BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011972
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2
OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
Length = 469
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/478 (65%), Positives = 388/478 (81%), Gaps = 13/478 (2%)
Query: 1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
MASRKLVRDL +++Q P QL + RL L+ NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59
Query: 61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
+SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ GVW EAES KKVS+S+
Sbjct: 60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119
Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
K+K SAATEEVK +F+ G +++ G + GE++Q+Q+ S++ +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176
Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
SSISSPK + AF K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231
Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
T++V+ P+K+S W K L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291
Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVET 356
PIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +T
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKT 351
Query: 357 LKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 416
LKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+I
Sbjct: 352 LKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEI 411
Query: 417 YCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 474
+CVRD+ G I EGG+DTI TVYY WAMQQVDA ELGED +YPIW+LREM + GVQALI
Sbjct: 412 FCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 469
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1
OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1
Length = 474
Score = 598 bits (1543), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/480 (61%), Positives = 373/480 (77%), Gaps = 12/480 (2%)
Query: 1 MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
MA RK++RDL +++Q P QL + ++ R + A GY+S+R+FSVF EFSK I+G
Sbjct: 1 MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59
Query: 59 EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES KKVS+
Sbjct: 60 EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119
Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
S+K+K+SAA+EEVK +F+ G + + + G +AS GE ++Q+ S++ TF+ K
Sbjct: 120 SVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAK 174
Query: 179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
KSS+SSPK + F +LKEAK D+ K+ DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234
Query: 239 TRTDLVVTPSKKSM----WSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETS 294
RT++VVT +K+S W +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETS
Sbjct: 235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETS 294
Query: 295 DNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDV 354
DNPIVHKIQDMNE +ETD+A++ KEIR RDPSFSLPDF +E++E I+PVL+AY +GDV
Sbjct: 295 DNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDV 354
Query: 355 ETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQ 414
ETLKKYCS EVIERC AE TAYQ+HG+ FDN++LH+SEV V TKMMG SPIII FQTQ
Sbjct: 355 ETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQ 414
Query: 415 QIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 474
+IYCVRD++G I EGG+DTI TVY+ WAMQQV+ ELGED +YPIW+LREM + GVQALI
Sbjct: 415 EIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTELGEDAIYPIWRLREMCRNGVQALI 474
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44
OS=Mus musculus GN=Timm44 PE=2 SV=2
Length = 452
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 286 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 338
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQC 319
Query: 339 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 397
+ I P +L A + G+++ LK +C + ++ G F +RIL +S V++
Sbjct: 320 ETDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAM 379
Query: 398 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 457
KMM P++IV FQ Q + +++ G + +G D +Q + Y WA+ + D EEL Y
Sbjct: 380 GKMMEQGPVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCR-DQEELNP---Y 435
Query: 458 PIWKLREM 465
W+L ++
Sbjct: 436 AAWRLLDI 443
>sp|O43615|TIM44_HUMAN Mitochondrial import inner membrane translocase subunit TIM44
OS=Homo sapiens GN=TIMM44 PE=1 SV=2
Length = 452
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 286 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 338
+++ +++ SDN + K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 260 EMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQC 319
Query: 339 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 397
+ I P VL A + G+++ LK +C + ++ G+ F +RIL + V++
Sbjct: 320 ENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAM 379
Query: 398 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 457
KMM P++I+ FQ Q + VR+ G + EG D + + Y WA+ + D +EL Y
Sbjct: 380 GKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCR-DQDELNP---Y 435
Query: 458 PIWKLREM 465
W+L ++
Sbjct: 436 AAWRLLDI 443
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44
OS=Rattus norvegicus GN=Timm44 PE=2 SV=1
Length = 453
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 12/188 (6%)
Query: 286 DVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEV 338
+++ +++ SDN ++ K+ D+ +F +T+ + + EI R DP+F F+ +
Sbjct: 261 EMKMKYDESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQC 320
Query: 339 QEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRE 397
+ I P +L A + G+++ LK +C + ++ G+ F +RIL +S V++
Sbjct: 321 ETDIIPNILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAM 380
Query: 398 TKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLY 457
KMM P++IV FQ Q + +++ G + +G D + + Y WA+ + D EEL Y
Sbjct: 381 GKMMEQGPVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCR-DQEELNP---Y 436
Query: 458 PIWKLREM 465
W+L ++
Sbjct: 437 AAWRLLDI 444
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim44 PE=3 SV=1
Length = 427
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 285 EDVRERWETSDNPIVHKIQDMNETI-------FQETDAAASIKEIRRRDPSFSLPDFVSE 337
+++++ ++ S++PIV I+DM ++I F ET+A+ ++ + DPSF+ F+
Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288
Query: 338 VQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVR 396
++E I P V AY+KGD E LK + S + Y HG+ +IL + V++
Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIM 348
Query: 397 ETKMMGSS--PIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAE 449
+++ + P+ IV F+TQ+++ +D G + G D IQ YA +V+ E
Sbjct: 349 SQRLLQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDE 404
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM44 PE=1 SV=1
Length = 431
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Query: 291 WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VL 346
W+ S+NP++ KI + F ET+++ + + DP+FS F ++E I P +L
Sbjct: 243 WDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEIL 302
Query: 347 SAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSS-- 404
AY+KGDV+ LKK+ S A+ ++ ++ D RIL + VE+ K++
Sbjct: 303 EAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDI 362
Query: 405 PIIIVAFQTQQIYCVRDKH-GTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLR 463
P+++V + Q+I R K G I G + I YA + D E++ +D WK+
Sbjct: 363 PVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQIDDDETEG-WKIL 420
Query: 464 EMQQLG 469
E + G
Sbjct: 421 EFVRGG 426
>sp|O02161|TIM44_CAEEL Probable mitochondrial import inner membrane translocase subunit
tim-44 OS=Caenorhabditis elegans GN=tim-44 PE=3 SV=1
Length = 425
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 286 DVRERWETSDNPIVHKIQDMNE---TIFQ-ETDAAASIKEIRRRDPSFSLPDFVSEVQEA 341
D + +++ SDN V ++ + E ++F + + + + EI + D +F +++ +
Sbjct: 235 DWKIKYDESDNMAVRMMRGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETK 294
Query: 342 IRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQS-HGIFFDNRILHVSEVEVRETK 399
I P +L A+++ D+E L+ +C + YQ H D+RI+ +++VE+ K
Sbjct: 295 IIPNILEAFIRFDLEVLQSWCHERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGK 354
Query: 400 MMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPI 459
MM P++I++FQ I ++ G + EG D + + + W + + D EE +
Sbjct: 355 MMEQGPVLIISFQVYMINVTKNADGKVVEGDPDNPKRINHIWVLCR-DVEEYNPAL---A 410
Query: 460 WKLREMQ 466
WKL E+
Sbjct: 411 WKLLEVH 417
>sp|B4U237|UXAC_STREM Uronate isomerase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uxaC PE=3 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|C0MA32|UXAC_STRE4 Uronate isomerase OS=Streptococcus equi subsp. equi (strain 4047)
GN=uxaC PE=3 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S + FK F++ ++ + NP + SV ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASKLDKFKAFARTLQ-RSYGNPVYHWSVMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ GV E L T+ E++Y +++ +E + + +K+ A + + T+
Sbjct: 109 -VFGVCELL---TEDNAEEIYHRINAYLVEHQISPRKLIADSRVRFIGTTDH 156
>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila
melanogaster GN=mRpL45 PE=2 SV=1
Length = 361
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 307 ETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKY----CS 362
E + +++ + ++++IR D +FS DF +E Q+ + D ++++ C
Sbjct: 141 EFLEKKSKSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY 200
Query: 363 PEVIERCKAEHTAYQSHGIFFDNRILH--VSEVEVRETKMMGSSPIIIVAFQTQQIYCVR 420
PE++ K + ++ R++H V+EV +E + + V F +QQ+ +
Sbjct: 201 PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQ----VTVRFHSQQMLAIY 256
Query: 421 DKHGTITEGG----KDTIQTVYY 439
D+ G + G KD ++ V +
Sbjct: 257 DRFGRLMHGSEIITKDVLEYVVF 279
>sp|B9DSL9|UXAC_STRU0 Uronate isomerase OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=uxaC PE=3 SV=1
Length = 467
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 25 LQGSSTRLRLVSANGYS------SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE 78
L G + RL+ ANG S S Q FK F++ ++ + NP + S ELK
Sbjct: 53 LGGDHYKWRLMRANGISEEEITGSASQLDKFKAFARTLQ-RSYGNPVYHWSAMELKN--- 108
Query: 79 EIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEE 130
+ G++E L T++ E++Y +++ +E + + +K+ A K T+
Sbjct: 109 -VFGIEEVL---TEENAEEIYNRLNTYLLENKVSPRKLIADSKVTFIGTTDH 156
>sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1
SV=3
Length = 2644
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 217 GSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKS-MWSKLKEKMQGYPVFKRITGISEP 275
G KR+ L + +PS K T V ++KS +WS LK+K + + +G+ P
Sbjct: 426 GISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSILWSALKQKAESLQISLEYSGLKNP 485
Query: 276 VVTKGQEIAEDVRERWETSDNPIVH-KIQDMNETIFQETDAAASIKEIRRRDPSFSLP-- 332
V+ E+ E + + + VH Q+MN F++ + ++ PS +
Sbjct: 486 VI----EMLEGIAVVLQLTALCTVHCSHQNMNCRTFKDCQHKS------KKKPSVVITWM 535
Query: 333 --DFVSEVQEAIRPVLSAYMKGDVE 355
DF ++V ++ R +L + K D+E
Sbjct: 536 SLDFYTKVLKSCRSLLESVQKLDLE 560
>sp|Q0VBM2|FA83B_MOUSE Protein FAM83B OS=Mus musculus GN=Fam83b PE=1 SV=1
Length = 1012
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 209 DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKR 268
D+ K+E + P+ +K + +PS G + R+ L +TP K+ +K K P F R
Sbjct: 745 DVNKEEPNKEPNSKKEGKASPSFLKKGSQKLRSLLSLTPEKRESLAKNKA-----PAFYR 799
Query: 269 ITGISEPVVTKGQE 282
+ S+ +V++G+E
Sbjct: 800 MCSSSDTLVSEGEE 813
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|B2TS45|MUTS2_CLOBB MutS2 protein OS=Clostridium botulinum (strain Eklund 17B / Type B)
GN=mutS2 PE=3 SV=1
Length = 785
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 16 RPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG-EAESNPEFKHSVKEL- 73
RP + L + G S N + +++ + KE K ++ N EF+ ++ L
Sbjct: 473 RPTYRLLIGVPGKS--------NAFEISKRIGLGKEVIDCAKNYMSKENLEFEGLIRNLQ 524
Query: 74 ------KKKAEEIKGVKEE---LKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122
KK A + K +K+E LK++ +Q E+L K D +MEA KK+ A+ K+
Sbjct: 525 EKSIIAKKDARDAKVIKDEADNLKKKYEQKLERLEKVKDKAYMEAREEAKKIVANAKD 582
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 35 VSANGYSSNRQFSVFKEFSK----KIKGEAESNPEF---KHSVKELKK-----KAEEIKG 82
+S NG S +F V K+FS ++N E KH++ ++ K K E+
Sbjct: 317 ISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPD 376
Query: 83 VKEELKERTKQT-TEQLYKQVDGVWMEAESTVKKVSASMKE------KISAATEEVKGTF 135
+ +E K+ T +T TE+L K + G+ E E T + ++ K+ A +E+
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436
Query: 136 RTG 138
++G
Sbjct: 437 KSG 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,691,597
Number of Sequences: 539616
Number of extensions: 7008306
Number of successful extensions: 28415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 526
Number of HSP's that attempted gapping in prelim test: 27169
Number of HSP's gapped (non-prelim): 1366
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)