Query 011972
Match_columns 474
No_of_seqs 237 out of 663
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 19:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk9_A Mitochondrial import in 100.0 2E-56 6.9E-61 431.9 18.1 206 251-473 7-221 (222)
2 2cw9_A Translocase of inner mi 100.0 6.5E-46 2.2E-50 351.5 20.7 183 287-473 3-193 (194)
3 4hyz_A Uncharacterized protein 88.4 2.5 8.5E-05 36.0 9.2 84 323-412 5-89 (114)
4 3gzr_A Uncharacterized protein 84.0 10 0.00036 32.8 11.2 108 337-467 7-127 (146)
5 2f86_B Hypothetical protein K1 83.5 0.71 2.4E-05 40.7 3.3 110 336-471 12-134 (143)
6 2ux0_A Calcium-calmodulin depe 83.2 18 0.00061 30.2 12.0 29 336-364 13-41 (143)
7 3soy_A NTF2-like superfamily p 82.3 8.1 0.00028 33.5 9.7 117 334-470 8-136 (145)
8 3h51_A Putative calcium/calmod 80.5 10 0.00035 32.6 9.7 110 336-469 20-139 (156)
9 3f7s_A Uncharacterized NTF2-li 80.0 25 0.00085 29.3 12.1 28 337-364 9-36 (142)
10 4i4k_A Uncharacterized protein 79.4 22 0.00075 30.3 11.5 29 337-365 20-48 (143)
11 2r4i_A Uncharacterized protein 78.9 7.4 0.00025 31.3 7.8 30 336-365 6-35 (123)
12 3cnx_A Uncharacterized protein 78.7 38 0.0013 30.6 14.9 29 337-365 13-41 (170)
13 3fsd_A NTF2-like protein of un 77.3 11 0.00039 31.5 8.8 106 336-467 14-130 (134)
14 3hx8_A MLR2180 protein, putati 74.8 31 0.001 27.6 13.9 110 336-471 6-127 (129)
15 3gwr_A Putative calcium/calmod 72.6 32 0.0011 29.6 10.7 27 338-364 10-36 (144)
16 3bb9_A Putative orphan protein 71.1 28 0.00096 29.4 9.9 29 337-365 31-59 (148)
17 3ksp_A Calcium/calmodulin-depe 68.5 32 0.0011 29.7 9.6 99 345-468 18-124 (129)
18 3rob_A Uncharacterized conserv 68.5 56 0.0019 28.0 12.9 101 338-464 19-131 (139)
19 3ejv_A Uncharacterized protein 61.8 28 0.00097 31.2 8.3 117 337-466 27-169 (179)
20 3blz_A NTF2-like protein of un 60.7 32 0.0011 28.6 8.0 94 337-466 13-121 (128)
21 3duk_A NTF2-like protein of un 59.4 63 0.0021 27.1 9.6 90 338-464 14-118 (125)
22 3fka_A Uncharacterized NTF-2 l 58.5 56 0.0019 27.2 9.1 89 339-465 12-115 (120)
23 3b7c_A Uncharacterized protein 55.0 59 0.002 26.5 8.6 29 337-365 6-36 (122)
24 2gxf_A Hypothetical protein YY 50.3 55 0.0019 27.3 7.8 111 337-470 4-124 (142)
25 3d9r_A Ketosteroid isomerase-l 47.2 1.1E+02 0.0037 24.5 13.8 28 337-364 12-39 (135)
26 2rcd_A Uncharacterized protein 45.3 1.2E+02 0.0043 24.7 10.9 30 335-364 13-42 (129)
27 3ehc_A Snoal-like polyketide c 40.2 70 0.0024 26.0 6.7 28 338-365 5-32 (128)
28 3cu3_A Domain of unknown funct 35.2 2.1E+02 0.0073 24.4 11.1 29 336-364 16-44 (172)
29 2gey_A ACLR protein; alpha+bet 33.7 1.7E+02 0.006 24.6 8.5 27 338-364 6-32 (158)
30 3b8l_A Uncharacterized protein 32.9 1.9E+02 0.0064 24.4 8.6 28 337-364 29-57 (163)
31 3en8_A Uncharacterized NTF-2 l 32.7 2.1E+02 0.0072 23.6 9.5 29 337-365 6-34 (128)
32 3dmc_A NTF2-like protein; stru 32.2 12 0.00041 31.8 0.7 32 334-365 10-41 (134)
33 3dm8_A Uncharacterized protein 29.8 2.4E+02 0.0082 23.4 9.3 27 339-365 7-33 (143)
34 2chc_A Protein RV3472; hypothe 29.8 2.6E+02 0.0088 23.7 11.1 27 338-364 16-42 (170)
35 3g0k_A Putative membrane prote 29.4 1.1E+02 0.0038 26.1 6.5 29 337-365 28-57 (148)
36 3f40_A Uncharacterized NTF2-li 27.6 20 0.00067 29.7 1.2 27 339-365 9-35 (114)
37 2rfr_A Uncharacterized protein 26.7 2.7E+02 0.0092 22.9 9.0 28 337-364 20-47 (155)
38 2i7u_A Four-alpha-helix bundle 23.0 92 0.0032 23.2 3.9 22 56-80 4-25 (62)
39 3s84_A Apolipoprotein A-IV; fo 22.6 5.2E+02 0.018 24.8 10.8 17 86-102 70-86 (273)
40 3he4_B Synzip5; heterodimeric 22.0 1E+02 0.0035 21.7 3.7 25 64-88 6-30 (46)
41 3us6_A Histidine-containing ph 21.7 38 0.0013 30.0 1.9 55 308-362 16-79 (153)
No 1
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=100.00 E-value=2e-56 Score=431.89 Aligned_cols=206 Identities=27% Similarity=0.527 Sum_probs=162.4
Q ss_pred hhhHH-HHHhhcCCccccccccccCccccccccchHHhhhh-hhccccchhhhhhccccc---ccccChHHHHHHHHHhc
Q 011972 251 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNET---IFQETDAAASIKEIRRR 325 (474)
Q Consensus 251 s~w~~-~k~~~~~~p~~~~~~~~~~p~~~k~~e~~~d~k~~-~eeSdnP~v~~i~di~d~---lf~ete~a~al~eIk~~ 325 (474)
.+|++ |++|+++||++++|+ |||++ |||||||+|+++|+|+|+ ||++|+++++|++|+++
T Consensus 7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~ 71 (222)
T 3qk9_A 7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM 71 (222)
T ss_dssp --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence 38999 999999999999999 99999 999999999999999984 89999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH-HHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeC--
Q 011972 326 DPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG-- 402 (474)
Q Consensus 326 DPsFd~~~Fl~~are~~ip-IleAy~~GDle~Lk~~csea~y~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e-- 402 (474)
||+||+++|+++|+++|+| ||+||.+||++.||+||++++|+.|+++|++|.++|+++++++|+|++++|+++++++
T Consensus 72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~ 151 (222)
T 3qk9_A 72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ 151 (222)
T ss_dssp ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence 9999999999999999887 9999999999999999999999999999999999999999999999999999999995
Q ss_pred CeeEEEEEEEEeEEEEEEc-CCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeeccccccC
Q 011972 403 SSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQAL 473 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRD-k~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~a~ 473 (474)
+.|+|+|+|++|||+|+|| ++|+||+|+|++|.++.|+|+|+| ++++++ +..+|+|+|++|||.|+.+.
T Consensus 152 ~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R-~~~~~d-~~~tp~WkL~eiq~~~~~~~ 221 (222)
T 3qk9_A 152 DIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQID-DDETEGWKILEFVRGGSRQF 221 (222)
T ss_dssp CCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEE-CCC---------CEEEEEEECCCCSCC
T ss_pred CceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEE-cCccCC-CCCCCCcEEehhhccccccc
Confidence 7999999999999999999 999999999999999999999976 666554 23458999999999997654
No 2
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=100.00 E-value=6.5e-46 Score=351.54 Aligned_cols=183 Identities=27% Similarity=0.560 Sum_probs=162.4
Q ss_pred hhhhhhccccchh-------hhhhcccccccccChHHHHHHHHHhcCCCCChhhHHHHHHHH-HHHHHHHHHcCCHHHHH
Q 011972 287 VRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEA-IRPVLSAYMKGDVETLK 358 (474)
Q Consensus 287 ~k~~~eeSdnP~v-------~~i~di~d~lf~ete~a~al~eIk~~DPsFd~~~Fl~~are~-~ipIleAy~~GDle~Lk 358 (474)
.+++|||||||+| ++++|++++||++|+.+.+|++|+++||+||++.|+++|+.+ |.+||+||.+||++.|+
T Consensus 3 ~~~~~~~s~n~~v~~~r~~~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr 82 (194)
T 2cw9_A 3 SGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 82 (194)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHH
T ss_pred ccccccCCCCceEEeehhhhhhhhhhhccccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999 588888999999999999999999999999999999999999 67799999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEe
Q 011972 359 KYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVY 438 (474)
Q Consensus 359 ~~csea~y~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~ 438 (474)
+||||++|+.|+++|++|..+|+++++++|+|++++|++++++++.|+++|+|++|+|+|+||++|+||+|+|+.+..+.
T Consensus 83 ~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v~i~~~el~~a~~~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~ 162 (194)
T 2cw9_A 83 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML 162 (194)
T ss_dssp HHBCHHHHHHHHHHHHHHHHTTCEECCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCccccEEEEecccEEEEEEEeCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecccccCCCCCCCCeEEeeeeccccccC
Q 011972 439 YAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQAL 473 (474)
Q Consensus 439 yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~a~ 473 (474)
|+|+|+|+ ....+| +++|+|++|+|+++..+
T Consensus 163 e~W~f~R~-~~~~~p---~~~W~L~~iq~~~~~~~ 193 (194)
T 2cw9_A 163 YVWALCRD-QDELNP---YAAWRLLDISASSTEQI 193 (194)
T ss_dssp EEEEEEEC-TTCSCG---GGCEEEEEEEEEECTTC
T ss_pred EEEEEEEe-CCCCCC---CCCEEEEEEcccccccc
Confidence 99999884 433222 23599999999988654
No 3
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=88.41 E-value=2.5 Score=35.97 Aligned_cols=84 Identities=8% Similarity=-0.023 Sum_probs=51.5
Q ss_pred HhcCCCCChhhHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHhCC-CcccceEEeecceeEEEEEEe
Q 011972 323 RRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHG-IFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 323 k~~DPsFd~~~Fl~~are~~ipIleAy~~GDle~Lk~~csea~y~~~~~~Ik~r~~~G-~~~d~kIL~I~~veLv~ak~~ 401 (474)
+.++..||.+.-...|++ +++-+..||.+.+..+|++.+-+.+..+.-. .-.. ..--..+..+.++.+.... .
T Consensus 5 ~~l~~~fde~~v~~~A~~----~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~~G~f~s~~~~~~~~~~-~ 78 (114)
T 4hyz_A 5 KELPEGFDKETVRKQAME----DIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEKQGEFKEFGKCTYLGQI-K 78 (114)
T ss_dssp SSCCTTCCHHHHHHHHHH----HHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHTTCSEEEEEEEEEEEEE-E
T ss_pred hcCChhhhHHHHHHHHHH----HHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHhcCCceeeeceeeeeec-c
Confidence 567889999977777764 4566667999999999999985554433222 1111 0013467777777765543 3
Q ss_pred CCeeEEEEEEE
Q 011972 402 GSSPIIIVAFQ 412 (474)
Q Consensus 402 e~~pvitVrF~ 412 (474)
++....+|-+.
T Consensus 79 ~~~~y~vv~~~ 89 (114)
T 4hyz_A 79 DNKKYGGVIIV 89 (114)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCceEEEEEE
Confidence 44334444333
No 4
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=84.03 E-value=10 Score=32.79 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHHH------------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEE-eCC
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEVI------------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKM-MGS 403 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~y------------~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~-~e~ 403 (474)
..++.+.....||.+||.+.|..+++|++- ..+.+-+..+-... ...+. +.+ .+..+.+ .++
T Consensus 7 aI~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~-~~~~~-~~~---~~~~i~~~~~D 81 (146)
T 3gzr_A 7 AIQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTI-FKDCK-QEL---VTIEARTIAPG 81 (146)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTT-TTTCC-EEE---EEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcc-cCCCE-EEE---eEEEEEEcCCC
Confidence 345566668899999999999998777651 22233333322221 11222 222 2233333 356
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeec
Q 011972 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 467 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq 467 (474)
.++++.+|... -.....|..+ | .....+.|+|.|. ..+|+|+..+-
T Consensus 82 ~A~v~~~~~l~---g~~~~~G~~~---~--~~~~~~t~v~vr~----------dg~WrI~a~h~ 127 (146)
T 3gzr_A 82 SALAVVTLIQD---AYVTPDGRQM---P--RAHDRLTLLAVER----------EGVWRFIHGHN 127 (146)
T ss_dssp EEEEEEEEEEC---CEECTTCCEE---C--CEEEEEEEEEEEE----------TTEEEEEEEEE
T ss_pred EEEEEEEEEec---ceeCCCCCcC---C--ccCcEEEEEEEEE----------CCEEEEEEEec
Confidence 77666655431 1122344322 1 1345677888774 25799998764
No 5
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=83.52 E-value=0.71 Score=40.67 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHH--HHH-----HHHHHHHhCCCccc---ce--EEeecceeEEEEEEeC-
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPEVIE--RCK-----AEHTAYQSHGIFFD---NR--ILHVSEVEVRETKMMG- 402 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea~y~--~~~-----~~Ik~r~~~G~~~d---~k--IL~I~~veLv~ak~~e- 402 (474)
+....+...+++|+..||.+.+..+|+|++-- -.. .-+..... + ++ .+ ...+.+. .+.+.+
T Consensus 12 ~eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~~~~g~~~~r~--~-f~~~~~~~~~~~~~~~---~V~~~g~ 85 (143)
T 2f86_B 12 QDIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRF--Y-FDGNRKNQVHTTMLNP---NVHIIGE 85 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHT--T-SSSCSCCSCEEEEEEE---EEEEETT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCccccCHHHHHH--H-HhcccCCcceeEEEcc---eEEEeCC
Confidence 34445556689999999999999888876531 110 11122110 0 11 11 1122221 233456
Q ss_pred CeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeeccccc
Q 011972 403 SSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQ 471 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~ 471 (474)
+.++++-...++ ..+.+|+.+.+ -.+.+.+|. +. ..+|+++-++..+..
T Consensus 86 d~Av~~y~~~~~----~~~~~G~~~~~----~~r~T~V~~--k~----------~g~WkivH~H~S~~~ 134 (143)
T 2f86_B 86 DAACVAYVKLTQ----FLDRNGEAHTR----QSQESRVWS--KK----------QGRWVCVHVHRSTQP 134 (143)
T ss_dssp TEEEEEEEEEEE----EECTTSCEEEE----EEEEEEEEE--EE----------TTEEEEEEEEEEC--
T ss_pred CEEEEEEEeeee----eccCCCCeeeE----EEEEEEEEE--Ee----------CCcEEEEEEeECCCC
Confidence 677777444444 44445654443 134444444 43 256999999876653
No 6
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=83.15 E-value=18 Score=30.25 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
+..+.......+||.+||.+.|..+++++
T Consensus 13 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~d 41 (143)
T 2ux0_A 13 QEIIKITEQLIEAINNGDFEAYTKICDPG 41 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34556666689999999999999988777
No 7
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=82.26 E-value=8.1 Score=33.48 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHH---------HHHH-HHHHhCCC--cccceEEeecceeEEEEEEe
Q 011972 334 FVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERC---------KAEH-TAYQSHGI--FFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 334 Fl~~are~~ipIleAy~~GDle~Lk~~csea~y~~~---------~~~I-k~r~~~G~--~~d~kIL~I~~veLv~ak~~ 401 (474)
=+.+.+.++.....|+..||++.|..++.++..-.| ..+| ..+..... .+...-+.+.++++ +.+.
T Consensus 8 ~~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--I~v~ 85 (145)
T 3soy_A 8 VKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPA--IHVY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTEEEESHHHHHHHCCCCCCCCTEEEEEEEESSCCE--EEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCCcccCHHHHHHHHHHhhhhccccccceEEeeeeE--EEEc
Confidence 345566677778899999999999999866521111 2333 22221111 12233344545442 2445
Q ss_pred CCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeecccc
Q 011972 402 GSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV 470 (474)
Q Consensus 402 e~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~ 470 (474)
++.++++..+.... .....|+.+.+ ...|.-+|+|.. ..+|||+..+-.++
T Consensus 86 gd~A~v~~~~~~~~---~~~~~G~~~~~------~~r~T~V~~r~~---------~ggWkIvh~H~S~~ 136 (145)
T 3soy_A 86 GNAAVAEFDWHFTA---VRRDNGQTQHT------TGRESQVWAKIP---------NTGWRIVHVHYSGP 136 (145)
T ss_dssp TTEEEEEEEEEEEE---EETTTCCEEEE------EEEEEEEEEEET---------TTEEEEEEEEEECC
T ss_pred CCEEEEEEEEEEEE---EEcCCCCeeee------EEEEEEEEEEcC---------CCCEEEEEEecCCC
Confidence 77766554432221 11224543332 344555554521 26799999876443
No 8
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=80.49 E-value=10 Score=32.60 Aligned_cols=110 Identities=12% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHH-------H--HHHHHHHHhCCCcccce-EEeecceeEEEEEEeCCee
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPEVIER-------C--KAEHTAYQSHGIFFDNR-ILHVSEVEVRETKMMGSSP 405 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea~y~~-------~--~~~Ik~r~~~G~~~d~k-IL~I~~veLv~ak~~e~~p 405 (474)
..++..+....+||..||.+.|..+++|++.-. + ...|.++-...+..... .+.++.+++ ..++.+
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~----~~gd~A 95 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRL----LDDDSA 95 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE----CSSSEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEE----ecCCeE
Confidence 445666666889999999999999877654100 0 12333332221111111 223333322 135666
Q ss_pred EEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeeccc
Q 011972 406 IIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLG 469 (474)
Q Consensus 406 vitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g 469 (474)
+++..+... ..+.+|..+ .....|..+|+|. +..|+|+..+-..
T Consensus 96 ~~~~~~~~~----~~~~~G~~~------~~~~r~t~v~~r~----------dG~WkIv~~H~S~ 139 (156)
T 3h51_A 96 VDAGVYTFT----LTDKNGKKS------DVQARYTFVYEKR----------DGKWLIINHHSSA 139 (156)
T ss_dssp EEEEEEEEE----EECTTSCEE------EEEEEEEEEEEEE----------TTEEEEEEEEEEE
T ss_pred EEEEEEEEE----EEcCCCCeE------EEEeEEEEEEEEE----------CCEEEEEEEeecC
Confidence 665555443 234444322 2345777777664 2579999876543
No 9
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=80.04 E-value=25 Score=29.29 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
..+..+....+||..||.+.|..+++++
T Consensus 9 ~I~~l~~~~~~A~~~~D~~~~~~l~a~D 36 (142)
T 3f7s_A 9 EIRQLIERWMQAVRDRDIPGIIAPYADD 36 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 3455556678899999999999988775
No 10
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=79.44 E-value=22 Score=30.32 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
..++.+.....||..||.+.|..+++|+.
T Consensus 20 ~i~~l~~~y~~A~~~~D~d~~~~lf~~Da 48 (143)
T 4i4k_A 20 AVAALPARIVAAWADHDADRFADVFAEDG 48 (143)
T ss_dssp HHHTHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhcCc
Confidence 44556666889999999999998877654
No 11
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=78.90 E-value=7.4 Score=31.31 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
+..........+|+.+||.+.|..+|+|++
T Consensus 6 ~~i~~l~~~~~~A~~~~D~~~l~~l~~~d~ 35 (123)
T 2r4i_A 6 DVILDCEKKLLTAIQNNDVESLEVLLHDDL 35 (123)
T ss_dssp HHHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhhCcCe
Confidence 345556666889999999999999988763
No 12
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=78.68 E-value=38 Score=30.62 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
....+.....+||.+||.+.|..+.+++.
T Consensus 13 ~I~~~~~~~~~A~~~gD~~~l~alwa~d~ 41 (170)
T 3cnx_A 13 QVGLANTAFYEAMERGDFETLSSLWLTPA 41 (170)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHBCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCc
Confidence 34455556789999999999998766654
No 13
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=77.35 E-value=11 Score=31.54 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHH--------HHHHHHHHHhCCCcccceEEeecceeEEEEEEeCC-eeE
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPEVIER--------CKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS-SPI 406 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea~y~~--------~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e~-~pv 406 (474)
+...+.+....+|+.+||.+.|..+|+|++.-. -..-+..... |. .....+ .+.-..+...++ .++
T Consensus 14 ~~I~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~G~~~~~~~~l~~~~~-g~---~~~~~~-~~~~~~v~~~g~d~Av 88 (134)
T 3fsd_A 14 DDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRA-GL---LKLSRL-DLSDAVVRAAGEDGRV 88 (134)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHT-TC---EEEEEE-EEEEEEEEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCCCcCccHHHHHHHHHc-CC---ceEEEE-EEeccEEEEeCCCEEE
Confidence 345666777899999999999999998764311 1222333332 31 122222 223344455666 777
Q ss_pred EEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCC--eEEeeeec
Q 011972 407 IIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPI--WKLREMQQ 467 (474)
Q Consensus 407 itVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~--WrL~eiqq 467 (474)
++.++... ....|....| ..+.+.+|. |. ..+ |+|+..|.
T Consensus 89 v~~~~~~~-----~~~~g~~~~~----~~~~t~vw~--k~----------~g~~gWriv~~h~ 130 (134)
T 3fsd_A 89 VVVRAVTA-----GVYDGEAFTE----TLRFTRIWR--RT----------QGPAGWKLVAGHC 130 (134)
T ss_dssp EEEEEEEE-----EEETTEEEEE----EEEEEEEEE--EE----------TTTTEEEEEEEEE
T ss_pred EEEEEEEE-----EEeCCcEEEE----EEEEEEEEE--EC----------CCCccceEeEeEE
Confidence 77666542 1112322221 235677774 43 246 99998775
No 14
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=74.76 E-value=31 Score=27.58 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHHHH------------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCC
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPEVI------------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS 403 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea~y------------~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e~ 403 (474)
...+..+.....||..||++.|..+++|++. +.+.+-....-..|. .-+.+. ...+...++
T Consensus 6 ~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~----~~~~~~---~~~v~~~gd 78 (129)
T 3hx8_A 6 EAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGI----SELKLT---TLDVQESGD 78 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTC----EEEEEE---EEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCC----ceEEEE---EEEEEcCCC
Confidence 3455566668899999999999998876531 122222333222231 122232 333345677
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeeccccc
Q 011972 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQ 471 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~ 471 (474)
.++++.++... ....+|+.+. ....|+.+|++. + +..|+++--.-+..+
T Consensus 79 ~A~~~~~~~~~----~~~~~G~~~~------~~g~~~~v~~r~-~--------dG~W~i~~~~~~~~~ 127 (129)
T 3hx8_A 79 FAFESGSFSLK----APGKDSKLVD------AAGKYVVVWRKG-Q--------DGGWKLYRDIWNSDP 127 (129)
T ss_dssp EEEEEEEEEEE----EECTTSCEEE------EEEEEEEEEEEC-T--------TSCEEEEEEEEEECC
T ss_pred EEEEEEEEEEE----eeCCCCCeee------eeEEEEEEEEEC-C--------CCcEEEEEeeccccc
Confidence 77777666554 2234453221 245677777553 1 257999876554433
No 15
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=72.59 E-value=32 Score=29.62 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea 364 (474)
.+++.....+||.+||++.|..+.+++
T Consensus 10 ~~~~~~af~~A~~~gD~da~~al~a~d 36 (144)
T 3gwr_A 10 PEAAEDAFYAAFEARSLDDMMAVWARD 36 (144)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCC
Confidence 344445578999999999998877665
No 16
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=71.15 E-value=28 Score=29.43 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
.++..+....+||..||.+.|..+++|++
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da 59 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANV 59 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCe
Confidence 44555666788999999999999888764
No 17
>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=68.53 E-value=32 Score=29.74 Aligned_cols=99 Identities=9% Similarity=0.030 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHhhcCHHHHHH--------HHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEEEEeEE
Q 011972 345 VLSAYMKGDVETLKKYCSPEVIER--------CKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 416 (474)
Q Consensus 345 IleAy~~GDle~Lk~~csea~y~~--------~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e~~pvitVrF~aQqI 416 (474)
-..|..+||.+.|..+++++.... -..-|......|.. ....++..+ ..+.+.++.++++.+....-
T Consensus 18 ~~~A~~~~D~~~L~~LL~ddf~~v~~sG~~~~K~~~L~~~~~~~~~-~~~~~~~~~---~~vr~~gd~AvVt~~~~~~~- 92 (129)
T 3ksp_A 18 RHAYLMEGNREAMHQLLSSDFSFIDGQGRQFDAETYLDHYVDPDQI-QWSNQISES---MVVEVFETTALVQEIVEDHF- 92 (129)
T ss_dssp HHHHHHHTCHHHHHHHEEEEEEEECTTCCEECHHHHHHHHSCTTTE-EEEEEEEEE---EEEEECSSEEEEEEEEEEEE-
T ss_pred HHHHHHhCCHHHHHhhcCCCEEEECCCCCCcCHHHHHHHhccCCCc-cceeecccc---eeEEEECCEEEEEEEEEEEE-
Confidence 667889999999999998875321 13334433333321 122222222 24556677777776655431
Q ss_pred EEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeecc
Q 011972 417 YCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQL 468 (474)
Q Consensus 417 ~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~ 468 (474)
. -.|+.+.|. ..+..+|.. . ..+|+|+.-|-.
T Consensus 93 --~--~~g~~~~~~----~~~t~VW~~--~----------~g~Wrlva~q~T 124 (129)
T 3ksp_A 93 --S--YGRSMYIGR----FRSVSLYHW--A----------NEGWKWHFHQLT 124 (129)
T ss_dssp --E--ETTEEEEEE----EEEEEEEEE--E----------TTEEEEEEEEEE
T ss_pred --e--cCCeEEeEE----EEEEEEEEE--e----------CCeeEEEEEeeE
Confidence 1 134333332 467888843 2 267999987753
No 18
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=68.47 E-value=56 Score=27.98 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHHHH-----------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeE
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPEVI-----------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPI 406 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea~y-----------~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e~~pv 406 (474)
.+..+....+|+..||.+.|..+++|++. ..|.+....... .-.+.+ ..++..+.+.++.++
T Consensus 19 I~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~~~~Gr~ai~a~~~~~~~------~~~~~~-~~~~~~i~v~GD~A~ 91 (139)
T 3rob_A 19 IRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGRLPFGKEEFLAACEQNDQ------RVIIEA-SATFEEIVIVEPMAY 91 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCBCHHHHHHHHHHHHH------HEEEEE-EEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCCCccCHHHHHHHHHHHHH------hcCCCC-ceEEEEEEEcCCeEE
Confidence 34455557788899999999987766543 111111111111 011222 344555566788777
Q ss_pred EEEEEEEeEEEEEEcC-CCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEee
Q 011972 407 IIVAFQTQQIYCVRDK-HGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 407 itVrF~aQqI~~vRDk-~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
++-.+... ..+. .|. .......++++|+|.. +..|+|.-
T Consensus 92 ~~~~~~~~----~t~~~~g~------~~~~~g~~~~v~rK~~---------dG~W~i~~ 131 (139)
T 3rob_A 92 TRTHLHIK----VTPRSGGA------VRELAGHAMSIFRRSM---------FGEWQLAR 131 (139)
T ss_dssp EEEEEEEE----EEETTSCC------CEEEEEEEEEEEEECT---------TSCEEEEE
T ss_pred EEEEEEEE----EecCCCCc------eeEeeccEEEEEEECC---------CCcEEEEE
Confidence 76666654 4443 332 2223556888886621 36799863
No 19
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=61.83 E-value=28 Score=31.19 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHH----------------HHHHHHHHhCCCcc----cceEEeecceeEE
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEVIERC----------------KAEHTAYQSHGIFF----DNRILHVSEVEVR 396 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~y~~~----------------~~~Ik~r~~~G~~~----d~kIL~I~~veLv 396 (474)
.+++.+..-..|++.+|.+.+..+++|++.-.+ ...|.+.-...... ....-.+.++.|
T Consensus 27 ~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~I- 105 (179)
T 3ejv_A 27 IILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPII- 105 (179)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCEE-
Confidence 344455556688899999999998887653111 34455553322221 222222334443
Q ss_pred EEEEeCCeeEEEEEEEEeEEEEEEcCCCC---eecCCC---CceeeEeEEEEEEEecccccCCCCCCCCeEEeeee
Q 011972 397 ETKMMGSSPIIIVAFQTQQIYCVRDKHGT---ITEGGK---DTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 397 ~ak~~e~~pvitVrF~aQqI~~vRDk~Ge---VVEGd~---d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
.+.++.+++++++.........+.+|. ++-|.- .-+..-.|.-.|+|. ..+|++....
T Consensus 106 --~vdgD~A~~~~~~y~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~g~Y~D~~~R~----------dg~Wri~~r~ 169 (179)
T 3ejv_A 106 --VIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTV----------ADGWVISAMR 169 (179)
T ss_dssp --EEETTEEEEEEEEEEEEEEECCCCTTCCCTTCCSCCEEEEEEEEEEEEEEEEEE----------TTEEEEEEEE
T ss_pred --EEcCCeeEEEEEEEEEEEEeeccCCCCCcceeecccccccccccceEEEEEEEE----------CCeEEEEEEE
Confidence 346777755666555444433322331 111111 123344588888775 2569998764
No 20
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=60.72 E-value=32 Score=28.57 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHHHH---------------HHHHHHHHHHhCCCcccceEEeecceeEEEEEEe
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEVIE---------------RCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~y~---------------~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~ 401 (474)
..++.+....+|+..||.+.|+..++|++.- .|...+. ..........-. |..+.+.
T Consensus 13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----i~~i~i~ 84 (128)
T 3blz_A 13 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVID---NVFHPSPEAKAA-----IARIDIV 84 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHH---HTCCCCTTCEEE-----EEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHH---hcCCCCccccCe-----EEEEEEE
Confidence 4455556678999999999999988887432 2222222 110010111111 4455667
Q ss_pred CCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeee
Q 011972 402 GSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 402 e~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
++.+.+.+.+. ...| ....+.|+|.|. +..|+|+...
T Consensus 85 gd~A~a~~~~~-------------~~~~-----~~~~d~~~l~k~----------dg~WkI~~~~ 121 (128)
T 3blz_A 85 GTAASARIDTD-------------DISG-----FRFTDFFNLLKV----------EGKWTVVSKI 121 (128)
T ss_dssp TTEEEEEEEEE-------------EETT-----EEEEEEEEEEEE----------TTEEEEEEEE
T ss_pred CCEEEEEEEEE-------------EcCC-----CceEEeEEEEEE----------CCEEEEEEEE
Confidence 78888877763 0112 245778888775 2579998753
No 21
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=59.37 E-value=63 Score=27.09 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHHH---------------HHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeC
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPEV---------------IERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG 402 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea~---------------y~~~~~~Ik~r~~~G~~~d~kIL~I~~veLv~ak~~e 402 (474)
.++.+....+++.+||.+.|+..++|++ +..|...+.++ +-..... ..|..+.+.+
T Consensus 14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~---~p~~~~~------~~I~~I~i~g 84 (125)
T 3duk_A 14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSN---GPAKNVQ------SRITNIDIVG 84 (125)
T ss_dssp HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHH---CCCTTCE------EEEEEEEEET
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhcc---CCCCccc------ceEEEEEEEC
Confidence 4444444678888999999999988876 24455555544 1111111 1344556677
Q ss_pred CeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEee
Q 011972 403 SSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
+.+.+.|.+.. -. | ..++++.+|.+. +..|+|+.
T Consensus 85 d~A~a~v~~~~--------~~-----~-----~~f~D~l~L~k~----------dg~WkIv~ 118 (125)
T 3duk_A 85 TVAHARVEAEN--------WT-----N-----FKFSDLFLLLKL----------DGKWTIVN 118 (125)
T ss_dssp TEEEEEEEEEC--------SS-----S-----CCEEEEEEEEEE----------TTEEEEEE
T ss_pred CEEEEEEEEEE--------cC-----C-----CeEEEEEEEEEe----------CCEEEEEE
Confidence 77777665421 00 1 356888899775 36799986
No 22
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=58.49 E-value=56 Score=27.21 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhcCHHH--------------HHHHHHHHHHHHhC-CCcccceEEeecceeEEEEEEeCC
Q 011972 339 QEAIRPVLSAYMKGDVETLKKYCSPEV--------------IERCKAEHTAYQSH-GIFFDNRILHVSEVEVRETKMMGS 403 (474)
Q Consensus 339 re~~ipIleAy~~GDle~Lk~~csea~--------------y~~~~~~Ik~r~~~-G~~~d~kIL~I~~veLv~ak~~e~ 403 (474)
++.+..-.+++.+||.+.|+.-++|++ +..|.. +...... +.. +...|..+.+.++
T Consensus 12 ~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~--------~~~~i~~I~i~gd 82 (120)
T 3fka_A 12 TALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIA-MCEDAADAETD--------PFWAISSVSVQGD 82 (120)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCC--------CCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCC--------ceEEEEEEEEECC
Confidence 334444567778899999999988887 456666 6522211 111 1223333444667
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeee
Q 011972 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREM 465 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~ei 465 (474)
.+.+.|.+.- .| ..+.+..+|.+. +..|+|+.-
T Consensus 83 ~A~a~v~~~~--------------~~-----~~f~D~~~L~k~----------dg~WkIv~K 115 (120)
T 3fka_A 83 IAMLHVENDW--------------AG-----MRFDDFLTVLLH----------EGSWRIVSK 115 (120)
T ss_dssp EEEEEEEEEE--------------TT-----EEEEEEEEEEEE----------TTEEEEEEE
T ss_pred EEEEEEEEEc--------------CC-----CceEEEEEEEEe----------CCEEEEEEE
Confidence 7777666321 11 367899999875 367999863
No 23
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=55.02 E-value=59 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhc--CHHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYC--SPEV 365 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~c--sea~ 365 (474)
..+..+....+||.+||++.|-.+. +|++
T Consensus 6 ~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~ 36 (122)
T 3b7c_A 6 DIVQLLKGQEEAWNRGDLDAYMQGYWQNEQL 36 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTBCCSTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCCCE
Confidence 3455555689999999999987754 4543
No 24
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=50.25 E-value=55 Score=27.30 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHH-HHH-------HHHHHHHHHhCCCc-ccce-EEeecceeEEEEEEeCCeeE
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV-IER-------CKAEHTAYQSHGIF-FDNR-ILHVSEVEVRETKMMGSSPI 406 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~-y~~-------~~~~Ik~r~~~G~~-~d~k-IL~I~~veLv~ak~~e~~pv 406 (474)
..++.+....+||..||.+.|-.+++|++ +-. =..+|.++-..-.. +... .+.+.++. +...++.++
T Consensus 4 ~I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~---v~~~gd~A~ 80 (142)
T 2gxf_A 4 QLKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMI---LLEAGDTVL 80 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEE---EEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCCcccCHHHHHHHHHHHHHhhCCCceEEEEEEE---EEEcCCEEE
Confidence 34566666889999999999988877743 200 02334333322111 0011 11122222 334567777
Q ss_pred EEEEEEEeEEEEEEcCCCCeecCCCCceeeEeEEEEEEEecccccCCCCCCCCeEEeeeecccc
Q 011972 407 IIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV 470 (474)
Q Consensus 407 itVrF~aQqI~~vRDk~GeVVEGd~d~i~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~ 470 (474)
++..+... .+.+| .+- .....|+.+|++.. +..|+++-=.-.|.
T Consensus 81 ~~~~~~~~-----~~~~G-----~~~-~~~g~~t~v~~r~~---------dG~Wri~~d~~~~~ 124 (142)
T 2gxf_A 81 VLSQTLLD-----SDKKD-----SEY-AMERRATYVFKKNA---------QGEWLCVIDNSYGT 124 (142)
T ss_dssp EEEEEECC-----C---------------EEEEEEEEEECT---------TSCEEEEEEETTGG
T ss_pred EEEEEEEE-----ECCCC-----CeE-eeeEEEEEEEEECC---------CCCEEEEEECCCCc
Confidence 76665531 12333 321 13456788886621 25699876555444
No 25
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=47.17 E-value=1.1e+02 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
.+++.+....+||..||.+.|..+++|+
T Consensus 12 ~i~~~~~~~~~a~~~~D~~~~~~l~a~D 39 (135)
T 3d9r_A 12 VIEAAAIAYLTAFNRADIPAVIATYTDD 39 (135)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 3555666678899999999999887765
No 26
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=45.34 E-value=1.2e+02 Score=24.67 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 335 VSEVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 335 l~~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
+..+...|.....|+..||++.|..+.+++
T Consensus 13 ~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d 42 (129)
T 2rcd_A 13 LADVTAAFYRYEKALTGNDVAVLDELFWHD 42 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCS
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhccCC
Confidence 455666666677999999999999988876
No 27
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=40.18 E-value=70 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
.++.+....+||..||++.|..+|+|++
T Consensus 5 ~~~~v~~~~~~~~~~d~~~~~~~~a~d~ 32 (128)
T 3ehc_A 5 LNDIYLAYLDSLNHQAFDELGTFVDDNV 32 (128)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCcce
Confidence 3556666778999999999999998754
No 28
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=35.15 E-value=2.1e+02 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 336 SEVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 336 ~~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
...+..+.....||..||.+.+..+.+++
T Consensus 16 ~aI~~~~~~~~~A~~~~D~d~~~~lfa~D 44 (172)
T 3cu3_A 16 SAIRAFHRQMIDAWNRGSGEGFAAPFSET 44 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 34556666688999999999999876665
No 29
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=33.70 E-value=1.7e+02 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea 364 (474)
.++.+....+||..||++.|..+++|+
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D 32 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPD 32 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 455666678899999999999998764
No 30
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=32.91 E-value=1.9e+02 Score=24.44 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHhhcCHH
Q 011972 337 EVQEAIRPVLSAYMK-GDVETLKKYCSPE 364 (474)
Q Consensus 337 ~are~~ipIleAy~~-GDle~Lk~~csea 364 (474)
.+++.+.....|+.. ||.+.+..+++|+
T Consensus 29 ~I~~l~~~y~~alD~~~D~d~~~~lfteD 57 (163)
T 3b8l_A 29 AIQDLMIAYAHAVDTVSDIDAVLDVFTED 57 (163)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHhhcCCC
Confidence 344444456778889 9999998877664
No 31
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=32.69 E-value=2.1e+02 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
..++.+...++||.+||.+.|..++++++
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~ 34 (128)
T 3en8_A 6 KIREALNAHWQASAAGDFDAEHDIYDDDA 34 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHTTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCE
Confidence 34556666889999999999999988654
No 32
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=32.18 E-value=12 Score=31.76 Aligned_cols=32 Identities=3% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 334 FVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 334 Fl~~are~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
=+..++++|...++|+..||.+.|..+++|++
T Consensus 10 ~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~ 41 (134)
T 3dmc_A 10 TLKVAHQGFEFFTQGLATGEWQKFLDMLTEDF 41 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCE
Confidence 35677888888999999999999998887653
No 33
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=29.84 E-value=2.4e+02 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 339 QEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 339 re~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
+..+....+||.+||++.|..+|+|++
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv 33 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNI 33 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCe
Confidence 344455778999999999999987664
No 34
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=29.82 E-value=2.6e+02 Score=23.72 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 338 VQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 338 are~~ipIleAy~~GDle~Lk~~csea 364 (474)
+++.+..-..|+..+|.+.+..+++|+
T Consensus 16 I~~l~~~y~~a~D~~D~~~~~~lf~~D 42 (170)
T 2chc_A 16 IQALCARYCLTINTQDGEGWAGCFTED 42 (170)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHhcccCc
Confidence 334444456888899999999877655
No 35
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=29.39 E-value=1.1e+02 Score=26.11 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH-HHHcCCHHHHHhhcCHHH
Q 011972 337 EVQEAIRPVLS-AYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 337 ~are~~ipIle-Ay~~GDle~Lk~~csea~ 365 (474)
.-++.+...++ ||..||++.|..||+|+.
T Consensus 28 ~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~ 57 (148)
T 3g0k_A 28 ANHDLVIEMYNKVLIAMDSSAVDRYIAPGY 57 (148)
T ss_dssp HHHHHHHHHHHHTTTTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCcCe
Confidence 34555666666 899999999999998764
No 36
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=27.63 E-value=20 Score=29.65 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhcCHHH
Q 011972 339 QEAIRPVLSAYMKGDVETLKKYCSPEV 365 (474)
Q Consensus 339 re~~ipIleAy~~GDle~Lk~~csea~ 365 (474)
++.....++||..||++.|..+|+|++
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dv 35 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENF 35 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 445555789999999999999998865
No 37
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=26.67 E-value=2.7e+02 Score=22.93 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCHH
Q 011972 337 EVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (474)
Q Consensus 337 ~are~~ipIleAy~~GDle~Lk~~csea 364 (474)
.+++.+..-..|+..||.+.+..+++|+
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~D 47 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVED 47 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCc
Confidence 3444555567888899999999877764
No 38
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.04 E-value=92 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHhhhChhhHHHHHHHHHHHHHH
Q 011972 56 IKGEAESNPEFKHSVKELKKKAEEI 80 (474)
Q Consensus 56 ik~E~~kn~E~qe~ik~l~e~a~kl 80 (474)
+++|..| |-+.-|+|-+++.+|
T Consensus 4 lreeaak---lfeewkklaeeaakl 25 (62)
T 2i7u_A 4 LREEAAK---LFEEWKKLAEEAAKL 25 (62)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444443 344556666666665
No 39
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.57 E-value=5.2e+02 Score=24.85 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHHHHhh
Q 011972 86 ELKERTKQTTEQLYKQV 102 (474)
Q Consensus 86 ~lk~r~~~~a~~~~k~v 102 (474)
.|+.|+..-++.+...+
T Consensus 70 elr~kL~p~~~el~~~l 86 (273)
T 3s84_A 70 QLRRQLTPYAQRMERVL 86 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45554444444444433
No 40
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.04 E-value=1e+02 Score=21.70 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHH
Q 011972 64 PEFKHSVKELKKKAEEIKGVKEELK 88 (474)
Q Consensus 64 ~E~qe~ik~l~e~a~kl~~~~e~lk 88 (474)
+||+.-|.+|.+.-.+|+.-+|-||
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 5788888888888888888777665
No 41
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.73 E-value=38 Score=29.99 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=36.6
Q ss_pred cccccChHHHHHHHHHhcC----CCCC---hhhHHHHHHHHHHHHHHHHHcC--CHHHHHhhcC
Q 011972 308 TIFQETDAAASIKEIRRRD----PSFS---LPDFVSEVQEAIRPVLSAYMKG--DVETLKKYCS 362 (474)
Q Consensus 308 ~lf~ete~a~al~eIk~~D----PsFd---~~~Fl~~are~~ipIleAy~~G--Dle~Lk~~cs 362 (474)
++|.+.=....+.+|+.++ |+|- ...|+..+.+.+..|-.|...| |.+.|....+
T Consensus 16 ~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 16 SMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp HHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 3343333334466666653 4443 2678888888888899999998 9888865543
Done!