+||..+.+-.. .+........++.+ +..+++.||.
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~ 168 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGY 168 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCB
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCC
Confidence 12112111122222222 67777777754 368899988765322 22111122222333 3457777652
Q ss_pred CC---CCeEEEEECCCCceeee--ecCCC-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceeEE--EcCCCc
Q 011971 355 TA---DRCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSKLAT--LTGHTF 422 (474)
Q Consensus 355 t~---d~~I~iwd~~~~~~~~~--~~~~~-~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~--l~~h~~ 422 (474)
.. -..+.+||+.+.+-... +.... ....+.+ + ..|++..|.. .+.+.+||..+.+-... +.....
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 11 24588999887643322 11111 1122222 3 3454443332 35789999876543322 211111
Q ss_pred cEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 011971 423 RVLYLAISPDGQTIVTGAGD-----ETLRFWNVFPSP 454 (474)
Q Consensus 423 ~V~~l~~spdg~~l~t~s~D-----g~I~iW~l~~~~ 454 (474)
....+.+ +++.++.|+.+ ..|.+||+....
T Consensus 246 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 246 YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1222233 66777777655 346777776543
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.55 E-value=0.0003 Score=75.18 Aligned_cols=222 Identities=12% Similarity=0.001 Sum_probs=129.3
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEE-eCCCcEEEEECcCC---cceEeeecCcCCCEEEEEEecC
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSG-SRDKSILQRDIRAQ---EDFVSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sg-s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spd 302 (474)
.+.|++.++...+....+.. ...+..|+|++ +.|+.. ...+.|..+++... ......+........+|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888877655444332 23456778863 444444 45678999988751 1112222222234567888754
Q ss_pred -CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCe
Q 011971 303 -NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQV 380 (474)
Q Consensus 303 -~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v 380 (474)
++++++-...+.|.++++........+.........|+++|.+..|+++..+ ..+.|..+++........+. .-...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 4455555567889999987554333333333456789999987777776532 23678888775432222221 23456
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc--CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT--GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..|+|++++..|+.+ -...+.|.++++........+. ........|++..+ .++++....+.|..++..++.
T Consensus 543 nGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 789999988888775 4467889999986433222222 11223345566443 344455566788888876543
No 308
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.51 E-value=0.0095 Score=66.83 Aligned_cols=275 Identities=9% Similarity=0.032 Sum_probs=165.3
Q ss_pred eeeeeCCCCcEEEEEc----CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 170 LNLVDWSSHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 170 v~~l~~s~~~~la~~~----d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
...+.+.++.++++-. +..|.|-|+.++..+....+... +.-.+|..+.||.=. ..+++|+|+++...+..
T Consensus 27 f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks 101 (1630)
T 1xi4_A 27 FSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA 101 (1630)
T ss_pred ccceeeecCceEEEEecCCCCceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcc
Confidence 3344444555555532 34788888887664433222222 234577777777665 67899999998887777
Q ss_pred ecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCc----CCCEEEEEEecCCCEEEEEe-------CCC
Q 011971 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH----KSEVCGLKWSYDNRELASGG-------NDN 313 (474)
Q Consensus 246 ~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~spd~~~lasg~-------~Dg 313 (474)
+.- ...|.--.|- ++.|+..+ +..|..|++.....++..+..| ...|..-..+++.++++..| -.|
T Consensus 102 ~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 102 HTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred ccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 664 3456666774 56665555 4579999997655555555544 45677778888999887544 357
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEEC--CCCCcEEEEecC-CCCCeEEEEECCCC---cee---ee--e--c---CC
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWS--PHLHGLLASGGG-TADRCIRFWNTTTN---THL---SC--M--D---TG 377 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~ll~sg~G-t~d~~I~iwd~~~~---~~~---~~--~--~---~~ 377 (474)
.+.+|..+.+. .+.+.+|.+....+... +....+++.+.. ...+.+++-++... ... .. + . ..
T Consensus 180 ~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~ 258 (1630)
T 1xi4_A 180 AMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 258 (1630)
T ss_pred eeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccccc
Confidence 88888876543 33455666555444442 222334444321 12367888887542 110 00 0 0 11
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.-...+..++....++.. +.-|.|.+||+.++.++..-+-....|...+-.....-++.....|.|.--.+....
T Consensus 259 Dfpv~~~vs~k~g~iy~i--tk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 259 DFPVAMQISEKHDVVFLI--TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred CcceEEEeccccCEEEEE--ecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 224566777766666663 478999999999998876655555555555544433334444566766666655543
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.48 E-value=0.013 Score=55.95 Aligned_cols=161 Identities=10% Similarity=0.075 Sum_probs=106.4
Q ss_pred cCcCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCcceEEEccC-------CCcEEEEEE---CCCCCcEEEEec-C-
Q 011971 288 SGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVLKYCEH-------TAAVKAIAW---SPHLHGLLASGG-G- 354 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~~~~~~~~~~h-------~~~V~~l~~---sp~~~~ll~sg~-G- 354 (474)
........++.|++....|..++ ..++|..||...+......... ...+..|.| .|++. |+++.. |
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccc
Confidence 33444456788988666666666 7899999999755433222121 114689999 68854 555321 0
Q ss_pred ---------CCCCeEEEEECC---CCceeeeecCC--------------CCeEEEEEcCCCCeEEEEEecCC-CeEEEEE
Q 011971 355 ---------TADRCIRFWNTT---TNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQ-NQIIVWR 407 (474)
Q Consensus 355 ---------t~d~~I~iwd~~---~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd 407 (474)
+-+..|..||+. +++.+...... .....++..++|+..++ +... +.|...+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt--~s~~~~~I~rV~ 165 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA--FALGMPAIARVS 165 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE--EEESSCEEEEEC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe--CCCCCCeEEEEe
Confidence 016779999999 88877655421 24788999999999887 5455 6666655
Q ss_pred CCCCceeEEEc------CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 408 YPTMSKLATLT------GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 408 ~~~~~~~~~l~------~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
... +.+..+. ......+.|+++|||..|++...+|.|..+|+..
T Consensus 166 pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 ADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 433 2333221 1122366899999999998887799999999873
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.41 E-value=0.017 Score=54.46 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=116.5
Q ss_pred cEEEEEc---CCeEEEEeCCCCCEEEEEecCCC-CCEEEEEEcCCCCEEEEEeCC----CcEEEecCCCCeEEEE--ecC
Q 011971 179 NVLAVGL---GNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSH----GKVQIWDASRCKRVRT--MEG 248 (474)
Q Consensus 179 ~~la~~~---d~~V~lwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~gs~d----g~I~iwd~~~~~~~~~--~~~ 248 (474)
.+++.|. .+.+.+||..+++...+-.+... ....++. -++.+++.|+.+ ..+.+||..+.+-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3444443 35899999999887766544221 1222222 256677777754 5688999988764433 222
Q ss_pred CCCcEEEEEecCCEEEEEeCC------CcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeC---------C
Q 011971 249 HRLRVGALAWSSSLLSSGSRD------KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGN---------D 312 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~---------D 312 (474)
.......+...+.+++.|+.+ ..+.+||+.+..- .+..+.........+. -+++.++.|+. -
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccccc
Confidence 222233344566777777765 4588999877541 1111111111122222 26677777764 3
Q ss_pred CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCC-CCeEEEE
Q 011971 313 NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSC--MDTG-SQVCNLV 384 (474)
Q Consensus 313 g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---d~~I~iwd~~~~~~~~~--~~~~-~~v~~l~ 384 (474)
+.+.+||..+.+-... +........++.+ +..|++.||... -..+.+||+.+.+-... +... .....+.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 4588999987643222 1111111222333 345777775211 14588999887643221 1111 1122222
Q ss_pred EcCCCCeEEEEEec----CCCeEEEEECCCC
Q 011971 385 WSKNVNELVSTHGY----SQNQIIVWRYPTM 411 (474)
Q Consensus 385 ~s~~~~~l~~~~g~----~dg~I~iwd~~~~ 411 (474)
+ ++ .|++..|. ..+.+.+||..+.
T Consensus 246 ~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 246 V--GS-IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp E--TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred E--CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2 34 44444343 2357888888764
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.39 E-value=0.009 Score=56.17 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=111.9
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEecCCCCe---EEE--EecCCCCcEEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCK---RVR--TMEGHRLRVGAL 256 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-----g~I~iwd~~~~~---~~~--~~~~h~~~V~~l 256 (474)
..+++||..+++...+-.+.....-.++. .-++.+++.|+.+ ..+.+||..+.+ -.. .+.........+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 47899999988876654433221111222 2256677777754 368999987765 322 222222223334
Q ss_pred EecCCEEEEEeCC-----CcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcc
Q 011971 257 AWSSSLLSSGSRD-----KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQP 325 (474)
Q Consensus 257 ~~~~~~l~sgs~d-----g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~~~~~~ 325 (474)
..++.+++.|+.+ ..+.+||+.+..- .+..+.........+. -+++.++.|+.+ +.+.+||+.+.+-
T Consensus 110 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 110 TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 4566677777654 3588889876541 1111211111122222 267778887754 4689999887643
Q ss_pred eEE--EccCCCcEEEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCC-CeEEEEEcCCCCeEEEEEe
Q 011971 326 VLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 326 ~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---d~~I~iwd~~~~~~~~~--~~~~~-~v~~l~~s~~~~~l~~~~g 397 (474)
... +........++.+ +..+++.||... ...+.+||+.+.+-... +.... ....+.+ +++ |++. |
T Consensus 188 ~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~-G 260 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR-LYAI-A 260 (301)
T ss_dssp EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEE-C
T ss_pred EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE-EEEE-c
Confidence 322 1111112223333 345777775211 24689999987653322 11111 1122222 444 4444 4
Q ss_pred cCC-----CeEEEEECCCCc
Q 011971 398 YSQ-----NQIIVWRYPTMS 412 (474)
Q Consensus 398 ~~d-----g~I~iwd~~~~~ 412 (474)
+.+ +.+.+||..+.+
T Consensus 261 G~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBEEEEEEEETTTTE
T ss_pred CcCCCcccccEEEEcCCCCe
Confidence 333 467788876543
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.32 E-value=0.014 Score=54.93 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=110.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEecCCCCeEEEE--ecCCCCcEEEEEec
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRT--MEGHRLRVGALAWS 259 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg-----~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~ 259 (474)
..+.+||..+.+...+-.+.....-.+++.. ++.+++.|+.++ .+.+||..+.+-... +.........+.++
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence 4689999998877666443222111122222 566777777543 588999887764333 22222223344456
Q ss_pred CCEEEEEeCCC-----cEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcce
Q 011971 260 SSLLSSGSRDK-----SILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGND-------NRLFVWNQHSTQPV 326 (474)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~D-------g~v~iwd~~~~~~~ 326 (474)
+.+++.|+.++ .+.+||+.+..- .+..+.........+. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 77778887654 477888876541 1111111111122222 266777777643 45889998876433
Q ss_pred EE--EccCCCcEEEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCCCeEEEEEcCCCCeEEEEEecC
Q 011971 327 LK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 327 ~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
.. +........++.+ +..|++.||... ...+.+||+.+.+-... +.....-..++.. ++ .|++. |+.
T Consensus 187 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~i~v~-GG~ 260 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NG-LLYVV-GGD 260 (302)
T ss_dssp EECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEE-CCB
T ss_pred ECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CC-EEEEE-CCc
Confidence 22 1111112222333 345777775211 24688999987643222 1111111112211 34 34444 433
Q ss_pred C-----CeEEEEECCCCc
Q 011971 400 Q-----NQIIVWRYPTMS 412 (474)
Q Consensus 400 d-----g~I~iwd~~~~~ 412 (474)
+ ..+.+||..+.+
T Consensus 261 ~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CSSSBCCCEEEEETTTTE
T ss_pred CCCcccccEEEEcCCCCe
Confidence 3 357888877653
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.011 Score=59.98 Aligned_cols=158 Identities=11% Similarity=0.053 Sum_probs=100.4
Q ss_pred CCEEEEEEecC-CC-EEEEEeCCCcEEEEECCCCcceEEEccC---CCcEEEEEE-------CCCCCcEEEEecCCCC--
Q 011971 292 SEVCGLKWSYD-NR-ELASGGNDNRLFVWNQHSTQPVLKYCEH---TAAVKAIAW-------SPHLHGLLASGGGTAD-- 357 (474)
Q Consensus 292 ~~V~~l~~spd-~~-~lasg~~Dg~v~iwd~~~~~~~~~~~~h---~~~V~~l~~-------sp~~~~ll~sg~Gt~d-- 357 (474)
.....|+|+|. +. ++++-...+.|++.|+..+.....+... ......|+| ++++..|+++.. .+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~--~~~~ 216 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID--YDGK 216 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC--CCTT
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC--CCCC
Confidence 35789999983 44 4444444577999999877655444321 235889999 999987887754 22
Q ss_pred ----CeEEEEECCC-Ccee-----eeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-------CCce-------
Q 011971 358 ----RCIRFWNTTT-NTHL-----SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP-------TMSK------- 413 (474)
Q Consensus 358 ----~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-------~~~~------- 413 (474)
..|.+++... +... ..+........++.+|++..|+++ ....+.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-ETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-ECCCCEEEEEecccccccccCceeecccccc
Confidence 2366776443 2221 223233455678889977776665 5678899999987 4443
Q ss_pred ----eEEE-c-CCCccEEEEEECCCCCEEEEE-eCCCcEEEEeCCC
Q 011971 414 ----LATL-T-GHTFRVLYLAISPDGQTIVTG-AGDETLRFWNVFP 452 (474)
Q Consensus 414 ----~~~l-~-~h~~~V~~l~~spdg~~l~t~-s~Dg~I~iW~l~~ 452 (474)
...+ . +.......|+|+|+|++|+.+ +....|+.++...
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 1121 1 223446799999999965554 4566788766543
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.29 E-value=0.013 Score=55.32 Aligned_cols=225 Identities=9% Similarity=0.074 Sum_probs=114.4
Q ss_pred CEEEEEeC--CCcEEEecCCCCeEEEE--ecCCCCcEEEEEecCCEEEEEeCC----CcEEEEECcCCcc-eEeeecCcC
Q 011971 221 THLAVGTS--HGKVQIWDASRCKRVRT--MEGHRLRVGALAWSSSLLSSGSRD----KSILQRDIRAQED-FVSKLSGHK 291 (474)
Q Consensus 221 ~~la~gs~--dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~-~~~~~~~h~ 291 (474)
.+++.|+. ...+.+||..+.+-... +......-..+...+.+++.|+.+ ..+.+||+.+..- .+..+....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 35556654 35689999888764432 222222233344566777777755 5688899877541 111111111
Q ss_pred CCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCC-------
Q 011971 292 SEVCGLKWSYDNRELASGGND------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA------- 356 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~D------g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~------- 356 (474)
.....+.+ ++..++.|+.+ ..+.+||..+.+-... +........++.+ +..+++.||...
T Consensus 93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEE
T ss_pred cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccc
Confidence 22222222 67778888765 4689999887653222 1111111222222 335777765211
Q ss_pred CCeEEEEECCCCceeee--ecCCCCeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCce--eEEEcCCCccEEEEE
Q 011971 357 DRCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSK--LATLTGHTFRVLYLA 428 (474)
Q Consensus 357 d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~ 428 (474)
-..+.+||+.+.+-... +.....-..+... ++ .|++..|.. -..+.+||..+.+- +..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 34588999987643222 1111111122222 34 444443332 24688999876532 222221122222333
Q ss_pred ECCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 011971 429 ISPDGQTIVTGAGD-----ETLRFWNVFPSP 454 (474)
Q Consensus 429 ~spdg~~l~t~s~D-----g~I~iW~l~~~~ 454 (474)
+ ++.+++.|+.+ ..+.+||+....
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 3 67777777754 457788877653
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.25 E-value=0.16 Score=49.10 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=117.8
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEec----CCCCCEEEEEEcCC---CCEEEEEeC-C-----CcEEEe
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR---NTHLAVGTS-H-----GKVQIW 235 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~----~~~~~V~~v~~sp~---g~~la~gs~-d-----g~I~iw 235 (474)
...++|.+ +.++++...+.|++++ +++...+..+ ........|+|+|+ +..|+++.. . +.|..|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 56788888 6777777789999998 4544333222 12457899999998 555655543 2 578888
Q ss_pred cCCCCe-----E-EEEec---CCCCcEEEEEecC--CEEEEEeC-------------CCcEEEEECcCC-----------
Q 011971 236 DASRCK-----R-VRTME---GHRLRVGALAWSS--SLLSSGSR-------------DKSILQRDIRAQ----------- 280 (474)
Q Consensus 236 d~~~~~-----~-~~~~~---~h~~~V~~l~~~~--~~l~sgs~-------------dg~I~iwd~~~~----------- 280 (474)
+..... . +..+. +.......|+|.+ .++++.+. .|.|.-++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 876431 1 22233 1112235788864 44444322 245666665431
Q ss_pred -cceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCc--------EEEEECCC----------------CcceEEEccCCC
Q 011971 281 -EDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNR--------LFVWNQHS----------------TQPVLKYCEHTA 334 (474)
Q Consensus 281 -~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~--------v~iwd~~~----------------~~~~~~~~~h~~ 334 (474)
........+| ....+++|+| ++.++++-...+. |.+...-. ..++..+ .+..
T Consensus 191 ~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGF 268 (352)
T ss_dssp TSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCC
T ss_pred CCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCC
Confidence 0000111223 2357889999 5665554333222 33332111 1233344 2233
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------eeeeecCCCCeEEEEEcCCCCeEEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-------HLSCMDTGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-------~~~~~~~~~~v~~l~~s~~~~~l~~~ 395 (474)
....++| .++ .++++.- ..+.|...++.... ....+.....+..+++.|+|..+++.
T Consensus 269 ap~G~~~-~~G-~l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRG-DLYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETT-EEEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECC-EEEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 4567777 344 3555543 56778777765432 11222334678999999999766663
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.25 E-value=0.025 Score=54.81 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCCcEEEecCCC--CeEE-EEecC-----CCCcEEEEEec----CC--EEEEEeC--CCcEEEEECcCCcc---eEeeec
Q 011971 228 SHGKVQIWDASR--CKRV-RTMEG-----HRLRVGALAWS----SS--LLSSGSR--DKSILQRDIRAQED---FVSKLS 288 (474)
Q Consensus 228 ~dg~I~iwd~~~--~~~~-~~~~~-----h~~~V~~l~~~----~~--~l~sgs~--dg~I~iwd~~~~~~---~~~~~~ 288 (474)
.+|.|.++|..+ .+.. -.+.+ .......+.+. +. ++++-.. +..|.+|++..... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688999999873 2211 11222 22456666652 22 3344333 46777877765432 223333
Q ss_pred Cc-CCCEEEEEEecCCCEEEEEe-----------------CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEE
Q 011971 289 GH-KSEVCGLKWSYDNRELASGG-----------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (474)
Q Consensus 289 ~h-~~~V~~l~~spd~~~lasg~-----------------~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~ 350 (474)
+. -...+.+.+.++|.++++.. ..|.|+.+|. ++ +..+...-...+.++|+||++.+++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 24578999999998877754 1245666665 32 2333333456789999999998888
Q ss_pred EecCCCCCeEEEEECCC-Cce--eeeecCCCCeEEEEEcC-CCCeEEEE
Q 011971 351 SGGGTADRCIRFWNTTT-NTH--LSCMDTGSQVCNLVWSK-NVNELVST 395 (474)
Q Consensus 351 sg~Gt~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~-~~~~l~~~ 395 (474)
+.. ..+.|..|++.. +.. ...+......-.+++.+ +|+..+++
T Consensus 238 adt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 238 AEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence 865 578899999863 332 22344456678899999 58877764
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.21 E-value=0.021 Score=53.65 Aligned_cols=225 Identities=18% Similarity=0.161 Sum_probs=111.1
Q ss_pred CCEEEEEeCC----CcEEEecCCCCeEEEE--ecCCCCcEEEEEecCCEEEEEeCC-----CcEEEEECcCCcc-eEeee
Q 011971 220 NTHLAVGTSH----GKVQIWDASRCKRVRT--MEGHRLRVGALAWSSSLLSSGSRD-----KSILQRDIRAQED-FVSKL 287 (474)
Q Consensus 220 g~~la~gs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~-~~~~~ 287 (474)
+.+++.|+.+ ..+.+||..+.+-... +......-..+...+.+++.|+.+ ..+.+||..+..- .+..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 3445555543 3578888887764332 111111222334456677777755 3588899876541 11111
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCC----
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---- 356 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~Dg-----~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---- 356 (474)
.........+. -++..++.|+.++ .+.+||+.+.+-... +........++.+ +..+++.||...
T Consensus 96 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 96 RDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp SSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTE
T ss_pred CccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCc
Confidence 11111222222 2677888887653 578899877643222 1111111222222 345777765211
Q ss_pred -CCeEEEEECCCCceeee--ecCCC-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceeE--EEcCCCccEEE
Q 011971 357 -DRCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSKLA--TLTGHTFRVLY 426 (474)
Q Consensus 357 -d~~I~iwd~~~~~~~~~--~~~~~-~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~--~l~~h~~~V~~ 426 (474)
-..+.+||+.+.+-... +.... ....+.+ ++ .|++..|.. .+.+.+||..+.+-.. .+......-..
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 24588999887643322 21111 1122222 33 444443332 2478899987654322 12111111112
Q ss_pred EEECCCCCEEEEEeCCC-----cEEEEeCCCCC
Q 011971 427 LAISPDGQTIVTGAGDE-----TLRFWNVFPSP 454 (474)
Q Consensus 427 l~~spdg~~l~t~s~Dg-----~I~iW~l~~~~ 454 (474)
+.+ ++++++.|+.++ .+.+||+....
T Consensus 248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 223 677777777553 48888887654
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.21 E-value=0.33 Score=51.95 Aligned_cols=266 Identities=12% Similarity=0.071 Sum_probs=151.3
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME- 247 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~- 247 (474)
++.++.-..+..|-++.++.+++||..+.+..... ......|.++.. .+| .|.+|+.+ -|..||..+++......
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~-~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE-TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECCCS-CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc-cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 46665555544455555677999999877543311 112345777764 344 57778776 57888887665433211
Q ss_pred ---CCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecC----cCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 248 ---GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSG----HKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 248 ---~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
.....|.++... ...|..|+.+| |..+|............. ....|.++....++..|..|.. +-|..+|
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence 123568888776 45666677654 777887654311111111 1234888888777776666664 4588899
Q ss_pred CCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeEEEEEcCCCCe
Q 011971 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKNVNE 391 (474)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~~~~ 391 (474)
..+++...........|.++....++...+.+ ++-|.+++..++....... ....|.++....+|..
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 292 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-----DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI 292 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-----TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE
T ss_pred CCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-----CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE
Confidence 87664322111123458888888877633332 3458888887665432211 1235888888888876
Q ss_pred EEEEEecCCCeEEEEECCCCceeEEEc-----CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLATLT-----GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+. ...| +.++............ .....|.++.-..+|.+.+ |+.+| |..++..
T Consensus 293 WiG---T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 293 WLG---TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp EEE---ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCT
T ss_pred EEE---eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccc
Confidence 654 2445 5444432211111111 1234688888888887555 44555 5555543
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.20 E-value=0.11 Score=50.21 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCcEEEEECcCCcceEe--eecC-----cCCCEEEEEEec--CCC--EEEEEeC--CCcEEEEECCCCcc----eEEEc
Q 011971 268 RDKSILQRDIRAQEDFVS--KLSG-----HKSEVCGLKWSY--DNR--ELASGGN--DNRLFVWNQHSTQP----VLKYC 330 (474)
Q Consensus 268 ~dg~I~iwd~~~~~~~~~--~~~~-----h~~~V~~l~~sp--d~~--~lasg~~--Dg~v~iwd~~~~~~----~~~~~ 330 (474)
.+|.|.++|..+...... .+.+ ..-...+|.+.+ ++. ++++-.. +.+|.+|++..... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874321111 2222 234678888876 354 3444333 46778877654322 22332
Q ss_pred c-CCCcEEEEEECCCCCcEEEEecC---------------CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 331 E-HTAAVKAIAWSPHLHGLLASGGG---------------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 331 ~-h~~~V~~l~~sp~~~~ll~sg~G---------------t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
+ .-...+.+++.++|. ++++... ...+.|..+|. ++.......-...+.++|+|+++.|++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 2 224578999999986 5555321 11245666665 333222333456788999999999988
Q ss_pred EEecCCCeEEEEECCC-Cce--eEEEcCCCccEEEEEECC-CCCEEEEEeCC
Q 011971 395 THGYSQNQIIVWRYPT-MSK--LATLTGHTFRVLYLAISP-DGQTIVTGAGD 442 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~sp-dg~~l~t~s~D 442 (474)
+ -+..+.|..|++.. +.. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 238 a-dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 A-ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E-EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred E-eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 6 45678999999863 322 2233 2245677889999 59877766544
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.08 E-value=0.027 Score=53.15 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=94.9
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC----C-----CcEEEecCCCCeEEEE--ecCCCCcEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----H-----GKVQIWDASRCKRVRT--MEGHRLRVGA 255 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~----d-----g~I~iwd~~~~~~~~~--~~~h~~~V~~ 255 (474)
..+.+||..+++...+-.+.....-.+++.. ++.+++.|+. + ..+.+||..+.+-... +.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 4789999998887766443222111122222 5667777765 2 3688999887754332 2222222334
Q ss_pred EEecCCEEEEEeCC-----CcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 011971 256 LAWSSSLLSSGSRD-----KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQ 324 (474)
Q Consensus 256 l~~~~~~l~sgs~d-----g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~~~~~ 324 (474)
+.+++.+++.|+.+ ..+.+||+.+..- .+..+......-..+.+ ++..++.|+.+ +.+.+||+.+.+
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 44566777777644 3588889876541 11111111112222222 67777887764 468999987764
Q ss_pred ceEE--EccCCCcEEEEEECCCCCcEEEEecCCC---CCeEEEEECCCCc
Q 011971 325 PVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (474)
Q Consensus 325 ~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---d~~I~iwd~~~~~ 369 (474)
-... +........++.+ +..|++.||... -..+.+||+.+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 3211 1111112223333 345777775211 2568999988764
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.07 E-value=0.45 Score=50.89 Aligned_cols=261 Identities=9% Similarity=0.093 Sum_probs=153.1
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.|+++.-....++=+|..+.+..||-..-+............|.++.-..+| .|.+|+.+| +..||..+.+.......
T Consensus 23 ~V~~I~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETD 100 (758)
T ss_dssp CEEEEEECTTSCEEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCC
T ss_pred eEEEEEECCCCCEEEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccC
Confidence 4788877775545555556688888532111100000124568898877765 677788776 78999887654321111
Q ss_pred CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeec-----CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
....|.++......|..|+.+ -|..+|..+.. ...+. .....|.++....++.+.+ |+.+ -|..+|..++
T Consensus 101 ~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~ 175 (758)
T 3ott_A 101 FPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNG 175 (758)
T ss_dssp CCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred CCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCC
Confidence 233577776666777778776 57888876544 22221 1234688888877776554 5554 4778887765
Q ss_pred cceEEEcc------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEE
Q 011971 324 QPVLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 324 ~~~~~~~~------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~ 396 (474)
+.. .+.. ....|.++....++..|.+.. ++-|..+|..+++...... ....|.++....++...+.
T Consensus 176 ~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt----~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-- 248 (758)
T 3ott_A 176 KFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT----EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-- 248 (758)
T ss_dssp EEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE----EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE--
T ss_pred ceE-EecCCCccccccceeEEEEEECCCCEEEEEE----CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE--
Confidence 432 2211 123488888887766444421 3458889987765432211 2334777887777776664
Q ss_pred ecCCCeEEEEECCCCceeEEEcC--------CCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 397 GYSQNQIIVWRYPTMSKLATLTG--------HTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
. ++-+.+++..+.+.. .+.. ....|.++....+|.+-+ |+..| |.+.
T Consensus 249 -T-~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 249 -T-DNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp -E-TTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred -e-CCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 2 345888887655432 2211 234588898888876544 44455 4444
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.06 E-value=0.069 Score=52.49 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCC---CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe------------
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK------------ 241 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~------------ 241 (474)
.+.-+.+..++.|+..++..+...+.+.+.+ -+.|..+..+|+|++||+.+. ..|.|-.+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccc
Confidence 3555677778999999988555566666552 336888999999999999875 478888775221
Q ss_pred EEEEecC------CCCcEEEEEecC-----CEEEEEeCCCcEEEEECcCCc-ceEeee---------cCcCCCEEEEEEe
Q 011971 242 RVRTMEG------HRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQE-DFVSKL---------SGHKSEVCGLKWS 300 (474)
Q Consensus 242 ~~~~~~~------h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~-~~~~~~---------~~h~~~V~~l~~s 300 (474)
..+.+.- ...+|..+.|+| ..|++-..|+.|++||+.... .+. .+ ......|.+++|.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEc
Confidence 1223321 357899999985 689999999999999998622 122 22 1233679999999
Q ss_pred cCCCEEEEEe--CCCcEEEE
Q 011971 301 YDNRELASGG--NDNRLFVW 318 (474)
Q Consensus 301 pd~~~lasg~--~Dg~v~iw 318 (474)
.++-.|.... ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77888754
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.06 E-value=0.036 Score=52.42 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=96.0
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeC-----C------CcEEEecCCCCeEEEE--
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTS-----H------GKVQIWDASRCKRVRT-- 245 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~gs~-----d------g~I~iwd~~~~~~~~~-- 245 (474)
++..|. ..+.+||..+++... ..+.. ...........++..++.|+. . ..+.+||..+.+-...
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 333443 789999999988764 43322 122233333457778888873 1 1277889887764322
Q ss_pred ecCCCCcEEEEEecCCEEEEEeCC--------CcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeC-C---
Q 011971 246 MEGHRLRVGALAWSSSLLSSGSRD--------KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGN-D--- 312 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~-D--- 312 (474)
+.........+.+.+.+++.|+.+ ..+.+||+.+..- .+..+.........+. -+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCc
Confidence 111111122334456677777642 4588899876541 1111111111122222 36677788876 2
Q ss_pred --CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011971 313 --NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTAD---RCIRFWNTTTNT 369 (474)
Q Consensus 313 --g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d---~~I~iwd~~~~~ 369 (474)
+.+.+||..+.+-... +........++.+ +..+++.||...+ ..+.+||+.+.+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4689999887643211 1111111223333 3457777752111 258889988764
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.06 E-value=0.072 Score=50.38 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=92.7
Q ss_pred CeEEEEeCCCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeC----CC-------cEEEecCCCCeEEEE--ecCCCCc
Q 011971 187 NCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTS----HG-------KVQIWDASRCKRVRT--MEGHRLR 252 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~gs~----dg-------~I~iwd~~~~~~~~~--~~~h~~~ 252 (474)
..+.+||..+++.... .... ...........++..++.|+. ++ .+.+||..+.+-... +......
T Consensus 24 ~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4689999999887663 3221 122223333456778888873 12 277888887664332 1111122
Q ss_pred EEEEEecCCEEEEEeCC-------CcEEEEECcCCcceEeeecCcC---CCEEEEEEecCCCEEEEEeC------CCcEE
Q 011971 253 VGALAWSSSLLSSGSRD-------KSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGN------DNRLF 316 (474)
Q Consensus 253 V~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spd~~~lasg~~------Dg~v~ 316 (474)
.....+.+.+++.|+.+ ..+.+||+.+.. ...+.... ..-..+. .++..++.|+. -+.+.
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEE
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEE
Confidence 23344566777777764 247788887654 12211111 1111222 46777777764 24599
Q ss_pred EEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011971 317 VWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTAD---RCIRFWNTTTNT 369 (474)
Q Consensus 317 iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d---~~I~iwd~~~~~ 369 (474)
+||..+.+-... +........++.+ +..+++.||...+ ..+.+||+.+.+
T Consensus 179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 999987653222 1111111222333 3457777752222 357789988765
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.03 E-value=0.36 Score=49.05 Aligned_cols=269 Identities=12% Similarity=0.108 Sum_probs=157.0
Q ss_pred cccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecC------------------------CCCCE
Q 011971 156 YKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG------------------------IDDSV 211 (474)
Q Consensus 156 ~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~------------------------~~~~V 211 (474)
.++.-+|+-.|+||. +.++|..|.|+|+-+.+++....+.+- ..+..
T Consensus 58 ~k~~v~pG~~Deyy~---------f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~ 128 (638)
T 3sbq_A 58 QKIHVGPGELDDYYG---------FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDC 128 (638)
T ss_dssp CCCCCCTTCCCSEEE---------EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCC
T ss_pred cccccCCCCcccEEE---------EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCc
Confidence 455556766777774 244556788888888887776665320 01111
Q ss_pred E--EEEEc---CCCCEEEEEeC-CCcEEEecCCCCeEEEEecC-CCCcEEEEEec--C--CEEEEEeCC-------CcEE
Q 011971 212 C--SVGWA---NRNTHLAVGTS-HGKVQIWDASRCKRVRTMEG-HRLRVGALAWS--S--SLLSSGSRD-------KSIL 273 (474)
Q Consensus 212 ~--~v~~s---p~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~--~--~~l~sgs~d-------g~I~ 273 (474)
. .+++. -||++|++-.. +..|-..++...++-..+.- ....+..+.|. + .+++.+++. |...
T Consensus 129 HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~ 208 (638)
T 3sbq_A 129 HHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVF 208 (638)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred CCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCccc
Confidence 1 23333 26788888765 56788888888887766653 45667777775 2 577777653 3211
Q ss_pred EEECcCCcce--EeeecCcC----------CCEEEEEEecCCCEEEEEeCCC---------------cEEEEE-------
Q 011971 274 QRDIRAQEDF--VSKLSGHK----------SEVCGLKWSYDNRELASGGNDN---------------RLFVWN------- 319 (474)
Q Consensus 274 iwd~~~~~~~--~~~~~~h~----------~~V~~l~~spd~~~lasg~~Dg---------------~v~iwd------- 319 (474)
.+...+.. ...+.+.+ +..-.+...+++.+.++.+.+. -+.+++
T Consensus 209 --~~~~~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~ 286 (638)
T 3sbq_A 209 --DLQDENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAA 286 (638)
T ss_dssp --CTTSTTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHH
T ss_pred --ccCChhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHH
Confidence 01111111 00111111 1222334456677766655321 244444
Q ss_pred ------------------CCC----CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC------ce-
Q 011971 320 ------------------QHS----TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN------TH- 370 (474)
Q Consensus 320 ------------------~~~----~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~------~~- 370 (474)
.+. +..+..+-.-......+..+|||++++++|- -+.++.++|+... +.
T Consensus 287 vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~ 364 (638)
T 3sbq_A 287 VKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLA 364 (638)
T ss_dssp HHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCS
T ss_pred HhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhcccc
Confidence 322 1111111111233457889999999999876 7899999998742 21
Q ss_pred ------eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceeEEEcCCCccEEEEEE-----
Q 011971 371 ------LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM----------SKLATLTGHTFRVLYLAI----- 429 (474)
Q Consensus 371 ------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~----- 429 (474)
......+-.....+|.++| ..+++ -+-|.+|..|++... ..+..+.-|-. +-.+.-
T Consensus 365 ~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTt-lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get 441 (638)
T 3sbq_A 365 DPRDVIVGEPELGLGPLHTTFDGRG-NAYTT-LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCET 441 (638)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSS-EEEEE-ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTS
T ss_pred CcccceEeeccCCCcccEEEECCCC-ceEee-eeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCcc
Confidence 4455567789999999999 33333 779999999998643 34556655544 333433
Q ss_pred -CCCCCEEEEEe
Q 011971 430 -SPDGQTIVTGA 440 (474)
Q Consensus 430 -spdg~~l~t~s 440 (474)
.+||++|++..
T Consensus 442 ~~~dGk~lv~ln 453 (638)
T 3sbq_A 442 NEADGKWLVALS 453 (638)
T ss_dssp TTCCSCEEEEEE
T ss_pred CCCCccEEEEec
Confidence 56888888874
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.91 E-value=0.33 Score=46.70 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=126.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE--EEEe----cCCCCcEEEEEecC-----CEEEEE---eCCCcEE
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--VRTM----EGHRLRVGALAWSS-----SLLSSG---SRDKSIL 273 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~--~~~~----~~h~~~V~~l~~~~-----~~l~sg---s~dg~I~ 273 (474)
-.....|+|.|+|.++++--..|.|.+++...++. +..+ .........|++++ ..|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 45788999999998666554489999998765543 2222 12356788999975 344432 2445666
Q ss_pred EEECcCC----------cceEeeec-CcCCCEEEEEEecCCCEEEEEeC-------------CCcEEEEECCCC------
Q 011971 274 QRDIRAQ----------EDFVSKLS-GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST------ 323 (474)
Q Consensus 274 iwd~~~~----------~~~~~~~~-~h~~~V~~l~~spd~~~lasg~~-------------Dg~v~iwd~~~~------ 323 (474)
-|.+... +.++..+. .....-..|.|.|||.++++.+. -|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665441 11111121 11123467999999988777542 355555565432
Q ss_pred ---cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce------------------eeeecCC-CCeE
Q 011971 324 ---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH------------------LSCMDTG-SQVC 381 (474)
Q Consensus 324 ---~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~------------------~~~~~~~-~~v~ 381 (474)
..+.. .+|. ....++|+|++. |+++-.| .|+.=.|--+..+.. +..+... ....
T Consensus 191 f~~~~i~a-~G~R-Np~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 191 FPGSPVYS-YGHR-NVQGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp STTCCEEE-BCCS-BCCEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCeEEe-eCCC-CcceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 11222 2444 346899999765 6666533 333222222222211 1222222 3556
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMS----KLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
.++|.. +..++. ....+.|....+.... ....+.+...++..|+..|||.++++..
T Consensus 267 G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 777763 444444 5556666666665432 2233445557899999999997666543
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.75 E-value=0.052 Score=51.17 Aligned_cols=226 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred CCCEEEEEeCC----CcEEEecCCCCeEEEE--ecCCCCcEEEEEecCCEEEEEeC----C-----CcEEEEECcCCcc-
Q 011971 219 RNTHLAVGTSH----GKVQIWDASRCKRVRT--MEGHRLRVGALAWSSSLLSSGSR----D-----KSILQRDIRAQED- 282 (474)
Q Consensus 219 ~g~~la~gs~d----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~~~~l~sgs~----d-----g~I~iwd~~~~~~- 282 (474)
++.+++.|+.+ ..+.+||..+.+-... +......-..+...+.+++.|+. + ..+.+||+.+..-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45566666632 3688899887764332 11111112233445667777765 2 4688889876541
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
.+..+.........+.+ +++.++.|+.+ ..+.+||..+.+-... +........++.+ +..+++.||..
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 178 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFD 178 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBC
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCC
Confidence 11111111122222222 67777777643 4688999877643221 1111112223333 34577777521
Q ss_pred C---CCeEEEEECCCCceeee--ecCCC-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceeE--EEcCCCcc
Q 011971 356 A---DRCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSKLA--TLTGHTFR 423 (474)
Q Consensus 356 ~---d~~I~iwd~~~~~~~~~--~~~~~-~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~--~l~~h~~~ 423 (474)
. -..+.+||+.+.+-... +.... ....+.+ ++ .|++..|.. .+.+.+||+.+.+-.. .+......
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 1 24588999887643222 11111 1222222 33 444443332 2578999987654322 12111111
Q ss_pred EEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 011971 424 VLYLAISPDGQTIVTGAGD-----ETLRFWNVFPSP 454 (474)
Q Consensus 424 V~~l~~spdg~~l~t~s~D-----g~I~iW~l~~~~ 454 (474)
...+.+ ++++++.|+.+ ..+.+||+....
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 122223 66677777654 347778876553
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.026 Score=54.23 Aligned_cols=111 Identities=8% Similarity=-0.012 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEecCCCCeEEEEecCC-CCcEEEEEec----CCEEEEE--eCCCcEEEEECcCCcceEeeecC---c
Q 011971 221 THLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRVGALAWS----SSLLSSG--SRDKSILQRDIRAQEDFVSKLSG---H 290 (474)
Q Consensus 221 ~~la~gs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~~----~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~---h 290 (474)
..+++++.||.|.-+|.++|+.+..+... ..++....-. ...++.+ +.||.|..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999988754 1222221111 2244444 58999999998776422111100 1
Q ss_pred CCCEEE---EEE-----ecCCCEEEEEeCCCcEEEEECCCCcceEEEcc
Q 011971 291 KSEVCG---LKW-----SYDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331 (474)
Q Consensus 291 ~~~V~~---l~~-----spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~ 331 (474)
..++.. ... ...+..+++|+.+|.++..|+++|+.+.++..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 122221 000 01456889999999999999999999998864
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.72 E-value=0.13 Score=48.56 Aligned_cols=219 Identities=10% Similarity=0.053 Sum_probs=106.7
Q ss_pred EEEEEeCCCcEEEecCCCCeEEE-EecCC--CCcEEEEEecCCEEEEEeC-----C------CcEEEEECcCCcceEeee
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVR-TMEGH--RLRVGALAWSSSLLSSGSR-----D------KSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~-~~~~h--~~~V~~l~~~~~~l~sgs~-----d------g~I~iwd~~~~~~~~~~~ 287 (474)
+++.|+ ..+.+||..+.+-.. .+... ......+...+.+++.|+. . ..+..||..+.. ...+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEEC
Confidence 344555 579999999887543 22221 1222233344677788873 1 127788887654 1222
Q ss_pred cCcC---CCEEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecC
Q 011971 288 SGHK---SEVCGLKWSYDNRELASGGND--------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 288 ~~h~---~~V~~l~~spd~~~lasg~~D--------g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
.... .....+.+ ++..++.|+.+ +.+.+||..+.+-... +........++.+ +..+++.||.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~ 157 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGK 157 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCB
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCC
Confidence 1111 11112222 66677777742 4589999887642211 1111111222222 3357777752
Q ss_pred CC----CCeEEEEECCCCceeee--ecCCC-CeEEEEEcCCCCeEEEEEecCCC----eEEEEECCCCceeEE--EcCCC
Q 011971 355 TA----DRCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHGYSQN----QIIVWRYPTMSKLAT--LTGHT 421 (474)
Q Consensus 355 t~----d~~I~iwd~~~~~~~~~--~~~~~-~v~~l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~~~~~--l~~h~ 421 (474)
.. -..+.+||+.+.+-... +.... ....+.+ ++ .|++..|.... .+.+||..+.+-... +....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 11 24688999887643221 11111 1122222 33 44444344332 688888876543222 11111
Q ss_pred ccEEEEEECCCCCEEEEEeCCC--------------cEEEEeCCCCC
Q 011971 422 FRVLYLAISPDGQTIVTGAGDE--------------TLRFWNVFPSP 454 (474)
Q Consensus 422 ~~V~~l~~spdg~~l~t~s~Dg--------------~I~iW~l~~~~ 454 (474)
.....+.+ ++++++.|+.++ .|.+||+....
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 11222333 667777777532 36677776553
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.59 E-value=1.4 Score=49.55 Aligned_cols=244 Identities=11% Similarity=0.030 Sum_probs=134.3
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe-cCCCCcEEEEEec------
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGHRLRVGALAWS------ 259 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~~------ 259 (474)
..|++.+...+.....+.......|.+.+.+ +.++++++ .+.+.++++..++..... ..-...|.|+++.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence 3566777665555555543334567766655 34677775 678888887765432211 1235679999986
Q ss_pred --CCEEEEEeC-CCcEEEEECcCCcceEeeecCcCCCEEEEEEec--CCCEEEEEeCCCcEEEEECC--CCcceEE--Ec
Q 011971 260 --SSLLSSGSR-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQH--STQPVLK--YC 330 (474)
Q Consensus 260 --~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~iwd~~--~~~~~~~--~~ 330 (474)
..+++.|.. |++|+|+++..-+.....-.+......++.+.. ...+|..|-.||.+..+.+. +++.... ..
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 268999997 999999999865422111111122344444432 33578899999998666543 4433221 11
Q ss_pred cCCCcEEEEEECCCCC-cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCC--CCeEEEEEecCCCeEEEEE
Q 011971 331 EHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~-~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd 407 (474)
-...++.-..+...+. .+++++ ++-..+|-....-....+....-.....|+.. ..-++.+ .++.++|..
T Consensus 649 LG~~pv~L~~~~~~~~~~V~a~s----~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~---~~~~LrI~~ 721 (1158)
T 3ei3_A 649 LGTQPTVLRTFRSLSTTNVFACS----DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA---NNSTLTIGT 721 (1158)
T ss_dssp CCSSCCEEEEEESSSCEEEEEES----SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE---CSSCEEEEE
T ss_pred cCCCceEEEEEeeCCceeEEEEC----CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE---cCCceEEEE
Confidence 1234554444443333 455543 45555554332212222222222233345442 2334442 456699988
Q ss_pred CCCCcee--EEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 408 YPTMSKL--ATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 408 ~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
+...... .++. -...+..++++|+.+.++.+..
T Consensus 722 i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 722 IDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp ECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred ecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 8655432 2222 2456889999998887666543
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.59 E-value=0.19 Score=49.41 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=93.6
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcceEEEccC----CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-----
Q 011971 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----- 370 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h----~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~----- 370 (474)
..+|..++.+- ++.||.-++......+.+... -..|..+..+|+|..|.+.| +..|.+..+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCSCCCCH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccccCccc
Confidence 34566655554 378888887754444444332 23578899999998666554 67899988873321
Q ss_pred -------eeeec-------CCCCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCC--ceeEEEc---------CCCc
Q 011971 371 -------LSCMD-------TGSQVCNLVWSKNV---NELVSTHGYSQNQIIVWRYPTM--SKLATLT---------GHTF 422 (474)
Q Consensus 371 -------~~~~~-------~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~---------~h~~ 422 (474)
...+. ....|..+.|+|-+ ..|++ -..|+.|++||+... ++. .+. ....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV--LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV--LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE--EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE--EecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 11222 24679999999954 56777 448999999999752 122 332 2235
Q ss_pred cEEEEEECCCCCEEEEEe--CCCcEEEEe
Q 011971 423 RVLYLAISPDGQTIVTGA--GDETLRFWN 449 (474)
Q Consensus 423 ~V~~l~~spdg~~l~t~s--~Dg~I~iW~ 449 (474)
.|.+++|..+|-.|...+ ..|.|+-.-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 688999999888777755 778776543
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.43 E-value=0.19 Score=47.35 Aligned_cols=220 Identities=11% Similarity=0.113 Sum_probs=104.7
Q ss_pred EEEEEeCCCcEEEecCCCCeEEE-EecC--CCCcEEEEEecCCEEEEEeC----CC-------cEEEEECcCCcceEeee
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVR-TMEG--HRLRVGALAWSSSLLSSGSR----DK-------SILQRDIRAQEDFVSKL 287 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~-~~~~--h~~~V~~l~~~~~~l~sgs~----dg-------~I~iwd~~~~~~~~~~~ 287 (474)
.++.|+. .+.+||..+.+-.. .+.. .......+...+.+++.|+. ++ .+.+||..+.. ...+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEEC
Confidence 3444443 48899998877544 2221 11122223334677788873 12 17778877654 1222
Q ss_pred c---CcCCCEEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 288 S---GHKSEVCGLKWSYDNRELASGGND-------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 288 ~---~h~~~V~~l~~spd~~~lasg~~D-------g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
. ........+.+ ++..++.|+.+ ..+.+||..+.+-... +........++. .+..|++.||..
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~ 168 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS---HNGMIYCLGGKT 168 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE---ETTEEEEECCEE
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE---ECCEEEEEcCCC
Confidence 1 11111222222 67778888764 3588899887643321 111111111222 234577777521
Q ss_pred C----CCeEEEEECCCCceeee--ecCCCCeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCce--eEEEcCCCcc
Q 011971 356 A----DRCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNELVSTHGYSQ----NQIIVWRYPTMSK--LATLTGHTFR 423 (474)
Q Consensus 356 ~----d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~~~--~~~l~~h~~~ 423 (474)
. -..+.+||+.+.+-... +.....-..++.. ++ .|++..|..+ +.+.+||..+.+- +..+......
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 1 24589999987643222 1111111122222 33 4444434332 3577888876532 2222211111
Q ss_pred EEEEEECCCCCEEEEEeCC--------------CcEEEEeCCCCC
Q 011971 424 VLYLAISPDGQTIVTGAGD--------------ETLRFWNVFPSP 454 (474)
Q Consensus 424 V~~l~~spdg~~l~t~s~D--------------g~I~iW~l~~~~ 454 (474)
...+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 247 ISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 122223 56677776654 347777776543
No 333
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.41 E-value=0.44 Score=44.84 Aligned_cols=165 Identities=9% Similarity=-0.031 Sum_probs=96.2
Q ss_pred CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe----CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCC
Q 011971 270 KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG----NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 270 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~----~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
..|+..++..... ..+.. .. +..|++++++|+-.. ....|+..++.... ...+..+.. .++++++
T Consensus 88 ~~Iy~i~~dg~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEEC
Confidence 3566667665542 22221 11 236778888888775 34467777776443 445544433 4567788
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEE
Q 011971 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL 425 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 425 (474)
+.|+.+.. ....|..-++..+.....+. .... ..+.|++.+|+-+.......|..-++.... ...+.. ..+
T Consensus 157 ~~iy~t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~- 227 (302)
T 3s25_A 157 RYFYYNNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI- 227 (302)
T ss_dssp TEEEEECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE-
T ss_pred CEEEEEeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc-
Confidence 88888754 36789888987765443332 2222 345699999988654333567666665443 333332 223
Q ss_pred EEEECCCCCEEEEEe--CCCcEEEEeCCCCCC
Q 011971 426 YLAISPDGQTIVTGA--GDETLRFWNVFPSPK 455 (474)
Q Consensus 426 ~l~~spdg~~l~t~s--~Dg~I~iW~l~~~~~ 455 (474)
..|+|++.+|+-++ ..+.|..-+++...+
T Consensus 228 -~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r 258 (302)
T 3s25_A 228 -EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF 258 (302)
T ss_dssp -EEEEEETTEEEEEECSSSCEEEEEETTSCCC
T ss_pred -ceEEECCCEEEEEECCCCcEEEEEECCCCcc
Confidence 23677888887653 235566666665543
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.013 Score=56.36 Aligned_cols=199 Identities=7% Similarity=-0.056 Sum_probs=109.3
Q ss_pred CCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEE--cCCCCEEEEE--eCCCcEEEecCCCCeEEEEecC-
Q 011971 175 WSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGW--ANRNTHLAVG--TSHGKVQIWDASRCKRVRTMEG- 248 (474)
Q Consensus 175 ~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~--sp~g~~la~g--s~dg~I~iwd~~~~~~~~~~~~- 248 (474)
|.- +.+++++.||.|+-.|..+|+..-.++.....++....- .+.+..++++ +.||.|..++..++.....+..
T Consensus 7 ~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 7 LSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp SEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred ceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 444 456667789999999999999877765431122222110 0112234444 5899999999988865544431
Q ss_pred ---CCCcEEE---EEe-------cCCEEEEEeCCCcEEEEECcCCcceEeeecCc-C-C------CEEEEEEe-----cC
Q 011971 249 ---HRLRVGA---LAW-------SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-K-S------EVCGLKWS-----YD 302 (474)
Q Consensus 249 ---h~~~V~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~-~------~V~~l~~s-----pd 302 (474)
...++.. ... .+..+++|+.+|.+...|+++++. +..+... . . +. |.... ..
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~e~-~~~~~d~~~d~~ 164 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-ISAFGPGSKNGYFGSQSVD-CSPEEKIKLQEC 164 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE-EEEESTTCBCC---------------------
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-EEEEecCCCcccccccccc-cccccccccccC
Confidence 1222221 011 467889999999999999999884 3333221 1 1 11 11110 12
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEc-----cCCCc--EE-EEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-e
Q 011971 303 NRELASGGNDNRLFVWNQHSTQPVLKYC-----EHTAA--VK-AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-C 373 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~~~~~~~-----~h~~~--V~-~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~-~ 373 (474)
+..++.|..+..+.+.+ ++++ +..+. ..... +. .-..+.++.. +++. .||.|..+|..+|..+. .
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~---~dg~v~A~d~~~G~~~W~~ 238 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPF---RDKSLLASDLDFRIARWVS 238 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEE---TTTEEEEECSTTCCEEEEC
T ss_pred CCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEEC---CCCEEEEEECCCCcEEEEe
Confidence 35677777777777766 4443 22211 10000 00 0000123444 3332 79999999999999877 5
Q ss_pred ecCCCCeE
Q 011971 374 MDTGSQVC 381 (474)
Q Consensus 374 ~~~~~~v~ 381 (474)
.+..+++.
T Consensus 239 ~~l~sPv~ 246 (339)
T 2be1_A 239 PTFPGIIV 246 (339)
T ss_dssp CCCSSCEE
T ss_pred ecCCCCeE
Confidence 55555544
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.26 E-value=0.78 Score=43.12 Aligned_cols=238 Identities=10% Similarity=0.016 Sum_probs=134.9
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEecCCCCeEEEEecCCCC
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--------------GKVQIWDASRCKRVRTMEGHRL 251 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d--------------g~I~iwd~~~~~~~~~~~~h~~ 251 (474)
++.|+..+.......++.. +. +--++++|++|+..... ..|+..++...+...... .
T Consensus 36 ~~~ly~~~~dg~~~~~l~~----~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~ 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSN----DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D 106 (302)
T ss_dssp TTEEEEEETTSCSCEEEEE----EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S
T ss_pred CceEEEEcCCCCCCEEccC----Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C
Confidence 5688888887777666653 22 34557889988877653 356777776654333222 1
Q ss_pred cEEEEEecCCEEEEEe--CC--CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCcce
Q 011971 252 RVGALAWSSSLLSSGS--RD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPV 326 (474)
Q Consensus 252 ~V~~l~~~~~~l~sgs--~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-Dg~v~iwd~~~~~~~ 326 (474)
....++..++.|+-.. .+ ..|...++.... ...+..+.. ..|+++++.|.-.+. ...|++.++..+...
T Consensus 107 ~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 2234555677776655 33 445555555433 333433332 456778888886665 678999998776544
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
..+. +... ..++|++..|+.+..+ ....|..-++......... ...+ ..|+|+++.|+.+.....+.|..-
T Consensus 181 ~l~~---~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~ 251 (302)
T 3s25_A 181 LFYD---CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVV 251 (302)
T ss_dssp EEEC---SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEE
T ss_pred EEeC---CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEE
Confidence 3332 2222 3356999888887642 2246777777655433222 2233 347888998887433334677777
Q ss_pred ECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEEEEeCCC
Q 011971 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLRFWNVFP 452 (474)
Q Consensus 407 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~ 452 (474)
++..........+ .+..+ ++.+.+|+-.. ..+.|..-+++.
T Consensus 252 ~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 252 KNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp ETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEESSS
T ss_pred ECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEECCC
Confidence 7754332222222 24444 44566776554 345555555443
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.24 E-value=0.47 Score=45.39 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCcEEEEEc--CCeEEEEeCCC--CCEEEEEecC-CCC-CEEEEEEcCCCCEEEEEeC-C---------CcEEEecCCCC
Q 011971 177 SHNVLAVGL--GNCVYLWNACS--SKVTKLCDLG-IDD-SVCSVGWANRNTHLAVGTS-H---------GKVQIWDASRC 240 (474)
Q Consensus 177 ~~~~la~~~--d~~V~lwd~~~--~~~~~~~~~~-~~~-~V~~v~~sp~g~~la~gs~-d---------g~I~iwd~~~~ 240 (474)
.+.+++.|. .+.++++|..+ .+...+..+. ... ...++.+ ++.+++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 345555543 45899999974 6666554433 211 2222222 5667777765 2 36889999887
Q ss_pred eEEEEe--c-CCCCcEEEEEecCCEEEEEeCC
Q 011971 241 KRVRTM--E-GHRLRVGALAWSSSLLSSGSRD 269 (474)
Q Consensus 241 ~~~~~~--~-~h~~~V~~l~~~~~~l~sgs~d 269 (474)
+-...- . .......++...+.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 644322 1 1112233444667788888765
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.23 E-value=0.054 Score=52.18 Aligned_cols=233 Identities=9% Similarity=-0.019 Sum_probs=107.9
Q ss_pred CCCEEEEEeC-CCcEEEecCCC-CeEEEEecC----CCCcEEEEEecCCEEEEEeC-C---------CcEEEEECcCCcc
Q 011971 219 RNTHLAVGTS-HGKVQIWDASR-CKRVRTMEG----HRLRVGALAWSSSLLSSGSR-D---------KSILQRDIRAQED 282 (474)
Q Consensus 219 ~g~~la~gs~-dg~I~iwd~~~-~~~~~~~~~----h~~~V~~l~~~~~~l~sgs~-d---------g~I~iwd~~~~~~ 282 (474)
++.+++.|+. ...+.+||..+ ...-..+.. ....-.++...+.+++.|+. + ..+.+||+.+..-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 4455555543 23577888763 122222221 11222334455667777765 2 4688899877541
Q ss_pred -eEeeec-CcCCCEEEEEEecCCCEEEEEeCC---------------------------------------CcEEEEECC
Q 011971 283 -FVSKLS-GHKSEVCGLKWSYDNRELASGGND---------------------------------------NRLFVWNQH 321 (474)
Q Consensus 283 -~~~~~~-~h~~~V~~l~~spd~~~lasg~~D---------------------------------------g~v~iwd~~ 321 (474)
.+..+. ........+. .+++.++.|+.+ +.+.+||..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 111111 1111222222 577788888865 579999988
Q ss_pred CCcceEE--EccCCCcEEEEEECCCCCcEEEEecCC----CCCeEEEEEC--CCCcee--eeecCCCC-eEEEEEcCCCC
Q 011971 322 STQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGT----ADRCIRFWNT--TTNTHL--SCMDTGSQ-VCNLVWSKNVN 390 (474)
Q Consensus 322 ~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt----~d~~I~iwd~--~~~~~~--~~~~~~~~-v~~l~~s~~~~ 390 (474)
+.+-... +......-.+++.. +..+++.||.. ....+..||+ .+.+-. ..+..... ....+...++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 253 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND- 253 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT-
T ss_pred CCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC-
Confidence 7643322 21111110122222 34577776521 1345777876 333211 11111111 1111122234
Q ss_pred eEEEEEecCC---------------------CeEEEEECCCC--ceeEEEcCCCccEEEEEECCCCCEEEEEeCCC----
Q 011971 391 ELVSTHGYSQ---------------------NQIIVWRYPTM--SKLATLTGHTFRVLYLAISPDGQTIVTGAGDE---- 443 (474)
Q Consensus 391 ~l~~~~g~~d---------------------g~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg---- 443 (474)
.|++..|... ..+.+||+.+. +.+..+......-..+. -++++++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCE
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCE
Confidence 4444433211 25778888754 44444432222222233 3777888888653
Q ss_pred --cEEEEeCCCCCCCCC
Q 011971 444 --TLRFWNVFPSPKSQN 458 (474)
Q Consensus 444 --~I~iW~l~~~~~~~~ 458 (474)
.|.++++.+++..+.
T Consensus 332 ~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEEC-CCSCEEE
T ss_pred eeeEEEEEEcCcEeEee
Confidence 355567776665443
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.12 E-value=0.14 Score=57.65 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=123.4
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCC-CCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe-------CCCcEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACS-SKVTKLCDLG---IDDSVCSVGWANRNTHLAVGT-------SHGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~-~~~~~~~~~~---~~~~V~~v~~sp~g~~la~gs-------~dg~I~iwd~~ 238 (474)
|....|-+.+.|+.-.+..|+.|++.+ ....++++.. ....|..-..+++.++++..+ -.|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 677788888889999999999999974 2344444321 145677788888888877543 35889999987
Q ss_pred CCeEEEEecCCCCcEEEEEecC-----CEEEEEeC---CCcEEEEECcCC--c--ce----Eeeec---CcCCCEEEEEE
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS-----SLLSSGSR---DKSILQRDIRAQ--E--DF----VSKLS---GHKSEVCGLKW 299 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~---dg~I~iwd~~~~--~--~~----~~~~~---~h~~~V~~l~~ 299 (474)
.+ ....+.||.+....+...+ .+++.+.. .+.+.|.++... . .. +..+. .-.....++..
T Consensus 188 r~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred cc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 53 3455677777666655542 23333332 378888888553 1 11 00111 11334456777
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 300 spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
++....+..-+.-|.|+++|+.++..+..-+-....|...+-......++... ..|.|.-..+...
T Consensus 267 s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vn---r~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEE 332 (1630)
T ss_pred ccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEc---CCceEEEEEEccc
Confidence 78777888888999999999999988766544445555444444444455443 3555544444433
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.07 E-value=1.4 Score=44.11 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE--EEEecC------CCCcEEEEEecC-----CEEEEEeC-------
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--VRTMEG------HRLRVGALAWSS-----SLLSSGSR------- 268 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~--~~~~~~------h~~~V~~l~~~~-----~~l~sgs~------- 268 (474)
....+|+|.|+|+++++-...+.|.+++..+++. +..+.. .......|+|++ ..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4678999999998666543334788887655543 223321 245677999984 44444432
Q ss_pred ------CCcEEEEECcCCc-------ceEeeec-CcCCCEEEEEEecCCCEEEEEeC
Q 011971 269 ------DKSILQRDIRAQE-------DFVSKLS-GHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 269 ------dg~I~iwd~~~~~-------~~~~~~~-~h~~~V~~l~~spd~~~lasg~~ 311 (474)
...|.-++..... .++..+. ........|.|.|||.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2346556553221 1111121 11234789999999988777553
No 340
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.03 E-value=1.2 Score=42.94 Aligned_cols=199 Identities=10% Similarity=0.025 Sum_probs=106.2
Q ss_pred CCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeee---cCcCCCEEEEEEecC---CCEEEEEeC----C----Cc
Q 011971 250 RLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYD---NRELASGGN----D----NR 314 (474)
Q Consensus 250 ~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spd---~~~lasg~~----D----g~ 314 (474)
-.....|+|.+ ..|+++..+|.|.++|.. +...+..+ ........+|+++|+ +..|.++.. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34567888873 457777778999998743 22222221 122356899999997 445544433 3 67
Q ss_pred EEEEECCCC-------cceE-EEcc-CCCcEEEEEECCCCCcEEEEec-C----------CCCCeEEEEECCCC------
Q 011971 315 LFVWNQHST-------QPVL-KYCE-HTAAVKAIAWSPHLHGLLASGG-G----------TADRCIRFWNTTTN------ 368 (474)
Q Consensus 315 v~iwd~~~~-------~~~~-~~~~-h~~~V~~l~~sp~~~~ll~sg~-G----------t~d~~I~iwd~~~~------ 368 (474)
|..|+.... +.+. .+.. .......|+|.|+|. |+++.+ . +..+.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 888887654 1111 1221 112346799999996 555532 1 01245666665421
Q ss_pred ---ceeeeecCCCCeEEEEEcC-CCCeEEEEEecCCC--eEEEEECCC----------------CceeEEEcCCCccEEE
Q 011971 369 ---THLSCMDTGSQVCNLVWSK-NVNELVSTHGYSQN--QIIVWRYPT----------------MSKLATLTGHTFRVLY 426 (474)
Q Consensus 369 ---~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg--~I~iwd~~~----------------~~~~~~l~~h~~~V~~ 426 (474)
..+... .......++|++ ++..+++-++ .+. .|.+..-.. ..++..+.........
T Consensus 186 f~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSY-GHRNPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEEE-CCSCCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEEE-ccCCcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 011111 123467899999 5555554322 221 233322100 0223333112235677
Q ss_pred EEEC-------CCCCEEEEEeCCCcEEEEeCCC
Q 011971 427 LAIS-------PDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 427 l~~s-------pdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
++|. .+|.++++.-..+.|...++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 8883 4676776666667777777764
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.78 E-value=0.43 Score=42.58 Aligned_cols=145 Identities=12% Similarity=0.029 Sum_probs=86.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc------eEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP------VLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~------~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --....++.|.|+|. |.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe----CCCEEEEeC
Confidence 36779999999987777 667777777654221 112210 111247899999987 5554 268988887
Q ss_pred CCCCceee------eecC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------eeEEEc-CCCccEEEEEE
Q 011971 365 TTTNTHLS------CMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS------KLATLT-GHTFRVLYLAI 429 (474)
Q Consensus 365 ~~~~~~~~------~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------~~~~l~-~h~~~V~~l~~ 429 (474)
-.+...-. .+.. -..+..|.+.|+|...++ . ++.++-+..++.. ....+. ..-.....+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav--~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV--H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 54322111 1111 135789999999998887 4 6665544444222 111221 33334556789
Q ss_pred CCCCCEEEEEeCCCcEEEEeCC
Q 011971 430 SPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 430 spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.++|.+.+.. +| +||...
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEES
T ss_pred CCCCcEEEEe--CC--eEEecC
Confidence 9999766655 77 455553
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.77 E-value=0.24 Score=52.56 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=100.7
Q ss_pred CeEEEEeCCCCCEEEEE-e-----cCCCCCEEEEEEcC-CCCEEEEEeCCC------cEEEecCCCCeEEEE--ecCCCC
Q 011971 187 NCVYLWNACSSKVTKLC-D-----LGIDDSVCSVGWAN-RNTHLAVGTSHG------KVQIWDASRCKRVRT--MEGHRL 251 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~-~-----~~~~~~V~~v~~sp-~g~~la~gs~dg------~I~iwd~~~~~~~~~--~~~h~~ 251 (474)
+.+++||..+++...+. . ......-.+++... ++..++.|+.++ .+.+||..+.+-... +.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 46999999998887765 3 11211222333333 677778877543 578899887654332 222222
Q ss_pred cEEEEEe-cCCEEEEEeCCC--cEEEEECcCCcceEeeec------CcCCCEEEEEEecC-CCEEEEEeC--C-----Cc
Q 011971 252 RVGALAW-SSSLLSSGSRDK--SILQRDIRAQEDFVSKLS------GHKSEVCGLKWSYD-NRELASGGN--D-----NR 314 (474)
Q Consensus 252 ~V~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spd-~~~lasg~~--D-----g~ 314 (474)
.-.++.+ ++.+++.|+.++ .+.+||+.+.. ...+. .......++.+..+ +..++.||. + +.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 2334444 577888887655 68999988754 22211 11222234555555 667778775 2 45
Q ss_pred EEEEECCCCcc-----eEEEcc----CCCcEEEEEECCCCCcEEEEecCC------CCCeEEEEECCCCce
Q 011971 315 LFVWNQHSTQP-----VLKYCE----HTAAVKAIAWSPHLHGLLASGGGT------ADRCIRFWNTTTNTH 370 (474)
Q Consensus 315 v~iwd~~~~~~-----~~~~~~----h~~~V~~l~~sp~~~~ll~sg~Gt------~d~~I~iwd~~~~~~ 370 (474)
+.+||+.+.+. -..+.. ......++.+ .+ ..+++.||.. ....|.+||+.+.+-
T Consensus 570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TP-RKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ET-TEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CC-CEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 89999887761 111111 1112222332 22 3577777521 235689999987654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.67 E-value=0.65 Score=49.21 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=84.1
Q ss_pred CCCCEEEEEeCC----CcEEEecCCCCeEEEEe-c-------CCCCcEEEEEe--cCCEEEEEeCCC------cEEEEEC
Q 011971 218 NRNTHLAVGTSH----GKVQIWDASRCKRVRTM-E-------GHRLRVGALAW--SSSLLSSGSRDK------SILQRDI 277 (474)
Q Consensus 218 p~g~~la~gs~d----g~I~iwd~~~~~~~~~~-~-------~h~~~V~~l~~--~~~~l~sgs~dg------~I~iwd~ 277 (474)
-++..++.|+.+ ..+.+||..+.+....- . .....-..+.+ ++.+++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777653 35888998877544332 1 11122344555 566777777543 5788888
Q ss_pred cCCcceEeeecC---cCCCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCcceEEE-----ccCCCcEEEEEECCCCCc
Q 011971 278 RAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDN--RLFVWNQHSTQPVLKY-----CEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 278 ~~~~~~~~~~~~---h~~~V~~l~~spd~~~lasg~~Dg--~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~ 347 (474)
.+.. ...+.. ....- +++...++..++.||.++ .+.+||..+.+-...- ........++.+......
T Consensus 476 ~t~~--W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTE--EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCc--EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 7754 111111 11111 222224788888888755 6999998876432211 111222234555655456
Q ss_pred EEEEecCCCC-----CeEEEEECCCCc
Q 011971 348 LLASGGGTAD-----RCIRFWNTTTNT 369 (474)
Q Consensus 348 ll~sg~Gt~d-----~~I~iwd~~~~~ 369 (474)
+++.||...+ ..+..||+.+..
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 8888763223 468899988876
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.61 E-value=1.2 Score=44.59 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc--eEEEcc------CCCcEEEEEECCC---CCcEEEEecC-----
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYCE------HTAAVKAIAWSPH---LHGLLASGGG----- 354 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~--~~~~~~------h~~~V~~l~~sp~---~~~ll~sg~G----- 354 (474)
-....+|+|.|+|+++++-...+.|++++..+++. +..+.. ....+..|+|+|+ +..|+++-..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 44678999999998777755545799988765543 222221 2456779999996 5666666421
Q ss_pred C-C----CCeEEEEECCCC--c-----eee-eec--CCCCeEEEEEcCCCCeEEEE
Q 011971 355 T-A----DRCIRFWNTTTN--T-----HLS-CMD--TGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 355 t-~----d~~I~iwd~~~~--~-----~~~-~~~--~~~~v~~l~~s~~~~~l~~~ 395 (474)
+ . ...|.-|+...+ . .+. .+. .......|+|.++|...+++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 0 0 134555554322 1 111 122 12457899999999766654
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.43 E-value=1.4 Score=42.17 Aligned_cols=150 Identities=14% Similarity=0.029 Sum_probs=86.6
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce--EEE----ccCCCcEEEEEECCC---CCcEEEEecCCCC
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV--LKY----CEHTAAVKAIAWSPH---LHGLLASGGGTAD 357 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~--~~~----~~h~~~V~~l~~sp~---~~~ll~sg~Gt~d 357 (474)
+...-....+|+|.|||+++++--..|.|++++...++.. ..+ .........|+++|+ +..|+++-....+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3334456789999999997777665899999987655432 222 123566889999996 4456554221134
Q ss_pred CeEEEEECCCC----------cee-eeec--CCCCeEEEEEcCCCCeEEEEEec------------CCCeEEEEECCCC-
Q 011971 358 RCIRFWNTTTN----------THL-SCMD--TGSQVCNLVWSKNVNELVSTHGY------------SQNQIIVWRYPTM- 411 (474)
Q Consensus 358 ~~I~iwd~~~~----------~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~------------~dg~I~iwd~~~~- 411 (474)
..|.-|....+ +.+ ..+. .......|.|.|+|...+++ |. ..|.|.-.+....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 55665655441 111 1122 12345679999999655553 42 1244444443321
Q ss_pred --------ceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 412 --------SKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 412 --------~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
..+. -.+|.. ...++|.|+|.+.++-
T Consensus 186 p~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence 1111 125543 4679999988766543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.21 E-value=3.1 Score=42.29 Aligned_cols=229 Identities=7% Similarity=0.048 Sum_probs=136.2
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEecCCC-------------CcE--------------EEEEec-----CCEEEEEe-C
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHR-------------LRV--------------GALAWS-----SSLLSSGS-R 268 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~~~h~-------------~~V--------------~~l~~~-----~~~l~sgs-~ 268 (474)
.+.+|+..|.|+|+-+.+++.+..+.-.. ..| ..+++. +.+|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36788889999999999999888764111 000 012221 34555544 4
Q ss_pred CCcEEEEECcCCcceEeeecCcCCCEEEEEEe--cCCCEEEEEeC-------CCcEE------------EEECCCCcceE
Q 011971 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS--YDNRELASGGN-------DNRLF------------VWNQHSTQPVL 327 (474)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--pd~~~lasg~~-------Dg~v~------------iwd~~~~~~~~ 327 (474)
+..|-..+++.-+.-...-....+.+.++.|- |+..+++.+++ ||... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 45566667766542222223456778888886 67788888774 33321 12333333322
Q ss_pred EEccCCCcEEEEEECCCCCcEEEEecCCCC------------C-------------------------eEEEEECCC---
Q 011971 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTAD------------R-------------------------CIRFWNTTT--- 367 (474)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d------------~-------------------------~I~iwd~~~--- 367 (474)
++.- .+..-.+...+++.+.++++-.++. . .+.+.|.+.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2211 2233345567777777776632111 1 234444433
Q ss_pred -C-ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-------------eEEEcCCCccEEEEEECCC
Q 011971 368 -N-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK-------------LATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 368 -~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-------------~~~l~~h~~~V~~l~~spd 432 (474)
+ ..+..+........+..+|||+++++. |--+..+.|+|+..... +.+.. -....++.+|.++
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC
Confidence 1 122333344556678899999999997 77889999999874211 33333 2345688999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 011971 433 GQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~~~ 453 (474)
|....|.--|..|.-|++...
T Consensus 389 G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHH
T ss_pred CceEeeeeecceEEEEeccHH
Confidence 955556668999999999753
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.28 E-value=2.6 Score=39.03 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=115.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeec
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (474)
..|..|+.... +.+.-. ||.|..|-......+..-......|..++......+.-. ||.|+.|-.....++-. -.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~ 98 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA 98 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc
Confidence 35666665432 333335 899999865432211111112335777777654444345 99999997655432111 11
Q ss_pred CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 289 ~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
.-...|..++...+ +.+.-. ||.|+.|-....-.+-.-......|..++.-.. ..+++ .|+.|..|-....
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~-~~~~l-----~~G~v~~wG~n~~ 169 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY-TALAV-----KNGGVIAWGDNYF 169 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE-----ETTEEEEEECCTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC-EEEEE-----ECCEEEEecCCCC
Confidence 11346777776544 333334 899999976542211111122345666665543 22332 2678888865542
Q ss_pred cee-eeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEE
Q 011971 369 THL-SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRF 447 (474)
Q Consensus 369 ~~~-~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~i 447 (474)
-.+ ........|..++...+ ..++ - .+|.|+.|-....-.+..-......|..++...+. .++ -. ||.|+.
T Consensus 170 gqlg~p~~~~~~v~~i~~G~~--hs~a--l-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a-l~-~g~v~~ 241 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGIF--HSLA--L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA-LK-NGKVIA 241 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSS--EEEE--E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE-EE-TTEEEE
T ss_pred CCCCCceecCCCeEEEEecCC--EEEE--E-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE-EE-CCEEEE
Confidence 221 11112345665554332 2233 2 48889999765432222111122457777765543 333 33 999999
Q ss_pred EeCCCCC
Q 011971 448 WNVFPSP 454 (474)
Q Consensus 448 W~l~~~~ 454 (474)
|--....
T Consensus 242 wG~n~~g 248 (282)
T 3qhy_B 242 WGSSRTA 248 (282)
T ss_dssp ESTTCCC
T ss_pred ecCCCCc
Confidence 9766543
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.99 E-value=1.2 Score=39.71 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=78.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCc------ceEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 303 NRELASGGNDNRLFVWNQHSTQ------PVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~------~~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
...|....+| +|+.=....+. ...++-. --..++.++|+|++. |.+. . ++.+.-.+..+.....-+.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~---~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-L---NDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-E---TTEEEEESCCCSTTCCHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-e---CCeEEEECCCCCCcccccc
Confidence 4466666777 66554444433 2233321 134778999999876 6665 2 6777777765533222111
Q ss_pred CCCC--------eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCcee------EEE-cCCCccEEEEEECCCCCEEEEEe
Q 011971 376 TGSQ--------VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL------ATL-TGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 376 ~~~~--------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~------~~l-~~h~~~V~~l~~spdg~~l~t~s 440 (474)
.... ...+.|.++|...++ .||.|+-++-++...- ..+ .+-=..+..|.+.|+|.+.+..
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav----~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV----SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cccEecccccccceEEEECCCCCEEEe----CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1222 377889999988777 4588887776542111 111 1122467899999999755544
Q ss_pred CCCcEE
Q 011971 441 GDETLR 446 (474)
Q Consensus 441 ~Dg~I~ 446 (474)
|+.++
T Consensus 153 -dg~ly 157 (236)
T 1tl2_A 153 -GQQFY 157 (236)
T ss_dssp -TTEEE
T ss_pred -CCcEE
Confidence 77754
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.52 E-value=5.4 Score=38.09 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=115.2
Q ss_pred eeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEE-EEec-----CCCCCEEEEEEcCC---CCEEEEEeC--------CC
Q 011971 170 LNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTK-LCDL-----GIDDSVCSVGWANR---NTHLAVGTS--------HG 230 (474)
Q Consensus 170 v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~-~~~~-----~~~~~V~~v~~sp~---g~~la~gs~--------dg 230 (474)
...|+|.+ +. ++++...+.|++++.. +.... +..+ ........|+|+|+ +..|.+... ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 46788888 66 8887788999999854 33221 1111 12346789999996 555555432 23
Q ss_pred cEEEecCCCC----eEEEE-ecC------CCCcEEEEEecC-CEEEEEeCC--------------CcEEEEECcCCc---
Q 011971 231 KVQIWDASRC----KRVRT-MEG------HRLRVGALAWSS-SLLSSGSRD--------------KSILQRDIRAQE--- 281 (474)
Q Consensus 231 ~I~iwd~~~~----~~~~~-~~~------h~~~V~~l~~~~-~~l~sgs~d--------------g~I~iwd~~~~~--- 281 (474)
.|..|++... ..... +.. .......|+|.+ ..|+.+..| |.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 4666665432 11111 111 111235688874 344444322 467777765320
Q ss_pred ---------ceEeeecCcCCCEEEEEEecCCCEEEEEeCCC--cEEEEECCCC---------------------------
Q 011971 282 ---------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--RLFVWNQHST--------------------------- 323 (474)
Q Consensus 282 ---------~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg--~v~iwd~~~~--------------------------- 323 (474)
.....-.+| ....+++|+|+...|.++.... .=.|.-+..+
T Consensus 179 npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp CTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 001111233 2368899999433444433321 1112111111
Q ss_pred ----cceEEEccCCCcEEEEEECCC------CCcEEEEecCCCCCeEEEEECCCCceeee--e--cCCCCeEEEEEcCCC
Q 011971 324 ----QPVLKYCEHTAAVKAIAWSPH------LHGLLASGGGTADRCIRFWNTTTNTHLSC--M--DTGSQVCNLVWSKNV 389 (474)
Q Consensus 324 ----~~~~~~~~h~~~V~~l~~sp~------~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~--~--~~~~~v~~l~~s~~~ 389 (474)
.++..+. +...+..++|... ...++++.- ..+.|...++..++.... + .....+..+++.|+|
T Consensus 258 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 258 AGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL--KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp TTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET--TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc--cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 1223332 2345677888642 134555543 567888888776543322 1 124578999999999
Q ss_pred CeEEE
Q 011971 390 NELVS 394 (474)
Q Consensus 390 ~~l~~ 394 (474)
..+++
T Consensus 335 ~lyv~ 339 (353)
T 2g8s_A 335 YLYVL 339 (353)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 86665
No 350
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.82 E-value=9.7 Score=36.78 Aligned_cols=262 Identities=13% Similarity=0.092 Sum_probs=125.9
Q ss_pred CcEEEEEcCCeEEEEeCCC-CC-------EEEEE-ec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC------
Q 011971 178 HNVLAVGLGNCVYLWNACS-SK-------VTKLC-DL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------ 240 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~-~~-------~~~~~-~~--~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~------ 240 (474)
..+++...++.|+.|=... ++ ....- .+ -....|..|+- ...+.++-..||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 4567777889999996543 11 11111 01 01123444443 3455666677888888853211
Q ss_pred -----eEEEEecC-CCCcEEEEEe--cCCEEEEEeCCCcEEEEECcCCcce----------EeeecC-cCCCEEEEEEec
Q 011971 241 -----KRVRTMEG-HRLRVGALAW--SSSLLSSGSRDKSILQRDIRAQEDF----------VSKLSG-HKSEVCGLKWSY 301 (474)
Q Consensus 241 -----~~~~~~~~-h~~~V~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~~-h~~~V~~l~~sp 301 (474)
.....+.. ....+..++. .....+.-..||.|+.|-.....++ ...+.. ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G- 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG- 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-
T ss_pred CcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-
Confidence 11222222 2223433444 3567777789999999965432110 111111 12256666543
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-c----------ceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 302 DNRELASGGNDNRLFVWNQHST-Q----------PVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 302 d~~~lasg~~Dg~v~iwd~~~~-~----------~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
..+.+.-..||.|+.|-.... + ....+. .....|..++........++.. .|+.|..|-....-
T Consensus 168 -~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~---~~G~v~~wG~n~~G 243 (389)
T 3kci_A 168 -GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT---DDDTVWSWGDGDYG 243 (389)
T ss_dssp -SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---TTTEEEEEECCGGG
T ss_pred -cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc---cCCEEEEEeCCCCC
Confidence 446666678899999975321 1 011111 1234566676654222333333 68999999644211
Q ss_pred e-----------eeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------eeEEEcC-CCccE
Q 011971 370 H-----------LSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS-----------KLATLTG-HTFRV 424 (474)
Q Consensus 370 ~-----------~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-----------~~~~l~~-h~~~V 424 (474)
. ...+. ....|..++........+ ..+|.|+.|-....- ....+.. ....|
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~al----t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v 319 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL----TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKV 319 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEE----ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEE----eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCE
Confidence 1 11111 122355555443332222 278999999764211 1111121 12357
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 425 LYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 425 ~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
..++... .+.+....||.|+.|=...
T Consensus 320 ~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 320 IAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred EEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 7777643 3555567899999997654
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.49 E-value=8.5 Score=35.44 Aligned_cols=238 Identities=15% Similarity=0.143 Sum_probs=124.0
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
+..++-.....++.. ++.|+.|-....-...+ .......|..|+.... ..++. . ||.|..|-......+..-..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 455555666666776 99999997654221111 1111235666665432 23333 4 899999865432111111111
Q ss_pred CCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 011971 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~ 329 (474)
...|..++......+.-. ||.|+.|-.....++-. .......|..++...+. .+.-. ||.|+.|-......+-.-
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCc
Confidence 346888888776666667 99999997655432211 11123457777654332 22233 799999976542211111
Q ss_pred ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-eeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL-SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
..-...|..|+.-.+. .++. . |+.|..|-....-.+ ........|..++-... ..++. . +|.|..|-.
T Consensus 176 ~~~~~~v~~i~~G~~h--s~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al--~--~g~v~~wG~ 244 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIFH--SLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL--K--NGKVIAWGS 244 (282)
T ss_dssp GGGGSSEEEEEECSSE--EEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE--E--TTEEEEEST
T ss_pred eecCCCeEEEEecCCE--EEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEE--E--CCEEEEecC
Confidence 1113456666665442 2332 2 788888865442221 11122234555553322 22332 2 888998876
Q ss_pred CCCceeEEEcCCCccEEEEEECCC
Q 011971 409 PTMSKLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spd 432 (474)
....++.. ...|..++....
T Consensus 245 n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 245 SRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp TCCCCGGG----SSCEEEEEECSS
T ss_pred CCCccccC----CCCcEEEEECcC
Confidence 65433221 235666666544
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.48 E-value=10 Score=36.45 Aligned_cols=260 Identities=7% Similarity=-0.028 Sum_probs=122.3
Q ss_pred EEEEEcCCeEEEEeCCC--CCEEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCC----cEEEecCCCCeEEEEecC----
Q 011971 180 VLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHG----KVQIWDASRCKRVRTMEG---- 248 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~--~~~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg----~I~iwd~~~~~~~~~~~~---- 248 (474)
.|.++....+++++... ..............|.+|++.| +...|.+++..| .|...+ ..++.-..+..
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccC
Confidence 34444444577766543 2333321112346799999998 333455555555 344332 22222222211
Q ss_pred ----------CCCcEEEEEec----CCEEEEEeCCCcEEEEECcCCcceEee--ec----------------CcCCCEEE
Q 011971 249 ----------HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSK--LS----------------GHKSEVCG 296 (474)
Q Consensus 249 ----------h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~----------------~h~~~V~~ 296 (474)
+...|.++++. ++.|.++...+.|...+-. +...... .. .....|.+
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~ 181 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS 181 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence 11357788885 5677777766666554322 1211111 10 11235789
Q ss_pred EEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEcc-----C--------CCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 297 LKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCE-----H--------TAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 297 l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~-----h--------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
|.++|. ...|..+..++.|+..+- .++.-..+.. + ...+.+|+++|.....+..+. .+.|..
T Consensus 182 i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl~~ 257 (394)
T 3b7f_A 182 ILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGIYR 257 (394)
T ss_dssp EEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEEEE
T ss_pred EEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeEEE
Confidence 999873 445555554454544432 2222222211 0 134889999997443444442 344544
Q ss_pred EECCCCceeeeecC--C----CCeEEEEEcCC-CCeEEEEEec---------CCCeEEEEECCC-CceeEEEc-CCC--c
Q 011971 363 WNTTTNTHLSCMDT--G----SQVCNLVWSKN-VNELVSTHGY---------SQNQIIVWRYPT-MSKLATLT-GHT--F 422 (474)
Q Consensus 363 wd~~~~~~~~~~~~--~----~~v~~l~~s~~-~~~l~~~~g~---------~dg~I~iwd~~~-~~~~~~l~-~h~--~ 422 (474)
.+ ..++....+.. . ..+..+.++|. ...+++.+.. .++...||.... ++.-..+. +-. .
T Consensus 258 s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~ 336 (394)
T 3b7f_A 258 MD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQ 336 (394)
T ss_dssp EE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSS
T ss_pred eC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCcc
Confidence 43 22333333321 1 23567888763 3445543211 123345555443 22222221 111 0
Q ss_pred ---c--EEEEEECCC-CCEEEEEeCCCcEE
Q 011971 423 ---R--VLYLAISPD-GQTIVTGAGDETLR 446 (474)
Q Consensus 423 ---~--V~~l~~spd-g~~l~t~s~Dg~I~ 446 (474)
. ...++++|. ...|+.++.++.|.
T Consensus 337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred ccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 1 135788874 34566676666654
No 353
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.85 E-value=16 Score=33.45 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=96.3
Q ss_pred CCCcceeeeeCCC-CcEEEEEcCCeEEEE---eCCCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC
Q 011971 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLW---NACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 165 ~~d~~v~~l~~s~-~~~la~~~d~~V~lw---d~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~ 239 (474)
..|.....+.-+. +.++.....|.+|-- ++..+.... + +...+.|..+.... +..+++..+.+|.|+-..+..
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 5666666666655 788888988877754 333222212 3 55567788775521 467899999999999887644
Q ss_pred C------eEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcc--------eEeeecCcCCCEEEEEEecCCC
Q 011971 240 C------KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED--------FVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 240 ~------~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spd~~ 304 (474)
. .....+.....-+.....+ .+.++..+..|.++.+....-.. ....+. ....|.++....++.
T Consensus 100 ~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 100 FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEP 178 (276)
T ss_dssp TTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCS
T ss_pred hhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCC
Confidence 2 2222233333333333333 46788999999988887543111 111122 235677766666677
Q ss_pred EEEEEeCCCcEEEEECC
Q 011971 305 ELASGGNDNRLFVWNQH 321 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~ 321 (474)
.++..+..|.++...+.
T Consensus 179 ~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 179 YLLVITAKGRVKKISHE 195 (276)
T ss_dssp EEEEEETTSCEEEEEGG
T ss_pred EEEEEeCCCcEEEeEHH
Confidence 88999999999988864
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.69 E-value=27 Score=34.70 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=120.6
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCC---eEEEEec---------CCCCcEEEEEecCC-----EEEEE-eC-
Q 011971 209 DSVCSVGWANRNT-HLAVGTSHGKVQIWDASRC---KRVRTME---------GHRLRVGALAWSSS-----LLSSG-SR- 268 (474)
Q Consensus 209 ~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~---~~~~~~~---------~h~~~V~~l~~~~~-----~l~sg-s~- 268 (474)
.....|+|.|+|. .|+++...|.|++++.... ..+..+. ........|+++++ .|+.. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4668999999996 5666788999999975422 1222222 11456788999874 33332 21
Q ss_pred -C----------CcEEEEECcCC---------cceEeeec--CcCCCEEEEEEecCCCEEEEEeCCC-------------
Q 011971 269 -D----------KSILQRDIRAQ---------EDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDN------------- 313 (474)
Q Consensus 269 -d----------g~I~iwd~~~~---------~~~~~~~~--~h~~~V~~l~~spd~~~lasg~~Dg------------- 313 (474)
+ ..|.-|.+... .+.+..+. ........|.|.|||.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444555321 11222221 1223468899999998877766532
Q ss_pred ----cEEEEECCCC---------------------cceEEEccCCCcEEEEEECCC-----CC-cEEEEec-CCCC-CeE
Q 011971 314 ----RLFVWNQHST---------------------QPVLKYCEHTAAVKAIAWSPH-----LH-GLLASGG-GTAD-RCI 360 (474)
Q Consensus 314 ----~v~iwd~~~~---------------------~~~~~~~~h~~~V~~l~~sp~-----~~-~ll~sg~-Gt~d-~~I 360 (474)
.|.-.|.... ..+... +|.. ...++|+|. |. .++++-. | .+ ..-
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~-G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G-~~~~~~ 250 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH-GLHD-PGRCAVDRHPTDININLTILCSDSNG-KNRSSA 250 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE-CCSS-CCBEEEESSCSSTTCSEEEEEECC-------CE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE-CCCC-cceEEECCCCCCcccceEEEecccCC-CCCCCC
Confidence 2444444331 012222 4443 357899987 22 2333211 1 11 112
Q ss_pred EEEECCCC------ceeeeecCC--CCeEEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCc---eeEEE-c---
Q 011971 361 RFWNTTTN------THLSCMDTG--SQVCNLVWSKN-------VNELVSTHGYSQNQIIVWRYPTMS---KLATL-T--- 418 (474)
Q Consensus 361 ~iwd~~~~------~~~~~~~~~--~~v~~l~~s~~-------~~~l~~~~g~~dg~I~iwd~~~~~---~~~~l-~--- 418 (474)
.|..+..+ ..+..+.+. ..+..+.|-.. +.+|+. ... +.|....+.... ....+ .
T Consensus 251 ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~--~~~-g~i~~~~~~~~~~~~~~~~~~~g~~ 327 (463)
T 2wg3_C 251 RILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG--DRN-GNFLTLQQSPVTKQWQEKPLCLGTS 327 (463)
T ss_dssp EEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE--ETT-SCEEEEEC-----CCEEEEECEEET
T ss_pred eEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe--cCC-CcEEEEEeCCCCceeeEEEeecCCc
Confidence 23333222 234444433 46777877532 334554 223 666655554321 11122 1
Q ss_pred -----CCCccEEEEEECCCCCEEEEEeCC-----CcEEEEeCC
Q 011971 419 -----GHTFRVLYLAISPDGQTIVTGAGD-----ETLRFWNVF 451 (474)
Q Consensus 419 -----~h~~~V~~l~~spdg~~l~t~s~D-----g~I~iW~l~ 451 (474)
....++..+++.|||.++++.... ..=+||.|.
T Consensus 328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 328 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp TSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred ccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 123679999999999987776521 233567776
No 355
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=85.11 E-value=29 Score=33.67 Aligned_cols=229 Identities=10% Similarity=0.026 Sum_probs=120.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-------------eEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEE
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-------------KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQR 275 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~-------------~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iw 275 (474)
..|..|+. .+.+.++-..||.|..|=.... .....+. ....|..++......+.-..||.|+.|
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEE
Confidence 45655554 3556677778999999954321 0111111 234677888777777888899999999
Q ss_pred EC--cCCcce---------EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------------
Q 011971 276 DI--RAQEDF---------VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--------------------- 323 (474)
Q Consensus 276 d~--~~~~~~---------~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~--------------------- 323 (474)
-. ....++ ..........|..|+.. ..+.+.-..||.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 222110 11111123456666653 345666678899999964321
Q ss_pred --cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-----------eeec-CCCCeEEEEEcCCC
Q 011971 324 --QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL-----------SCMD-TGSQVCNLVWSKNV 389 (474)
Q Consensus 324 --~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~-----------~~~~-~~~~v~~l~~s~~~ 389 (474)
.+..........|..++.... ..++.- +.++.|..|-....-.+ .... ....|..++.....
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~--~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~h 305 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY--CTFMRE--SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHH 305 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT--EEEEEE--TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSE
T ss_pred ccCCeEEeecCCccEEEEEECCc--EEEEEE--CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCe
Confidence 111111112234555554432 122221 16888888864331111 0000 12345555433322
Q ss_pred CeEEEEEecCCCeEEEEECCCC------------ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 390 NELVSTHGYSQNQIIVWRYPTM------------SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.++ -..+|.|+.|-.... .....+..-...|..|+.... +.+.-..||.|+.|=...
T Consensus 306 --t~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 306 --TVI--LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp --EEE--EETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred --EEE--EeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 222 227889999975321 112222222336777777543 444457899999997654
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.07 E-value=45 Score=35.07 Aligned_cols=228 Identities=9% Similarity=0.049 Sum_probs=116.2
Q ss_pred EcCCCCEEEEEeCC-----CcEEEecCCCCeEEEE-ecCCCC--------cEEEEEec-CCEEEEEe-----------CC
Q 011971 216 WANRNTHLAVGTSH-----GKVQIWDASRCKRVRT-MEGHRL--------RVGALAWS-SSLLSSGS-----------RD 269 (474)
Q Consensus 216 ~sp~g~~la~gs~d-----g~I~iwd~~~~~~~~~-~~~h~~--------~V~~l~~~-~~~l~sgs-----------~d 269 (474)
++|++++++.+-+. ..|+++|+++++.+.. +. ... ....++|. .+.++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 67888877765432 3699999999987631 11 100 11344775 34554442 22
Q ss_pred CcEEEEECcCCcc-eEeeecCcCCC-EEEEEEecCCCE-----EEEEeC---CCcEEEEECCC--CcceEEEccCCCcEE
Q 011971 270 KSILQRDIRAQED-FVSKLSGHKSE-VCGLKWSYDNRE-----LASGGN---DNRLFVWNQHS--TQPVLKYCEHTAAVK 337 (474)
Q Consensus 270 g~I~iwd~~~~~~-~~~~~~~h~~~-V~~l~~spd~~~-----lasg~~---Dg~v~iwd~~~--~~~~~~~~~h~~~V~ 337 (474)
..|+.|.+-+... -...+.+.... -.+...+.++++ +++.+. ...+++.|... ++ ...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCcc--
Confidence 4688888766531 12233333333 234555666662 444432 24577777653 32 2333222221
Q ss_pred EEEECCCCCcEEEEecC--------CCCCeEEEEECCCCc-------eeee-ecC--CCCeEEEEEcCCCCeEEEEEecC
Q 011971 338 AIAWSPHLHGLLASGGG--------TADRCIRFWNTTTNT-------HLSC-MDT--GSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~G--------t~d~~I~iwd~~~~~-------~~~~-~~~--~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
.+..+..+. +++.... ...+.|...|+.++. .... +.. ...+..+.|..+ ..+++ ...
T Consensus 293 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~--~~~ 368 (711)
T 4hvt_A 293 TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA--TYD 368 (711)
T ss_dssp EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE--EEE
T ss_pred eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE--EEE
Confidence 123334443 4442210 135678889887642 1222 332 334777888876 33333 334
Q ss_pred CC--eEEEEECCCCc-eeEE-EcCC-CccEEEEEECCCCC-EEEEEeC---CCcEEEEeCC
Q 011971 400 QN--QIIVWRYPTMS-KLAT-LTGH-TFRVLYLAISPDGQ-TIVTGAG---DETLRFWNVF 451 (474)
Q Consensus 400 dg--~I~iwd~~~~~-~~~~-l~~h-~~~V~~l~~spdg~-~l~t~s~---Dg~I~iW~l~ 451 (474)
++ .|.++++.++. .+.. +... .+.|..+.+++++. ++++.+. -+.+..+++.
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 44 57777776654 2222 2211 24566666777765 4444443 2567777765
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=83.53 E-value=32 Score=32.97 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=128.0
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCC---------CE--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS---------KV--TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~---------~~--~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
+..++-.....++...++.|+.|-.... .. ...+..-....+..++.+....+.++-+.+|.|..|-..
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 4445545567788888999999964321 11 111111123356667777777777778889999999532
Q ss_pred C-----------CeEEEEecC-CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce----------Eeeec-CcCCCEE
Q 011971 239 R-----------CKRVRTMEG-HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF----------VSKLS-GHKSEVC 295 (474)
Q Consensus 239 ~-----------~~~~~~~~~-h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~-~h~~~V~ 295 (474)
. ......+.. ....|..++......+.-..+|.|+.|-.....++ ...+. .....|.
T Consensus 135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 1 112222222 23368888887788888889999999965432110 01111 1223566
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC-c----------ceEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 296 GLKWSYDNRELASGGNDNRLFVWNQHST-Q----------PVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 296 ~l~~spd~~~lasg~~Dg~v~iwd~~~~-~----------~~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
.++......+.+.-..||.|+.|-.... + ....+.. ....|..|+.-.. ..++++ .||.|..|
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt----~~G~v~~w 289 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALT----KSGAVYTW 289 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEE----TTSCEEEE
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEe----CCCeEEEE
Confidence 6665443456667778999999975321 1 1111111 2224666665443 223332 68999999
Q ss_pred ECCCCce-----------eeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 364 NTTTNTH-----------LSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 364 d~~~~~~-----------~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
-....-. ...+. ....|..++..... .++ -..+|.|+.|-...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h--~~a--l~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH--CVC--CTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE--EEE--EETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe--EEE--ECCCCCEEEeeCCC
Confidence 6542110 01111 12345555543332 222 23788999998654
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.57 E-value=35 Score=33.85 Aligned_cols=105 Identities=9% Similarity=0.056 Sum_probs=61.3
Q ss_pred CcEEEEEECCCCC-cEEEEecCCCCCeEEEEECCCCc---eeeeec----C------CCCeEEEEEcCC---CCeEEEEE
Q 011971 334 AAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNT---HLSCMD----T------GSQVCNLVWSKN---VNELVSTH 396 (474)
Q Consensus 334 ~~V~~l~~sp~~~-~ll~sg~Gt~d~~I~iwd~~~~~---~~~~~~----~------~~~v~~l~~s~~---~~~l~~~~ 396 (474)
.....|+|.|++. .++++- ..|.|++++..... .+..+. . ......|+|+|+ ..+|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 4567899999986 577765 68999999754321 122221 1 345788999996 34455432
Q ss_pred ecC-C----------CeEEEEECCC----------CceeEEEc--CCCccEEEEEECCCCCEEEEEeC
Q 011971 397 GYS-Q----------NQIIVWRYPT----------MSKLATLT--GHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 397 g~~-d----------g~I~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
... + ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+.
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 221 1 2455566542 12333332 11223578999999986666554
No 359
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=81.73 E-value=0.72 Score=25.17 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=9.3
Q ss_pred CCCcccCCCCCC
Q 011971 45 YSDRFIPSRSSS 56 (474)
Q Consensus 45 ~~dr~ip~~~~~ 56 (474)
..++|||+|-+-
T Consensus 4 ~~eKFiPsRPAP 15 (26)
T 2rqw_B 4 ANGKFIPSRPAP 15 (26)
T ss_dssp CCCSSCCSSCCC
T ss_pred cccccccCCCCC
Confidence 348999999863
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.13 E-value=79 Score=34.53 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=51.0
Q ss_pred cEEEEEecCCEEEEEeCCCcEEEEECcCCcc--------------eEeee------cC---cCCCEEEEEEecCCCEEEE
Q 011971 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQED--------------FVSKL------SG---HKSEVCGLKWSYDNRELAS 308 (474)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--------------~~~~~------~~---h~~~V~~l~~spd~~~las 308 (474)
+..-.+.+++.++.+-.||.+.-.+-+.... .+..+ .. -...+.++...++..++++
T Consensus 173 p~~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lft 252 (950)
T 4gq2_M 173 PDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYNVLVM 252 (950)
T ss_dssp EEEEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCcEEEE
Confidence 3444455677888888888775543221110 00000 01 1124677788888899999
Q ss_pred EeCCCcEEEEECCCCcceEEE
Q 011971 309 GGNDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 309 g~~Dg~v~iwd~~~~~~~~~~ 329 (474)
-+.|+++++|++.+++++.+.
T Consensus 253 l~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 253 LSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EETTCEEEEEETTTTEEEEEE
T ss_pred EECCCEEEEEECCCCCeEeee
Confidence 999999999999999887765
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.34 E-value=48 Score=31.10 Aligned_cols=155 Identities=14% Similarity=0.037 Sum_probs=96.3
Q ss_pred CCcceeeeeCCC-CcEEEEEcCCeEEEEe---CCCC----CEEE---EEecCCCCCEEEEEEcC---CCCEEEEEeCCCc
Q 011971 166 DDFYLNLVDWSS-HNVLAVGLGNCVYLWN---ACSS----KVTK---LCDLGIDDSVCSVGWAN---RNTHLAVGTSHGK 231 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~~d~~V~lwd---~~~~----~~~~---~~~~~~~~~V~~v~~sp---~g~~la~gs~dg~ 231 (474)
+|+....+.-+. +.++.....|.+|... +... +-.. ++.+.....|.++..-+ +..+++..+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 566555555555 7788888888776554 3322 1122 23344566777765544 4779999999999
Q ss_pred EEEecCCC-------CeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECc--CCcc--------eEeeecCcCCC
Q 011971 232 VQIWDASR-------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIR--AQED--------FVSKLSGHKSE 293 (474)
Q Consensus 232 I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~--~~~~--------~~~~~~~h~~~ 293 (474)
|+--.+.. +.....+.....-+.....+ .+.|+..+..|.+..+.+. .-.. ....+ .....
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~ 199 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDR 199 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCC
T ss_pred EEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCE
Confidence 99876543 22222333434444443333 4788889999999888776 2110 01112 23456
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 294 VCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
|.++...+++..|+..+..|.++.-.+.
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 7777776667789999999999988764
No 362
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=75.38 E-value=60 Score=31.25 Aligned_cols=268 Identities=10% Similarity=0.118 Sum_probs=141.4
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCC-C--------EEEEEec--CCCCCEEEEEEcCCCCEEEEEeCC-CcEEEecC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-K--------VTKLCDL--GIDDSVCSVGWANRNTHLAVGTSH-GKVQIWDA 237 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~-~--------~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~d-g~I~iwd~ 237 (474)
+..++-.....++...++.|+.|-.... + ......+ -....|..|+.- +.+.++-..+ +.|..|-.
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEEEEC
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEEEcC
Confidence 6667777778888889999999965431 1 1111111 113357766654 3344434445 58999843
Q ss_pred CCC-----------eEEEEecC-CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce----------EeeecC-cCCCE
Q 011971 238 SRC-----------KRVRTMEG-HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF----------VSKLSG-HKSEV 294 (474)
Q Consensus 238 ~~~-----------~~~~~~~~-h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~~-h~~~V 294 (474)
... .....+.. ....|..++......+.-..+|.|+.|-.....++ ...+.. ....|
T Consensus 96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 175 (406)
T 4d9s_A 96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI 175 (406)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Confidence 211 11112222 33468888887788888889999999975432210 111111 12256
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCC-c---------c-eEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQHST-Q---------P-VLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~---------~-~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
..++.. ..+.+.-..||.|+.|-.... + . ...+.. ....|..++.-.. ..++++ .++.|..
T Consensus 176 ~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~----~~G~v~~ 248 (406)
T 4d9s_A 176 KMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVS----YSGALYT 248 (406)
T ss_dssp EEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEE----TTCCEEE
T ss_pred EEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEc----CCCCEEE
Confidence 666543 345666678999999964321 1 0 111111 1235666655433 223332 6888988
Q ss_pred EECCCCcee-----------eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-----------eEEEc
Q 011971 363 WNTTTNTHL-----------SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK-----------LATLT 418 (474)
Q Consensus 363 wd~~~~~~~-----------~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-----------~~~l~ 418 (474)
|-....-.+ ..+. ....|..++-... +.++ -..+|.|+.|-....-. ...+.
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR--HTMA--LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEE--EETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC--EEEE--EcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 865432111 1111 1233555544322 2222 23788899987543111 11111
Q ss_pred -CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 419 -GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 419 -~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.....|..++... .+.+.-..||.|+.|=-..
T Consensus 325 ~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 325 FPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CGGGCCEEEEEECS--SEEEEEETTSCEEEEECCT
T ss_pred ccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCCC
Confidence 1234577777643 3555567899999997543
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.55 E-value=23 Score=38.73 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
..+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357788888888899999999999999999999988753
No 364
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.55 E-value=68 Score=29.75 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=123.2
Q ss_pred cCCCCEEEEEeCCCcEEEecCCCCe-------EEE--EecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcc----
Q 011971 217 ANRNTHLAVGTSHGKVQIWDASRCK-------RVR--TMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED---- 282 (474)
Q Consensus 217 sp~g~~la~gs~dg~I~iwd~~~~~-------~~~--~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~---- 282 (474)
-++..++++.+.+|.|+--.+..-+ -+. .+.....-+..+..+ .+.++..+..|.++-.....-..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3456678888999998877543221 111 123333333333333 47888889999887776542110
Q ss_pred ----e---EeeecCcCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCC-------CcceEEEccCCCcEEEEEECCCC
Q 011971 283 ----F---VSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHS-------TQPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 283 ----~---~~~~~~h~~~V~~l~~sp---d~~~lasg~~Dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
. ...+. ....|.++...+ +..+|+..+..|.++...+.. +.....+.. ...+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 0 01122 224455554433 467888999999999988743 222333433 4455555444333
Q ss_pred CcEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---
Q 011971 346 HGLLASGGGTADRCIRFWNTTT---------NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK--- 413 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--- 413 (474)
..+++.. .+|.+..+.... |.....+..+..|..+....++..+++ .+..|......+.....
T Consensus 163 ~~i~l~T---~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~--vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 163 EKVICLS---KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLI--VSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp CEEEEEE---TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEE--EETTSEEEEEEGGGSCBCCT
T ss_pred CEEEEEe---CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEE--EECCCceEEEEHHHhcccCC
Confidence 4455443 688888877643 222223334566777766656666666 45788888887743211
Q ss_pred ----eEEE--c-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 414 ----LATL--T-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 414 ----~~~l--~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+..+ . .....+..+....+...|+..+..|.+.-..+..
T Consensus 238 ~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 238 GATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 1112 1 2234454443333445566666777654455544
No 365
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=70.14 E-value=80 Score=30.37 Aligned_cols=224 Identities=10% Similarity=0.074 Sum_probs=121.6
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCC-C------------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-K------------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~-~------------~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
+..++-.....++...++.|+.|-.... + ....+ .....|..|+.. ..+.++-+.+|.|..|-
T Consensus 61 i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v--~l~~~i~~va~G--~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV--ELQEKVVQVSAG--DSHTAALTDDGRVFLWG 136 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC--CCCSCEEEEEEC--SSEEEEEETTSCEEEEE
T ss_pred eEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe--cCCCcEEEEecC--CCeEEEEcCCCcEEEee
Confidence 6666666677888889999999975431 1 01111 123466666553 34566667788999886
Q ss_pred C--CC-CeE-----------EEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceE------------------
Q 011971 237 A--SR-CKR-----------VRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV------------------ 284 (474)
Q Consensus 237 ~--~~-~~~-----------~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~------------------ 284 (474)
. .. +++ ...+ .....|..++......+.-..||.|+.|-.....++-
T Consensus 137 ~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 215 (413)
T 1a12_A 137 SFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL 215 (413)
T ss_dssp CEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHH
T ss_pred CCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccc
Confidence 4 21 110 1111 2345677888777788888899999999654322110
Q ss_pred -----eeecC----cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-------c---eEEEccC---CCcEEEEEE
Q 011971 285 -----SKLSG----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-Q-------P---VLKYCEH---TAAVKAIAW 341 (474)
Q Consensus 285 -----~~~~~----h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~-------~---~~~~~~h---~~~V~~l~~ 341 (474)
..+.. ....|..|+...+ +.+.-..||.|+.|-.... + . ...+..- ...|..|+-
T Consensus 216 ~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~ 293 (413)
T 1a12_A 216 LVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293 (413)
T ss_dssp HSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE
T ss_pred ccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec
Confidence 00100 2245666665433 4444568899999976431 1 0 1111111 134666665
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCc------------eeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNT------------HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~------------~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
-.+ ..++++ .||.|..|-....- .-..+..-..|..++.... ..++ -..+|.|+.|-..
T Consensus 294 G~~-hs~al~----~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~--hs~a--lt~~G~v~~wG~n 364 (413)
T 1a12_A 294 GQH-HTVCMD----SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGAS--VGYA--VTKDGRVFAWGMG 364 (413)
T ss_dssp CSS-EEEEEE----TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSS--EEEE--EETTSCEEEEECC
T ss_pred ccc-eEEEEe----CCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcc--eEEE--EeCCCCEEEecCC
Confidence 443 223332 68999999653210 0111112225555554433 2222 2278899999764
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.92 E-value=97 Score=34.57 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=30.9
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc
Q 011971 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC 330 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~ 330 (474)
+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666788899999999999999999998887753
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.71 E-value=20 Score=40.14 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
.+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999999988754
No 368
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=67.07 E-value=93 Score=29.96 Aligned_cols=229 Identities=8% Similarity=0.042 Sum_probs=121.8
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCC-C----------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC-
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-K----------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA- 237 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~-~----------~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~- 237 (474)
+..|+-.....++...+|.|+.|-.... + ...-..+.....|..|+.. ..+.++-+.+|.|..|-.
T Consensus 77 v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEEECE
T ss_pred ceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCC
Confidence 4566667778889999999999965321 1 0000111223456666553 345566678899999974
Q ss_pred -CC-CeE---------EEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcc----------------------eE
Q 011971 238 -SR-CKR---------VRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED----------------------FV 284 (474)
Q Consensus 238 -~~-~~~---------~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~----------------------~~ 284 (474)
.. +++ ..........|..++......+.-..+|.|+.|-.....+ +.
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~ 234 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCE
T ss_pred CCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCe
Confidence 21 221 1111123456888888778888888999999996433211 11
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------ceEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-----------PVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-----------~~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
.........|..++... ...++.-..+|.|+.|-..... ...........|..|+.-.. ..++++
T Consensus 235 ~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~-ht~alt-- 310 (423)
T 3mvd_K 235 QLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH-HTVILT-- 310 (423)
T ss_dssp EECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS-EEEEEE--
T ss_pred EEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC-eEEEEe--
Confidence 11111223455555432 2223333578899998643210 00111111345666665443 223332
Q ss_pred CCCCCeEEEEECCCC------c------eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 354 GTADRCIRFWNTTTN------T------HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 354 Gt~d~~I~iwd~~~~------~------~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
.||.|..|-.... . ....+. ....|..++.......++ ..+|.|+.|-...
T Consensus 311 --~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~al----t~~G~v~~wG~n~ 374 (423)
T 3mvd_K 311 --TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAV----TIDGKLYSWGSGV 374 (423)
T ss_dssp --TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEE----ETTSCEEEEECCT
T ss_pred --CCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEE----cCCCCEEEECCCC
Confidence 6899999964321 0 011111 122566665544333222 2789999997654
No 369
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.48 E-value=86 Score=29.34 Aligned_cols=188 Identities=9% Similarity=-0.014 Sum_probs=106.3
Q ss_pred CCEEEEEeCCCcEEEEE---CcCCc-----ceEeee-c-CcCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCC---
Q 011971 260 SSLLSSGSRDKSILQRD---IRAQE-----DFVSKL-S-GHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHST--- 323 (474)
Q Consensus 260 ~~~l~sgs~dg~I~iwd---~~~~~-----~~~~~~-~-~h~~~V~~l~~sp---d~~~lasg~~Dg~v~iwd~~~~--- 323 (474)
.+.|+.-+..|.++... +.... ..+..+ . .....|.++..-. +..+++..+.+|.++...+...
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 46777777777766554 32211 111111 1 1234566654433 5779999999999999886542
Q ss_pred ----cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC--C---------CceeeeecCCCCeEEEEEcCC
Q 011971 324 ----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--T---------NTHLSCMDTGSQVCNLVWSKN 388 (474)
Q Consensus 324 ----~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~--~---------~~~~~~~~~~~~v~~l~~s~~ 388 (474)
.....+... ..+..+........+++.. ..|.+..+... . |.....+..+..|..+...+.
T Consensus 133 ~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T---~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~ 208 (327)
T 3uc1_A 133 RSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVS---ANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE 208 (327)
T ss_dssp CSSCEESCBCCTT-CCEEEEEEECTTCEEEEEE---TTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT
T ss_pred ccCceEEEEECCC-CEEEEEEEecCCCEEEEEE---CCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC
Confidence 222234343 3444444443344455544 57887777765 2 222223445667888777776
Q ss_pred CCeEEEEEecCCCeEEEEECCCCce-------eEEE--cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMSK-------LATL--TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~~-------~~~l--~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.++++ .+..|.++.-.+..... +..+ ..-.+.+..+....+...|+..+.+|.+.-+++..-
T Consensus 209 ~~~ll~--~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 209 GTYLLV--ATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp TCEEEE--EETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred CCEEEE--EeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 777777 45888888877543221 2222 221344555554444556777788888877876653
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=65.48 E-value=85 Score=28.97 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=92.2
Q ss_pred CCCcceeeeeCCC-CcEEEEEcCCeEEEEeCC---CC----CEE---EEEecCCCCCEEEEEEc---CCCCEEEEEeCCC
Q 011971 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNAC---SS----KVT---KLCDLGIDDSVCSVGWA---NRNTHLAVGTSHG 230 (474)
Q Consensus 165 ~~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~---~~----~~~---~~~~~~~~~~V~~v~~s---p~g~~la~gs~dg 230 (474)
.+|+.+..+.-+. +.++..+..|.++-.... .. .-. ..+.+...+.|.++... .++.+++..+.+|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G 119 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 119 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 3455555444444 788888988987766542 21 112 12234455677777543 3466899999999
Q ss_pred cEEEecCCC-------CeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcc------eE--eeecCcCCCE
Q 011971 231 KVQIWDASR-------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED------FV--SKLSGHKSEV 294 (474)
Q Consensus 231 ~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~------~~--~~~~~h~~~V 294 (474)
.++--.+.. +.....+..+..-|.....+ .+.++..+.+|.+..+....-.. -+ ..+. ....|
T Consensus 120 ~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~V 198 (307)
T 1zi0_A 120 TVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKV 198 (307)
T ss_dssp EEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred eEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEE
Confidence 998876531 22222233443333333334 46788899999988887643210 01 1122 23567
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.++....++..+++.+..|.++-.++.
T Consensus 199 v~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 199 VSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 777655556678888999998888763
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.82 E-value=90 Score=28.33 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=91.4
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCc------ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 291 KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQ------PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 291 ~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~------~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
...|..+.... +...++..+.+|.++...+.... ....+.. ...+..+........+++.. ..|.+..+
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T---~~G~~~r~ 142 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFT---KKGRVARF 142 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEE---TTSEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEE---CCCEEEEE
Confidence 34455554321 46789999999999998865432 1222322 34555555554444555544 57887777
Q ss_pred ECCC---------CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------ceeEEEcCCCccEEEE
Q 011971 364 NTTT---------NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-------SKLATLTGHTFRVLYL 427 (474)
Q Consensus 364 d~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l 427 (474)
+... |.....+..+..|..+....++..++. .+..|.++...+... +-+..+ ...+.+..+
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~--~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~ 219 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLV--ITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDL 219 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEE--EETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEE
T ss_pred EhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEE--EeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEE
Confidence 6432 222223445566777766666667777 457888888776422 122233 233455555
Q ss_pred EECCCCCEEEEEeCCCcEEE--EeCCCCC
Q 011971 428 AISPDGQTIVTGAGDETLRF--WNVFPSP 454 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~i--W~l~~~~ 454 (474)
....+...|+..+.+|.+.. +++..-+
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 44334456777788898888 8776544
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.29 E-value=1.1e+02 Score=28.36 Aligned_cols=187 Identities=9% Similarity=0.005 Sum_probs=111.2
Q ss_pred CCEEEEEeCCCcEEEEECcCCcce------E--eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---------
Q 011971 260 SSLLSSGSRDKSILQRDIRAQEDF------V--SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--------- 322 (474)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~------~--~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~--------- 322 (474)
...+++.+.+|.|+-..+..-... . ..+. ....+..+........++..++.|.++-+....
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 457888999999998876543211 1 1112 234455555555667888888999888776532
Q ss_pred Ccc---eEEEccCCCcEEEEEECC---CCCcEEEEecCCCCCeEEEEECCC-------CceeeeecCCCCeEEEEEcCCC
Q 011971 323 TQP---VLKYCEHTAAVKAIAWSP---HLHGLLASGGGTADRCIRFWNTTT-------NTHLSCMDTGSQVCNLVWSKNV 389 (474)
Q Consensus 323 ~~~---~~~~~~h~~~V~~l~~sp---~~~~ll~sg~Gt~d~~I~iwd~~~-------~~~~~~~~~~~~v~~l~~s~~~ 389 (474)
|.+ ...+.. ...|.++...+ +..+++... ..|.++-..+.. |.....+..+..+..+......
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T---~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTT---ASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEE---TTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEe---CCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 111 112222 23344443322 234454443 688888877632 3333334456677777766656
Q ss_pred CeEEEEEecCCCeEEEEECCCC---------ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 390 NELVSTHGYSQNQIIVWRYPTM---------SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..++. .+.+|.+..+..... .....+.. ...|..+..-.++..|++.+..|.++..++..-+
T Consensus 163 ~~i~l--~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~ 233 (312)
T 1suu_A 163 EKVIC--LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKIS 233 (312)
T ss_dssp CEEEE--EETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred CEEEE--EeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhc
Confidence 66766 458899988886432 12222322 4456777666666778889999999999886543
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.16 E-value=1.2e+02 Score=28.06 Aligned_cols=230 Identities=8% Similarity=0.005 Sum_probs=122.3
Q ss_pred CCCEEEEEeCCCcEEEecCCCCeEEE---------EecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECc---CCc----
Q 011971 219 RNTHLAVGTSHGKVQIWDASRCKRVR---------TMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIR---AQE---- 281 (474)
Q Consensus 219 ~g~~la~gs~dg~I~iwd~~~~~~~~---------~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~---~~~---- 281 (474)
+..++++.+.+|.|+--.+...+..+ .++.+..-+..+..+ .+.|+..+..|.++-+... ...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45677888889988766654322111 122333333333333 4778888888887666543 211
Q ss_pred -ceEe-eec-CcCCCEEEEEEe---cCCCEEEEEeCCCcEEEEECCC-------CcceEEEccCCCcEEEEEECCCCCcE
Q 011971 282 -DFVS-KLS-GHKSEVCGLKWS---YDNRELASGGNDNRLFVWNQHS-------TQPVLKYCEHTAAVKAIAWSPHLHGL 348 (474)
Q Consensus 282 -~~~~-~~~-~h~~~V~~l~~s---pd~~~lasg~~Dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~l 348 (474)
..+. .+. .....|.++..- .++.+++..+..|.++...+.. +.....+..+ ..+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 1111 111 233456666442 3556799999999999987642 2122233344 445444444333445
Q ss_pred EEEecCCCCCeEEEEECCC---------CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------
Q 011971 349 LASGGGTADRCIRFWNTTT---------NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS------- 412 (474)
Q Consensus 349 l~sg~Gt~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------- 412 (474)
++.. .+|.+..++... |...-.+..+..|..+....++..+++ .+..|.++-.++....
T Consensus 161 ~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~--~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 161 MLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT--ATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp EEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEE--EETTSEEEEECGGGSCCCCTTSC
T ss_pred EEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEE--EEcCCceEEEEHHHhccCCCCCC
Confidence 5543 577777776532 222223344566777765555566666 4578888877663211
Q ss_pred --eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 413 --KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 413 --~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
....+..-.+.+..+....+...|+..+.+|.+.-.++..-+
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i~ 279 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEIS 279 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGSC
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccccc
Confidence 111222233555555443444556677788888777776543
No 374
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=55.62 E-value=1.6e+02 Score=28.89 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCC-E-----E----------------------------EEEe---cC---C
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSK-V-----T----------------------------KLCD---LG---I 207 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~-~-----~----------------------------~~~~---~~---~ 207 (474)
..+..|+-.....++...+|.|+.|-....- + . ..+. +. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 3477777777888899999999999653210 0 0 0000 10 1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCC---CCe------------EEEEecC-CCCcEEEEEecCCEEEEEeCCCc
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDAS---RCK------------RVRTMEG-HRLRVGALAWSSSLLSSGSRDKS 271 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~---~~~------------~~~~~~~-h~~~V~~l~~~~~~l~sgs~dg~ 271 (474)
...|..|+.. ..+.++-+.+|.|..|-.. .++ ....+.. ....|..++......+.-..+|.
T Consensus 147 ~~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~ 224 (473)
T 3of7_A 147 GHKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM 224 (473)
T ss_dssp TCCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC
T ss_pred CCcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe
Confidence 2456666554 3455556778888888641 111 1111221 22358888887788888889999
Q ss_pred EEEEECcCCcceEe------------eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-----------ce-
Q 011971 272 ILQRDIRAQEDFVS------------KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-Q-----------PV- 326 (474)
Q Consensus 272 I~iwd~~~~~~~~~------------~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~-----------~~- 326 (474)
|+.|-.....++-. ...-....|..|+.- ..+.+.-..+|.|+.|-.... + ..
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred EEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 99996543221100 000011356666543 345555667899999964321 1 11
Q ss_pred --EEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 327 --LKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 327 --~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
..+.. ....|..|+.-.. ..++++ .+|.|..|-..
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~~-hs~~lt----~~G~v~~wG~n 340 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGEH-HSLILS----QDGDLYSCGRL 340 (473)
T ss_dssp EEEECCCCTTCCEEEEEECSS-EEEEEE----TTSCEEEEEEC
T ss_pred ccccccccCCccEEEEEeCCC-eEEEEe----CCCeEEEEECC
Confidence 11111 1235666665443 223332 68888888643
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.53 E-value=52 Score=33.71 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEE
Q 011971 378 SQVCNLVWSKNVNELVSTHGY----------SQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~----------~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~ 439 (474)
+..-+|.|++.|+.+++.-+. ..+.+.+.+..+++...-+.++ ...++.++|+||+++|+..
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346789999999977774332 1245666777777766666654 4679999999999988765
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.89 E-value=39 Score=34.47 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=41.9
Q ss_pred eeeeeCCC-CcEEEEEcC-------------CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 011971 170 LNLVDWSS-HNVLAVGLG-------------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT 227 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d-------------~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs 227 (474)
.+-|.+.+ ++|..+... +.|+.++..++++..++.......++.++|+||++.|++.-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45567777 555553322 26888888889988777533456799999999999888764
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=54.70 E-value=1.5e+02 Score=28.26 Aligned_cols=156 Identities=14% Similarity=0.016 Sum_probs=90.2
Q ss_pred CCcceeeeeCCC-CcEEEEEcCCeEEEEeCC---CC----CE---EEEEecCCCCCEEEEEEcC---CCCEEEEEeCCCc
Q 011971 166 DDFYLNLVDWSS-HNVLAVGLGNCVYLWNAC---SS----KV---TKLCDLGIDDSVCSVGWAN---RNTHLAVGTSHGK 231 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~---~~----~~---~~~~~~~~~~~V~~v~~sp---~g~~la~gs~dg~ 231 (474)
+|+.+..+.-+. +.++..+..|.++-+... .. +- ..++.+.....|.++.... ++.+|+.++..|.
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 124 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT 124 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 566555555555 678888888877766532 11 11 2223344566777765543 4568999999999
Q ss_pred EEEecCCC-------CeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcc------eEeee-cCcCCCEEE
Q 011971 232 VQIWDASR-------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED------FVSKL-SGHKSEVCG 296 (474)
Q Consensus 232 I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~------~~~~~-~~h~~~V~~ 296 (474)
++...+.. +.....+.....-|.....+ .+.++..+..|.+..+....-.. -+..+ ......|.+
T Consensus 125 vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~ 204 (370)
T 3l6v_A 125 VKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVS 204 (370)
T ss_dssp EEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEE
Confidence 98876532 22222233333334433334 46788889999988887543210 01111 112345555
Q ss_pred EEEec-----------------------------------CCCEEEEEeCCCcEEEEECC
Q 011971 297 LKWSY-----------------------------------DNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 297 l~~sp-----------------------------------d~~~lasg~~Dg~v~iwd~~ 321 (474)
+...+ ++..+++.+..|..+...+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 205 LIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp EEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 55444 44578888888988888764
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.45 E-value=1.4e+02 Score=27.82 Aligned_cols=156 Identities=9% Similarity=-0.037 Sum_probs=91.5
Q ss_pred CCCcceeeeeCCC-CcEEEEEcCCeEEEEeCC---CC----CEE---EEEecCCCCCEEEEEEcCC---CCEEEEEeCCC
Q 011971 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNAC---SS----KVT---KLCDLGIDDSVCSVGWANR---NTHLAVGTSHG 230 (474)
Q Consensus 165 ~~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~---~~----~~~---~~~~~~~~~~V~~v~~sp~---g~~la~gs~dg 230 (474)
.+|+.+..+.-+. +.++..+..|.++-.... .. .-. ..+.+...+.|.++...++ +.+|+..+.+|
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCC
Confidence 3466555554444 788888988987776542 11 111 2233444566776544332 56899999999
Q ss_pred cEEEecCCC--------CeEEEEecCCCCcEEEEE-ec-CCEEEEEeCCCcEEEEECcCCcc------eEeeec-CcCCC
Q 011971 231 KVQIWDASR--------CKRVRTMEGHRLRVGALA-WS-SSLLSSGSRDKSILQRDIRAQED------FVSKLS-GHKSE 293 (474)
Q Consensus 231 ~I~iwd~~~--------~~~~~~~~~h~~~V~~l~-~~-~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~-~h~~~ 293 (474)
.++.-.+.. +.....+... ..+..+. .+ .+.++..+.+|.+..+....-.. -+..+. .....
T Consensus 117 ~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~ 195 (323)
T 1wp5_A 117 MVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDY 195 (323)
T ss_dssp EEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCC
T ss_pred eEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCE
Confidence 999877631 2222223333 3333333 33 46788999999998887643110 111111 12345
Q ss_pred EEEEEEecCCC-EEEEEeCCCcEEEEECC
Q 011971 294 VCGLKWSYDNR-ELASGGNDNRLFVWNQH 321 (474)
Q Consensus 294 V~~l~~spd~~-~lasg~~Dg~v~iwd~~ 321 (474)
|.++...+++. .|++.+..|..+..++.
T Consensus 196 Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 196 IVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 66665545455 78888888888887764
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.68 E-value=60 Score=33.12 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEE
Q 011971 378 SQVCNLVWSKNVNELVSTHGY----------SQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~----------~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~ 439 (474)
.....|.|.++|...+++-+. ..+.|..++..+++....+.+. ...++.++|+||+++|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 457889999999888854221 1236777777677766555543 4578999999999988876
No 380
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=52.87 E-value=66 Score=28.91 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCCcceeeeeCCC-CcEEEEEcCCeEEEEeCC---CCC--EE---EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 011971 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNAC---SSK--VT---KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW 235 (474)
Q Consensus 165 ~~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~---~~~--~~---~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iw 235 (474)
.+|+.+..+.-+. +.++..+..|.++-.... .+. -. ..+.+...+.|.++....++.+|+.++..|.++..
T Consensus 31 e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~ 110 (256)
T 1zvt_A 31 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 110 (256)
T ss_dssp TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEe
Confidence 3566555554444 788888988987766542 211 11 23334556778888554566778899999999988
Q ss_pred cCCC-------CeEEEEecCCCCcEEEEEe-c-CCEEEEEeCCCcEEEEECcC
Q 011971 236 DASR-------CKRVRTMEGHRLRVGALAW-S-SSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 236 d~~~-------~~~~~~~~~h~~~V~~l~~-~-~~~l~sgs~dg~I~iwd~~~ 279 (474)
.+.. +.....+.....-|..... + .+.++..+.+|.+..+.+..
T Consensus 111 ~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 111 TFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 7632 3333334333333333333 2 46788899999988887753
No 381
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=51.86 E-value=1.8e+02 Score=28.45 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=98.2
Q ss_pred CcEEEEEecCCEEEEEeCCCcEEEEECcC--Cc-----------ce-EeeecC-cCCCEEEEEEecCCCEEEEEeCCCcE
Q 011971 251 LRVGALAWSSSLLSSGSRDKSILQRDIRA--QE-----------DF-VSKLSG-HKSEVCGLKWSYDNRELASGGNDNRL 315 (474)
Q Consensus 251 ~~V~~l~~~~~~l~sgs~dg~I~iwd~~~--~~-----------~~-~~~~~~-h~~~V~~l~~spd~~~lasg~~Dg~v 315 (474)
..|..++......+.-..+|.|+.|-... .. .. ...+.. ....|..|+.. ..+.+.-..+|.|
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCCeE
Confidence 56888888878888888999999997521 00 00 011111 12246666653 3466666789999
Q ss_pred EEEECCCC-cc--------------eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-c----------
Q 011971 316 FVWNQHST-QP--------------VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-T---------- 369 (474)
Q Consensus 316 ~iwd~~~~-~~--------------~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~---------- 369 (474)
+.|-.... +. ...+ ....|..|+.-.. ..++++ .+|.|..|-.... +
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~~-hs~alt----~~G~v~~wG~n~~GqlG~~~~~~~~ 298 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGEN-HCFALT----KDNKLVSWGLNQFGQCGVSEDVEDG 298 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECSS-EEEEEE----TTSCEEEEEECTTSTTCCCSCCCTT
T ss_pred EEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCCC-eEEEEe----cCCCEEEeCCCCCCCcCCCCcccCC
Confidence 99975431 10 0111 1135666665433 223332 6888999854321 1
Q ss_pred -ee---eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-------------------------eEEEc
Q 011971 370 -HL---SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK-------------------------LATLT 418 (474)
Q Consensus 370 -~~---~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-------------------------~~~l~ 418 (474)
.. ..+. ....|..++.......++ ..+|.|+.|-....-. ...+.
T Consensus 299 ~~~~~P~~v~~~~~~~i~~ia~G~~hs~~l----t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~ 374 (473)
T 3of7_A 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLIL----SQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN 374 (473)
T ss_dssp CEEEEEEECCCCTTCCEEEEEECSSEEEEE----ETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC
T ss_pred ceeeccccccccCCccEEEEEeCCCeEEEE----eCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC
Confidence 00 1111 123455555433322222 2678888887532110 01111
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 419 GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 419 ~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
....|..|+... .+.+.-..||.|+.|=...
T Consensus 375 -~~~~v~~Ia~G~--~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 375 -NVPKFKSVAAGS--HHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp -SSCCEEEEEECS--SEEEEEETTSCEEEEECCT
T ss_pred -CCCceEEEEeCC--CeEEEEeCCCcEEEeeCCC
Confidence 112577777643 3555567899999997654
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.21 E-value=37 Score=35.66 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=42.8
Q ss_pred CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCe--EEEEEcC---C-------CCeEEEEEecCCC
Q 011971 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV--CNLVWSK---N-------VNELVSTHGYSQN 401 (474)
Q Consensus 334 ~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v--~~l~~s~---~-------~~~l~~~~g~~dg 401 (474)
..|.++.+. ...+++.+ .|..+|+||+.+++++...+..... ..-...+ . +.++++-.-...|
T Consensus 222 ~~Is~~~~~--~~fLftL~---~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G 296 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLT---QNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENG 296 (729)
T ss_dssp CEEEEEEET--TTEEEEEE---TTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTC
T ss_pred ceEEEeccC--CcEEEEEE---cCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCC
Confidence 456655554 44555555 8999999999999988777642110 0000111 1 2455544445678
Q ss_pred eEEEEECC
Q 011971 402 QIIVWRYP 409 (474)
Q Consensus 402 ~I~iwd~~ 409 (474)
..++|++.
T Consensus 297 ~Fk~~~l~ 304 (729)
T 3f7f_A 297 LFQMGTLL 304 (729)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 99999874
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=49.34 E-value=2.3e+02 Score=28.80 Aligned_cols=246 Identities=13% Similarity=0.153 Sum_probs=133.7
Q ss_pred EEEEeCCCCCEEEEEecC-CCCCE---------------EEEEEcC-CCCEEEEEe---CCCcEEEecCCCCeEEEEe--
Q 011971 189 VYLWNACSSKVTKLCDLG-IDDSV---------------CSVGWAN-RNTHLAVGT---SHGKVQIWDASRCKRVRTM-- 246 (474)
Q Consensus 189 V~lwd~~~~~~~~~~~~~-~~~~V---------------~~v~~sp-~g~~la~gs---~dg~I~iwd~~~~~~~~~~-- 246 (474)
|.++|-.+|+........ ..+.+ .++++.- +...++.+- .-..|..||...+++....
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 789998888888776552 12222 2333321 112333332 1234788888777654332
Q ss_pred c-------------CCCCcEEEEEecC-CEEEEEe----CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC--CCEE
Q 011971 247 E-------------GHRLRVGALAWSS-SLLSSGS----RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NREL 306 (474)
Q Consensus 247 ~-------------~h~~~V~~l~~~~-~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l 306 (474)
. .|.-.|..+...+ .-|+.|+ .||++ +|.. -.+|...+..-.|.|+ |..+
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st---------~~gHGDa~hv~dldP~r~GlEv 380 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYST---------GLGHGDALHTGDLDPGRPGLEV 380 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEEC---------SCCCCSCEEEECCCTTSSSCEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeC---------CCCCCCeeEEeecCCCCCCcEE
Confidence 1 1555565555554 3444443 33333 3332 2378888888888887 4567
Q ss_pred EEEeCCC----cEEEEECCCCcceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCe
Q 011971 307 ASGGNDN----RLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380 (474)
Q Consensus 307 asg~~Dg----~v~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v 380 (474)
+.+.+++ -..+.|..+++.+..... +.+...+..|.|+...+=+-+. . .+|+.. |+.+........-
T Consensus 381 ~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~~----~--~l~~~~-G~~i~~~~p~~~N 453 (591)
T 2zux_A 381 FQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWAN----G--SLYSAK-GVKIGSGVPSSTN 453 (591)
T ss_dssp EEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEET----T--EEECTT-SCBCSSCCCSCCS
T ss_pred EEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEec----C--ceECCC-CCEecCCCCCCcc
Confidence 7776652 355689999999888754 3445555556666443322221 1 356643 4444332122223
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eeEEEcC-------CCccEEEEEECCCCC-EEEEEeCC-CcEEEEe
Q 011971 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS--KLATLTG-------HTFRVLYLAISPDGQ-TIVTGAGD-ETLRFWN 449 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~l~~-------h~~~V~~l~~spdg~-~l~t~s~D-g~I~iW~ 449 (474)
..+-|.-+...-+. ..+.|.-|+...++ .+.++.+ ...+..+..+--|.+ -|+..+.| ..|+||.
T Consensus 454 ~~i~WdGDl~rell----d~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYt 529 (591)
T 2zux_A 454 FGIWWDGDLLREQL----DSNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYT 529 (591)
T ss_dssp EEECCSSSSSCEEE----ETTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEEC
T ss_pred eeEEECCCCcHhhh----CCceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEe
Confidence 35677777754444 23578889987765 4444432 122333444444433 34434444 5699998
Q ss_pred CCCCCC
Q 011971 450 VFPSPK 455 (474)
Q Consensus 450 l~~~~~ 455 (474)
-.....
T Consensus 530 t~~pt~ 535 (591)
T 2zux_A 530 TTIPTE 535 (591)
T ss_dssp CCCCCS
T ss_pred CCCCCc
Confidence 765544
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.41 E-value=1.1e+02 Score=32.21 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.|.++.+ +..+|++-+.|.++++|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 367999999999999999999998877653
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.87 E-value=1.7e+02 Score=27.09 Aligned_cols=231 Identities=9% Similarity=0.055 Sum_probs=121.0
Q ss_pred CCCCEEEEEeCCCcEEEecCCCC----eEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcC---Cc-----ceE
Q 011971 218 NRNTHLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRA---QE-----DFV 284 (474)
Q Consensus 218 p~g~~la~gs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~---~~-----~~~ 284 (474)
|+..++++.+.+|.|+--.+... .....++....-+..+..+ .+.|+..+..|.++-+.... .. .++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 45667888888888876543211 1011123333333333333 47788888888876665432 11 111
Q ss_pred ee-ec-CcCCCEEEEEEecC---CCEEEEEeCCCcEEEEECCC--------CcceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 285 SK-LS-GHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHS--------TQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 285 ~~-~~-~h~~~V~~l~~spd---~~~lasg~~Dg~v~iwd~~~--------~~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
.. +. .....|.++..-.+ +.+|+..+.+|.++...+.. +.....+... ..+..+........+++.
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEE
Confidence 11 11 12344665543332 56899999999999988742 2222233333 445554444434445554
Q ss_pred ecCCCCCeEEEEECCC---------CceeeeecCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCC-------cee
Q 011971 352 GGGTADRCIRFWNTTT---------NTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTM-------SKL 414 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~-------~~~ 414 (474)
. .+|.+..++... |.....+..+..|..+...+++. .+++ .+..|..+..++... +-+
T Consensus 162 T---~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~--vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 162 T---HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVV--ATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp E---TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEE--EETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred e---CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEE--EECCCceEEEEHHHccccCCCCCCE
Confidence 3 578877776532 11222233455677765544444 5666 346777777665431 112
Q ss_pred EEE---cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 415 ATL---TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 415 ~~l---~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..+ ......+..+....++..|+..+..|.+.-.++..-+
T Consensus 237 ~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~ 279 (323)
T 1wp5_A 237 VILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279 (323)
T ss_dssp ECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSC
T ss_pred ECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcC
Confidence 222 1222245543333334556677788887777776543
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=47.04 E-value=2e+02 Score=27.47 Aligned_cols=190 Identities=12% Similarity=0.133 Sum_probs=104.7
Q ss_pred ceeeeeCCCCcEEEEEcCC-eEEEEeCCCC---------CEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 169 YLNLVDWSSHNVLAVGLGN-CVYLWNACSS---------KVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~-~V~lwd~~~~---------~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
.+..++......++...++ .|+.|-.... .......+ -....|..|+.. ..+.++-+.+|.|..|-
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWG 146 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeC
Confidence 4667777777777777765 9999964321 11111111 122356666653 45566667899999996
Q ss_pred CCCC----------e-EEEEecC-CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce----------EeeecC-cCCC
Q 011971 237 ASRC----------K-RVRTMEG-HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF----------VSKLSG-HKSE 293 (474)
Q Consensus 237 ~~~~----------~-~~~~~~~-h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----------~~~~~~-h~~~ 293 (474)
.... . ....+.. ....|..++......+.-..+|.|+.|-.....++ ...+.. ....
T Consensus 147 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~ 226 (406)
T 4d9s_A 147 RNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 226 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCC
T ss_pred CCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCce
Confidence 4321 1 1122222 23368888887788888889999999965432210 111111 1234
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCcc-----------eEEEcc-CCCcEEEEEECCCCCcEEEEecCCCCCeEE
Q 011971 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-----------VLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~-----------~~~~~~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~ 361 (474)
|..++.. ..+.+.-..+|.|+.|-....-. ...+.. ....|..|+--.. ..++++ .|+.|.
T Consensus 227 i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~-hs~alt----~~G~v~ 299 (406)
T 4d9s_A 227 MSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR-HTMALT----SDGKLY 299 (406)
T ss_dssp EEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEE----TTSCEE
T ss_pred EEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC-EEEEEc----CCCeEE
Confidence 6655543 33555567889999997532110 111111 2234666655433 223332 688999
Q ss_pred EEECCC
Q 011971 362 FWNTTT 367 (474)
Q Consensus 362 iwd~~~ 367 (474)
.|=...
T Consensus 300 ~wG~n~ 305 (406)
T 4d9s_A 300 GWGWNK 305 (406)
T ss_dssp EEECCT
T ss_pred EeeCCC
Confidence 996543
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.35 E-value=55 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=40.8
Q ss_pred eeeeCCC-CcEEEEEcC-------------CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 011971 171 NLVDWSS-HNVLAVGLG-------------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~d-------------~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (474)
--|.+++ ++|+.+-.. +.+.+.+..++++.+++.......++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3466777 554444332 2466778888998888776667899999999999988775
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.79 E-value=2.4e+02 Score=26.72 Aligned_cols=231 Identities=9% Similarity=-0.014 Sum_probs=121.3
Q ss_pred EcCCCCEEEEEeCCCcEEEecCCC---------CeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECc---CCc-
Q 011971 216 WANRNTHLAVGTSHGKVQIWDASR---------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIR---AQE- 281 (474)
Q Consensus 216 ~sp~g~~la~gs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~---~~~- 281 (474)
+-++..++++.+.+|.|+--.+.. +..-..++....-+..+..+ .+.|+..+..|.++-+... ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 346778899999999998754321 22233344333333333333 4678878888887766532 211
Q ss_pred ----ceEeee--cCcCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCC-------cceEEEccCCCcEEEEEECCCC
Q 011971 282 ----DFVSKL--SGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHST-------QPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 282 ----~~~~~~--~~h~~~V~~l~~sp---d~~~lasg~~Dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
..+..+ ......|.++..-. ++.+|+.++..|.++...+... .....+.. ...+..+......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 111111 12235566655432 4568999999999999886432 22223333 3344444444333
Q ss_pred CcEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeEEEEEcC-----------------------------
Q 011971 346 HGLLASGGGTADRCIRFWNTTT---------NTHLSCMDTGSQVCNLVWSK----------------------------- 387 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~----------------------------- 387 (474)
..+++.. .+|.+.-++... |-..-.+..+..|..+...+
T Consensus 162 ~~i~l~T---~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 162 RDVLLFA---SNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp CEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC---------------------------
T ss_pred ceEEEEe---CCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 4455543 577776666432 21222233445566665544
Q ss_pred ------CCCeEEEEEecCCCeEEEEECCCCce-------eE--EEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 388 ------NVNELVSTHGYSQNQIIVWRYPTMSK-------LA--TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 388 ------~~~~l~~~~g~~dg~I~iwd~~~~~~-------~~--~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.+..+++ .+..|..+...+..... +. .+....+.+..+.+..++..|+..+..|.+.-..+..
T Consensus 239 ~~~~~~~~~~il~--vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 239 DVADNGDVAYILT--ATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp --------CEEEE--EETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred ccccccCCceEEE--eeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 3345666 45778777776542211 11 2222234555554444445566667777766666554
No 389
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=36.83 E-value=2.7e+02 Score=26.10 Aligned_cols=255 Identities=8% Similarity=-0.003 Sum_probs=119.5
Q ss_pred cceeeeeCCC---CcEEEEEcCC----eEEEEeCCCCCEEEEEe---cC---------CCCCEEEEEEcCC--CCEEEEE
Q 011971 168 FYLNLVDWSS---HNVLAVGLGN----CVYLWNACSSKVTKLCD---LG---------IDDSVCSVGWANR--NTHLAVG 226 (474)
Q Consensus 168 ~~v~~l~~s~---~~~la~~~d~----~V~lwd~~~~~~~~~~~---~~---------~~~~V~~v~~sp~--g~~la~g 226 (474)
..+.+|...+ +.+++++..+ .|+..+-.......+.. +. ....|.+|++.|. ...|.++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 3477787775 5677776665 56655432222222211 11 1125788999872 4556666
Q ss_pred eCCCcEEEecCCCCeEEEEec---C----------------CCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceE
Q 011971 227 TSHGKVQIWDASRCKRVRTME---G----------------HRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 227 s~dg~I~iwd~~~~~~~~~~~---~----------------h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
+..+.|...+- .++.-..+. . ....+.+|.+++ +.|..+..++.|...+- .+....
T Consensus 135 ~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~ 212 (394)
T 3b7f_A 135 TSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWK 212 (394)
T ss_dssp EETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCE
T ss_pred ecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCce
Confidence 66665555432 222222221 1 123578888873 55666655554444322 122111
Q ss_pred eeecC----c--------CCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEcc--CC---CcEEEEEECCCC-
Q 011971 285 SKLSG----H--------KSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCE--HT---AAVKAIAWSPHL- 345 (474)
Q Consensus 285 ~~~~~----h--------~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~--h~---~~V~~l~~sp~~- 345 (474)
..... + ...+.+|.++|+ ...|.++...+ |+..+- .++.-..+.. .. ..+.+++++|..
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 11110 0 135889999985 35676666544 554442 2222112211 11 345678888743
Q ss_pred CcEEEEec-CC-------CCCeEEEEECCC-CceeeeecC--CC-------CeEEEEEcCCC-CeEEEEEecCCCeEEEE
Q 011971 346 HGLLASGG-GT-------ADRCIRFWNTTT-NTHLSCMDT--GS-------QVCNLVWSKNV-NELVSTHGYSQNQIIVW 406 (474)
Q Consensus 346 ~~ll~sg~-Gt-------~d~~I~iwd~~~-~~~~~~~~~--~~-------~v~~l~~s~~~-~~l~~~~g~~dg~I~iw 406 (474)
..+++... +. .++...+|.... |+....+.. .. -...++++|.. ..|++ +..++.|..-
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~--g~~~g~l~~S 368 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYF--GTTGGEIWAS 368 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEE--ECTTSCEEEE
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEE--EeCCCeEEEE
Confidence 34554321 00 123344554443 333333321 11 01357787743 44665 4445554432
Q ss_pred ECCCCceeEEEcCCCccEEEEEE
Q 011971 407 RYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 407 d~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
+ ..++.-..+..+-..+.+|+|
T Consensus 369 ~-D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 369 A-DEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp S-STTSBCEEEECSCSCEEEEEE
T ss_pred C-CCCCCceEcccCCCCeeEEEE
Confidence 2 223333333334445666665
No 390
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=35.16 E-value=3e+02 Score=26.21 Aligned_cols=180 Identities=9% Similarity=0.098 Sum_probs=96.1
Q ss_pred cEEEecCCCC--eEEEEecC------CCCcEEEEEec---------CCE-EEEEeCCCcEEEEECcCCcceEeeecCcCC
Q 011971 231 KVQIWDASRC--KRVRTMEG------HRLRVGALAWS---------SSL-LSSGSRDKSILQRDIRAQEDFVSKLSGHKS 292 (474)
Q Consensus 231 ~I~iwd~~~~--~~~~~~~~------h~~~V~~l~~~---------~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 292 (474)
.|.+||+.+. +.++.+.- ....+..+.++ ..+ .++=+..+.|.++|+.+++. .+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~--~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVT--HPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEE--CGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEc--cCC
Confidence 5777888888 77777642 23457777776 123 33334567899999988773 3322 221
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCC----CCcEEEEecCCCCCeEEEEE---C
Q 011971 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH----LHGLLASGGGTADRCIRFWN---T 365 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~ll~sg~Gt~d~~I~iwd---~ 365 (474)
|.|+.....+. +|.-. .+ ...+..|+.+|+ ++.|+...- ....+.-.. +
T Consensus 201 ------~~pd~~~~~~i--~G~~~-----------~~---~~Gi~gIaLsp~~~~~~~~LYf~pl--ss~~ly~V~T~~L 256 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEY-----------EF---KAGIFGITLGDRDSEGNRPAYYLAG--SAIKVYSVNTKEL 256 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEE-----------EE---CCCEEEEEECCCCTTSCCEEEEEES--SCSEEEEEEHHHH
T ss_pred ------CccccCcceEE--CCEEe-----------Ee---ccCceEEEecCCcCCCCeEEEEEEC--CCCcEEEEEHHHh
Confidence 33441111111 12111 11 345889999998 666666653 233333322 1
Q ss_pred CCC---ceeeeec-CC--CCeEEEEEc-CCCCeEEEEEecCCCeEEEEECCC-C---ceeEEEc--CCCccEEEEEECCC
Q 011971 366 TTN---THLSCMD-TG--SQVCNLVWS-KNVNELVSTHGYSQNQIIVWRYPT-M---SKLATLT--GHTFRVLYLAISPD 432 (474)
Q Consensus 366 ~~~---~~~~~~~-~~--~~v~~l~~s-~~~~~l~~~~g~~dg~I~iwd~~~-~---~~~~~l~--~h~~~V~~l~~spd 432 (474)
+.. ..+..+. .+ ++-..+++. .+|..+++ -...+.|..|+... . .....+. ..-..+..+.+..+
T Consensus 257 ~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~--~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~ 334 (381)
T 3q6k_A 257 KQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFA--EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSK 334 (381)
T ss_dssp SSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEE--ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTT
T ss_pred hCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEE--eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCC
Confidence 121 1222222 22 455567776 56665655 56889999999865 1 1222222 11224667777777
Q ss_pred CCEEEEE
Q 011971 433 GQTIVTG 439 (474)
Q Consensus 433 g~~l~t~ 439 (474)
|.+.+..
T Consensus 335 g~Lwv~s 341 (381)
T 3q6k_A 335 GGLWFMS 341 (381)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 7655544
No 391
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=33.45 E-value=3.9e+02 Score=27.00 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=88.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEc-------------------cCC----C-c-EEEEEECCCCCcEEEEecCCCC
Q 011971 303 NRELASGGNDNRLFVWNQHSTQPVLKYC-------------------EHT----A-A-VKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~~~~~~~-------------------~h~----~-~-V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
...++.|++||.++.+|.. ++....+- .|. + + +..+.+...-+.+|+.+-|.-.
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3588999999999999987 65444331 021 1 1 2223332222335555433335
Q ss_pred CeEEEEECCC---CceeeeecCCC--------CeEEEEEcCCCCeEEEEEec-----CCCeEEEEECCCCceeEEEcCCC
Q 011971 358 RCIRFWNTTT---NTHLSCMDTGS--------QVCNLVWSKNVNELVSTHGY-----SQNQIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 358 ~~I~iwd~~~---~~~~~~~~~~~--------~v~~l~~s~~~~~l~~~~g~-----~dg~I~iwd~~~~~~~~~l~~h~ 421 (474)
+.+...|+.+ .+.+.++.... .-..+.--.+++++++..+. ....|+|.|+.++..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 5677788765 44555554110 11123334467776665332 24589999999999998875221
Q ss_pred -----ccEEEEE-ECCC--C--CEEEEEeCCCcEEEEeCCCCCC
Q 011971 422 -----FRVLYLA-ISPD--G--QTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 422 -----~~V~~l~-~spd--g--~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
..+..++ +..| | ..++.|...|.|.-+|+.....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 1233333 2233 3 3789999999998888877654
No 392
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=30.68 E-value=3.6e+02 Score=25.69 Aligned_cols=182 Identities=9% Similarity=0.076 Sum_probs=101.0
Q ss_pred eEEEEeCCCC--CEEEEEecCC-----CCCEEEEEEc---CC----CCEEEEEe-CCCcEEEecCCCCeEEEEecCCCCc
Q 011971 188 CVYLWNACSS--KVTKLCDLGI-----DDSVCSVGWA---NR----NTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLR 252 (474)
Q Consensus 188 ~V~lwd~~~~--~~~~~~~~~~-----~~~V~~v~~s---p~----g~~la~gs-~dg~I~iwd~~~~~~~~~~~~h~~~ 252 (474)
.|.+||+.++ ++++.+.+.. ...+..+.+. +. +.++.+.. ..+-|.|+|+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 7899999999 9999887732 3457888887 22 33444444 3567999999999988776321
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC----CCEEEEEeCCC-cEEEEE---CCCC-
Q 011971 253 VGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD----NRELASGGNDN-RLFVWN---QHST- 323 (474)
Q Consensus 253 V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----~~~lasg~~Dg-~v~iwd---~~~~- 323 (474)
|.++....-.-+|.-. .+ ...|.+|+++|+ ++.|.-..-.+ .++-.. ++..
T Consensus 201 -----~~pd~~~~~~i~G~~~------------~~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 201 -----FKAERPTKFDYGGKEY------------EF---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG 260 (381)
T ss_dssp -----GSCCSCEEEEETTEEE------------EE---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT
T ss_pred -----CccccCcceEECCEEe------------Ee---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc
Confidence 1111000000011111 11 245889999997 67776665544 343333 1221
Q ss_pred --cceEEEccC--CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-C---ceeeeecCC---CCeEEEEEcCCCCeE
Q 011971 324 --QPVLKYCEH--TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-N---THLSCMDTG---SQVCNLVWSKNVNEL 392 (474)
Q Consensus 324 --~~~~~~~~h--~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~---~~~~~~~~~---~~v~~l~~s~~~~~l 392 (474)
..+..+-.. ...-..+++.+....|+++-- ....|..||..+ . .....+... ..+..+.+..++...
T Consensus 261 ~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~--~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lw 338 (381)
T 3q6k_A 261 GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA--NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLW 338 (381)
T ss_dssp CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES--SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEE
T ss_pred hhhceEEeeecCCCCCcceEEEeCCCCeEEEEec--cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEE
Confidence 222222111 133445677643344666553 688899999875 1 122222222 236667776666544
Q ss_pred EE
Q 011971 393 VS 394 (474)
Q Consensus 393 ~~ 394 (474)
+.
T Consensus 339 v~ 340 (381)
T 3q6k_A 339 FM 340 (381)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 393
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=29.71 E-value=3.7e+02 Score=25.49 Aligned_cols=226 Identities=10% Similarity=0.004 Sum_probs=120.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-e------------EEEEecCCCCcEEEEEecCCEEEEEeCCCcEEE
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-K------------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQ 274 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~-~------------~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~i 274 (474)
...|..|+.. +.+.++-..+|.|..|-.... + ....+ .-...|..++......+.-..||.|+.
T Consensus 58 ~~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 58 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGDSHTAALTDDGRVFL 134 (413)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCCCeEEEEcCCCcEEE
Confidence 3566666653 345566677888998854321 0 01111 123468888877778888889999999
Q ss_pred EEC--cCCcc------------eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cc--------------
Q 011971 275 RDI--RAQED------------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QP-------------- 325 (474)
Q Consensus 275 wd~--~~~~~------------~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~-------------- 325 (474)
|-. ....+ +.. + .....|..|+.- ..+.+.-..||.|+.|-.... +.
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~-v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQ-V-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEE-E-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred eeCCcCCCCccCcCCccccccCCEE-e-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 975 21110 111 1 123456666553 345566678899999975431 10
Q ss_pred -------eEEEcc------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-----------eeecC--C--
Q 011971 326 -------VLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL-----------SCMDT--G-- 377 (474)
Q Consensus 326 -------~~~~~~------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~-----------~~~~~--~-- 377 (474)
...+.. ....|..|+.-.+ ..++++ .+|.|..|-....-.+ ..+.. .
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt----~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAIS----HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEE----TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEe----CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCC
Confidence 000111 2245666665543 223332 6889999975432110 11111 1
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------c---eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM---------S---KLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---------~---~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
..|..++.... +.++ -..+|.|+.|-.... . ....+. ....|..++... .+.+.-..||.|
T Consensus 286 ~~v~~ia~G~~--hs~a--l~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G~--~hs~alt~~G~v 358 (413)
T 1a12_A 286 KSWVGFSGGQH--HTVC--MDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGA--SVGYAVTKDGRV 358 (413)
T ss_dssp CCEEEEEECSS--EEEE--EETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECS--SEEEEEETTSCE
T ss_pred ceEEEEecccc--eEEE--EeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEECc--ceEEEEeCCCCE
Confidence 23555544332 2222 227889999975321 1 111112 223677777643 355556789999
Q ss_pred EEEeCCC
Q 011971 446 RFWNVFP 452 (474)
Q Consensus 446 ~iW~l~~ 452 (474)
+.|=...
T Consensus 359 ~~wG~n~ 365 (413)
T 1a12_A 359 FAWGMGT 365 (413)
T ss_dssp EEEECCT
T ss_pred EEecCCC
Confidence 9997654
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.00 E-value=3.2e+02 Score=24.24 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=76.7
Q ss_pred EEEEEeCCCcEEEEECCCCc-ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE---ECCC----Ccee---ee
Q 011971 305 ELASGGNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW---NTTT----NTHL---SC 373 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw---d~~~----~~~~---~~ 373 (474)
.+++.+.+|.|+--...... ....+.....-+..+....+.. +++.. ..|.++-+ ++.. |..+ -.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~-ll~~T---~~Gr~~~~~~~elp~~r~~G~~i~~~i~ 79 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP-VVFVD---STGRSYAIDPITLPSARGQGEPLTGKLT 79 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSC-EEEEE---TTSEEEEECGGGSCCSSSCCEEGGGTCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCE-EEEEe---CCCeEEEEEHHHCCCcCCCCeEeeeeec
Confidence 34555666666655443211 1112333333333444444444 44433 46665544 3422 2211 12
Q ss_pred ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------ceeEEEcCCCccEEEEEEC-CCCCEEEEEeCCCcE
Q 011971 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-------SKLATLTGHTFRVLYLAIS-PDGQTIVTGAGDETL 445 (474)
Q Consensus 374 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~s-pdg~~l~t~s~Dg~I 445 (474)
+..+..|..+....+..+++. .+..|.++...+... .....+.. .+.+..+... .++..|+..+.+|.+
T Consensus 80 L~~~e~Iv~~~~~~~~~~lll--~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 80 LPPGATVDHMLMESDDQKLLM--ASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp CCTTCCEEEEECCCTTCEEEE--EBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCCCCEEEEEEEeCCCCEEEE--EeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 334567777755455666776 568999998887432 22333332 2455555555 345678888999999
Q ss_pred EEEeCCCCC
Q 011971 446 RFWNVFPSP 454 (474)
Q Consensus 446 ~iW~l~~~~ 454 (474)
..+++..-+
T Consensus 157 lrf~~~ei~ 165 (256)
T 1zvt_A 157 LMFPVSDLP 165 (256)
T ss_dssp EEEEGGGSC
T ss_pred EEEEHHHCC
Confidence 889886543
No 395
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.13 E-value=2.4e+02 Score=21.39 Aligned_cols=15 Identities=0% Similarity=-0.210 Sum_probs=9.4
Q ss_pred EEEEEeCCCcEEEEE
Q 011971 262 LLSSGSRDKSILQRD 276 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd 276 (474)
+.+.--.||.+.+|+
T Consensus 91 ~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 91 YVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred EEEEEcCCceEEEec
Confidence 344556677777775
Done!