Query 011974
Match_columns 474
No_of_seqs 322 out of 1313
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 2.9E-47 9.8E-52 378.8 16.2 259 146-466 4-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 3.7E-42 1.3E-46 346.9 15.4 251 148-459 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 1.4E-27 4.8E-32 243.1 7.1 226 146-460 3-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 1.1E-25 3.9E-30 221.9 8.1 136 269-446 82-224 (263)
5 3oaa_G ATP synthase gamma chai 24.8 4.6E+02 0.016 25.0 10.9 55 32-105 3-57 (286)
6 1o7q_A N-acetyllactosaminide a 18.9 2.5E+02 0.0086 27.3 7.2 123 277-415 132-261 (289)
7 2akf_A Coronin-1A; coiled coil 17.5 86 0.0029 19.9 2.3 21 71-91 10-30 (32)
8 1fo8_A Alpha-1,3-mannosyl-glyc 13.8 81 0.0028 31.4 2.4 39 267-305 81-121 (343)
9 1i4d_A Arfaptin 2, partner of 13.3 5.8E+02 0.02 23.7 8.0 66 57-131 8-73 (224)
10 1iap_A Guanine nucleotide exch 11.6 18 0.0006 33.7 -3.0 37 159-196 17-56 (211)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=2.9e-47 Score=378.76 Aligned_cols=259 Identities=16% Similarity=0.199 Sum_probs=183.2
Q ss_pred CcceEEEeeCCCc--chHHHHHHHHHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchh
Q 011974 146 SYFHYVLASDNVL--ATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPV 223 (474)
Q Consensus 146 ~~ihIv~~sDn~l--a~sV~I~Sil~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~ 223 (474)
-.+|||+++|+.| +++|+|+|++.|+++ ++++|||++++++.+.++..
T Consensus 4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L----------------------------- 53 (276)
T 3tzt_A 4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDL----------------------------- 53 (276)
T ss_dssp -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHH-----------------------------
T ss_pred eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHH-----------------------------
Confidence 4589999999877 599999999999986 67999999999998765421
Q ss_pred HHhhhhccceeEEeecCcccccccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCC-CCCeEEEEecCeeeecCchh
Q 011974 224 LEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFP-SLNKVVFLDDDLVVQTDLSP 302 (474)
Q Consensus 224 L~~l~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp-~ldKVLYLD~DvIV~~DL~e 302 (474)
+++.......+.|.... ++.+. .+ ...+++|..+|+||++|++|| +++||||||+|+||++||++
T Consensus 54 -~~~~~~~~~~i~~~~~~----------~~~~~-~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~ 119 (276)
T 3tzt_A 54 -GEDLKKFSYTLYPIRAT----------DDLFS-FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDD 119 (276)
T ss_dssp -HHHHHTTTCEEEEEECC--------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHH
T ss_pred -HHHHHHcCCEEEEEEeC----------HHHHh-cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHH
Confidence 11111112233443211 11111 11 123578999999999999999 79999999999999999999
Q ss_pred hhhcCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhc
Q 011974 303 LWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNL 382 (474)
Q Consensus 303 Lw~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~ 382 (474)
||++|++|+++|||+||.... ..+..+.. ++++..+|||||||||||++||+.+++++++++++++.
T Consensus 120 L~~~dl~~~~~aav~d~~~~~----~~~~~~~~---------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~ 186 (276)
T 3tzt_A 120 LLRTDISDYILAAASHTGKTD----MANNVNRI---------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH 186 (276)
T ss_dssp HHTCCCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-
T ss_pred HhhcCCCCCeEEEEEecccch----HHHHHHHh---------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc
Confidence 999999999999999986431 01111111 23344599999999999999999999999999999875
Q ss_pred cCCCccCCcCCCchhhhhcCCcEEEeCC-ccccccCCCCC------C--cc-ccccCCCeEEEecCCCCCccCCCCCCCH
Q 011974 383 KSDLSLWQLGTLPPGLIAFHGHVHVIDP-FWHMLGLGYQE------N--TS-FADAESAGVIHFNGRAKPWLDIAFPKLR 452 (474)
Q Consensus 383 ~~~~~~~dqd~Ln~~l~~f~~~i~~L~~-~WN~~~lg~~~------~--~~-~~~~~~~~IIHy~G~~KPW~~~~~~~y~ 452 (474)
. .+.+.|||.|| .+|++++++||. +||+++. +.. . .+ .+..++|+||||+|..|||...+.++|+
T Consensus 187 ~-~~~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~ 261 (276)
T 3tzt_A 187 M-NLLLPDQDILN---AMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFT 261 (276)
T ss_dssp --------CHHHH---HHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTH
T ss_pred c-cccCCChhHHH---HHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchH
Confidence 3 46788999776 789999999998 9999862 210 1 11 1245689999999999999999889999
Q ss_pred HHHHHHHccchhhh
Q 011974 453 PLWSKYINFSDKFI 466 (474)
Q Consensus 453 ~~W~~Yl~~~~~~l 466 (474)
++||+|++..+++|
T Consensus 262 ~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 262 SLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999987
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=3.7e-42 Score=346.94 Aligned_cols=251 Identities=21% Similarity=0.308 Sum_probs=186.1
Q ss_pred ceEEEeeCCCc--chHHHHHHH-HHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchhH
Q 011974 148 FHYVLASDNVL--ATSVVATSL-VKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVL 224 (474)
Q Consensus 148 ihIv~~sDn~l--a~sV~I~Si-l~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~L 224 (474)
||||+++|+.| +++|+|+|+ +.|++ .+++|||++++++.+.++..-.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~---------------------------- 50 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAA---------------------------- 50 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHH----------------------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHH----------------------------
Confidence 69999999876 589999999 88874 4699999999999876542110
Q ss_pred HhhhhccceeEEeecCcccccccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCCCCCeEEEEecCeeeecCchhhh
Q 011974 225 EAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLW 304 (474)
Q Consensus 225 ~~l~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp~ldKVLYLD~DvIV~~DL~eLw 304 (474)
+.......+.|.... +..+ ..+. ...+++|..+|+||++|++||+++||||||+|+||++||++||
T Consensus 51 --~~~~~~~~i~~~~~~----------~~~~-~~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~ 116 (311)
T 1g9r_A 51 --NLRGGGGNIRFIDVN----------PEDF-AGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116 (311)
T ss_dssp --HSGGGTTTEEEEECC----------GGGG-TTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHH
T ss_pred --HHHHcCCEEEEEEcC----------HHHH-hcCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHh
Confidence 000001122222110 0000 0111 1136789999999999999999999999999999999999999
Q ss_pred hcCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhccC
Q 011974 305 DIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKS 384 (474)
Q Consensus 305 ~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~~ 384 (474)
++|++|+++|||+||.... ...+.+.++ +.+..+||||||||||+++||+.+++++++++++++..
T Consensus 117 ~~~l~~~~~aav~d~~~~~----~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~- 182 (311)
T 1g9r_A 117 DTDLGDNWLGASIDLFVER----QEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD- 182 (311)
T ss_dssp TCCCTTCSEEEEECHHHHT----STTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-
T ss_pred ccCCCCcEEEEEeccchhh----hHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccC-
Confidence 9999999999999985310 122333333 33456899999999999999999999999999998753
Q ss_pred CCccCCcCCCchhhhhcCCcEEEeCCccccccCCCC------C-C--c----c-ccccCCCeEEEecCCCCCccCCCCCC
Q 011974 385 DLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQ------E-N--T----S-FADAESAGVIHFNGRAKPWLDIAFPK 450 (474)
Q Consensus 385 ~~~~~dqd~Ln~~l~~f~~~i~~L~~~WN~~~lg~~------~-~--~----~-~~~~~~~~IIHy~G~~KPW~~~~~~~ 450 (474)
...+.|||.|| .+|.++++.||.+||++..++. . . . . .+..++++||||+|+.|||...+.++
T Consensus 183 ~~~~~DQd~lN---~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~ 259 (311)
T 1g9r_A 183 VMQYQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW 259 (311)
T ss_dssp TCSSHHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCST
T ss_pred cCccCCcCHHH---HHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCc
Confidence 46788999776 6899999999999999853210 0 0 0 0 12335789999999999999988778
Q ss_pred CHHHHHHHH
Q 011974 451 LRPLWSKYI 459 (474)
Q Consensus 451 y~~~W~~Yl 459 (474)
++++|.++.
T Consensus 260 ~~~~~~~~~ 268 (311)
T 1g9r_A 260 GAERFTELA 268 (311)
T ss_dssp TTHHHHHHH
T ss_pred cHHHHHHHH
Confidence 887777665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=1.4e-27 Score=243.13 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=150.1
Q ss_pred CcceEEEeeCCCc--chHHHHHHHHHhCCCCCcEEEEEEeCCCCchhhhhhhhcCCCCchhhhhhhcccccccccCCchh
Q 011974 146 SYFHYVLASDNVL--ATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPV 223 (474)
Q Consensus 146 ~~ihIv~~sDn~l--a~sV~I~Sil~n~~~p~~i~FHIitd~~s~~~~~~wf~~~~~~~a~v~v~~l~~f~~l~~~~~p~ 223 (474)
+..+|++++|+.| ++.|++.|+..|++. ..++| +++++++.+..+..-...
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~------------------------- 55 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF------------------------- 55 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC-------------------------
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC-------------------------
Confidence 3568888888766 588899999999865 44555 677788766544211000
Q ss_pred HHhhhhccceeEEeecCcccccccCCCChHHHHHHhhccCCCCcchhHHHHHhhcccCCCCCeEEEEecCeeeecCchhh
Q 011974 224 LEAMEKDQRVRAQFRGGSSAIVANNTEKPYVIAAKLQALSPKYNSLMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPL 303 (474)
Q Consensus 224 L~~l~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~S~~~y~R~~ipellp~ldKVLYLD~DvIV~~DL~eL 303 (474)
..+.+.... . . ..+..+ ..++ ++ .+..+|+||++|++ ++++||||||+|+||.+||++|
T Consensus 56 ---------~~v~~v~~l----~-~-~~~~~~-~~~~--~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 56 ---------DEVITVDIL----D-S-GDSAHL-TLMK--RP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp ---------SEEEECCTT----S-T-TSTTHH-HHHH--CG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGG
T ss_pred ---------CEEEEEeec----C-C-cchhhc-cccc--cc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHH
Confidence 000000000 0 0 000000 0111 11 24689999999996 7899999999999999999999
Q ss_pred hhcCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCCCCCCcccceEEEecHHHHhhhHHHHHHHHHHHhcc
Q 011974 304 WDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDPNECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLK 383 (474)
Q Consensus 304 w~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~ 383 (474)
|+++ .+|||+|.+ + .+||||||||||++. ...++++++++++.
T Consensus 115 f~~~----~~aAv~d~~----------------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~- 157 (333)
T 1ll2_A 115 FERE----ELSAAPDPG----------------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG- 157 (333)
T ss_dssp GGSC----SSEEEECSS----------------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC-
T ss_pred hCCC----ceeEEecCC----------------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC-
Confidence 9986 478888742 1 148999999998863 34466777777643
Q ss_pred CCCccCCcCCCchhhhhcCCcE-----EEeCCccccccC-CCCCCcc-ccccCCCeEEEecCCCCCccCCCCC-------
Q 011974 384 SDLSLWQLGTLPPGLIAFHGHV-----HVIDPFWHMLGL-GYQENTS-FADAESAGVIHFNGRAKPWLDIAFP------- 449 (474)
Q Consensus 384 ~~~~~~dqd~Ln~~l~~f~~~i-----~~L~~~WN~~~l-g~~~~~~-~~~~~~~~IIHy~G~~KPW~~~~~~------- 449 (474)
...+.|||.|| .+|.+.+ ..||.+||++.. +|..... ....++|+||||+|..|||.....+
T Consensus 158 -~~~~~DQ~~LN---~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~ 233 (333)
T 1ll2_A 158 -SFDGGDQGLLN---TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRS 233 (333)
T ss_dssp -CTTSSHHHHHH---HHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC-
T ss_pred -CCCCCCHHHHH---HHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCcccccc
Confidence 46678999887 5677643 789999999853 2322111 1235689999999999999876322
Q ss_pred ----------CCHHHHHHHHc
Q 011974 450 ----------KLRPLWSKYIN 460 (474)
Q Consensus 450 ----------~y~~~W~~Yl~ 460 (474)
++.+.||.+.+
T Consensus 234 ~~~~~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 234 EGHDPTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp -------CCHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHH
Confidence 34678998754
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=1.1e-25 Score=221.89 Aligned_cols=136 Identities=19% Similarity=0.258 Sum_probs=107.5
Q ss_pred hhHHHHHhhcccCCCCCeEEEEecCeeeecCchhhhhcCCCCCeeEeeecccCCCcccchhhhhhhccCCCcccccCCCC
Q 011974 269 LMNHIRIHLPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNFSHPLISRNFDP 348 (474)
Q Consensus 269 ~~~y~R~~ipellp~ldKVLYLD~DvIV~~DL~eLw~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~ 348 (474)
..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||+|.+ +
T Consensus 82 ~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~----------------~----------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG----------------W----------- 129 (263)
T ss_dssp GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT----------------S-----------
T ss_pred hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCC----------------C-----------
Confidence 4688999999987 5899999999999999999999987 478888742 1
Q ss_pred CCCCcccceEEEecHHHHhhhHHHHHHHHHHHhccCCCccCCcCCCchhhhhcCC-----cEEEeCCcccccc-CCCCCC
Q 011974 349 NECAWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSDLSLWQLGTLPPGLIAFHG-----HVHVIDPFWHMLG-LGYQEN 422 (474)
Q Consensus 349 ~~~yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~~~~~~~dqd~Ln~~l~~f~~-----~i~~L~~~WN~~~-lg~~~~ 422 (474)
..||||||||||++ .++.++++++++++. ...+.|||+|| .+|.+ .++.||.+||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~----~~~~~~l~~~~~~~~--~~~~~DQd~LN---~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPS----VETYNQLLHLASEQG--SFDGGDQGILN---TFFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCC----HHHHHHHHHHHHHHC--CTTSSHHHHHH---HHTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEccc----HHHHHHHHHHHHhcC--CCCcccHHHHH---HHhccccccCeeEeCCcccccccchhcccc
Confidence 14899999999986 356777888887653 46788999887 67877 7899999999974 233322
Q ss_pred ccc-cccCCCeEEEecCCCCCccCC
Q 011974 423 TSF-ADAESAGVIHFNGRAKPWLDI 446 (474)
Q Consensus 423 ~~~-~~~~~~~IIHy~G~~KPW~~~ 446 (474)
... +..++++||||+|..|||...
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCC
Confidence 111 235689999999999999874
No 5
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=24.82 E-value=4.6e+02 Score=25.04 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHHHhCccccccCCCCCChhhhHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011974 32 PEVIYQILEEPMSKDELKGRSDIPQTLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVAS 105 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~ 105 (474)
+||++++++. .++..+..+.||-.- +.|||..-..++.-.--+.+=...+.++++
T Consensus 3 lkeIk~RI~S-------------vk~t~kITkAMkmVA------aaKlrkaq~~~~~~rpY~~~i~~~l~~l~~ 57 (286)
T 3oaa_G 3 AKEIRSKIAS-------------VQNTQKITKAMEMVA------ASKMRKSQDRMAASRPYAETMRKVIGHLAH 57 (286)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 4788888887 566777777776553 455655555555444444444455666665
No 6
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=18.87 E-value=2.5e+02 Score=27.29 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=71.1
Q ss_pred hcccCCCCCeEEEEecCeeeecCchhhhhcCCCCCeeEeeecccCCCcccchhhhhhhccC-CCc----ccccCCCCCCC
Q 011974 277 LPEMFPSLNKVVFLDDDLVVQTDLSPLWDIDMNGKVNGAVATCRGDDKFVMSKTLKSYLNF-SHP----LISRNFDPNEC 351 (474)
Q Consensus 277 ipellp~ldKVLYLD~DvIV~~DL~eLw~~Dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~-s~p----~i~~~~~~~~~ 351 (474)
..+++.++|-+.++|+|+++++++..= .| |..+|+..--.-. +-+..+.+ .+| .| .++.+..
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~-------~~~~~fpYERrp~S~AyI--p~~eGdf 198 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYK-------ADPNDFTYERRKESAAYI--PFGEGDF 198 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTT-------SCGGGSCCCCCTTSTTCC--CTTCCSC
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhC-------CCCCCCCCCCCcCceeee--cCCCCCE
Confidence 355677899999999999999988641 12 4566665543211 00111111 111 12 2456788
Q ss_pred CcccceEEEecHHHHhhhHHHHHHHHHHHhccCC--CccCCcCCCchhhhhcCCcEEEeCCccccc
Q 011974 352 AWAYGMNIFDLEAWRKTNISQTYHYWLEQNLKSD--LSLWQLGTLPPGLIAFHGHVHVIDPFWHML 415 (474)
Q Consensus 352 yfNsGVlLinL~~wR~~~it~~~~~~l~~~~~~~--~~~~dqd~Ln~~l~~f~~~i~~L~~~WN~~ 415 (474)
|+.+|++==-.++-- ++++.+.+-+..-...+ -..+|-.-||-.. ..+..++.|++.|.+.
T Consensus 199 YY~Ga~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 199 YYHAAIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp CEEEEEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred EEEceeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 999998754444433 35666666554422111 2344555577542 3466778899999875
No 7
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=17.46 E-value=86 Score=19.91 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 011974 71 DAKTFAIKLRDMVTLMEQRTR 91 (474)
Q Consensus 71 ~~~~~~~kl~~~~~~~e~~~~ 91 (474)
..++++++|..-++.+||-++
T Consensus 10 ~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888888887765
No 8
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=13.82 E-value=81 Score=31.36 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=30.2
Q ss_pred cchhHHHHHhhcccCC--CCCeEEEEecCeeeecCchhhhh
Q 011974 267 NSLMNHIRIHLPEMFP--SLNKVVFLDDDLVVQTDLSPLWD 305 (474)
Q Consensus 267 ~S~~~y~R~~ipellp--~ldKVLYLD~DvIV~~DL~eLw~ 305 (474)
..++.+++--+-.+|. ..++||+||+|+++--|.=+.++
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 3455667777777776 68999999999999999765554
No 9
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=13.27 E-value=5.8e+02 Score=23.70 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhhHhHHHHhhchHhhh
Q 011974 57 TLEEFMADMKESKSDAKTFAIKLRDMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARL 131 (474)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~ 131 (474)
.++..|...++.+-=|..+.+-.++++...-+-++.++.=+.++..+|.+. |. +..++-.++...+
T Consensus 8 EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~-p~--------l~~~f~~~~~~~r 73 (224)
T 1i4d_A 8 ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKS-PE--------LQEEFGYNAETQK 73 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-GG--------GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cH--------HHHHHHHHHHHHH
Confidence 456667777788888999999999999999999999999999999999986 53 5566665555544
No 10
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=11.62 E-value=18 Score=33.75 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhCCCCCcEEEEEEeCC---CCchhhhhhhh
Q 011974 159 ATSVVATSLVKNSLHPAKIVLHIITDR---KTYYPMQAWFS 196 (474)
Q Consensus 159 a~sV~I~Sil~n~~~p~~i~FHIitd~---~s~~~~~~wf~ 196 (474)
+++|-|+=++.|+ +|..+-||++||- .+...|++||.
T Consensus 17 HLaVFL~yV~sq~-DPspLLfYL~tdlYk~~~~Ke~rk~~~ 56 (211)
T 1iap_A 17 HLMALLQHVALQF-EPGPLLCCLHADMLGSLGPKEAKKAFL 56 (211)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CchhhHHHHHHHHHhccChHHHHHHHH
Confidence 3899999999987 7799999999983 57778888874
Done!