Query 011975
Match_columns 474
No_of_seqs 421 out of 4122
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.9E-37 2.2E-41 289.2 25.2 173 125-329 102-278 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 1.4E-35 3E-40 254.9 21.4 182 128-331 60-243 (321)
3 KOG0117 Heterogeneous nuclear 100.0 6.6E-34 1.4E-38 260.9 28.7 198 128-333 81-338 (506)
4 TIGR01645 half-pint poly-U bin 100.0 4E-33 8.7E-38 277.5 24.2 179 128-327 105-285 (612)
5 KOG0144 RNA-binding protein CU 100.0 1.8E-31 4E-36 243.7 18.1 170 126-327 30-207 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-30 7.1E-35 251.7 23.6 201 128-328 87-351 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 2.8E-30 6.2E-35 266.6 22.4 185 127-327 175-365 (562)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-29 4.8E-34 245.9 26.9 166 130-327 3-172 (352)
9 TIGR01622 SF-CC1 splicing fact 100.0 5.4E-30 1.2E-34 258.7 21.4 182 125-326 84-266 (457)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 3.8E-29 8.2E-34 249.0 25.2 193 128-329 56-310 (578)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1E-28 2.2E-33 255.1 19.3 164 132-326 2-167 (562)
12 KOG0127 Nucleolar protein fibr 100.0 4.1E-28 9E-33 227.9 17.2 196 130-326 117-378 (678)
13 KOG0145 RNA-binding protein EL 100.0 4.7E-28 1E-32 207.2 15.2 202 125-326 122-358 (360)
14 KOG0131 Splicing factor 3b, su 100.0 2.8E-28 6.1E-33 198.1 12.5 170 130-330 9-181 (203)
15 KOG0127 Nucleolar protein fibr 100.0 1.2E-27 2.5E-32 224.9 16.5 193 131-330 6-200 (678)
16 KOG0145 RNA-binding protein EL 99.9 9.5E-27 2.1E-31 199.2 15.8 169 126-326 37-209 (360)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.8E-26 1.5E-30 232.2 20.9 193 125-327 170-376 (509)
18 KOG4205 RNA-binding protein mu 99.9 1.3E-25 2.8E-30 206.3 20.1 175 129-329 5-179 (311)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.9E-25 4.2E-30 224.8 21.1 192 127-325 272-479 (481)
20 KOG0124 Polypyrimidine tract-b 99.9 3.2E-26 7E-31 204.9 12.9 179 128-327 111-291 (544)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.2E-25 4.8E-30 224.4 20.3 167 130-326 2-174 (481)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.6E-25 7.9E-30 226.8 21.3 192 130-325 295-501 (509)
23 KOG0109 RNA-binding protein LA 99.9 6.2E-25 1.4E-29 191.4 11.8 148 132-329 4-153 (346)
24 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-23 6E-28 209.9 21.9 194 128-325 184-447 (457)
25 KOG0110 RNA-binding protein (R 99.9 3.9E-24 8.4E-29 208.0 12.2 173 132-327 517-694 (725)
26 KOG0146 RNA-binding protein ET 99.9 2.1E-24 4.6E-29 185.5 8.9 199 129-328 18-367 (371)
27 KOG0123 Polyadenylate-binding 99.9 8.4E-23 1.8E-27 195.1 16.1 151 132-328 3-155 (369)
28 KOG0144 RNA-binding protein CU 99.9 4.4E-23 9.6E-28 189.1 11.2 199 129-328 123-506 (510)
29 KOG0147 Transcriptional coacti 99.9 1.2E-23 2.5E-28 199.4 6.5 192 121-330 170-362 (549)
30 KOG0148 Apoptosis-promoting RN 99.9 8.1E-22 1.7E-26 170.3 10.4 139 128-327 4-143 (321)
31 KOG4211 Splicing factor hnRNP- 99.9 9.2E-20 2E-24 170.8 24.5 174 127-325 7-181 (510)
32 KOG0123 Polyadenylate-binding 99.8 2.2E-20 4.9E-25 178.5 14.7 170 128-325 74-245 (369)
33 PLN03134 glycine-rich RNA-bind 99.8 7.8E-20 1.7E-24 152.0 14.3 84 245-328 32-116 (144)
34 TIGR01645 half-pint poly-U bin 99.8 4.4E-19 9.5E-24 177.5 20.6 80 129-208 203-283 (612)
35 KOG4206 Spliceosomal protein s 99.8 2.9E-18 6.4E-23 146.0 15.8 188 129-324 8-220 (221)
36 KOG0147 Transcriptional coacti 99.8 1.1E-18 2.4E-23 165.8 12.2 190 131-325 279-527 (549)
37 KOG4212 RNA-binding protein hn 99.8 6.1E-18 1.3E-22 155.6 15.8 195 128-324 42-292 (608)
38 KOG0105 Alternative splicing f 99.8 8.8E-17 1.9E-21 131.4 18.4 178 128-321 4-185 (241)
39 KOG1548 Transcription elongati 99.8 1.3E-17 2.7E-22 149.6 14.7 194 128-326 132-352 (382)
40 PLN03134 glycine-rich RNA-bind 99.7 1.6E-17 3.4E-22 138.2 11.5 84 128-211 32-116 (144)
41 KOG0149 Predicted RNA-binding 99.7 3.2E-17 6.9E-22 139.9 11.9 86 245-330 10-95 (247)
42 KOG4211 Splicing factor hnRNP- 99.7 6.3E-16 1.4E-20 145.3 19.9 192 129-323 102-355 (510)
43 KOG0110 RNA-binding protein (R 99.7 1.6E-16 3.5E-21 155.3 13.4 193 126-324 381-596 (725)
44 KOG0149 Predicted RNA-binding 99.7 4E-17 8.7E-22 139.3 8.0 84 128-211 10-93 (247)
45 KOG1457 RNA binding protein (c 99.7 7.9E-16 1.7E-20 129.7 13.4 179 128-310 32-269 (284)
46 KOG1190 Polypyrimidine tract-b 99.6 9.8E-15 2.1E-19 133.8 16.4 187 130-325 297-490 (492)
47 TIGR01659 sex-lethal sex-letha 99.6 1.3E-15 2.9E-20 145.1 10.3 84 243-326 103-187 (346)
48 KOG0106 Alternative splicing f 99.6 8.7E-16 1.9E-20 132.6 7.9 165 131-323 2-168 (216)
49 KOG0122 Translation initiation 99.6 1.5E-15 3.3E-20 130.1 9.1 81 246-326 188-269 (270)
50 KOG1365 RNA-binding protein Fu 99.6 6.5E-16 1.4E-20 140.1 5.8 192 130-325 161-361 (508)
51 KOG0122 Translation initiation 99.6 4.4E-15 9.6E-20 127.2 9.4 80 129-208 188-268 (270)
52 PF00076 RRM_1: RNA recognitio 99.6 5.5E-15 1.2E-19 108.0 7.8 69 250-319 1-70 (70)
53 COG0724 RNA-binding proteins ( 99.6 2E-14 4.2E-19 136.2 13.7 169 130-308 115-286 (306)
54 KOG0124 Polypyrimidine tract-b 99.6 4.6E-14 1E-18 127.3 14.9 195 128-322 208-531 (544)
55 PF00076 RRM_1: RNA recognitio 99.6 1E-14 2.2E-19 106.6 7.9 69 133-202 1-70 (70)
56 KOG4207 Predicted splicing fac 99.6 1.2E-14 2.6E-19 121.2 8.7 83 244-326 10-93 (256)
57 KOG0120 Splicing factor U2AF, 99.6 1.9E-14 4.1E-19 139.2 10.6 187 130-324 289-490 (500)
58 KOG0121 Nuclear cap-binding pr 99.5 1E-14 2.3E-19 112.0 6.7 80 246-325 35-115 (153)
59 KOG4212 RNA-binding protein hn 99.5 1.7E-13 3.7E-18 126.6 15.7 73 246-323 535-608 (608)
60 PF14259 RRM_6: RNA recognitio 99.5 2.5E-14 5.5E-19 104.4 8.0 69 133-202 1-70 (70)
61 KOG0121 Nuclear cap-binding pr 99.5 1.3E-14 2.9E-19 111.4 6.6 80 128-207 34-114 (153)
62 PF14259 RRM_6: RNA recognitio 99.5 2.4E-14 5.3E-19 104.5 7.5 69 250-319 1-70 (70)
63 PLN03120 nucleic acid binding 99.5 5.7E-14 1.2E-18 124.8 10.3 76 247-326 4-80 (260)
64 KOG0113 U1 small nuclear ribon 99.5 7.2E-14 1.6E-18 123.2 10.7 84 244-327 98-182 (335)
65 KOG0125 Ataxin 2-binding prote 99.5 2.4E-14 5.2E-19 127.7 7.7 85 242-328 91-176 (376)
66 TIGR01648 hnRNP-R-Q heterogene 99.5 6.2E-14 1.3E-18 140.7 11.4 134 129-274 232-368 (578)
67 KOG0126 Predicted RNA-binding 99.5 3.7E-15 8E-20 121.7 1.8 86 127-212 32-118 (219)
68 KOG0126 Predicted RNA-binding 99.5 2E-15 4.4E-20 123.2 0.2 82 248-329 36-118 (219)
69 PLN03120 nucleic acid binding 99.5 6.6E-14 1.4E-18 124.3 9.7 77 130-209 4-80 (260)
70 KOG1190 Polypyrimidine tract-b 99.5 1.4E-13 2.9E-18 126.4 11.7 186 129-325 27-227 (492)
71 KOG0130 RNA-binding protein RB 99.5 6.6E-14 1.4E-18 108.6 7.6 92 242-333 67-159 (170)
72 KOG0113 U1 small nuclear ribon 99.5 7.1E-14 1.5E-18 123.3 8.4 82 128-209 99-181 (335)
73 KOG0114 Predicted RNA-binding 99.5 1.4E-13 3E-18 101.7 8.3 77 246-325 17-94 (124)
74 KOG0107 Alternative splicing f 99.5 1.5E-13 3.3E-18 111.9 8.5 79 246-329 9-88 (195)
75 KOG0111 Cyclophilin-type pepti 99.5 6.4E-14 1.4E-18 117.9 5.7 82 246-327 9-91 (298)
76 KOG0107 Alternative splicing f 99.5 1.6E-13 3.5E-18 111.8 7.6 78 129-211 9-87 (195)
77 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 3.9E-18 122.2 8.4 81 127-209 93-174 (376)
78 KOG0105 Alternative splicing f 99.4 6.8E-13 1.5E-17 108.8 9.9 78 246-326 5-83 (241)
79 KOG4207 Predicted splicing fac 99.4 1.2E-13 2.6E-18 115.3 5.5 82 130-211 13-95 (256)
80 KOG0114 Predicted RNA-binding 99.4 6.3E-13 1.4E-17 98.3 8.3 77 128-207 16-93 (124)
81 KOG4210 Nuclear localization s 99.4 2.3E-13 5.1E-18 125.5 7.5 179 129-329 87-267 (285)
82 PLN03213 repressor of silencin 99.4 3.7E-13 8.1E-18 126.2 8.8 77 245-325 8-87 (759)
83 PLN03121 nucleic acid binding 99.4 8.6E-13 1.9E-17 115.2 9.9 77 129-208 4-80 (243)
84 KOG1456 Heterogeneous nuclear 99.4 1.2E-11 2.6E-16 112.3 16.9 163 128-326 29-199 (494)
85 smart00362 RRM_2 RNA recogniti 99.4 1.3E-12 2.9E-17 95.5 8.5 71 249-321 1-72 (72)
86 KOG0108 mRNA cleavage and poly 99.4 3E-13 6.4E-18 130.5 5.9 81 131-211 19-100 (435)
87 PLN03121 nucleic acid binding 99.4 1.8E-12 3.8E-17 113.3 10.0 77 246-325 4-80 (243)
88 KOG0131 Splicing factor 3b, su 99.4 4.3E-13 9.3E-18 110.0 5.8 79 246-324 8-87 (203)
89 PLN03213 repressor of silencin 99.4 1.1E-12 2.3E-17 123.2 9.1 74 130-207 10-86 (759)
90 KOG0111 Cyclophilin-type pepti 99.4 4.3E-13 9.4E-18 112.9 5.7 84 129-212 9-93 (298)
91 smart00360 RRM RNA recognition 99.4 2.2E-12 4.7E-17 94.0 8.5 70 252-321 1-71 (71)
92 KOG0129 Predicted RNA-binding 99.4 8.7E-12 1.9E-16 118.6 14.5 188 125-324 254-452 (520)
93 KOG0117 Heterogeneous nuclear 99.4 2.7E-12 5.9E-17 119.4 10.0 81 245-325 81-163 (506)
94 KOG0130 RNA-binding protein RB 99.4 1.3E-12 2.9E-17 101.4 6.5 82 130-211 72-154 (170)
95 KOG0132 RNA polymerase II C-te 99.3 9.6E-11 2.1E-15 116.2 20.2 77 128-210 419-496 (894)
96 smart00362 RRM_2 RNA recogniti 99.3 4E-12 8.7E-17 92.9 8.2 70 132-203 1-71 (72)
97 KOG0108 mRNA cleavage and poly 99.3 2.3E-12 5E-17 124.4 8.2 81 248-328 19-100 (435)
98 cd00590 RRM RRM (RNA recogniti 99.3 1E-11 2.3E-16 91.2 9.1 73 249-322 1-74 (74)
99 KOG0128 RNA-binding protein SA 99.3 1.7E-13 3.6E-18 137.1 -1.0 149 128-325 665-814 (881)
100 KOG0120 Splicing factor U2AF, 99.3 6.5E-12 1.4E-16 121.9 9.5 186 127-327 172-370 (500)
101 smart00360 RRM RNA recognition 99.3 7.9E-12 1.7E-16 91.0 7.6 69 135-203 1-70 (71)
102 KOG4454 RNA binding protein (R 99.3 1.1E-12 2.4E-17 110.6 2.1 134 129-310 8-146 (267)
103 COG0724 RNA-binding proteins ( 99.3 1.5E-11 3.3E-16 116.3 9.4 79 247-325 115-194 (306)
104 smart00361 RRM_1 RNA recogniti 99.3 1.6E-11 3.6E-16 89.0 7.3 60 261-320 2-69 (70)
105 cd00590 RRM RRM (RNA recogniti 99.3 3.6E-11 7.7E-16 88.3 9.0 73 132-205 1-74 (74)
106 PF13893 RRM_5: RNA recognitio 99.2 2.6E-11 5.7E-16 83.8 7.2 55 264-323 1-56 (56)
107 KOG1365 RNA-binding protein Fu 99.2 1.4E-11 3E-16 112.3 6.8 181 125-322 55-239 (508)
108 KOG0132 RNA polymerase II C-te 99.2 1.5E-09 3.3E-14 107.9 21.3 78 243-326 417-495 (894)
109 KOG0116 RasGAP SH3 binding pro 99.2 1.9E-10 4E-15 110.6 14.1 84 247-330 288-371 (419)
110 KOG0109 RNA-binding protein LA 99.2 2.2E-11 4.8E-16 107.3 6.1 71 249-327 4-75 (346)
111 KOG0415 Predicted peptidyl pro 99.2 2.7E-11 5.9E-16 109.3 5.8 87 242-328 234-321 (479)
112 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.5E-15 84.6 7.4 60 144-203 2-69 (70)
113 KOG4205 RNA-binding protein mu 99.1 1.8E-10 3.8E-15 106.7 9.7 85 129-213 96-180 (311)
114 KOG0226 RNA-binding proteins [ 99.1 7.8E-11 1.7E-15 102.0 5.7 173 127-326 93-270 (290)
115 KOG1456 Heterogeneous nuclear 99.1 3.6E-09 7.9E-14 96.5 16.5 194 127-327 284-490 (494)
116 KOG0146 RNA-binding protein ET 99.1 8.4E-11 1.8E-15 102.2 5.5 87 124-210 279-366 (371)
117 KOG4208 Nucleolar RNA-binding 99.1 4.4E-10 9.5E-15 94.7 7.6 81 246-326 48-130 (214)
118 PF13893 RRM_5: RNA recognitio 99.1 5.3E-10 1.2E-14 77.2 6.7 55 147-206 1-56 (56)
119 KOG0415 Predicted peptidyl pro 99.0 6.7E-10 1.5E-14 100.5 8.8 84 125-208 234-318 (479)
120 KOG4206 Spliceosomal protein s 99.0 5.4E-10 1.2E-14 95.9 7.6 78 248-328 10-92 (221)
121 KOG4208 Nucleolar RNA-binding 99.0 4.4E-10 9.5E-15 94.7 6.9 81 129-209 48-130 (214)
122 KOG0153 Predicted RNA-binding 99.0 6.7E-10 1.5E-14 100.5 7.6 79 241-325 222-302 (377)
123 KOG4849 mRNA cleavage factor I 99.0 1.6E-08 3.4E-13 91.5 16.0 77 248-324 81-160 (498)
124 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.6E-09 3.5E-14 103.8 7.8 83 128-210 403-486 (940)
125 KOG4307 RNA binding protein RB 98.9 2.7E-09 5.9E-14 104.6 8.6 196 128-325 309-513 (944)
126 KOG0112 Large RNA-binding prot 98.9 6.2E-10 1.3E-14 112.4 4.0 164 124-328 366-533 (975)
127 KOG0153 Predicted RNA-binding 98.9 4.1E-09 9E-14 95.5 7.6 77 126-208 224-302 (377)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 5E-09 1.1E-13 100.5 7.9 84 243-326 401-485 (940)
129 KOG0226 RNA-binding proteins [ 98.7 5E-09 1.1E-13 91.0 2.1 86 123-208 183-269 (290)
130 KOG0533 RRM motif-containing p 98.7 5.5E-08 1.2E-12 86.6 8.2 81 246-327 82-163 (243)
131 KOG4307 RNA binding protein RB 98.7 2.8E-07 6E-12 90.9 12.6 174 129-307 433-612 (944)
132 KOG0533 RRM motif-containing p 98.7 9E-08 1.9E-12 85.3 8.5 84 127-211 80-164 (243)
133 KOG0116 RasGAP SH3 binding pro 98.7 4.8E-08 1E-12 94.2 7.2 78 130-207 288-365 (419)
134 KOG4676 Splicing factor, argin 98.7 2E-08 4.4E-13 92.3 4.3 180 131-314 8-214 (479)
135 KOG1457 RNA binding protein (c 98.6 1.9E-07 4.1E-12 79.6 9.0 89 246-334 33-126 (284)
136 KOG2193 IGF-II mRNA-binding pr 98.6 9.9E-09 2.2E-13 95.1 1.1 152 131-326 2-157 (584)
137 KOG4660 Protein Mei2, essentia 98.6 5.1E-08 1.1E-12 94.2 5.7 163 123-307 68-231 (549)
138 KOG4209 Splicing factor RNPS1, 98.6 1.6E-07 3.5E-12 84.0 7.9 81 245-326 99-180 (231)
139 KOG1548 Transcription elongati 98.6 1.7E-07 3.7E-12 85.2 7.8 80 246-326 133-221 (382)
140 KOG4209 Splicing factor RNPS1, 98.5 1.4E-07 3.1E-12 84.4 6.3 86 124-209 95-180 (231)
141 PF04059 RRM_2: RNA recognitio 98.5 5.8E-07 1.2E-11 68.3 8.6 77 131-207 2-85 (97)
142 KOG4660 Protein Mei2, essentia 98.5 9.7E-08 2.1E-12 92.3 3.9 72 243-319 71-143 (549)
143 KOG4849 mRNA cleavage factor I 98.5 1.6E-06 3.5E-11 78.7 11.2 76 128-203 78-156 (498)
144 PF04059 RRM_2: RNA recognitio 98.4 1.2E-06 2.7E-11 66.5 8.3 78 248-325 2-86 (97)
145 KOG0151 Predicted splicing reg 98.4 3.7E-07 8E-12 90.3 6.6 84 127-210 171-258 (877)
146 KOG4454 RNA binding protein (R 98.4 1.2E-07 2.6E-12 80.6 2.4 76 247-324 9-85 (267)
147 KOG1995 Conserved Zn-finger pr 98.4 7.5E-07 1.6E-11 81.9 7.4 90 244-333 63-161 (351)
148 KOG0128 RNA-binding protein SA 98.3 5.2E-08 1.1E-12 98.4 -3.1 164 130-315 571-735 (881)
149 KOG0151 Predicted splicing reg 98.3 1.1E-06 2.5E-11 87.0 5.8 84 244-327 171-258 (877)
150 KOG0106 Alternative splicing f 98.3 7.4E-07 1.6E-11 77.6 3.7 70 248-325 2-72 (216)
151 PF11608 Limkain-b1: Limkain b 98.2 5.5E-06 1.2E-10 59.7 6.3 67 248-324 3-75 (90)
152 PF08777 RRM_3: RNA binding mo 98.1 5.5E-06 1.2E-10 64.7 5.2 69 248-322 2-76 (105)
153 KOG1995 Conserved Zn-finger pr 98.0 4.5E-06 9.8E-11 76.9 4.0 83 128-210 64-155 (351)
154 KOG3152 TBP-binding protein, a 98.0 6.6E-06 1.4E-10 72.0 4.4 71 130-200 74-157 (278)
155 PF11608 Limkain-b1: Limkain b 97.9 2.6E-05 5.6E-10 56.3 5.8 68 131-208 3-76 (90)
156 KOG1855 Predicted RNA-binding 97.8 0.00036 7.9E-09 65.8 12.5 65 246-310 230-307 (484)
157 KOG4210 Nuclear localization s 97.8 1.6E-05 3.4E-10 73.9 3.4 81 131-211 185-266 (285)
158 PF08777 RRM_3: RNA binding mo 97.7 6.4E-05 1.4E-09 58.7 5.1 57 131-193 2-58 (105)
159 KOG0115 RNA-binding protein p5 97.5 0.00018 3.9E-09 63.3 5.9 87 184-310 6-93 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.9E-09 47.5 4.9 52 248-306 2-53 (53)
161 COG5175 MOT2 Transcriptional r 97.4 0.0003 6.5E-09 64.1 6.4 81 245-325 112-202 (480)
162 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00041 8.9E-09 46.6 4.8 52 131-189 2-53 (53)
163 KOG2314 Translation initiation 97.3 0.00046 1E-08 67.3 6.2 77 247-324 58-142 (698)
164 KOG2416 Acinus (induces apopto 97.3 0.00041 8.8E-09 68.1 5.5 76 126-207 440-520 (718)
165 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0014 3.1E-08 50.3 7.3 77 248-325 7-91 (100)
166 KOG1855 Predicted RNA-binding 97.2 0.00043 9.3E-09 65.3 4.2 69 126-194 227-308 (484)
167 KOG2314 Translation initiation 97.1 0.0021 4.6E-08 62.9 8.8 74 131-205 59-140 (698)
168 KOG4676 Splicing factor, argin 97.1 0.00078 1.7E-08 62.8 5.0 80 249-328 9-91 (479)
169 KOG1996 mRNA splicing factor [ 97.0 0.0016 3.5E-08 58.3 6.5 79 246-324 280-365 (378)
170 KOG0129 Predicted RNA-binding 97.0 0.0018 3.9E-08 62.9 7.2 64 128-191 368-432 (520)
171 KOG3152 TBP-binding protein, a 97.0 0.00039 8.5E-09 61.2 2.4 69 249-317 76-157 (278)
172 COG5175 MOT2 Transcriptional r 97.0 0.002 4.3E-08 58.9 6.9 76 132-207 116-201 (480)
173 KOG1999 RNA polymerase II tran 96.9 0.0052 1.1E-07 64.3 9.6 32 170-201 208-239 (1024)
174 PF15023 DUF4523: Protein of u 96.8 0.0065 1.4E-07 48.7 7.3 75 243-324 82-160 (166)
175 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0073 1.6E-07 46.4 7.4 76 130-206 6-89 (100)
176 PF08675 RNA_bind: RNA binding 96.7 0.0065 1.4E-07 44.1 5.8 55 132-194 10-64 (87)
177 PF08952 DUF1866: Domain of un 96.7 0.0095 2.1E-07 48.6 7.6 78 243-328 23-109 (146)
178 KOG2416 Acinus (induces apopto 96.6 0.0022 4.7E-08 63.2 4.3 79 241-325 438-521 (718)
179 KOG2202 U2 snRNP splicing fact 96.5 0.0011 2.5E-08 58.6 1.7 63 262-325 83-147 (260)
180 PF08675 RNA_bind: RNA binding 96.3 0.013 2.7E-07 42.7 5.7 55 247-310 9-63 (87)
181 KOG0115 RNA-binding protein p5 96.3 0.0035 7.5E-08 55.4 3.3 75 131-206 32-111 (275)
182 PF10309 DUF2414: Protein of u 96.3 0.026 5.6E-07 38.9 6.8 54 248-309 6-62 (62)
183 PF10309 DUF2414: Protein of u 96.3 0.022 4.8E-07 39.2 6.4 53 131-192 6-62 (62)
184 PF08952 DUF1866: Domain of un 96.2 0.017 3.7E-07 47.2 6.7 73 128-208 25-106 (146)
185 PF15023 DUF4523: Protein of u 96.2 0.025 5.4E-07 45.5 7.2 77 124-207 80-160 (166)
186 KOG2202 U2 snRNP splicing fact 96.0 0.0028 6E-08 56.1 1.2 62 145-207 83-146 (260)
187 KOG2193 IGF-II mRNA-binding pr 95.8 0.0094 2E-07 56.4 3.7 74 248-327 2-77 (584)
188 KOG1996 mRNA splicing factor [ 95.4 0.037 7.9E-07 50.0 6.0 65 144-208 300-366 (378)
189 PF10446 DUF2457: Protein of u 95.4 0.003 6.5E-08 60.5 -1.1 7 248-254 192-198 (458)
190 KOG2591 c-Mpl binding protein, 95.3 0.045 9.7E-07 53.8 6.7 99 100-205 144-248 (684)
191 KOG2135 Proteins containing th 95.3 0.024 5.3E-07 54.6 4.8 74 248-327 373-447 (526)
192 KOG0112 Large RNA-binding prot 95.2 0.0064 1.4E-07 63.0 0.7 81 242-323 367-448 (975)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.026 5.6E-07 48.7 4.2 79 247-325 7-97 (176)
194 KOG4483 Uncharacterized conser 95.1 0.069 1.5E-06 50.3 6.8 64 129-199 390-454 (528)
195 KOG2135 Proteins containing th 94.5 0.027 5.8E-07 54.3 2.8 81 127-213 369-450 (526)
196 KOG2591 c-Mpl binding protein, 94.1 0.063 1.4E-06 52.8 4.4 70 247-323 175-249 (684)
197 KOG1999 RNA polymerase II tran 94.0 0.19 4E-06 53.2 7.8 22 289-310 210-231 (1024)
198 KOG2236 Uncharacterized conser 93.8 0.72 1.6E-05 44.8 10.8 13 174-186 261-273 (483)
199 KOG2253 U1 snRNP complex, subu 93.8 0.039 8.4E-07 55.6 2.4 71 244-323 37-108 (668)
200 PF07576 BRAP2: BRCA1-associat 93.7 0.53 1.2E-05 37.0 8.2 66 247-314 13-80 (110)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.09 1.9E-06 45.4 4.2 66 130-195 7-78 (176)
202 KOG2068 MOT2 transcription fac 93.6 0.026 5.6E-07 52.3 0.7 78 248-325 78-162 (327)
203 KOG1924 RhoA GTPase effector D 93.4 0.27 5.9E-06 50.7 7.5 7 184-190 211-217 (1102)
204 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 2.3 5E-05 39.0 12.2 178 126-310 11-212 (309)
205 PF07292 NID: Nmi/IFP 35 domai 92.8 0.17 3.7E-06 37.7 3.9 71 175-268 1-73 (88)
206 KOG4285 Mitotic phosphoprotein 92.7 0.26 5.6E-06 45.0 5.6 74 247-327 197-271 (350)
207 PF04147 Nop14: Nop14-like fam 92.6 0.059 1.3E-06 58.5 1.8 13 143-155 427-439 (840)
208 KOG2253 U1 snRNP complex, subu 92.6 0.016 3.5E-07 58.2 -2.2 158 125-306 35-193 (668)
209 PF04847 Calcipressin: Calcipr 92.6 0.36 7.7E-06 41.9 6.2 60 260-325 8-70 (184)
210 PF07576 BRAP2: BRCA1-associat 91.5 1.6 3.4E-05 34.3 8.1 62 132-195 15-77 (110)
211 KOG2318 Uncharacterized conser 91.3 0.57 1.2E-05 46.7 6.7 79 128-206 172-305 (650)
212 KOG4285 Mitotic phosphoprotein 89.8 0.63 1.4E-05 42.6 5.0 70 130-206 197-267 (350)
213 KOG0804 Cytoplasmic Zn-finger 89.5 1.1 2.3E-05 43.5 6.7 65 129-195 73-138 (493)
214 KOG4574 RNA-binding protein (c 89.3 0.29 6.3E-06 50.9 2.9 75 248-328 299-376 (1007)
215 KOG2068 MOT2 transcription fac 89.2 0.36 7.8E-06 45.0 3.2 77 131-207 78-161 (327)
216 COG5180 PBP1 Protein interacti 89.2 0.74 1.6E-05 44.6 5.3 14 178-191 329-342 (654)
217 KOG0804 Cytoplasmic Zn-finger 88.6 1.1 2.4E-05 43.4 6.1 65 247-314 74-141 (493)
218 KOG4574 RNA-binding protein (c 88.2 0.44 9.6E-06 49.6 3.4 82 128-215 296-380 (1007)
219 PF11767 SET_assoc: Histone ly 87.4 2.3 5.1E-05 29.9 5.6 54 258-320 11-65 (66)
220 PF04847 Calcipressin: Calcipr 84.3 3.1 6.8E-05 36.1 6.2 59 143-207 8-69 (184)
221 KOG0299 U3 snoRNP-associated p 84.1 2.3 4.9E-05 41.4 5.6 13 264-276 279-291 (479)
222 KOG2141 Protein involved in hi 83.9 0.51 1.1E-05 48.4 1.3 18 292-309 624-641 (822)
223 PF03880 DbpA: DbpA RNA bindin 82.5 5 0.00011 29.0 5.8 58 257-323 11-74 (74)
224 KOG4019 Calcineurin-mediated s 82.4 1.5 3.2E-05 37.2 3.2 73 248-326 11-90 (193)
225 PF02724 CDC45: CDC45-like pro 81.9 0.93 2E-05 47.6 2.4 7 147-153 339-345 (622)
226 PF11767 SET_assoc: Histone ly 81.7 5.5 0.00012 28.0 5.4 47 140-195 10-56 (66)
227 KOG4410 5-formyltetrahydrofola 76.8 5.5 0.00012 36.2 5.2 48 130-182 330-377 (396)
228 PF14111 DUF4283: Domain of un 76.7 2.8 6E-05 35.1 3.3 109 141-280 28-138 (153)
229 PF05285 SDA1: SDA1; InterPro 74.4 1.8 3.8E-05 41.5 1.7 11 140-150 229-239 (324)
230 KOG0262 RNA polymerase I, larg 73.7 8.6 0.00019 42.5 6.5 23 299-321 1531-1554(1640)
231 KOG1980 Uncharacterized conser 73.3 1.9 4.1E-05 43.8 1.6 17 174-190 526-543 (754)
232 PF09073 BUD22: BUD22; InterP 72.1 2.7 5.9E-05 42.1 2.4 6 255-260 405-410 (432)
233 PF09073 BUD22: BUD22; InterP 71.8 2.3 5.1E-05 42.6 1.9 9 300-308 410-418 (432)
234 KOG4410 5-formyltetrahydrofola 70.4 10 0.00022 34.6 5.3 58 246-309 329-394 (396)
235 PF03468 XS: XS domain; Inter 69.8 5.9 0.00013 31.5 3.4 56 132-190 10-75 (116)
236 KOG2318 Uncharacterized conser 69.5 21 0.00045 36.2 7.7 80 245-324 172-306 (650)
237 PF07530 PRE_C2HC: Associated 69.1 14 0.00031 26.1 4.9 61 262-325 2-64 (68)
238 PF03880 DbpA: DbpA RNA bindin 68.6 17 0.00036 26.2 5.4 58 140-206 11-74 (74)
239 KOG4213 RNA-binding protein La 68.6 5.9 0.00013 33.5 3.2 61 130-195 111-173 (205)
240 PF07423 DUF1510: Protein of u 67.9 5.1 0.00011 35.6 3.0 12 141-152 149-160 (217)
241 TIGR02542 B_forsyth_147 Bacter 67.8 21 0.00046 27.8 5.8 46 255-300 82-130 (145)
242 PF11081 DUF2890: Protein of u 67.0 3.8 8.2E-05 35.2 1.9 9 263-271 175-183 (187)
243 PF10567 Nab6_mRNP_bdg: RNA-re 66.3 14 0.0003 34.1 5.4 81 244-324 12-106 (309)
244 PF03468 XS: XS domain; Inter 64.6 6.7 0.00015 31.2 2.8 50 248-300 9-67 (116)
245 TIGR00927 2A1904 K+-dependent 64.1 2.8 6E-05 45.2 0.7 8 132-139 906-913 (1096)
246 KOG4594 Sequence-specific sing 63.7 1.1E+02 0.0024 28.3 10.3 8 465-472 241-248 (354)
247 KOG4483 Uncharacterized conser 63.6 20 0.00042 34.5 6.0 65 246-317 390-455 (528)
248 smart00596 PRE_C2HC PRE_C2HC d 63.2 18 0.00039 25.6 4.3 60 262-324 2-63 (69)
249 KOG0262 RNA polymerase I, larg 62.0 9.3 0.0002 42.3 4.0 16 137-152 1448-1463(1640)
250 KOG4434 Molecular chaperone SE 59.7 5.4 0.00012 37.8 1.6 6 174-179 455-460 (520)
251 KOG2044 5'-3' exonuclease HKE1 59.4 72 0.0016 34.0 9.5 22 171-192 630-651 (931)
252 KOG4264 Nucleo-cytoplasmic pro 55.5 12 0.00027 37.2 3.3 12 289-300 441-452 (694)
253 KOG4365 Uncharacterized conser 52.8 2.6 5.6E-05 40.8 -1.6 77 248-325 4-81 (572)
254 PF07530 PRE_C2HC: Associated 52.8 40 0.00086 23.9 4.8 60 145-207 2-63 (68)
255 COG5193 LHP1 La protein, small 52.3 6.9 0.00015 37.6 1.1 65 128-192 172-246 (438)
256 PRK14548 50S ribosomal protein 52.1 43 0.00094 24.8 5.0 58 132-192 22-81 (84)
257 KOG2295 C2H2 Zn-finger protein 51.1 2 4.4E-05 42.7 -2.6 64 130-193 231-294 (648)
258 smart00596 PRE_C2HC PRE_C2HC d 51.1 37 0.00079 24.0 4.2 60 145-207 2-63 (69)
259 COG5193 LHP1 La protein, small 50.7 7.9 0.00017 37.2 1.2 63 247-309 174-246 (438)
260 KOG2891 Surface glycoprotein [ 50.1 11 0.00023 34.2 1.9 33 131-163 150-194 (445)
261 TIGR03636 L23_arch archaeal ri 50.1 48 0.001 24.2 4.9 58 132-192 15-74 (77)
262 COG5593 Nucleic-acid-binding p 49.7 8 0.00017 38.6 1.1 20 132-151 800-819 (821)
263 KOG3130 Uncharacterized conser 48.5 17 0.00037 34.9 3.0 20 134-153 354-373 (514)
264 KOG4365 Uncharacterized conser 46.9 3.8 8.2E-05 39.7 -1.5 76 131-207 4-80 (572)
265 KOG0772 Uncharacterized conser 46.3 16 0.00035 36.4 2.6 19 173-191 245-263 (641)
266 KOG2891 Surface glycoprotein [ 46.1 26 0.00056 31.9 3.6 36 245-280 147-194 (445)
267 KOG2295 C2H2 Zn-finger protein 45.4 3.4 7.5E-05 41.2 -2.1 63 246-308 230-295 (648)
268 PF15513 DUF4651: Domain of un 45.2 48 0.001 22.9 4.0 18 145-162 9-26 (62)
269 KOG4434 Molecular chaperone SE 44.5 9.4 0.0002 36.2 0.7 9 131-139 399-407 (520)
270 PRK14548 50S ribosomal protein 44.5 53 0.0012 24.4 4.5 57 250-309 23-81 (84)
271 COG4547 CobT Cobalamin biosynt 43.9 8.1 0.00018 37.9 0.2 19 131-149 317-335 (620)
272 TIGR03636 L23_arch archaeal ri 43.7 58 0.0013 23.7 4.5 58 249-309 15-74 (77)
273 KOG2375 Protein interacting wi 43.5 70 0.0015 34.0 6.7 6 177-182 297-302 (756)
274 KOG3130 Uncharacterized conser 42.3 23 0.00049 34.1 2.8 7 175-181 370-376 (514)
275 PF00403 HMA: Heavy-metal-asso 40.5 1.1E+02 0.0024 20.6 5.6 55 249-309 1-59 (62)
276 KOG2076 RNA polymerase III tra 40.5 20 0.00043 38.4 2.4 12 146-157 178-189 (895)
277 PF05764 YL1: YL1 nuclear prot 40.0 12 0.00025 34.3 0.5 11 256-266 182-192 (240)
278 KOG4008 rRNA processing protei 40.0 23 0.0005 31.6 2.3 36 125-160 35-70 (261)
279 PF02714 DUF221: Domain of unk 39.7 49 0.0011 31.6 4.9 57 175-270 1-57 (325)
280 PF03896 TRAP_alpha: Transloco 39.7 10 0.00022 35.4 0.2 6 132-137 86-91 (285)
281 KOG0650 WD40 repeat nucleolar 39.5 18 0.0004 36.8 1.8 14 131-144 119-132 (733)
282 KOG4008 rRNA processing protei 38.8 25 0.00055 31.3 2.4 33 246-278 39-71 (261)
283 PRK11634 ATP-dependent RNA hel 38.8 1.8E+02 0.0039 30.9 9.2 60 257-325 497-562 (629)
284 PF05793 TFIIF_alpha: Transcri 38.0 11 0.00023 38.9 0.0 23 257-280 462-484 (527)
285 KOG2147 Nucleolar protein invo 37.0 21 0.00046 37.3 1.9 18 138-155 388-409 (823)
286 KOG4274 Positive cofactor 2 (P 36.0 50 0.0011 33.5 4.2 21 290-310 39-59 (742)
287 PRK05901 RNA polymerase sigma 35.7 14 0.00031 37.6 0.5 10 289-298 320-329 (509)
288 cd00874 RNA_Cyclase_Class_II R 35.4 3.5E+02 0.0076 26.0 9.8 48 249-297 188-238 (326)
289 KOG1980 Uncharacterized conser 34.6 16 0.00035 37.5 0.6 8 132-139 528-535 (754)
290 TIGR01651 CobT cobaltochelatas 32.9 15 0.00032 37.8 0.1 17 130-146 295-311 (600)
291 COG4547 CobT Cobalamin biosynt 32.0 28 0.00061 34.3 1.7 11 194-204 424-434 (620)
292 PF07292 NID: Nmi/IFP 35 domai 31.5 73 0.0016 23.9 3.5 31 292-322 1-33 (88)
293 PF05470 eIF-3c_N: Eukaryotic 30.2 30 0.00066 36.1 1.8 15 179-193 276-290 (595)
294 PF05793 TFIIF_alpha: Transcri 28.2 19 0.00042 37.1 0.0 13 257-269 476-488 (527)
295 KOG4213 RNA-binding protein La 28.1 82 0.0018 27.0 3.6 58 248-310 112-171 (205)
296 KOG3871 Cell adhesion complex 27.7 29 0.00062 33.0 1.0 6 248-253 340-345 (449)
297 KOG3034 Isoamyl acetate-hydrol 27.7 2.1E+02 0.0045 26.7 6.4 23 174-196 124-148 (308)
298 KOG2256 Predicted protein invo 27.0 38 0.00082 35.1 1.8 6 140-145 187-192 (661)
299 PF05470 eIF-3c_N: Eukaryotic 27.0 64 0.0014 33.8 3.5 20 174-193 274-293 (595)
300 KOG1295 Nonsense-mediated deca 26.7 67 0.0014 31.0 3.2 66 130-195 7-75 (376)
301 PF08206 OB_RNB: Ribonuclease 26.5 16 0.00034 24.9 -0.7 37 288-324 7-44 (58)
302 KOG2266 Chromatin-associated p 26.3 52 0.0011 32.6 2.5 11 168-178 242-252 (594)
303 KOG4019 Calcineurin-mediated s 25.8 57 0.0012 28.0 2.3 72 131-208 11-89 (193)
304 CHL00100 ilvH acetohydroxyacid 25.1 1.2E+02 0.0025 26.2 4.2 61 144-205 57-117 (174)
305 KOG0772 Uncharacterized conser 24.6 53 0.0012 33.0 2.2 15 287-301 476-490 (641)
306 PF12782 Innate_immun: Inverte 24.6 2.8E+02 0.0061 24.2 6.2 9 301-309 12-20 (311)
307 PF11823 DUF3343: Protein of u 24.6 91 0.002 22.2 3.0 27 291-317 3-30 (73)
308 KOG1295 Nonsense-mediated deca 24.1 69 0.0015 30.9 2.8 63 248-310 8-73 (376)
309 PF03439 Spt5-NGN: Early trans 23.6 1.4E+02 0.003 22.0 3.9 33 273-310 33-65 (84)
310 COG0030 KsgA Dimethyladenosine 23.5 96 0.0021 28.6 3.5 33 249-281 97-129 (259)
311 PF06991 Prp19_bind: Splicing 22.9 34 0.00074 31.8 0.6 12 143-154 152-163 (276)
312 KOG2393 Transcription initiati 22.8 97 0.0021 31.4 3.6 20 250-269 476-495 (555)
313 COG2608 CopZ Copper chaperone 22.8 1.9E+02 0.0041 20.5 4.3 45 248-298 4-48 (71)
314 TIGR03399 RNA_3prim_cycl RNA 3 22.7 6.9E+02 0.015 24.0 10.7 48 249-297 190-240 (326)
315 KOG2044 5'-3' exonuclease HKE1 22.6 1E+03 0.022 25.9 10.9 23 247-271 667-689 (931)
316 PF08156 NOP5NT: NOP5NT (NUC12 22.3 28 0.00061 24.5 -0.1 38 262-309 27-64 (67)
317 PRK11901 hypothetical protein; 22.0 1.6E+02 0.0035 28.0 4.7 57 134-192 246-304 (327)
318 COG0150 PurM Phosphoribosylami 21.9 24 0.00051 33.6 -0.7 47 144-194 275-321 (345)
319 PRK01178 rps24e 30S ribosomal 21.9 2.2E+02 0.0048 21.9 4.7 48 140-188 29-81 (99)
320 KOG4156 Claspin, protein media 21.8 45 0.00097 34.3 1.1 15 139-153 754-768 (1329)
321 PF14893 PNMA: PNMA 21.1 78 0.0017 30.4 2.6 24 129-152 17-40 (331)
322 TIGR01651 CobT cobaltochelatas 20.9 61 0.0013 33.5 1.9 7 160-166 395-401 (600)
323 KOG1144 Translation initiation 20.8 1.5E+02 0.0033 31.7 4.7 9 132-140 478-486 (1064)
324 COG4907 Predicted membrane pro 20.7 87 0.0019 31.1 2.8 27 433-459 568-594 (595)
325 TIGR00119 acolac_sm acetolacta 20.5 3.8E+02 0.0082 22.6 6.3 61 143-204 55-115 (157)
326 PTZ00191 60S ribosomal protein 20.3 2.5E+02 0.0054 23.3 4.9 55 132-189 83-139 (145)
327 PF11411 DNA_ligase_IV: DNA li 20.2 80 0.0017 19.1 1.5 16 257-272 19-34 (36)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.9e-37 Score=289.22 Aligned_cols=173 Identities=24% Similarity=0.403 Sum_probs=154.4
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++||+.|+ ..|.++.|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999999999999999999999999999999999888 5689999999
Q ss_pred EEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecC
Q 011975 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~ 283 (474)
.++..... ....++|||+|||+.+|+++|+++|++||.|+.|+|++|+
T Consensus 182 ~~a~p~~~--------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred eccccccc--------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 98743211 0123589999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEecccCCCC
Q 011975 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPKP 329 (474)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a~~~~~~ 329 (474)
.+++++|||||+|.+.++|.+||+.|| ..|.+ ++|+|.++....+.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999999999999999999999999 76765 78999999876543
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-35 Score=254.92 Aligned_cols=182 Identities=26% Similarity=0.452 Sum_probs=159.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
.....|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|-+.++|+.||..|+ .+|..|.|+..|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 335579999999999999999999999999999999999999999999999999999999999999 5589999999999
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
.+++...... ...-+..........++|||+|++..+|+++||+.|++||.|.+|||+++
T Consensus 140 TRKp~e~n~~----------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---- 199 (321)
T KOG0148|consen 140 TRKPSEMNGK----------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---- 199 (321)
T ss_pred ccCccccCCC----------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----
Confidence 8877322111 11122333556667899999999999999999999999999999999988
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCCCC
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPGK 331 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~~~ 331 (474)
+||+||+|.++|+|.+||..+| ..|.|+.++|.|.+.......
T Consensus 200 --qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 200 --QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred --cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 8999999999999999999999 999999999999987665443
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=260.92 Aligned_cols=198 Identities=19% Similarity=0.334 Sum_probs=153.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-cc-CCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI-GNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~-~gr~~~v~~ 205 (474)
+..+.|||+.||.++.|++|..||++.|.|-++|||+|+.+|.+||||||.|.+.+.|+.||+.||. .| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999994 34 889998888
Q ss_pred cccCCCCCCCcCcccc--------------------------ccc------------------ccccccccc--------
Q 011975 206 ASIGPATTPAVASTAT--------------------------HQH------------------QHQHQHQHQ-------- 233 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------------------------~~~------------------~~~~~~~~~-------- 233 (474)
+..+...-.-...... ... .+++.....
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 7543322000000000 000 000000000
Q ss_pred -----ccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHc
Q 011975 234 -----HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308 (474)
Q Consensus 234 -----~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~ 308 (474)
..............+.|||+||+.++|++.|+++|+.||.|.+|+.++| ||||+|.+.++|.+||+.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 0000001123344689999999999999999999999999999998865 999999999999999999
Q ss_pred CC-CccCCeEEEEEecccCCCCCCCC
Q 011975 309 PH-KNFEGHILNCQRAIDGPKPGKSR 333 (474)
Q Consensus 309 ~~-~~~~g~~l~v~~a~~~~~~~~~~ 333 (474)
+| +.|+|..|.|.+|++..+....+
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred hcCceecCceEEEEecCChhhhccch
Confidence 99 99999999999999877766554
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4e-33 Score=277.50 Aligned_cols=179 Identities=21% Similarity=0.426 Sum_probs=154.0
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~ 206 (474)
...++|||+|||+++++++|+++|.+||.|.+|+|++|+.+++++|||||+|.+.++|++||+.+++ .|.||.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999884 589999999864
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
...+...... ..........++|||+||++.+++++|+++|+.||.|.+|+|++|+.++
T Consensus 185 ~~~p~a~~~~---------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 185 SNMPQAQPII---------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred cccccccccc---------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Confidence 3221110000 0000111234689999999999999999999999999999999999999
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
++||||||+|.+.++|.+||..|| ..|.|+.|+|.++...+
T Consensus 244 ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 244 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999 99999999999998544
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.8e-31 Score=243.69 Aligned_cols=170 Identities=23% Similarity=0.360 Sum_probs=147.8
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC--ccCC--eee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGN--RMT 201 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~--~~~g--r~~ 201 (474)
.+.+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|+. .|.| ..|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 344556899999999999999999999999999999999999999999999999999999999999983 4655 455
Q ss_pred EEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
.|+++...... ....++|||+-|+..+||.+|+++|++||.|++|.|++
T Consensus 110 qvk~Ad~E~er-------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 110 QVKYADGERER-------------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred eecccchhhhc-------------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 55555432221 12235899999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCC--eEEEEEecccCC
Q 011975 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG--HILNCQRAIDGP 327 (474)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g--~~l~v~~a~~~~ 327 (474)
|. .+.+||||||+|.+.+.|..||+.|| .++.| .+|.|+||....
T Consensus 159 d~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 159 DP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred cc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 95 79999999999999999999999999 77877 679999997643
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.3e-30 Score=251.69 Aligned_cols=201 Identities=20% Similarity=0.278 Sum_probs=153.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCC--eeeEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN--RMTACQ 204 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~g--r~~~v~ 204 (474)
...++|||+|||..+++++|+.+|++||.|..++|+.+..++.++|||||+|.+.++|+.||+.|++. +.+ +.|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 34678999999999999999999999999999999999888999999999999999999999999955 444 677888
Q ss_pred EcccCCCCCCCcCcc----------cc--------------cccccccc-------------------ccc----cccc-
Q 011975 205 LASIGPATTPAVAST----------AT--------------HQHQHQHQ-------------------HQH----QHQH- 236 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~----------~~--------------~~~~~~~~-------------------~~~----~~~~- 236 (474)
++............. .. ........ ... ....
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 875332110000000 00 00000000 000 0000
Q ss_pred ------------cccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHH
Q 011975 237 ------------QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKK 304 (474)
Q Consensus 237 ------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~ 304 (474)
..........+.+|||+|||+.+++++|+++|++||.|.+|+|++|+.++.+||||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00000112234579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-CccCCeEEEEEecccCCC
Q 011975 305 ALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 305 Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
||..|| ..|.||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999 999999999999987654
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.8e-30 Score=266.62 Aligned_cols=185 Identities=23% Similarity=0.400 Sum_probs=153.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccC----Ceee
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG----NRMT 201 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~----gr~~ 201 (474)
....++|||+|||+++|+++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.+++ .|. ++.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3455789999999999999999999999999999999986 799999999999999999999999885 466 8888
Q ss_pred EEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
.|.++..+......... ...............++|||+||++.+|+++|+++|++||.|.+|+|++
T Consensus 254 ~v~~a~~k~er~~~~~~--------------~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 254 YVGRAQKRAEREAELRR--------------KFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred EeecccChhhhHHHHHh--------------hHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 88887543322100000 0000001112233456899999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
| .+++++|||||+|.+.++|.+||..|| ..|.|++|.|.++..+.
T Consensus 320 d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 320 D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 9 689999999999999999999999999 99999999999998654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.2e-29 Score=245.86 Aligned_cols=166 Identities=25% Similarity=0.406 Sum_probs=149.1
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.++..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4699999999999999999999999999999999999999999999999999999999999988 458999999998743
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
... ....++|||+|||..+++++|+.+|++||.|..++|+.+..++.+
T Consensus 83 ~~~--------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 83 SSD--------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred ccc--------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 211 112358999999999999999999999999999999999888999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEecccCC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGP 327 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a~~~~ 327 (474)
+|||||+|.+.++|..||..|| ..+.| ++|.|.|+....
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999999999999999 77766 678888886543
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=5.4e-30 Score=258.69 Aligned_cols=182 Identities=25% Similarity=0.380 Sum_probs=156.0
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
..+...++|||+|||+.+|+++|+++|++||.|..|+|+.|+.+++++|||||+|.+.++|.+||...+..|.|+.|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999876688999999998
Q ss_pred EcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC
Q 011975 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
++............ .........++|||+|||+.+|+++|+++|++||.|..|.|+++..
T Consensus 164 ~~~~~~~~~~~~~~--------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 164 SSQAEKNRAAKAAT--------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred ecchhhhhhhhccc--------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 76432211100000 0001112267999999999999999999999999999999999998
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.|+...
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999999999 9999999999998743
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=3.8e-29 Score=249.03 Aligned_cols=193 Identities=19% Similarity=0.302 Sum_probs=142.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-cc-CCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI-GNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~-~gr~~~v~~ 205 (474)
...++|||+|||+++++++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.|+. .| .++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999999999999999999999999999999999 5999999999999999999999999984 34 467666655
Q ss_pred cccCCCC---------C---------CC---cC--c---ccccccccc------------------ccc-------cccc
Q 011975 206 ASIGPAT---------T---------PA---VA--S---TATHQHQHQ------------------HQH-------QHQH 234 (474)
Q Consensus 206 ~~~~~~~---------~---------~~---~~--~---~~~~~~~~~------------------~~~-------~~~~ 234 (474)
+...... . .. .. . ......... ... ....
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 4311100 0 00 00 0 000000000 000 0000
Q ss_pred ------cccccccccccccceEEccCCCCCCCHHHHHHHHhcc--CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHH
Q 011975 235 ------QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (474)
Q Consensus 235 ------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (474)
.............++|||+||++.+|+++|+++|+.| |.|++|.++ ++||||+|.+.++|.+||
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 0000001122335789999999999999999999999 999999875 569999999999999999
Q ss_pred HcCC-CccCCeEEEEEecccCCCC
Q 011975 307 EEPH-KNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 307 ~~~~-~~~~g~~l~v~~a~~~~~~ 329 (474)
..|| ..|.|+.|+|.|+.+....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 9999 9999999999999876544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1e-28 Score=255.08 Aligned_cols=164 Identities=24% Similarity=0.437 Sum_probs=148.0
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEcccCC
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~~~~ 210 (474)
+|||+|||+++|+++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++||+.++.. |.|+.|+|.|+...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999955 999999999976433
Q ss_pred CCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCccc
Q 011975 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg 290 (474)
.... ....+|||+|||.++++++|+++|+.||.|.+|+|+++. +++++|
T Consensus 82 ~~~~------------------------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg 130 (562)
T TIGR01628 82 SLRR------------------------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRG 130 (562)
T ss_pred cccc------------------------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCccc
Confidence 2211 123479999999999999999999999999999999884 788999
Q ss_pred EEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
||||+|.+.++|.+||..+| ..+.++.|.|.+...+
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 99999999999999999999 8899999999776543
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=227.88 Aligned_cols=196 Identities=22% Similarity=0.367 Sum_probs=153.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.-+|.|+|||+.|...+|+.+|+.||.|.+|.|.+.+ .|+-.|||||+|....+|..||+.+| ..|.||.|.|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4589999999999999999999999999999999777 45555999999999999999999999 679999999999986
Q ss_pred CCCCCCCcCcccc----------ccc-----cc------------ccc---------------ccc-----cc-------
Q 011975 209 GPATTPAVASTAT----------HQH-----QH------------QHQ---------------HQH-----QH------- 234 (474)
Q Consensus 209 ~~~~~~~~~~~~~----------~~~-----~~------------~~~---------------~~~-----~~------- 234 (474)
+............ ... .. ... ... ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 6554332200000 000 00 000 000 00
Q ss_pred ccccc----ccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 235 QHQQH----HQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 235 ~~~~~----~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
..... .........+|||+||||.+|+++|.+.|++||.|.++.|+.++.|++++|+|||.|.+..+|..||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 00000 01223345899999999999999999999999999999999999999999999999999999999999872
Q ss_pred -------CccCCeEEEEEecccC
Q 011975 311 -------KNFEGHILNCQRAIDG 326 (474)
Q Consensus 311 -------~~~~g~~l~v~~a~~~ 326 (474)
..|+||.|.|.+|..+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 3678999999999875
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.7e-28 Score=207.16 Aligned_cols=202 Identities=20% Similarity=0.257 Sum_probs=158.5
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCcc---CCeee
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI---GNRMT 201 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~---~gr~~ 201 (474)
.+.....+|||.+||..+|..+|..+|++||.|..-||+.|..+|.+||.+||.|....+|+.||+.|++.. +-..|
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 334445689999999999999999999999999999999999999999999999999999999999999664 55688
Q ss_pred EEEEcccCCCCCCCcCccccccccccccccc-c-------------------c-----------cccccccccccccceE
Q 011975 202 ACQLASIGPATTPAVASTATHQHQHQHQHQH-Q-------------------H-----------QHQQHHQQSEYTQRKI 250 (474)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~-----------~~~~~~~~~~~~~~~l 250 (474)
.|+++.....................+.... + + ......+.......||
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 8988864422211111000000000000000 0 0 0000113334457899
Q ss_pred EccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 251 FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 251 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
||.||..++++.-|+++|.+||.|..|+|++|..+.++|||+||.+.+.++|..||..|| ..|.+|.|.|+|...+
T Consensus 282 FvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999998654
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=198.14 Aligned_cols=170 Identities=25% Similarity=0.363 Sum_probs=153.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
..||||+||+..++++-|.++|-+.|+|.+++|.+|+.+...+|||||+|.+.++|+-||+.++ -+|.||.|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 3589999999999999999999999999999999999999999999999999999999999999 458999999999872
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEe-EeeecCCCCC
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGK 287 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~d~~~g~ 287 (474)
.... ...+.+|||+||.+.+++..|..+|+.||.|... .|+++..|+.
T Consensus 89 ~~~n-------------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 89 HQKN-------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred cccc-------------------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC
Confidence 2221 1123589999999999999999999999998764 8899999999
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCCC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~~ 330 (474)
++||+||.|.+.+.+.+||..+| ..+..+++.|.++..+...+
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99999999999999999999999 89999999999998766544
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=224.90 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=156.2
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|+-.+++++||.... ..+.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999999988 4699999999999766
Q ss_pred CCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcc
Q 011975 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (474)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~k 289 (474)
.................. .+.............+|+|+||||.|...+|..+|+.||.|..|.|++.+..+. .
T Consensus 86 ~r~e~~~~~e~~~veK~~------~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-c 158 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPI------EQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-C 158 (678)
T ss_pred ccchhcccccchhhhccc------ccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-c
Confidence 554321111100000000 000000011122356999999999999999999999999999999998765544 5
Q ss_pred cEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCCC
Q 011975 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (474)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~~ 330 (474)
|||||+|....+|..||..+| ..|+||+|-|.||.++....
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 999999999999999999999 99999999999999876543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.5e-27 Score=199.23 Aligned_cols=169 Identities=24% Similarity=0.402 Sum_probs=152.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~ 204 (474)
.+...++|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++||..+++ .|..+.|.|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred EcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC
Q 011975 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
++..... ......|||.+||..+|..+|.++|++||.|..-+|+.|.-
T Consensus 117 yARPSs~--------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 117 YARPSSD--------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred eccCChh--------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 9864322 22335899999999999999999999999999999999999
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEecccC
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDG 326 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a~~~ 326 (474)
+|.+||.+||.|+...+|+.||..|| ..--| .+|.|+|+...
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999999999999999999999 55555 67999999754
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=6.8e-26 Score=232.15 Aligned_cols=193 Identities=18% Similarity=0.265 Sum_probs=142.1
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccC------------CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQY------------GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~------------G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
..+...++|||+|||+++|+++|++||..| +.|..+. ..+.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345668899999999999999999999975 2333333 34568999999999999999996 5
Q ss_pred C-CccCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhcc
Q 011975 193 Q-KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKY 271 (474)
Q Consensus 193 ~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 271 (474)
+ ..|.|+.|.|................. ........................++|||+|||+.+|+++|+++|+.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVS---QKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCC---CCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5 568899998875543221100000000 000000000000000111122345799999999999999999999999
Q ss_pred CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 272 GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 272 G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
|.|..|.|+++..+|.++|||||+|.+.++|..||..|+ ..|.|+.|.|.++....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999999999999999999 99999999999997543
No 18
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=206.29 Aligned_cols=175 Identities=27% Similarity=0.540 Sum_probs=159.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
+.++|||++|++++|++.|+++|.+||+|.+|.|++|+.+++++||+||+|.+++.+.++|....+.|.+|.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
......... .....+|||++||..+++++|++.|.+||.|..+.|+.|..+.++
T Consensus 85 r~~~~~~~~--------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 85 REDQTKVGR--------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred ccccccccc--------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 554433211 114569999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecccCCCC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~~~~~ 329 (474)
+||+||.|.+.+++.+++...-+.|+++.+.|..|.++...
T Consensus 139 rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccceeeEeccccccceecccceeeecCceeeEeeccchhhc
Confidence 99999999999999999988779999999999999987643
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.9e-25 Score=224.79 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=143.4
Q ss_pred CCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~ 204 (474)
...+++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|..||..|++ .|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999863 68999999999999999999885 5899999999
Q ss_pred EcccCCCCCCCcCcc-cc----ccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCC--eeEe
Q 011975 205 LASIGPATTPAVAST-AT----HQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE--IEEG 277 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v 277 (474)
++............. .. ........................++.+|||+|||.++|+++|+++|+.||. |..|
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 986543221110000 00 0000000000000000011112346789999999999999999999999998 8888
Q ss_pred EeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeE------EEEEeccc
Q 011975 278 PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI------LNCQRAID 325 (474)
Q Consensus 278 ~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~------l~v~~a~~ 325 (474)
+++... +..+++|||+|.+.++|.+||..|| ..|.++. |+|.|+.+
T Consensus 427 k~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 427 KFFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EEecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 887543 2358999999999999999999999 8898874 88888865
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=204.92 Aligned_cols=179 Identities=21% Similarity=0.426 Sum_probs=154.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~ 206 (474)
.--|+|||+.|.+++.++.|+..|.+||+|.+|.+.+|+.|+++||||||+|.-++.|+.|++.+|+ .+.||.|.|.+.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999995 579999999865
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
+.-+...+.. .........-++|||..+..+.++++|+.+|+.||.|++|.+.+++..+
T Consensus 191 sNmpQAQpiI---------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 191 SNMPQAQPII---------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred CCCcccchHH---------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 4332211110 0001111223589999999999999999999999999999999999999
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
.+|||+||+|.+..+-..||..+| ..|.|..|+|..+...+
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 999999999999999999999999 99999999998887544
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.2e-25 Score=224.39 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=136.7
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc--C-CccCCeeeEEEEc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP--Q-KKIGNRMTACQLA 206 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~--~-~~~~gr~~~v~~~ 206 (474)
+++|||+|||+++|+++|+++|++||.|.+|+|++ +|+||||+|.+.++|++||+.+ + ..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 68999999999999999999999999999999885 3579999999999999999975 3 5689999999999
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
............ ..........+|||.||++.+|+++|+++|+.||.|.+|.|+++..
T Consensus 76 ~~~~~~~~~~~~--------------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-- 133 (481)
T TIGR01649 76 TSQEIKRDGNSD--------------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-- 133 (481)
T ss_pred CCcccccCCCCc--------------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 654322111000 0000111235899999999999999999999999999999987642
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEecccC
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDG 326 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a~~~ 326 (474)
+++|||+|.+.++|.+|+..|| ..|.+ +.|+|.|+...
T Consensus 134 --~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 134 --VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred --ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4799999999999999999999 77754 68999998753
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.6e-25 Score=226.76 Aligned_cols=192 Identities=18% Similarity=0.242 Sum_probs=147.5
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+.+|+++|+++|+.||.|..+.|+.+..+|+++|||||+|.+.++|..||..|+ ..|.++.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4789999999999999999999999999999999999999999999999999999999999998 458999999999875
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCC----------CHHHHHHHHhccCCeeEeE
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEGP 278 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~ 278 (474)
............... . .... .............++.+|+|.||.... ..++|+++|.+||.|+.|.
T Consensus 375 ~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 375 GANQATIDTSNGMAP--V-TLLA-KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred CCCCCCccccccccc--c-cccc-ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 433221111000000 0 0000 000000001123456799999996421 2368999999999999999
Q ss_pred eeecC---CCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 279 LGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 279 i~~d~---~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
|+++. .++...|++||+|.+.++|.+||..|| ..|.|+.|.|.|...
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 98753 345668999999999999999999999 999999999999753
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=6.2e-25 Score=191.35 Aligned_cols=148 Identities=22% Similarity=0.422 Sum_probs=135.9
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcccCC
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIGP 210 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~~~~ 210 (474)
+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..++...|..||..|++ +|+|..|.|..+..+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999986 899999999999999998885 5999999999886552
Q ss_pred CCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCccc
Q 011975 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg 290 (474)
+ ..++|+|+||.+.++.++||..|++||.|..|.|+ |+
T Consensus 76 k----------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kd 113 (346)
T KOG0109|consen 76 K----------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KD 113 (346)
T ss_pred C----------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee--------cc
Confidence 2 33589999999999999999999999999999998 55
Q ss_pred EEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCC
Q 011975 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~ 329 (474)
|+||+|.-.++|..||+.|+ ..|.|++++|.++.++-+.
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 99999999999999999999 9999999999999886544
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.8e-23 Score=209.87 Aligned_cols=194 Identities=21% Similarity=0.304 Sum_probs=144.9
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~ 206 (474)
+..++|||+|||+.+|+++|+++|++||.|..|+|+.++.+|+++|||||+|.+.++|.+||..|++ .|.|+.|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999998999999999999999999999999884 589999999997
Q ss_pred ccCCCCCCCcCcccccc------------------------------------------cccccccccc----------c
Q 011975 207 SIGPATTPAVASTATHQ------------------------------------------HQHQHQHQHQ----------H 234 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~----------~ 234 (474)
................. .......... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 53211110000000000 0000000000 0
Q ss_pred ------cccccccccccccceEEccCCCCCCC----------HHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcC
Q 011975 235 ------QHQQHHQQSEYTQRKIFVSNVGSELE----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (474)
Q Consensus 235 ------~~~~~~~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (474)
.............++|+|.||....+ .++|++.|++||.|+.|.|.. ..+.|++||+|.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~ 419 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSS 419 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECC
Confidence 00000001235678999999955443 368999999999999999863 3458999999999
Q ss_pred HHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 299 VDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 299 ~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
+++|.+|+..|| ..|+|+.|.|.+...
T Consensus 420 ~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 420 VDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999999 999999999998754
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=3.9e-24 Score=207.98 Aligned_cols=173 Identities=25% Similarity=0.354 Sum_probs=147.6
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~---g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
+|||.||++++|.++|..+|.+.|.|.+|.|...+.. -.|.|||||+|.++++|+.|++.|+ ..|.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 4999999999999999999999999999988766532 2467999999999999999999999 66999999999997
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
..+..... . ........++|+|+|||+.++..+|+++|..||.|.+|+|+.....+.
T Consensus 597 ~k~~~~~g--K---------------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a 653 (725)
T KOG0110|consen 597 NKPASTVG--K---------------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGA 653 (725)
T ss_pred Cccccccc--c---------------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchh
Confidence 22221111 0 011112267999999999999999999999999999999998766778
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
++|||||+|-++.+|.+|+.+|. ..|.||+|.+.||....
T Consensus 654 ~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 654 HRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 89999999999999999999999 88999999999998643
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=185.55 Aligned_cols=199 Identities=20% Similarity=0.307 Sum_probs=153.0
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC--ccCC--eeeEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGN--RMTACQ 204 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~--~~~g--r~~~v~ 204 (474)
+.|+|||+-|...-.|+|++.+|..||.|.+|.+++.. +|.+||||||.|.+..+|+.||..|++ ++.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56799999999999999999999999999999999887 899999999999999999999999994 3544 456677
Q ss_pred EcccCCCCCC--------------CcC-----------------------------------------------------
Q 011975 205 LASIGPATTP--------------AVA----------------------------------------------------- 217 (474)
Q Consensus 205 ~~~~~~~~~~--------------~~~----------------------------------------------------- 217 (474)
++..+..... +..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 7642222100 000
Q ss_pred -ccccccccc--------------------------------cc--------cccccccc--------------------
Q 011975 218 -STATHQHQH--------------------------------QH--------QHQHQHQH-------------------- 236 (474)
Q Consensus 218 -~~~~~~~~~--------------------------------~~--------~~~~~~~~-------------------- 236 (474)
........+ .. ......+.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000000000 00 00000000
Q ss_pred ------------------cccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcC
Q 011975 237 ------------------QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (474)
Q Consensus 237 ------------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (474)
-.......+.++.|||..||....+.+|.++|-+||.|++.+|+.|+.|+++|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00002345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CccCCeEEEEEecccCCC
Q 011975 299 VDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 299 ~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
+.+|..||..+| ..|.-++|+|.+.+++..
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999 899999999999877653
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.4e-23 Score=195.08 Aligned_cols=151 Identities=21% Similarity=0.392 Sum_probs=139.4
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcccCC
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIGP 210 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~~~~ 210 (474)
.|||+ +++|+..|.++|+++|.|++|+|.+|. | +-|||||.|.++++|.+||..+|. .|.|+.|+|.|+..++
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 69999 999999999999999999999999998 6 999999999999999999999994 5899999999986543
Q ss_pred CCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCccc
Q 011975 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg 290 (474)
. .|||.||+..++...|.++|+.||.|++|++.++. .| ++|
T Consensus 77 ~-------------------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg 117 (369)
T KOG0123|consen 77 S-------------------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKG 117 (369)
T ss_pred c-------------------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-cee
Confidence 3 39999999999999999999999999999999985 44 999
Q ss_pred EEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCC
Q 011975 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
| ||+|.+.++|.+||..+| ..+.++.|.|.....+..
T Consensus 118 ~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 118 Y-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred e-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9 999999999999999999 889999999988876543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.4e-23 Score=189.07 Aligned_cols=199 Identities=23% Similarity=0.316 Sum_probs=155.5
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc--c--CCeeeEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--I--GNRMTACQ 204 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~--~--~gr~~~v~ 204 (474)
..++|||+-|+..+||.+|+++|++||.|++|+|++|. .+.|||||||.|.+.+.|..||+.+|+. + +...|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 46789999999999999999999999999999999998 8999999999999999999999999954 4 56789999
Q ss_pred EcccCCCCCCCc-----------------------------------------------------Cccccc---------
Q 011975 205 LASIGPATTPAV-----------------------------------------------------ASTATH--------- 222 (474)
Q Consensus 205 ~~~~~~~~~~~~-----------------------------------------------------~~~~~~--------- 222 (474)
|+.......... ......
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 985332220000 000000
Q ss_pred ------cc---cccc-ccccccc-----cc--------------------------------------------------
Q 011975 223 ------QH---QHQH-QHQHQHQ-----HQ-------------------------------------------------- 237 (474)
Q Consensus 223 ------~~---~~~~-~~~~~~~-----~~-------------------------------------------------- 237 (474)
.. ..+. .+..+.. ..
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 00 0000 0000000 00
Q ss_pred -----------------------------------------------------ccccccccccceEEccCCCCCCCHHHH
Q 011975 238 -----------------------------------------------------QHHQQSEYTQRKIFVSNVGSELEPQKL 264 (474)
Q Consensus 238 -----------------------------------------------------~~~~~~~~~~~~l~V~nLp~~~t~~~L 264 (474)
.......+.+..|||.+||.+.-+.+|
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 000234556788999999999999999
Q ss_pred HHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCC
Q 011975 265 LAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 265 ~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
...|..||.|.+.+++.|+.|+-+|+|+||.|++..+|..||..|| ..|..++|+|.+.+++..
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999999999999999 899999999999877553
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=1.2e-23 Score=199.39 Aligned_cols=192 Identities=22% Similarity=0.351 Sum_probs=161.4
Q ss_pred ccccCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCee
Q 011975 121 RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200 (474)
Q Consensus 121 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~ 200 (474)
......+.+.++||+-.|+..++..+|.+||+.+|.|..|+||.|+.+++++|.|||+|.+.+.+..||..-+..+.|-.
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 44556677889999999999999999999999999999999999999999999999999999999999987778899999
Q ss_pred eEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEee
Q 011975 201 TACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG 280 (474)
Q Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 280 (474)
|.|+........... .+.+ ........+-..|||+||.+++|+++|+.+|++||.|..|.+.
T Consensus 250 v~vq~sEaeknr~a~-~s~a-----------------~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~ 311 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAAN-ASPA-----------------LQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLT 311 (549)
T ss_pred eEecccHHHHHHHHh-cccc-----------------ccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeec
Confidence 999887533222100 0000 0001112222349999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCCC
Q 011975 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (474)
Q Consensus 281 ~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~~ 330 (474)
+|..||+++||+||+|.+.++|.+|+..|| ..|.||.|+|.....+....
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 998899999999999999999999999999 99999999999887765443
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=8.1e-22 Score=170.34 Aligned_cols=139 Identities=19% Similarity=0.367 Sum_probs=119.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
...|||||+||..++|++-|..||.+.|.|..++|+.+. +.|.|+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hcccccc
Confidence 446899999999999999999999999999999999872 4455554
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
.......+ .....--|||+-|...++-++||+.|.+||.|.+++|+||..|++
T Consensus 50 ~p~nQsk~---------------------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K 102 (321)
T KOG0148|consen 50 APGNQSKP---------------------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK 102 (321)
T ss_pred CcccCCCC---------------------------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCc
Confidence 32111111 111134799999999999999999999999999999999999999
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
+|||+||.|-+.++|+.||..|| ..|..|.|+-.||..++
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 99999999999999999999999 99999999999998777
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=9.2e-20 Score=170.79 Aligned_cols=174 Identities=18% Similarity=0.321 Sum_probs=139.8
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
-....-|.+++||++||+++|.+||+.++ |+++.+.+ .+|+..|-|||+|.+.+++++||++....+.+|.|.|..+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 34456799999999999999999999994 67765444 3799999999999999999999999889999999999988
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeE-eEeeecCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKAT 285 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~d~~~ 285 (474)
............ .........+|.+++||+.||+++|.+||+..-.|.. |.++.+ ..
T Consensus 84 ~~~e~d~~~~~~---------------------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~r 141 (510)
T KOG4211|consen 84 GGAEADWVMRPG---------------------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QR 141 (510)
T ss_pred CCccccccccCC---------------------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CC
Confidence 654432111000 0111134458999999999999999999998766655 445555 46
Q ss_pred CCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 286 GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
+++.|-|||+|.+.+.|++||......|..|.|.|-.+..
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 7899999999999999999999988889999999987763
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-20 Score=178.47 Aligned_cols=170 Identities=26% Similarity=0.440 Sum_probs=146.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~ 206 (474)
++.+.|||.||+.+++..+|.++|+.||.|++|+|.++. .| ++|| ||+|.+.+.|.+||+.+++. +.++.|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 334449999999999999999999999999999999998 66 9999 99999999999999999966 68999999888
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
..+......... ....-+.++|.|++..++++.|..+|..+|.|..+.++++. .+
T Consensus 151 ~~~~er~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g 205 (369)
T KOG0123|consen 151 ERKEEREAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IG 205 (369)
T ss_pred cchhhhcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CC
Confidence 655443322111 12233589999999999999999999999999999999985 67
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
++++|+||.|.++++|..|+..++ ..+.+..+.|..+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 799999999999999999999999 778889999988876
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=7.8e-20 Score=152.01 Aligned_cols=84 Identities=23% Similarity=0.464 Sum_probs=78.9
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||..|+ ..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345699999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
..++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86554
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=4.4e-19 Score=177.51 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=75.4
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~ 207 (474)
..++|||+|||+++++++|+++|+.||.|.+|+|++++.++++||||||+|.+.++|.+||..+|. .|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999999998999999999999999999999999995 5999999999876
Q ss_pred c
Q 011975 208 I 208 (474)
Q Consensus 208 ~ 208 (474)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=2.9e-18 Score=146.03 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=140.9
Q ss_pred CcceEEEcCCCCCCCHhHHHH----HhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEE
Q 011975 129 VHRKIFVHGLGWDTKAETLID----AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~----~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v 203 (474)
.+.||||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|..|+..|++. +.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999987665 6789999999999999999999999976 79999999
Q ss_pred EEcccCCCCCCCcCccccccccc-----cc-------cccc-----ccccccc-ccccccccceEEccCCCCCCCHHHHH
Q 011975 204 QLASIGPATTPAVASTATHQHQH-----QH-------QHQH-----QHQHQQH-HQQSEYTQRKIFVSNVGSELEPQKLL 265 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~-----~~~~~~~-~~~~~~~~~~l~V~nLp~~~t~~~L~ 265 (474)
++|..+..........-...... .. .... ....... .....++..+||+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99986554322211000000000 00 0000 0000000 02335677899999999999999999
Q ss_pred HHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC-CeEEEEEecc
Q 011975 266 AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAI 324 (474)
Q Consensus 266 ~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~-g~~l~v~~a~ 324 (474)
.+|.+|.....|+++... +++|||+|.+...|..|...+. ..|- ...+.|.++.
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998764 8999999999999999998888 4443 6777776653
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=1.1e-18 Score=165.83 Aligned_cols=190 Identities=19% Similarity=0.316 Sum_probs=139.0
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~~~ 209 (474)
++|||+||.+++|+++|+.+|++||.|..|.+.+|..||+++||+||+|.+.++|.+|+..||+ .|.||.|.|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3499999999999999999999999999999999999999999999999999999999999995 579999998776433
Q ss_pred CCCCCCcCcccccc-----c------cccc--------------------cc---------ccccccccc-------ccc
Q 011975 210 PATTPAVASTATHQ-----H------QHQH--------------------QH---------QHQHQHQQH-------HQQ 242 (474)
Q Consensus 210 ~~~~~~~~~~~~~~-----~------~~~~--------------------~~---------~~~~~~~~~-------~~~ 242 (474)
.............. . ...+ .. ......... .+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 22221100000000 0 0000 00 000000000 112
Q ss_pred cccccceEEccCCCCCCC----------HHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C
Q 011975 243 SEYTQRKIFVSNVGSELE----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (474)
...++.||.|.|+-...| .++|.+-+.+||.|..|.|.+. +-||.||.|.+.+.|..|+.+|| .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 226678999999832222 3678888999999998887433 35999999999999999999999 9
Q ss_pred ccCCeEEEEEeccc
Q 011975 312 NFEGHILNCQRAID 325 (474)
Q Consensus 312 ~~~g~~l~v~~a~~ 325 (474)
+|.|+.|.+.|-..
T Consensus 514 WF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 514 WFAGRMITAKYLPL 527 (549)
T ss_pred hhccceeEEEEeeh
Confidence 99999999988643
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=6.1e-18 Score=155.56 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=147.4
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
...|.|||.|||+++.+++|+++|. +.|+|+.|.++.|. +|++||||.|+|+++|.+++|++.|+ ..+.||.|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999995 68999999999998 99999999999999999999999999 569999999987
Q ss_pred cccCCCCCCCcCc----------------------------------cccccccccc-----ccc-------------c-
Q 011975 206 ASIGPATTPAVAS----------------------------------TATHQHQHQH-----QHQ-------------H- 232 (474)
Q Consensus 206 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~-----~~~-------------~- 232 (474)
............. ........++ ... .
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 6532111000000 0000000000 000 0
Q ss_pred cccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C
Q 011975 233 QHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (474)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (474)
............+...++||.||.+.+....|.+.|.-.|.|..|.+-.|+ .|.++|||.|+|.++-.|..||..++ .
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 000000112345567799999999999999999999999999999998886 56999999999999999999999999 6
Q ss_pred ccCCeEEEEEecc
Q 011975 312 NFEGHILNCQRAI 324 (474)
Q Consensus 312 ~~~g~~l~v~~a~ 324 (474)
-+..++..+++..
T Consensus 280 g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 280 GLFDRRMTVRLDR 292 (608)
T ss_pred CCccccceeeccc
Confidence 7777887777744
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=8.8e-17 Score=131.37 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=131.3
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~ 206 (474)
..+++|||+|||.++.+.+|.++|-+||.|..|.|...+ ..-.||||+|.++.+|+.||.--++. +.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356899999999999999999999999999999875533 34579999999999999999988854 89999999998
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
.................. .........-+.......+|.|.+||.+.++++|+.+....|.|-...+.+|
T Consensus 81 rggr~s~~~~G~y~gggr------gGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGR------GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---- 150 (241)
T ss_pred cCCCcccccccccCCCCC------CCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----
Confidence 755422211110000000 0000000011223334568999999999999999999999999988888765
Q ss_pred CcccEEEEEEcCHHHHHHHHHcCC-Ccc--CCeEEEEE
Q 011975 287 KPKGFCLFVYKTVDAAKKALEEPH-KNF--EGHILNCQ 321 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~~--~g~~l~v~ 321 (474)
|++.|+|...++-.-|+++|. ..+ .|-...+.
T Consensus 151 ---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 151 ---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 489999999999999999998 444 45444333
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=1.3e-17 Score=149.58 Aligned_cols=194 Identities=15% Similarity=0.255 Sum_probs=145.0
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCC
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN 198 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g 198 (474)
..++.|||.|||.++|.+++.++|++||.|. .|+|.++. .|+.||-|++.|-..+++..||..|+. .|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4466799999999999999999999999875 57888887 699999999999999999999999994 5899
Q ss_pred eeeEEEEcccCCCCCCCcCccccccccccccccccc------cccccccccccccceEEccCCCC----CCC-------H
Q 011975 199 RMTACQLASIGPATTPAVASTATHQHQHQHQHQHQH------QHQQHHQQSEYTQRKIFVSNVGS----ELE-------P 261 (474)
Q Consensus 199 r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~ 261 (474)
+.|+|..|..........................+. .............++|.|+||-. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999997554433222222111111111110000 01112344455678999999842 223 4
Q ss_pred HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 262 ~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
++|++-+++||.|.+|.|.- ..+.|.+.|.|.+.++|..||+.|+ +.|+||.|..+.-...
T Consensus 291 edl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 67778899999999998863 3568999999999999999999999 9999999998776543
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.6e-17 Score=138.22 Aligned_cols=84 Identities=32% Similarity=0.665 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..+++|||+|||+++|+++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 446789999999999999999999999999999999999999999999999999999999999887 6699999999998
Q ss_pred ccCCC
Q 011975 207 SIGPA 211 (474)
Q Consensus 207 ~~~~~ 211 (474)
...+.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 75443
No 41
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=3.2e-17 Score=139.86 Aligned_cols=86 Identities=34% Similarity=0.568 Sum_probs=80.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecc
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~ 324 (474)
..-++|||++|+|.++.+.|+++|++||.|+++.|+.|+.+++||||+||+|.+.++|.+|++..|..|+||+..|.+|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 011975 325 DGPKPG 330 (474)
Q Consensus 325 ~~~~~~ 330 (474)
...+++
T Consensus 90 lg~~pR 95 (247)
T KOG0149|consen 90 LGGKPR 95 (247)
T ss_pred hcCccC
Confidence 755443
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.72 E-value=6.3e-16 Score=145.29 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=135.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
....|.+++||+.||++||.+||+..-.|.. |.++.+. .+++.|-|||+|++.+.|++||..+...|..|.|.|..++
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4468999999999999999999998866666 3344544 7889999999999999999999999999999999998875
Q ss_pred cCCCCCCC-----------cCc--ccccc--------c-----cc-----------------c-----------cccccc
Q 011975 208 IGPATTPA-----------VAS--TATHQ--------H-----QH-----------------Q-----------HQHQHQ 233 (474)
Q Consensus 208 ~~~~~~~~-----------~~~--~~~~~--------~-----~~-----------------~-----------~~~~~~ 233 (474)
........ ... ..... . .. . ......
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 32111000 000 00000 0 00 0 000000
Q ss_pred c-------cccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHH
Q 011975 234 H-------QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (474)
Q Consensus 234 ~-------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (474)
. ............+..++.++||+..++.+|..+|+..-.+ .|+|-.. .+|+..|-|+|+|.|+++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 0 0000001112223789999999999999999999987666 5665554 57999999999999999999999
Q ss_pred HcCCCccCCeEEEEEec
Q 011975 307 EEPHKNFEGHILNCQRA 323 (474)
Q Consensus 307 ~~~~~~~~g~~l~v~~a 323 (474)
.+-...+..+.|.+...
T Consensus 339 skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLN 355 (510)
T ss_pred ccCCcccCcceeeeccc
Confidence 98887788887776443
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=155.30 Aligned_cols=193 Identities=21% Similarity=0.247 Sum_probs=137.5
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~ 204 (474)
.....+.|+|+|||..+..++|..+|..||.|..|. +. + .|. -|+|+|.+..+|.+|++.+... +....+++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvl-lp-~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVL-LP-P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceee-cC-c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 445668899999999999999999999999999883 32 2 232 2999999999999999999944 666677777
Q ss_pred EcccCCCCCCCc-----Cccccc-----ccccccccccccc-------cccccc-ccccccceEEccCCCCCCCHHHHHH
Q 011975 205 LASIGPATTPAV-----ASTATH-----QHQHQHQHQHQHQ-------HQQHHQ-QSEYTQRKIFVSNVGSELEPQKLLA 266 (474)
Q Consensus 205 ~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~ 266 (474)
|+........+. ...... ............. ...... ......++|||.||++.+|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 775444331110 000000 0000000000000 000001 1111223499999999999999999
Q ss_pred HHhccCCeeEeEeeecCCC---CCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 267 FFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 267 ~F~~~G~i~~v~i~~d~~~---g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
+|...|.|.+|.|...+.. -.|.|||||+|.+.++|..|++.|+ ..|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999998776422 2356999999999999999999999 99999999999998
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=4e-17 Score=139.26 Aligned_cols=84 Identities=44% Similarity=0.791 Sum_probs=79.3
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
...++|||++|++.++.++|+++|++||+|+++.|+.|+.+|+||||+||+|++.++|.+|++.-+-.|.||+..|+++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 011975 208 IGPA 211 (474)
Q Consensus 208 ~~~~ 211 (474)
...+
T Consensus 90 lg~~ 93 (247)
T KOG0149|consen 90 LGGK 93 (247)
T ss_pred hcCc
Confidence 7444
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=7.9e-16 Score=129.69 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=125.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEeccHHHHHHHHHccCCcc----CCeeeE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-KVSGKSKGYGFILFKTRSGARKALKEPQKKI----GNRMTA 202 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d-~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~----~gr~~~ 202 (474)
..-|||||.+||.++...+|..+|..|--.+.+.|... +...-++-+|||.|.+...|..|+.+||+.. .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999877776665443 3233566899999999999999999999763 678899
Q ss_pred EEEcccCCCCCCCcCcccccc----------cccc--ccccc--------------------------------------
Q 011975 203 CQLASIGPATTPAVASTATHQ----------HQHQ--HQHQH-------------------------------------- 232 (474)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~-------------------------------------- 232 (474)
|.++....+..+......+.. .... .....
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 999876655433322221100 0000 00000
Q ss_pred ----cccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHc
Q 011975 233 ----QHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308 (474)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~ 308 (474)
+.............+.||||.||..+||+++|+.+|+.|-....++|... .....|||+|.+.+.|..|+..
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHH
Confidence 00000000122334679999999999999999999999987776666321 2256799999999999999988
Q ss_pred CC
Q 011975 309 PH 310 (474)
Q Consensus 309 ~~ 310 (474)
|.
T Consensus 268 lq 269 (284)
T KOG1457|consen 268 LQ 269 (284)
T ss_pred hh
Confidence 76
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=9.8e-15 Score=133.75 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=145.6
Q ss_pred cceEEEcCCC-CCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 130 HRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 130 ~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
+..|.|.||. ..+|.+-|..+|.-||.|..|+|+.++.+ -|+|+|.+...|+.|++.|+ ..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6789999997 66899999999999999999999998743 59999999999999999999 56999999999987
Q ss_pred cCCCCCCCcCccc---cccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC
Q 011975 208 IGPATTPAVASTA---THQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 208 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
......+...... .........++.............+++.+|++.|+|.++++++|+.+|...|..++...+.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 6655543322222 2222222222333333333444567788999999999999999999999998876655432
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCC-eEEEEEeccc
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HILNCQRAID 325 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g-~~l~v~~a~~ 325 (474)
++.+-+|++++.+.++|..|+..++ +.+.. ..|+|+|+++
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3447799999999999999999998 77765 5899999865
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=1.3e-15 Score=145.06 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=78.7
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|.+||..|+ ..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
|+.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98653
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=8.7e-16 Score=132.64 Aligned_cols=165 Identities=19% Similarity=0.324 Sum_probs=127.0
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~~~ 209 (474)
..|||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..||..++.. |++-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999986543 68999999999999999999954 67766777777532
Q ss_pred CCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcc
Q 011975 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (474)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~k 289 (474)
....... ... ................+.|+|.||+..+.+.+|...|.++|.+....+ ..
T Consensus 74 ~~~~g~~--~~g----------~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~ 133 (216)
T KOG0106|consen 74 RRGRGRP--RGG----------DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RR 133 (216)
T ss_pred ccccCCC--CCC----------CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hc
Confidence 1111000 000 000001111223445678999999999999999999999999955444 27
Q ss_pred cEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
+++||+|.+.++|..||..|+ ..|.++.|.|...
T Consensus 134 ~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 899999999999999999999 9999999999444
No 49
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.5e-15 Score=130.09 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=77.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|.|.||+.++++++|+++|.+||.|.+|.|.+|+.||.+||||||+|.+.++|.+||..|| .-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999 88999999999998
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 50
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=6.5e-16 Score=140.10 Aligned_cols=192 Identities=16% Similarity=0.231 Sum_probs=134.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhcc---C-CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQ---Y-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~---~-G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.-.|.+++||+++|+.++.+||.+ . |.++.|.+++.+ +|+..|-|||.|..+++|+.||.++...|..|.|.+..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346889999999999999999963 2 244566555544 89999999999999999999999998888888887766
Q ss_pred cccCCCCCCCcCccc-cccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCC-eeE--eEeee
Q 011975 206 ASIGPATTPAVASTA-THQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEE--GPLGI 281 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~--v~i~~ 281 (474)
+.............. ........ ..........-.......+|.+++||+..+.++|..||..|-. |.. |+++.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~s--p~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTS--PLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCC--CCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 532111100000000 00000000 0000001111122223679999999999999999999999865 333 67777
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
+ ..|++.|-|||+|.+.++|..|....+ +....|.|+|-.+..
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 6 579999999999999999999999988 556699999988764
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.4e-15 Score=127.24 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=75.8
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~ 207 (474)
+..+|.|.||+.++++++|.+||.+||.|..|.|.+|+.||++||||||.|.+.++|.+||..|++. +.+-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6778999999999999999999999999999999999999999999999999999999999999966 788889999986
Q ss_pred c
Q 011975 208 I 208 (474)
Q Consensus 208 ~ 208 (474)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 4
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5.5e-15 Score=108.01 Aligned_cols=69 Identities=30% Similarity=0.609 Sum_probs=65.9
Q ss_pred EEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEE
Q 011975 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (474)
Q Consensus 250 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~ 319 (474)
|||+|||..+|+++|+++|++||.|..+.+..+ .++++++||||+|.+.++|.+|+..++ ..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 688999999999999999999999999 899999885
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=2e-14 Score=136.21 Aligned_cols=169 Identities=22% Similarity=0.344 Sum_probs=125.0
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+++|+++|.++|.+||.|..|+|..++.+++++|||||.|.+.++|..|+..++ ..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999 669999999999753
Q ss_pred --CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC
Q 011975 209 --GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (474)
Q Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g 286 (474)
......... ......................+++.+++..++...+..+|..++.+..+.+.......
T Consensus 195 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (306)
T COG0724 195 ASQPRSELSNN----------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGK 264 (306)
T ss_pred ccccccccccc----------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCc
Confidence 111111100 00000000012223344456799999999999999999999999999877776654444
Q ss_pred CcccEEEEEEcCHHHHHHHHHc
Q 011975 287 KPKGFCLFVYKTVDAAKKALEE 308 (474)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~ 308 (474)
....+.++.+.....+..++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 265 IPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccccccchhHHHhhhhhhcc
Confidence 4444444445444444444433
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.6e-14 Score=127.35 Aligned_cols=195 Identities=16% Similarity=0.269 Sum_probs=137.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
....+|||..+.++.+++||+..|+.||+|..|.+-+++..+.+|||+||+|.+..+-..||..+| -.|.|..|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 345689999999999999999999999999999999999889999999999999999999999999 5689999998776
Q ss_pred ccCCCCC-----------------------------------------CCcCccccccccc-----c-------------
Q 011975 207 SIGPATT-----------------------------------------PAVASTATHQHQH-----Q------------- 227 (474)
Q Consensus 207 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~-----~------------- 227 (474)
...+... ....+.+...... +
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 4222210 0000000000000 0
Q ss_pred ----------------------------ccccccccc----------------ccc---------------ccccccccc
Q 011975 228 ----------------------------HQHQHQHQH----------------QQH---------------HQQSEYTQR 248 (474)
Q Consensus 228 ----------------------------~~~~~~~~~----------------~~~---------------~~~~~~~~~ 248 (474)
......+.. ... ..-.....+
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 000000000 000 011223457
Q ss_pred eEEccCC--CCCCC---HHHHHHHHhccCCeeEeEeeecCCCCCcc----cEEEEEEcCHHHHHHHHHcCC-CccCCeEE
Q 011975 249 KIFVSNV--GSELE---PQKLLAFFSKYGEIEEGPLGIDKATGKPK----GFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (474)
Q Consensus 249 ~l~V~nL--p~~~t---~~~L~~~F~~~G~i~~v~i~~d~~~g~~k----g~afV~F~~~~~A~~Al~~~~-~~~~g~~l 318 (474)
.+.++|+ |.+++ +.+|++-|.+||.|.+|.|...+.+..-. --.||+|....++.+|..+|+ +.|.||++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 8888998 45554 46899999999999999998776443211 136999999999999999999 88999988
Q ss_pred EEEe
Q 011975 319 NCQR 322 (474)
Q Consensus 319 ~v~~ 322 (474)
....
T Consensus 528 vAE~ 531 (544)
T KOG0124|consen 528 VAEV 531 (544)
T ss_pred ehhh
Confidence 7543
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1e-14 Score=106.58 Aligned_cols=69 Identities=42% Similarity=0.620 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeE
Q 011975 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (474)
Q Consensus 133 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~ 202 (474)
|||+|||.++|+++|+++|++||.|..+.++.+ .++++++||||+|.+.++|.+|++.+++ .+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 5899999999999999999999998884 57888774
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=121.23 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=78.1
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
.....+|.|-||.+.+|.++|+.+|++||.|-+|.|++|+-|..++|||||.|....+|+.|+.+|+ ..|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3445699999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccC
Q 011975 323 AIDG 326 (474)
Q Consensus 323 a~~~ 326 (474)
|.=.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8743
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.9e-14 Score=139.22 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=142.1
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~~ 208 (474)
...+||++||..+++.+++++...||.+...+++.|..+|.++||||.+|.++.....|+..++++ +.++.|.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 457999999999999999999999999999999999999999999999999999999999999966 7779999999876
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCC--CCC-C-------HHHHHHHHhccCCeeEeE
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVG--SEL-E-------PQKLLAFFSKYGEIEEGP 278 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp--~~~-t-------~~~L~~~F~~~G~i~~v~ 278 (474)
............. ................++..|.+.|+= ... . -++|+.-|.+||.|..|.
T Consensus 369 g~~~~~~~~~~~~--------~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ 440 (500)
T KOG0120|consen 369 GASNANVNFNISQ--------SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVE 440 (500)
T ss_pred cchhccccCCccc--------cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEe
Confidence 6544333222000 000000111112334455677777761 111 1 245666778999999999
Q ss_pred eeec-C--CCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 279 LGID-K--ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 279 i~~d-~--~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
|.++ . ...-..|..||+|.+.+++++|+..|+ ..|.+|+|.+.|..
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 9887 2 223446789999999999999999999 99999999998864
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1e-14 Score=112.04 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=76.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..+||||+||++.+||++|.++|+++|.|..|.+-.|+.+..+=|||||+|.+.++|..||+.++ ..|+.++|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999 99999999999975
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=1.7e-13 Score=126.58 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=67.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+|||+++|++.|++-|..||+|.++.|+ +.|+++| .|.|.++++|+.|+..++ ..|+||.|.|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45889999999999999999999999999999995 3578887 899999999999999999 9999999999873
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=2.5e-14 Score=104.40 Aligned_cols=69 Identities=28% Similarity=0.539 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeE
Q 011975 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (474)
Q Consensus 133 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~ 202 (474)
|||+|||+++++++|+++|+.||.|..|+++.++. ++++|+|||+|.+.++|.+|+..++ ..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 9999999999999999999999999 668998874
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=111.43 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=74.9
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~ 206 (474)
..++||||+||++.+||+.|.++|+++|+|..|.+=.|+.+....|||||+|.+.++|..|++-++. .|..|.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4568999999999999999999999999999999999999999999999999999999999999995 589999999987
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=2.4e-14 Score=104.48 Aligned_cols=69 Identities=30% Similarity=0.583 Sum_probs=64.1
Q ss_pred EEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEE
Q 011975 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (474)
Q Consensus 250 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~ 319 (474)
|||+|||+++++++|+++|+.||.|..|++..++. +.++++|||+|.+.++|.+|+..++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 8999999999999999999999999 999999885
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=5.7e-14 Score=124.78 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|+.||.|.+|.|++++. ++|||||+|.+.++|..||. |+ ..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36999999999999999999999999999999998853 57999999999999999996 66 999999999999865
Q ss_pred C
Q 011975 326 G 326 (474)
Q Consensus 326 ~ 326 (474)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 64
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.2e-14 Score=123.21 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=78.6
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
..+-+||||.-|++.++|..|+..|+.||.|..|+|++|+.||+++|||||+|.+.-+...|.+..+ ..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 999999999988
Q ss_pred cccCC
Q 011975 323 AIDGP 327 (474)
Q Consensus 323 a~~~~ 327 (474)
-..+.
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 76543
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.4e-14 Score=127.74 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=76.7
Q ss_pred ccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
......++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+ ..-||||+||+|++.++|++|..+|| ..|.||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33445679999999999999999999999999999999876 45679999999999999999999999 9999999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
..|..+..
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987643
No 66
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=6.2e-14 Score=140.66 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=97.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccC--CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
..++|||+||+.++|+++|+++|++| |.|+.|++++ +||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998763 599999999999999999888 569999999999
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCe
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEI 274 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i 274 (474)
+................. . ....................+|++.||++.++++.|+++|..+|.|
T Consensus 304 Akp~~~~~~~~~~rg~gg---~-~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 304 AKPVDKKSYVRYTRGTGG---R-GKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred ccCCCcccccccccccCC---C-cccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 965433211100000000 0 0000000011112234456799999999999999999999999875
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.7e-15 Score=121.73 Aligned_cols=86 Identities=27% Similarity=0.397 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~ 205 (474)
=.++.-|||+|||++.|+.||..+|++||.|++|.+++|+.||+|+||||+.|.+..+...|+..+++ .|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999995 48999999988
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
.......
T Consensus 112 v~~Yk~p 118 (219)
T KOG0126|consen 112 VSNYKKP 118 (219)
T ss_pred cccccCC
Confidence 7655443
No 68
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2e-15 Score=123.24 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=77.3
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
.-|||+|||+..|+.+|..+|++||.|+.|.+++|+.||+|+||||+.|.+..+...|+..|| ..|.||.|+|.-....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999887665
Q ss_pred CCC
Q 011975 327 PKP 329 (474)
Q Consensus 327 ~~~ 329 (474)
..+
T Consensus 116 k~p 118 (219)
T KOG0126|consen 116 KKP 118 (219)
T ss_pred cCC
Confidence 544
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=6.6e-14 Score=124.35 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccC
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~ 209 (474)
.++|||+|||+.+|+++|++||+.||.|.+|+|+++.. ++|||||+|.+.++|+.||...+..|.+|.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 47999999999999999999999999999999998863 579999999999999999975557899999999998644
No 70
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.51 E-value=1.4e-13 Score=126.37 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=129.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeeeEEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTACQL 205 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~~v~~ 205 (474)
.++.|.+||||++++|++|..++.+||.|..+.+++-++ -|||+|.+.++|...+.... -.+.++.|.|++
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 678999999999999999999999999999998776542 59999999999888555544 347899999998
Q ss_pred cccCCCCCCCcCccccc----ccccccccccc--cc--ccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEe
Q 011975 206 ASIGPATTPAVASTATH----QHQHQHQHQHQ--HQ--HQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG 277 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 277 (474)
+................ ......+.... .. ...........-.+++|.|+-+.+|-+-|.++|++||.|.+|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 75433322221110000 00000000000 00 000011122234578899999999999999999999999988
Q ss_pred EeeecCCCCCcccE-EEEEEcCHHHHHHHHHcCC-Ccc-CC-eEEEEEeccc
Q 011975 278 PLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNF-EG-HILNCQRAID 325 (474)
Q Consensus 278 ~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~~-~g-~~l~v~~a~~ 325 (474)
.-+.. ..+| |+|+|.+.+.|..|...|+ +.| +| +.|++.|+..
T Consensus 181 iTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 181 ITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 76543 3566 9999999999999999999 544 45 6777777654
No 71
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=6.6e-14 Score=108.58 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=84.1
Q ss_pred ccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.....+..|||.++...+|+++|.+.|..||.|..|++-.|+.||-.||||+|+|.+...|.+|+..+| ..|.|.+|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 344456799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EecccCCCCCCCC
Q 011975 321 QRAIDGPKPGKSR 333 (474)
Q Consensus 321 ~~a~~~~~~~~~~ 333 (474)
.||..+.+.+..+
T Consensus 147 Dw~Fv~gp~~g~r 159 (170)
T KOG0130|consen 147 DWCFVKGPERGKR 159 (170)
T ss_pred EEEEecCCccCcc
Confidence 9999877654443
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.1e-14 Score=123.27 Aligned_cols=82 Identities=33% Similarity=0.526 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..-+||||.-|++++++.+|+..|+.||.|..|+|+.|+.||+++|||||+|.+..+...|.+..+ .+|.++.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999988 5699999999886
Q ss_pred ccC
Q 011975 207 SIG 209 (474)
Q Consensus 207 ~~~ 209 (474)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 533
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=101.73 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=70.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|++.|+ ..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 356899999999999999999999999999999976654 49999999999999999999999 89999999998865
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=111.87 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=72.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+||+..+++.+|..+|..||.|..|.|.+.+ .|||||+|+++.+|..|+..|+ ..|.|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35799999999999999999999999999999997654 8999999999999999999999 99999999999998
Q ss_pred cCCCC
Q 011975 325 DGPKP 329 (474)
Q Consensus 325 ~~~~~ 329 (474)
..+..
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 76653
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.4e-14 Score=117.89 Aligned_cols=82 Identities=20% Similarity=0.397 Sum_probs=78.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||++|...+|+.-|...|-+||.|..|.|+.|-.+.++|||+||+|...++|.+||..|| ..|.||+|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=111.75 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=71.1
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
-.++|||+||+..+++.+|..+|..||.|.+|+|-..+ -|||||+|.++.+|+.|+..|+ ..|+|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36799999999999999999999999999999998865 5899999999999999999999 55999999999987
Q ss_pred cCCC
Q 011975 208 IGPA 211 (474)
Q Consensus 208 ~~~~ 211 (474)
-.+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5554
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=122.24 Aligned_cols=81 Identities=19% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~ 205 (474)
....++|+|.|||+...+.||+..|.+||.|.+|.||.+. .-||||+||+|.+.++|++|-.+||+ .|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445789999999999999999999999999999999974 56999999999999999999999995 58999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 9755
No 78
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=6.8e-13 Score=108.81 Aligned_cols=78 Identities=23% Similarity=0.424 Sum_probs=69.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||..+-+.+|..+|-+||.|..|.+.. .-..-.||||+|++..+|..||..-+ ..++|+.|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 346999999999999999999999999999998843 33457899999999999999999999 89999999999986
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
..
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 53
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=1.2e-13 Score=115.28 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=76.9
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~~ 208 (474)
..+|.|-||.+-+|.++|..+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|+++|++ .|.|+.|.|+++..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999995 58999999999975
Q ss_pred CCC
Q 011975 209 GPA 211 (474)
Q Consensus 209 ~~~ 211 (474)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 544
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=6.3e-13 Score=98.31 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~ 206 (474)
..++-|||+|||+++|.+++.++|.+||.|..|+|=..+ ..+|.|||.|.+..+|.+|++.|.+. +.++.+.|.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 346789999999999999999999999999999987755 46899999999999999999999965 89999999887
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 5
No 81
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.43 E-value=2.3e-13 Score=125.54 Aligned_cols=179 Identities=21% Similarity=0.209 Sum_probs=144.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~ 207 (474)
..+++|++++...+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..||..... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467999999999999999999999999888888887777889999999999999999999998774 4555555544443
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
....... ............+.++|.||++.+++++|+.+|..+|.|..++++.++.++.
T Consensus 167 ~~~~~~~---------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 167 RRGLRPK---------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD 225 (285)
T ss_pred ccccccc---------------------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc
Confidence 2221000 0000112223334555999999999999999999999999999999999999
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~ 329 (474)
++||+||.|.+...+..++.. . ..+.++++.+.+..+++..
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 999999999999999999998 6 8899999999888766543
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=3.7e-13 Score=126.20 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=71.0
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCH--HHHHHHHHcCC-CccCCeEEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV--DAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~--~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
....+|||+||++.+|+++|+.+|..||.|.+|.|++. +| ||||||+|.+. .++.+||..|| ..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34569999999999999999999999999999999954 66 99999999987 78999999999 99999999999
Q ss_pred eccc
Q 011975 322 RAID 325 (474)
Q Consensus 322 ~a~~ 325 (474)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9986
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.6e-13 Score=115.24 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
...+|||+||++.+|+++|++||+.||.|.+|+|++|. .+++||||+|.++++|+.||.+.+..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999874 556899999999999999998777889999999988754
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.41 E-value=1.2e-11 Score=112.31 Aligned_cols=163 Identities=14% Similarity=0.193 Sum_probs=124.5
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeeeEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTACQ 204 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~~v~ 204 (474)
..+-.|.|++|-..+++.+|.+.++.||.|..|..+..+ ..|+|+|.+.+.|..|+.... -.+.|..-.+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 445689999999999999999999999999988776543 369999999999999987544 23566666666
Q ss_pred EcccCCCCCCCcCccccccccccccccccccccccccccccccceEE--ccCCCCCCCHHHHHHHHhccCCeeEeEeeec
Q 011975 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF--VSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d 282 (474)
++......+.. .........|. |-|--+.+|-+-|..++.+.|.|.+|.|++.
T Consensus 103 yStsq~i~R~g-------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 103 YSTSQCIERPG-------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK 157 (494)
T ss_pred cchhhhhccCC-------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec
Confidence 66433222211 11122223444 4565688999999999999999999999875
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCC-eEEEEEecccC
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG-HILNCQRAIDG 326 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g-~~l~v~~a~~~ 326 (474)
+ -=.|.|+|++.+.|.+|..+|| -.+.| ++|+|.||++.
T Consensus 158 --n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 158 --N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred --c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 2 2359999999999999999999 44555 78999999863
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.3e-12 Score=95.51 Aligned_cols=71 Identities=31% Similarity=0.577 Sum_probs=66.3
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
+|||+|||..++.++|+++|.+||.|..+.+.+++ +.++++|||+|.+.++|.+|+..++ ..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999999 88999998873
No 86
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=3e-13 Score=130.53 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=77.2
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|.+|++.|+ ..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999 5699999999999755
Q ss_pred CC
Q 011975 210 PA 211 (474)
Q Consensus 210 ~~ 211 (474)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.8e-12 Score=113.30 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=68.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
.+.+|||+||++.+|+++|++||+.||.|.+|+|++|. ..++||||+|.+.++|..||......|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 35699999999999999999999999999999999884 557899999999999999995444999999999988654
No 88
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=4.3e-13 Score=110.02 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=75.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
...||||+||+..++++.|+++|-+.|+|+.++|++|+.+...+|||||+|.+.++|.-|++.|| ..|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34699999999999999999999999999999999999999999999999999999999999999 88999999999987
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.1e-12 Score=123.16 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccH--HHHHHHHHccC-CccCCeeeEEEEc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR--SGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~--~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..+|||+||++++|+++|..+|..||.|.+|.|++. +| ||||||+|.+. .++.+||..|+ ..+.||.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 468999999999999999999999999999999944 66 99999999987 78999999999 4589999999998
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 5
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.3e-13 Score=112.94 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=78.4
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
..|+|||++|-.++|+.-|...|-+||.|..|.|..|-.+.++|||+||+|...++|.+||..++ ..|+||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45899999999999999999999999999999999999999999999999999999999999999 56999999999997
Q ss_pred cCCCC
Q 011975 208 IGPAT 212 (474)
Q Consensus 208 ~~~~~ 212 (474)
.....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 55443
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.2e-12 Score=94.01 Aligned_cols=70 Identities=37% Similarity=0.608 Sum_probs=65.9
Q ss_pred ccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 252 V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
|+|||..+++++|+++|+.||.|..+.|..++.++.++|+|||+|.+.++|..|+..++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999 88999998873
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.7e-12 Score=118.62 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=127.3
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCC-C--CCcce---EEEEEeccHHHHHHHHHccCCccCC
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV-S--GKSKG---YGFILFKTRSGARKALKEPQKKIGN 198 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~-~--g~skG---~afV~F~~~~~A~~Ai~~~~~~~~g 198 (474)
....-+++|||++||++++++.|...|..||.|.- ....... . -..+| |+|+.|.++.+++.-|.+.......
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 34456789999999999999999999999998743 2221111 1 13556 9999999999999988876642222
Q ss_pred eeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHh-ccCCeeEe
Q 011975 199 RMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIEEG 277 (474)
Q Consensus 199 r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v 277 (474)
-.+.|.....+.+. . ....... ....--........+.+||||++||.-++.++|..+|+ -||.|..|
T Consensus 333 ~yf~vss~~~k~k~--V-QIrPW~l--------aDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya 401 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKE--V-QIRPWVL--------ADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV 401 (520)
T ss_pred eEEEEecCcccccc--e-eEEeeEe--------ccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE
Confidence 22222222111110 0 0000000 00000011233445678999999999999999999999 79999999
Q ss_pred EeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC----CccCCeEEEEEecc
Q 011975 278 PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH----KNFEGHILNCQRAI 324 (474)
Q Consensus 278 ~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~----~~~~g~~l~v~~a~ 324 (474)
-|-+|++-+-++|-|-|+|.+..+-.+||.+-- +.=..++|.|+.-.
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 999998889999999999999999999998643 11123566665544
No 93
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.7e-12 Score=119.36 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=75.3
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc-CCeEEEEEe
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHILNCQR 322 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~-~g~~l~v~~ 322 (474)
..++-|||+.||.++.|++|.-||++.|.|-+++|+.|+.+|.+||||||+|.+.++|++||+.|| ..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999 666 588888877
Q ss_pred ccc
Q 011975 323 AID 325 (474)
Q Consensus 323 a~~ 325 (474)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 665
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=101.39 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=76.8
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.-.|||.++...+|+++|.+.|..||+|.+|++-.|+.||-.||||+|+|.+.+.|++||..+| ..|.+..|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999999 669999999999976
Q ss_pred CCC
Q 011975 209 GPA 211 (474)
Q Consensus 209 ~~~ 211 (474)
...
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 544
No 95
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=9.6e-11 Score=116.19 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..+|||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||.+....+|.+|+.+|. ..+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3488999999999999999999999999999998775 46899999999999999999998 5589999999999
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
...-
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 7543
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4e-12 Score=92.91 Aligned_cols=70 Identities=36% Similarity=0.579 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
+|||+|||..++.++|+++|.+||.|..++++.++ +.++|+|||+|.+.++|++|+..++ ..+.++.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 59999999999999999999999999999988876 7889999999999999999999988 5688888765
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2.3e-12 Score=124.43 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=78.2
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
++|||+|+|+.+++++|..+|+..|.|.+++++.|+.+|+++||+||+|.+.++|..|++.|| ..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999 9999999999999865
Q ss_pred CC
Q 011975 327 PK 328 (474)
Q Consensus 327 ~~ 328 (474)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1e-11 Score=91.21 Aligned_cols=73 Identities=33% Similarity=0.546 Sum_probs=67.3
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ .++++|||+|.+.++|..|+..++ ..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 779999999999999999999999 669999999864
No 99
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.7e-13 Score=137.08 Aligned_cols=149 Identities=21% Similarity=0.186 Sum_probs=132.4
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
.+..++||+||++.+.+.+|..+|..++.|..++|....++++.+|+|||.|..++.+.+||......+.++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK-------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence 345689999999999999999999999999998888777789999999999999999999999877666552
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
..|||+|+|+..|.+.|+.+|..+|.+.+++++..+ .|+
T Consensus 737 ----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gk 775 (881)
T KOG0128|consen 737 ----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGK 775 (881)
T ss_pred ----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccc
Confidence 279999999999999999999999999999987765 799
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
++|.|||.|.+..+|.+++.... ..+.-+.+.|....+
T Consensus 776 pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999999888 667777777777655
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.5e-12 Score=121.87 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=141.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccC-----------C-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQY-----------G-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK 194 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~-----------G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~ 194 (474)
....+++||++||+.++++.+..||..- | .|..+.|- ..+.||||+|.+.+.|..|+.....
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccch
Confidence 3456789999999999999999999753 2 25555443 3456999999999999999988777
Q ss_pred ccCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCe
Q 011975 195 KIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEI 274 (474)
Q Consensus 195 ~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i 274 (474)
.+.|+.+.+.................. .................+++||++||..+++++++++...||.+
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~---------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQ---------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred hhCCCCceecccccccCCccchhhhcc---------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 778887777655433222111100000 00000011112234456799999999999999999999999999
Q ss_pred eEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 275 EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 275 ~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
....++.+..+|.++||||.+|.+......|+..|| ..+.+++|.|..|....
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999999999999999999 88999999999997644
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=7.9e-12 Score=91.00 Aligned_cols=69 Identities=36% Similarity=0.558 Sum_probs=63.9
Q ss_pred EcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 135 VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 135 V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
|+|||..+++++|+.+|.+||.|..++|..++.+++++|||||+|.+.++|..|+..++ ..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999999999999999988789999999999999999999999998 5578888765
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.1e-12 Score=110.62 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=113.6
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~ 207 (474)
..+||||.||...++++-|.++|-+.|+|..|.|..++ .++.| ||||.|.++-++.-|++++++. +.++.+.|
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~---- 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR---- 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc----
Confidence 35799999999999999999999999999999877666 77777 9999999999999999999954 77777665
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccC----CCCCCCHHHHHHHHhccCCeeEeEeeecC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSN----VGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~i~~v~i~~d~ 283 (474)
+++.++ |...++++.+..+|+..+.|..+++.++.
T Consensus 82 -----------------------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~ 120 (267)
T KOG4454|consen 82 -----------------------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN 120 (267)
T ss_pred -----------------------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccc
Confidence 455566 77789999999999999999999999886
Q ss_pred CCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 284 ATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
+++.+.+.||.+....+.-.++....
T Consensus 121 -d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 121 -DGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred -cCCccCccchhhhhhhcCcHHhhhhc
Confidence 48889999998877666666665443
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=116.31 Aligned_cols=79 Identities=32% Similarity=0.573 Sum_probs=76.2
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|..||.|..|+|..++.+++++|||||+|.+.++|..|+..++ ..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5799999999999999999999999999999999998899999999999999999999999999 999999999999764
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.6e-11 Score=89.02 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=54.5
Q ss_pred HHHHHHHHh----ccCCeeEeE-eeecCCC--CCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 261 PQKLLAFFS----KYGEIEEGP-LGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 261 ~~~L~~~F~----~~G~i~~v~-i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
+++|+++|+ .||.|.+|. |+.++.+ +.++||+||+|.+.++|.+|+..|| ..|.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 8999999999999999999999999 9999999987
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=3.6e-11 Score=88.32 Aligned_cols=73 Identities=34% Similarity=0.569 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEE
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~ 205 (474)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .++|+|||+|.+.++|..|++.++.. +.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988744 78999999999999999999999966 8888888753
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=2.6e-11 Score=83.85 Aligned_cols=55 Identities=33% Similarity=0.606 Sum_probs=50.1
Q ss_pred HHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 264 L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
|+++|++||.|..|.+.+.. +++|||+|.+.++|.+|+..|| ..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997653 6999999999999999999999 8999999999986
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=112.31 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=129.5
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
....++..|..++||+..++.+|..||.-.-.+.-.+.+.....|+..|++.|.|.+.+.-+.|++.+.+.+.+|.|.|-
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievY 134 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVY 134 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeee
Confidence 34455667889999999999999999985543333344444457888899999999999999999999999999999998
Q ss_pred EcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccC----CeeEeEee
Q 011975 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG----EIEEGPLG 280 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G----~i~~v~i~ 280 (474)
.+............... ..........-.|.+++||+++|+.++.+||.+.. .++.|.++
T Consensus 135 ka~ge~f~~iagg~s~e----------------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNE----------------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred ccCchhheEecCCcccc----------------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 87644332111100000 00000011123678899999999999999997543 33456555
Q ss_pred ecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEe
Q 011975 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (474)
Q Consensus 281 ~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~ 322 (474)
+. .+|+..|-|||.|...++|..||.+....|.-|.|+|-.
T Consensus 199 ~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 199 TR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 54 479999999999999999999999877666666655433
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=1.5e-09 Score=107.89 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=72.1
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....+||||+.|+.++++.+|..+|+.||.|.+|.++.. +|||||++.+..+|.+||.+|+ ..+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3445789999999999999999999999999999998754 9999999999999999999999 89999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
|+...
T Consensus 491 Wa~g~ 495 (894)
T KOG0132|consen 491 WAVGK 495 (894)
T ss_pred eeccC
Confidence 99864
No 109
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-10 Score=110.64 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=72.5
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecccC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~~ 326 (474)
..+|||+|||.+++..+|.++|..||.|+...|..-...++..+||||+|.+.+++..||.+....|++++|.|.-.+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988877543355559999999999999999999888899999999988775
Q ss_pred CCCC
Q 011975 327 PKPG 330 (474)
Q Consensus 327 ~~~~ 330 (474)
....
T Consensus 368 ~~g~ 371 (419)
T KOG0116|consen 368 FRGN 371 (419)
T ss_pred cccc
Confidence 5443
No 110
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.2e-11 Score=107.27 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=67.6
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
+|||+|||..+++.+|+.+|++||+|++|.|+ |.|+||+.++...|..||+.|+ .+|+|..|.|+-++++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 79999999999999999999999999999998 5599999999999999999999 89999999999998873
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.7e-11 Score=109.34 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=81.4
Q ss_pred ccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
...++.+.|||.-|.+-+|.++|.-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-+|+ ..|+.++|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345677899999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.|+.+-.+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99987655
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.1e-10 Score=84.59 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=53.2
Q ss_pred HhHHHHHhc----cCCCeeEEE-EeecCCC--CCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 144 AETLIDAFK----QYGEIEDCK-AVCDKVS--GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 144 ~~~L~~~f~----~~G~v~~v~-i~~d~~~--g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
+++|+++|+ +||.|.+|. |+.++.+ ++++|||||+|.+.++|.+|++.|+ ..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999995 7777766 9999999999999999999999999 4578998875
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=1.8e-10 Score=106.71 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=79.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
..++|||++||.++++++|+++|.+||.|..+.|+.|..+.+++||+||.|.+.+++.+++...-+.|+++.+.|..|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999888999999999999986
Q ss_pred CCCCC
Q 011975 209 GPATT 213 (474)
Q Consensus 209 ~~~~~ 213 (474)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 65543
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.12 E-value=7.8e-11 Score=101.96 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=131.8
Q ss_pred CCCcceEEEcCCCCCCCHhH-H--HHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeE
Q 011975 127 DPVHRKIFVHGLGWDTKAET-L--IDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~-L--~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~ 202 (474)
.+....+|+.++-.++..+- | -..|+.+-.+...+++++. .+.-++++|+.|.....-.++-..-+ +++.-+.|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 35566788888877776665 3 5678877777777777776 67888999999998877777766555 334444443
Q ss_pred EEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeec
Q 011975 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (474)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d 282 (474)
+-........ ..........+||.+.|.-.++.+.|-..|.+|-.....++++|
T Consensus 172 ~a~gtswedP--------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd 225 (290)
T KOG0226|consen 172 LAAGTSWEDP--------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD 225 (290)
T ss_pred eccccccCCc--------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccc
Confidence 3332211111 01123334569999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
+.|++++||+||.|.+..++..|++.++ ++++.|.|+++...-+
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 9999999999999999999999999999 8899999988665443
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.12 E-value=3.6e-09 Score=96.50 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=135.9
Q ss_pred CCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~ 204 (474)
....+.+.|-+|.. .++-+.|..+|..||.|+.|++++.+ .|.|.|++.+..++++|+..|+.. +.|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 35677899999984 56788999999999999999999876 368999999999999999999954 799999998
Q ss_pred EcccCCCCCCCcCcc-----ccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCC-eeEeE
Q 011975 205 LASIGPATTPAVAST-----ATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGP 278 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~ 278 (474)
.+............. .-.....++..+..............++++|+.-|.|..+||+.|..+|..... -.+|+
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 876432221110000 000001111111111122223344567789999999999999999999986653 46777
Q ss_pred eeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC----eEEEEEecccCC
Q 011975 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG----HILNCQRAIDGP 327 (474)
Q Consensus 279 i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g----~~l~v~~a~~~~ 327 (474)
|+.-+.. ...-+.++|++.++|..||-.+| ..|.+ .+..++|+.+.+
T Consensus 439 vFp~kse--rSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 439 VFPLKSE--RSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eeccccc--ccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 7765422 23347899999999999999999 55554 455666666544
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=8.4e-11 Score=102.21 Aligned_cols=87 Identities=25% Similarity=0.391 Sum_probs=78.3
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~ 202 (474)
..+-++.|+|||-.||.+.++.+|...|-+||.|++.+|+.|+.|..||.|+||.|.++.+|+.||..+|+. |.=+.|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 455688999999999999999999999999999999999999999999999999999999999999999954 7777788
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
|++...+.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 87765443
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=4.4e-10 Score=94.72 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=74.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhcc-CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
....++|..+|..+.+.+|..+|.+| |.|..+++-|.+.||.|||||||+|.+.+.|.-|-+.|| ..|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34589999999999999999999999 778888888999999999999999999999999999999 7788999999987
Q ss_pred ccC
Q 011975 324 IDG 326 (474)
Q Consensus 324 ~~~ 326 (474)
-+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=5.3e-10 Score=77.24 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=48.1
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 147 LIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 147 L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
|.++|++||.|..|++..+. +++|||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999887654 5899999999999999999988 4589999999885
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.7e-10 Score=100.47 Aligned_cols=84 Identities=26% Similarity=0.431 Sum_probs=76.8
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v 203 (474)
+..+....|||.-|.+-+|.++|.-+|+.||.|.+|.|++|..||.+.-||||+|.+.+++++|.-.|... |..|.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34455679999999999999999999999999999999999999999999999999999999999988855 79999999
Q ss_pred EEccc
Q 011975 204 QLASI 208 (474)
Q Consensus 204 ~~~~~ 208 (474)
.++..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 98753
No 120
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.05 E-value=5.4e-10 Score=95.86 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=71.9
Q ss_pred ceEEccCCCCCCCHHHHHH----HHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 248 RKIFVSNVGSELEPQKLLA----FFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
.||||.||+..+..++|+. +|++||.|..|..++ +.+.+|-|||.|.+.+.|-.|+++|+ ..|.|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999988 999999999998864 67889999999999999999999999 999999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
|.....
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 987543
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.04 E-value=4.4e-10 Score=94.70 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccC-CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~-G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~ 206 (474)
...-+||..||.-+.+..|..+|.+| |.|..+++.+++.||.|||||||+|.+.+.|.-|.+.||.. +.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34579999999999999999999998 78889998899999999999999999999999999999977 57888888886
Q ss_pred ccC
Q 011975 207 SIG 209 (474)
Q Consensus 207 ~~~ 209 (474)
...
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=6.7e-10 Score=100.55 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=70.6
Q ss_pred cccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCCeEE
Q 011975 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHIL 318 (474)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g~~l 318 (474)
+.....-++|||++|-..+++.+|+++|-+||.|.+|+++.. +++|||+|.+.++|+.|..+.- ..|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 444555679999999999999999999999999999999865 7799999999999999987755 78899999
Q ss_pred EEEeccc
Q 011975 319 NCQRAID 325 (474)
Q Consensus 319 ~v~~a~~ 325 (474)
+|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999977
No 123
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.02 E-value=1.6e-08 Score=91.51 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=67.9
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccC--CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.++||+||-|.+|+++|.+.+...| .|.+++++.++..|++||||+|...+..+..+.++.|- ++|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 3999999999999999999988776 46788888899999999999999999999999999999 99999776665554
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=1.6e-09 Score=103.76 Aligned_cols=83 Identities=28% Similarity=0.492 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||.+|+..+...+|+.+|++||.|+-.+|+++..+.-.+.|+||++.+.++|.+||..|+ ..|+||.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 457789999999999999999999999999999999998887788999999999999999999999 5699999999998
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
...+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 6443
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.93 E-value=2.7e-09 Score=104.61 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=139.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
.+.+.|-+++.+++....++++||... .|..+.|..+...+...|-++|.|....++++|++.....+..|.+.+..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 456778889999999999999999754 4566667777655556899999999999999999998888888888887665
Q ss_pred cCCCCCCCcCccccc----cc---cccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeE-eEe
Q 011975 208 IGPATTPAVASTATH----QH---QHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPL 279 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i 279 (474)
............... .. .+..............+.....+.+|||..||..+++..+.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 333221111100000 00 0000001111111223345566789999999999999999999999888877 555
Q ss_pred eecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 280 ~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.+- .+++.++.|||.|...+++..|+..-+ +++..|.|+|.-...
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 444 478889999999999999999988877 777778888876543
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=6.2e-10 Score=112.39 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=130.4
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~ 202 (474)
.++...+++||++||+..+++.+|+..|..+|.|.+|.|-+-+ -+.-.-|+||.|.+...+-.|+-.+... |..-.+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3455678999999999999999999999999999999987654 3444558999999999999998887754 3222333
Q ss_pred EEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeec
Q 011975 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (474)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d 282 (474)
+.+... .....+.|+|++|..++....|...|..||.|..|.+-.
T Consensus 445 ~glG~~----------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h- 489 (975)
T KOG0112|consen 445 IGLGQP----------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH- 489 (975)
T ss_pred cccccc----------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-
Confidence 333211 222446899999999999999999999999999887632
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEecccCCC
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPK 328 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a~~~~~ 328 (474)
..-||+|.|.+...|..|+..+. ..|.+ +.|.|.|+.....
T Consensus 490 -----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 490 -----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred -----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 25599999999999999999988 66765 7799999876543
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=4.1e-09 Score=95.53 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=68.5
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC--ccCCeeeEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGNRMTAC 203 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~--~~~gr~~~v 203 (474)
++...++|||++|-..+++.+|+++|.+||.|.+|+++... ++|||+|.+.++|+.|....-. .|.|+.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45567899999999999999999999999999999988754 5999999999999999988663 479999999
Q ss_pred EEccc
Q 011975 204 QLASI 208 (474)
Q Consensus 204 ~~~~~ 208 (474)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99875
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.87 E-value=5e-09 Score=100.50 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=76.9
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....+.|+|.+|...+-..+|+.||++||.|+-.+|+.+..+--.++|+||++.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34567899999999999999999999999999999999987676779999999999999999999999 99999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
.+...
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 98753
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.72 E-value=5e-09 Score=90.96 Aligned_cols=86 Identities=31% Similarity=0.529 Sum_probs=75.6
Q ss_pred ccCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeee
Q 011975 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMT 201 (474)
Q Consensus 123 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~ 201 (474)
..+.+.+..+||++.|..+++++-|...|.+|-.....++++|+.||+++||+||.|.+..++..|++.++.. +..|.|
T Consensus 183 l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 183 LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 3444556679999999999999999999999999999999999999999999999999999999999999955 677777
Q ss_pred EEEEccc
Q 011975 202 ACQLASI 208 (474)
Q Consensus 202 ~v~~~~~ 208 (474)
.+..+..
T Consensus 263 klRkS~w 269 (290)
T KOG0226|consen 263 KLRKSEW 269 (290)
T ss_pred HhhhhhH
Confidence 7665543
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=5.5e-08 Score=86.62 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=73.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
...+|+|.|||+.++.++|+++|..||.+..+.|-.++ .|.+.|+|-|.|...++|.+|++.++ ..|+|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34689999999999999999999999999999888875 89999999999999999999999999 88999999988876
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=90.92 Aligned_cols=174 Identities=10% Similarity=0.023 Sum_probs=103.8
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
....|||..||..+++.++.++|...-.|++..++....+++-++.|||.|..++++.+|+..-+ +.+..|.|+|+...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 34579999999999999999999998888884344444488999999999999888888876655 55788899988765
Q ss_pred cCCCCC-CCcCccccccccccccccccccccc--cccccccccceEEccCCC-CCCCHHHHHHHHhcc-CCeeEeEeeec
Q 011975 208 IGPATT-PAVASTATHQHQHQHQHQHQHQHQQ--HHQQSEYTQRKIFVSNVG-SELEPQKLLAFFSKY-GEIEEGPLGID 282 (474)
Q Consensus 208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nLp-~~~t~~~L~~~F~~~-G~i~~v~i~~d 282 (474)
.+.... +...... ..+.....+..... ..........+-.+.+.+ +..+.-+.+.+.... -.-..+.+.+|
T Consensus 513 ~~~m~~ek~~~~~~----~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~d 588 (944)
T KOG4307|consen 513 DYAMMMEKNGEQGI----KLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRD 588 (944)
T ss_pred hHHHHHHHhHHHHH----HHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccc
Confidence 443210 0000000 00000000000000 001111112234445566 566665555444321 22234455555
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHH
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALE 307 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~ 307 (474)
+.+++++-+||.|.+...+..-+.
T Consensus 589 -N~~~~~~~~~v~~~n~p~~r~~~~ 612 (944)
T KOG4307|consen 589 -NRDRSRSRSPVRRRNSPRRREEHT 612 (944)
T ss_pred -cCCcccccCccccCCCccccchhh
Confidence 457778899999998877766553
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=9e-08 Score=85.27 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~ 205 (474)
+....+|+|.|||+.++.+||+++|..||.+..+-|-+++ .|++.|.|-|.|...++|.+|++.++.. |.|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445689999999999999999999999999999888887 8999999999999999999999999965 7999988887
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
......
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 754433
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.66 E-value=4.8e-08 Score=94.19 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
..+|||+|||++++..+|+++|..||.|+...|......++...||||+|.+.++++.||.+....|.++.+.|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 345999999999999999999999999999998776545555589999999999999999999788999999998763
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.66 E-value=2e-08 Score=92.27 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=124.2
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~---g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
..|.|.||.+.+|.+++..+|.-.|.|..++|+.+... ....-.|||.|.+..++..|..+.|..+-++.|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47999999999999999999999999999998864322 234458999999999999999998888888888887765
Q ss_pred cCCCCCCCcCcccccccccccc------------c---ccccccccc---------ccccccccceEEccCCCCCCCHHH
Q 011975 208 IGPATTPAVASTATHQHQHQHQ------------H---QHQHQHQQH---------HQQSEYTQRKIFVSNVGSELEPQK 263 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~---------~~~~~~~~~~l~V~nLp~~~t~~~ 263 (474)
...................... . ......-.. ........++|+|.+|+..|...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 4333221100000000000000 0 000000000 001111237899999999999999
Q ss_pred HHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccC
Q 011975 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFE 314 (474)
Q Consensus 264 L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~ 314 (474)
+.++|+.+|.|.+.++.. +...-+|-|.|....+...|+..++..+.
T Consensus 168 ~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 999999999999888743 34456788999999999999988874443
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=79.61 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=72.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee-cCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC---CeEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI-DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNC 320 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~-d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~---g~~l~v 320 (474)
..+||||.+||.++...+|..+|..|-..+.+.|-. ++.....+-+|||+|.+..+|..|+.+|| ..|+ +.+|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 457999999999999999999999997777665532 23333445799999999999999999999 6665 688999
Q ss_pred EecccCCCCCCCCC
Q 011975 321 QRAIDGPKPGKSRH 334 (474)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (474)
.+|++..+..+.+.
T Consensus 113 ElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKG 126 (284)
T ss_pred eehhcCcccccCCC
Confidence 99999887665443
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=9.9e-09 Score=95.13 Aligned_cols=152 Identities=17% Similarity=0.244 Sum_probs=117.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc--cCCeeeEEEEccc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASI 208 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~--~~gr~~~v~~~~~ 208 (474)
..|||+||.+.++..+|..+|...-.-.+-.++. -.||+||.+.+..-|.+|++.+++. +.|+.+.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3699999999999999999997541111111111 2379999999999999999999954 6888888776643
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEee-ecCCCCC
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG-IDKATGK 287 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-~d~~~g~ 287 (474)
+.. ..+++-|+|+|...-++.|..++..||.|..|..+ .+.+
T Consensus 76 kkq----------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--- 118 (584)
T KOG2193|consen 76 KKQ----------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--- 118 (584)
T ss_pred HHH----------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---
Confidence 221 22469999999999999999999999999988653 2322
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
.-..-|+|.+.+.+..||.+++ ..|....++|.|--+.
T Consensus 119 -tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 119 -TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 2334578999999999999999 8899999999887543
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=5.1e-08 Score=94.21 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=102.6
Q ss_pred ccCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeee
Q 011975 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (474)
Q Consensus 123 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~ 201 (474)
....+-..++|+|-|||.++++++|..+|+.||+|..|+. |-..+|..||+|-++.+|++|++.|+ ..|.++.|
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3344566789999999999999999999999999999764 33467899999999999999999999 55888777
Q ss_pred EEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
.............. . .......................+|+- |++..+...++..|+-+|.+.. +.
T Consensus 143 k~~~~~~~~~~~~~---~-------~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-- 208 (549)
T KOG4660|consen 143 KRPGGARRAMGLQS---G-------TSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-- 208 (549)
T ss_pred cCCCcccccchhcc---c-------chhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc--
Confidence 61111110000000 0 000000000000111111112344433 8888888778888888887765 32
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHH
Q 011975 282 DKATGKPKGFCLFVYKTVDAAKKALE 307 (474)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~ 307 (474)
++.-+-.-|+.|.+..++..++.
T Consensus 209 ---~~~~~hq~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 209 ---TPLLNHQRFVEFADNRSYAFSEP 231 (549)
T ss_pred ---ccchhhhhhhhhccccchhhccc
Confidence 22223356788888877744443
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=1.6e-07 Score=84.04 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=75.7
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...+.+||+|+.+.+|.++|...|+.||.|..|.|+.|+..+++|||+||+|.+.+.+..|+. |+ ..|.++.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345699999999999999999999999999999999999999999999999999999999999 78 9999999999998
Q ss_pred ccC
Q 011975 324 IDG 326 (474)
Q Consensus 324 ~~~ 326 (474)
+-+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.57 E-value=1.7e-07 Score=85.17 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=72.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCee--------EeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH 316 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~ 316 (474)
..+.|||.|||..+|.+++.++|++||.|. .|.|.++. .|+.||=|+|.|-..+++..||..|+ ..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345799999999999999999999999985 47888885 59999999999999999999999999 899999
Q ss_pred EEEEEecccC
Q 011975 317 ILNCQRAIDG 326 (474)
Q Consensus 317 ~l~v~~a~~~ 326 (474)
.|+|..|.-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999999754
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1.4e-07 Score=84.41 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=76.8
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v 203 (474)
.....+.+.|||+|+.+.+|.++|...|+-||.|..|.|..|+.++.+|||+||+|.+.+.+..||......|.++.+.|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 34556678999999999999999999999999999999999999999999999999999999999994447799999999
Q ss_pred EEcccC
Q 011975 204 QLASIG 209 (474)
Q Consensus 204 ~~~~~~ 209 (474)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887543
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=5.8e-07 Score=68.32 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c----CCeeeEE
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I----GNRMTAC 203 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~----~gr~~~v 203 (474)
+||.|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|.+..+..++. + ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998865 466777888999989999999999999999999999998843 3 3455566
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=9.7e-08 Score=92.30 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=64.8
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~ 319 (474)
......+|+|-|||..+++++|+.+|+.||.|..|+.- -..+|++||+|.+..+|.+|++.|+ ..|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34456799999999999999999999999999997754 3459999999999999999999999 899999888
No 143
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.47 E-value=1.6e-06 Score=78.74 Aligned_cols=76 Identities=21% Similarity=0.404 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
-....+||+||-+.+|++||.+.+...| .|.+++++-++.+|.+||||+|...+..++++.++.|- +.|+|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3445799999999999999999987766 46788888899999999999999999999999999887 4577665444
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.44 E-value=1.2e-06 Score=66.49 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=66.4
Q ss_pred ceEEccCCCCCCCHHHHHHHHhcc--CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC----CeEEEE
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE----GHILNC 320 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~----g~~l~v 320 (474)
+||.|+|||-..|.++|.+++... |...-+-++.|..+....|||||.|.+++.|.+-...++ ..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 599999999999999999988754 667788888898889999999999999999999999888 4443 466788
Q ss_pred Eeccc
Q 011975 321 QRAID 325 (474)
Q Consensus 321 ~~a~~ 325 (474)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=3.7e-07 Score=90.32 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=73.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~---g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~ 202 (474)
++..++|||+||++.++++.|...|..||+|.+|+|+.-+.. .+.+-|+||.|-+..+|++|++.|++. +....+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 577889999999999999999999999999999999876542 456679999999999999999999965 6888899
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
+.|...-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 88885433
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.2e-07 Score=80.58 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=68.2
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.+||||.||...++++.|.++|-+.|+|.+|.|..++ .++.| ||||.|.+.-+..-|+..+| ..+.++.|.|.+-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4699999999999999999999999999999998875 56667 99999999999999999999 88888888776654
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.40 E-value=7.5e-07 Score=81.92 Aligned_cols=90 Identities=28% Similarity=0.307 Sum_probs=80.6
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCee--------EeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~ 314 (474)
.....+|||-+||..+++++|.++|.+++.|. .|.|.+|++|+++||-|.|.|.+...|+.||..++ +.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999884 57888999999999999999999999999999999 9999
Q ss_pred CeEEEEEecccCCCCCCCC
Q 011975 315 GHILNCQRAIDGPKPGKSR 333 (474)
Q Consensus 315 g~~l~v~~a~~~~~~~~~~ 333 (474)
+.+|+|.+|..++.....+
T Consensus 143 gn~ikvs~a~~r~~ve~~r 161 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVESVR 161 (351)
T ss_pred CCCchhhhhhhccCccccc
Confidence 9999999998877544433
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=5.2e-08 Score=98.43 Aligned_cols=164 Identities=20% Similarity=0.158 Sum_probs=127.2
Q ss_pred cceEEEcCCCCCCCHh-HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAE-TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~-~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
.+.+.+.|+.+..... .++..|..++.|+.|++......-....+.++.+....+++.|.....+.+.++.+.|..+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3457777787766555 678899999999999876633222233389999999999999999888888888888888765
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
.......... +.....-.++||+||+..+.+.+|...|..++.|..++|......++.
T Consensus 651 ~~~~~~~kvs----------------------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~ 708 (881)
T KOG0128|consen 651 EEKEENFKVS----------------------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRF 708 (881)
T ss_pred hhhhhccCcC----------------------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccc
Confidence 5433222111 111123358999999999999999999999999988888766778999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCCCccCC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPHKNFEG 315 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~~~~~g 315 (474)
+|+|||.|...+++.+||......+.|
T Consensus 709 rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 709 RGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred ccceeeEeecCCchhhhhhhhhhhhhh
Confidence 999999999999999999988855555
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=86.98 Aligned_cols=84 Identities=13% Similarity=0.225 Sum_probs=75.1
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecC---CCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~---~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~ 319 (474)
.+.++.|||+||++.++++.|...|..||+|..|+|+..+ +..+.+-|+||-|-+..+|.+|+..|+ ..+..+.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998765 245668899999999999999999999 899999999
Q ss_pred EEecccCC
Q 011975 320 CQRAIDGP 327 (474)
Q Consensus 320 v~~a~~~~ 327 (474)
+.|+..-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99996543
No 150
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=7.4e-07 Score=77.64 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=64.2
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..++ ..|.+-.+.|.|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 379999999999999999999999999999873 6899999999999999999999 889988888888864
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=5.5e-06 Score=59.66 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=47.2
Q ss_pred ceEEccCCCCCCCHH----HHHHHHhccC-CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 248 RKIFVSNVGSELEPQ----KLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~----~L~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
+.|+|.|||...+.. .|++++..+| .|..|. .+.|+|.|.+.+.|.+|.+.|+ ..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999988765 4567777885 565552 5789999999999999999999 88999999999
Q ss_pred ecc
Q 011975 322 RAI 324 (474)
Q Consensus 322 ~a~ 324 (474)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 984
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=5.5e-06 Score=64.66 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=44.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C-----ccCCeEEEEE
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K-----NFEGHILNCQ 321 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~-----~~~g~~l~v~ 321 (474)
+.|+|.+++..++.++|+++|+.||.|.+|.+.+. --.|||.|.+.++|..|+.++. . .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47999999999999999999999999999998654 4479999999999999998776 3 4555555544
Q ss_pred e
Q 011975 322 R 322 (474)
Q Consensus 322 ~ 322 (474)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.02 E-value=4.5e-06 Score=76.88 Aligned_cols=83 Identities=24% Similarity=0.244 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCC
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN 198 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~g 198 (474)
...-+|||-+||..+++++|.++|.+++.|. .|+|.+|+.|++.||-|.|.|.+...|+.||.-++ ..+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3445899999999999999999999999874 57889999999999999999999999999999988 56888
Q ss_pred eeeEEEEcccCC
Q 011975 199 RMTACQLASIGP 210 (474)
Q Consensus 199 r~~~v~~~~~~~ 210 (474)
..|.|.++...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 888888886554
No 154
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.00 E-value=6.6e-06 Score=72.03 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=58.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC--------CCcce----EEEEEeccHHHHHHHHHccCCc-c
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS--------GKSKG----YGFILFKTRSGARKALKEPQKK-I 196 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~--------g~skG----~afV~F~~~~~A~~Ai~~~~~~-~ 196 (474)
.-.||+++||+.+...-|+++|+.||.|-.|.|-....+ |.++. -++|+|.+...|.++...||.. |
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999987665544 33333 2789999999999999999954 6
Q ss_pred CCee
Q 011975 197 GNRM 200 (474)
Q Consensus 197 ~gr~ 200 (474)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 6664
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=2.6e-05 Score=56.26 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=46.5
Q ss_pred ceEEEcCCCCCCCHhHHH----HHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEEE
Q 011975 131 RKIFVHGLGWDTKAETLI----DAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~----~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~ 204 (474)
..|||.|||.+.+...|+ .++.-|| .|..|. .+.|+|.|.+.+.|.+|.+.|.+. +.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999998876555 5556675 566651 256999999999999999999955 899999999
Q ss_pred Eccc
Q 011975 205 LASI 208 (474)
Q Consensus 205 ~~~~ 208 (474)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 156
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=0.00036 Score=65.79 Aligned_cols=65 Identities=28% Similarity=0.338 Sum_probs=56.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeec---CCC--CCc--------ccEEEEEEcCHHHHHHHHHcCC
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID---KAT--GKP--------KGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d---~~~--g~~--------kg~afV~F~~~~~A~~Al~~~~ 310 (474)
..++|.+.|||.+-.-+.|.++|..||.|..|+|+.. +.+ +.+ +-||||+|.+.+.|.+|.+.++
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5679999999999999999999999999999999876 322 222 5689999999999999999997
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.79 E-value=1.6e-05 Score=73.90 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=71.7
Q ss_pred ceEE-EcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccC
Q 011975 131 RKIF-VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~-V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~ 209 (474)
.++| |++|++.+++++|+.+|..+|.|..+++..+..++.++|||||.|.+...+..++..-...+.++.+.+......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999998336688888888877654
Q ss_pred CC
Q 011975 210 PA 211 (474)
Q Consensus 210 ~~ 211 (474)
+.
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 43
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=6.4e-05 Score=58.70 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=38.1
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~ 193 (474)
+.|+|.+++..++.++|+++|++||.|..|.+.... -.|||.|.+.+.|++|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 468999999999999999999999999988876543 269999999999999998765
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00018 Score=63.31 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=75.0
Q ss_pred HHHHHHHccCCc-cCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHH
Q 011975 184 GARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQ 262 (474)
Q Consensus 184 ~A~~Ai~~~~~~-~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 262 (474)
-|..|-..|+.. ..++.++|.++.. ..|+|.||...++.+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~snd 46 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASND 46 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhhH
Confidence 456666677755 6899999999853 279999999999999
Q ss_pred HHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 263 KLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 263 ~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
.|.+.|+.||.|....++.| ..+++.+-++|.|...-.|.+|+..++
T Consensus 47 ll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 47 LLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred HHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 99999999999988877777 468889999999999999999999886
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.47 E-value=0.00027 Score=47.52 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=42.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHH
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (474)
+.|.|.+.+....+ .|+.+|..||.|..+.+.. ..-+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46888888876664 4555888999999998852 2668999999999999986
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.0003 Score=64.10 Aligned_cols=81 Identities=15% Similarity=0.352 Sum_probs=62.6
Q ss_pred cccceEEccCCCCCCCHHH----H--HHHHhccCCeeEeEeeecCCCCC-cccE--EEEEEcCHHHHHHHHHcCC-CccC
Q 011975 245 YTQRKIFVSNVGSELEPQK----L--LAFFSKYGEIEEGPLGIDKATGK-PKGF--CLFVYKTVDAAKKALEEPH-KNFE 314 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~----L--~~~F~~~G~i~~v~i~~d~~~g~-~kg~--afV~F~~~~~A~~Al~~~~-~~~~ 314 (474)
...+-+||-+|+..+-.++ | .++|.+||.|..|.|-+...... ..+. .||+|.+.++|.+||...+ ..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999988776555 2 47999999999998865431111 1222 4999999999999999999 8999
Q ss_pred CeEEEEEeccc
Q 011975 315 GHILNCQRAID 325 (474)
Q Consensus 315 g~~l~v~~a~~ 325 (474)
||.|++.|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988764
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00041 Score=46.63 Aligned_cols=52 Identities=33% Similarity=0.469 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHH
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai 189 (474)
+.|-|.+.+.+..+. |..+|..||.|..+.+-. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578899999877654 555888999999987652 2347999999999999986
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00046 Score=67.30 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=61.7
Q ss_pred cceEEccCCCCCC------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc-CCeEE
Q 011975 247 QRKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHIL 318 (474)
Q Consensus 247 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~-~g~~l 318 (474)
..+|+|-|+|--- -..-|..+|+++|+|+.+.++.+..+ .++||.|++|.+..+|..|++.|| +.| ..+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4599999998532 23456689999999999999988654 489999999999999999999999 555 45777
Q ss_pred EEEecc
Q 011975 319 NCQRAI 324 (474)
Q Consensus 319 ~v~~a~ 324 (474)
.|..-.
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776544
No 164
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00041 Score=68.08 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c---CCee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNRM 200 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~---~gr~ 200 (474)
....+..|||.||-.-+|.-.|+.++. .+|.|++++| |+ -|..|||.|.+.++|...+.+|++. + +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445567899999999999999999998 5777877743 22 3446999999999999999999954 2 6677
Q ss_pred eEEEEcc
Q 011975 201 TACQLAS 207 (474)
Q Consensus 201 ~~v~~~~ 207 (474)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8777765
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.26 E-value=0.0014 Score=50.30 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=52.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeE-eeecC------CCCCcccEEEEEEcCHHHHHHHHHcCCCccCC-eEEE
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGP-LGIDK------ATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILN 319 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-i~~d~------~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g-~~l~ 319 (474)
+-|.|-+.|.. ....|.+.|++||.|.+.. +.++. ..........|+|.+..+|.+||......|.| ..+-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEE
Confidence 46889999888 5567888899999998775 21110 01123668899999999999999998888887 4566
Q ss_pred EEeccc
Q 011975 320 CQRAID 325 (474)
Q Consensus 320 v~~a~~ 325 (474)
|.++.+
T Consensus 86 V~~~~~ 91 (100)
T PF05172_consen 86 VKPCDP 91 (100)
T ss_dssp EEE-HH
T ss_pred EEEcHH
Confidence 877743
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.16 E-value=0.00043 Score=65.34 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=58.1
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeec---CCC--CC--------cceEEEEEeccHHHHHHHHHcc
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD---KVS--GK--------SKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d---~~~--g~--------skG~afV~F~~~~~A~~Ai~~~ 192 (474)
.+..+++|.+-|||.+-.-+.|.++|..||.|..|+|+.- +.+ +. .+=+|||+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999999999999999999999998765 222 22 2447999999999999999998
Q ss_pred CC
Q 011975 193 QK 194 (474)
Q Consensus 193 ~~ 194 (474)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 73
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0021 Score=62.87 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCC--CHh----HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c-CCeeeE
Q 011975 131 RKIFVHGLGWDT--KAE----TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-GNRMTA 202 (474)
Q Consensus 131 ~~l~V~nLp~~~--t~~----~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~-~gr~~~ 202 (474)
..|+|-|+|--- .-+ -|..+|+++|+|..+.+..+. .|.++||.|++|.+..+|+.|++.+++. | .++.+.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 589999999432 223 455789999999999888887 4559999999999999999999999954 3 444555
Q ss_pred EEE
Q 011975 203 CQL 205 (474)
Q Consensus 203 v~~ 205 (474)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 544
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.08 E-value=0.00078 Score=62.78 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC---CCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA---TGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~---~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
.|.|.||.+++|.++++.||.-.|.|..++|+.... -....-.|||.|.+...+..|-...|..|-++.|.|.....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 899999999999999999999999999999876432 23346689999999999999998888888888888877655
Q ss_pred CCC
Q 011975 326 GPK 328 (474)
Q Consensus 326 ~~~ 328 (474)
...
T Consensus 89 ~~~ 91 (479)
T KOG4676|consen 89 EVI 91 (479)
T ss_pred CCC
Confidence 443
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.04 E-value=0.0016 Score=58.35 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=60.3
Q ss_pred ccceEEccCCC--CCC---CHHHHHHHHhccCCeeEeEeeecCCCCCcc-cEEEEEEcCHHHHHHHHHcCC-CccCCeEE
Q 011975 246 TQRKIFVSNVG--SEL---EPQKLLAFFSKYGEIEEGPLGIDKATGKPK-GFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (474)
Q Consensus 246 ~~~~l~V~nLp--~~~---t~~~L~~~F~~~G~i~~v~i~~d~~~g~~k-g~afV~F~~~~~A~~Al~~~~-~~~~g~~l 318 (474)
+++.|.++|+- -.+ -++++.+-+++||.|..|.|+..+..-... --.||+|...++|.+|+-.|| ++|.||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 34457777762 233 356888999999999999988775332222 237999999999999999999 99999998
Q ss_pred EEEecc
Q 011975 319 NCQRAI 324 (474)
Q Consensus 319 ~v~~a~ 324 (474)
...|-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 876643
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0018 Score=62.89 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=59.6
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~ 191 (474)
...+||||++||.-+|.++|..+|. -||-|..+-|=+|+.-+-.+|-|=|+|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5578999999999999999999998 699999999999977788999999999999999999986
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.00039 Score=61.19 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=58.3
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCC--------CCccc----EEEEEEcCHHHHHHHHHcCC-CccCC
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT--------GKPKG----FCLFVYKTVDAAKKALEEPH-KNFEG 315 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~--------g~~kg----~afV~F~~~~~A~~Al~~~~-~~~~g 315 (474)
.|||.+||+.+....||++|+.||.|-+|.+-....+ +..+. -++|+|.+...|.++...|| ..|.|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 8999999999999999999999999999988765433 22232 27899999999999999999 77877
Q ss_pred eE
Q 011975 316 HI 317 (474)
Q Consensus 316 ~~ 317 (474)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 54
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.01 E-value=0.002 Score=58.91 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=57.0
Q ss_pred eEEEcCCCCCCCHhH----H--HHHhccCCCeeEEEEeecCCC-CCcceEE--EEEeccHHHHHHHHHccCCc-cCCeee
Q 011975 132 KIFVHGLGWDTKAET----L--IDAFKQYGEIEDCKAVCDKVS-GKSKGYG--FILFKTRSGARKALKEPQKK-IGNRMT 201 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~----L--~~~f~~~G~v~~v~i~~d~~~-g~skG~a--fV~F~~~~~A~~Ai~~~~~~-~~gr~~ 201 (474)
-|||-+||+.+..++ | .++|.+||.|..|.|-+.... ....+.+ ||+|.+.++|.+||...++. +.||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999998887666 2 278999999988865443211 1122223 99999999999999999965 699999
Q ss_pred EEEEcc
Q 011975 202 ACQLAS 207 (474)
Q Consensus 202 ~v~~~~ 207 (474)
+..+..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 887764
No 173
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.89 E-value=0.0052 Score=64.26 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=24.4
Q ss_pred CcceEEEEEeccHHHHHHHHHccCCccCCeee
Q 011975 170 KSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (474)
Q Consensus 170 ~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~ 201 (474)
.-+||-||+=.....+..||+-+.....++.+
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~ 239 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYANRIL 239 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheeccEE
Confidence 36799999999999999999876644433333
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.79 E-value=0.0065 Score=48.73 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=59.5
Q ss_pred cccccceEEccCCCCCC----CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEE
Q 011975 243 SEYTQRKIFVSNVGSEL----EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHIL 318 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l 318 (474)
..++-.+|.|+=|..++ +-..|...++.||+|.+|.+.- +--|.|.|.+..+|.+|+.++....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 34455688888666554 3345667778999999998742 456999999999999999999988889999
Q ss_pred EEEecc
Q 011975 319 NCQRAI 324 (474)
Q Consensus 319 ~v~~a~ 324 (474)
.|.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 998864
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.78 E-value=0.0073 Score=46.40 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=50.5
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecC-------CCCCcceEEEEEeccHHHHHHHHHccCCccCCeee-
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-------VSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT- 201 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~-------~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~- 201 (474)
.+-|.|-+.|.. ....|.++|++||.|.+..-+... ..-.....-.|+|.++.+|.+||......|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 457999999988 557788899999999877411110 00122347899999999999999998888877644
Q ss_pred EEEEc
Q 011975 202 ACQLA 206 (474)
Q Consensus 202 ~v~~~ 206 (474)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 35554
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.65 E-value=0.0065 Score=44.12 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK 194 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~ 194 (474)
.||---+|..+...||.++|++||.| .|..+.|. -|||.+.+.+.|..++..+..
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 45555599999999999999999998 56666664 599999999999999988763
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.65 E-value=0.0095 Score=48.63 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=53.4
Q ss_pred cccccceEEccCCC-----CCCCH----HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCcc
Q 011975 243 SEYTQRKIFVSNVG-----SELEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNF 313 (474)
Q Consensus 243 ~~~~~~~l~V~nLp-----~~~t~----~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~ 313 (474)
..++..||.|.-+. ..... .+|.+.|..||.|.-||++-+ .-+|+|.+-++|.+|+......+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEE
Confidence 34455577777555 12223 367788999999998888644 47999999999999999988999
Q ss_pred CCeEEEEEecccCCC
Q 011975 314 EGHILNCQRAIDGPK 328 (474)
Q Consensus 314 ~g~~l~v~~a~~~~~ 328 (474)
.|+.|+|++..+...
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999999887543
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.62 E-value=0.0022 Score=63.18 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=62.9
Q ss_pred cccccccceEEccCCCCCCCHHHHHHHHh-ccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C-c--cCC
Q 011975 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K-N--FEG 315 (474)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~-~--~~g 315 (474)
+......+.|+|.||-.-+|.-+|+.++. ..|.|+.+ + .|+ -|..|||.|.+.++|...+.+|| . + -+.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 44566788999999999999999999999 55666666 2 232 27789999999999999999998 2 2 356
Q ss_pred eEEEEEeccc
Q 011975 316 HILNCQRAID 325 (474)
Q Consensus 316 ~~l~v~~a~~ 325 (474)
+.|.+.|+..
T Consensus 512 K~L~adf~~~ 521 (718)
T KOG2416|consen 512 KHLIADFVRA 521 (718)
T ss_pred ceeEeeecch
Confidence 8898888764
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.54 E-value=0.0011 Score=58.55 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=51.6
Q ss_pred HHHHHHHh-ccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 262 QKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 262 ~~L~~~F~-~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
++|...|+ +||.|+.+.|..+. .-..+|-+||.|...++|.+|+..|| ..|.|++|.+.++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555555 99999998776543 33558899999999999999999999 999999999988753
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.33 E-value=0.013 Score=42.65 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.8
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
...++|. +|..|...+|.++|++||.|. |.++-|. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3466777 999999999999999999984 5555542 49999999999999988876
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.0035 Score=55.45 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=63.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-----CccCCeeeEEEE
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-----KKIGNRMTACQL 205 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-----~~~~gr~~~v~~ 205 (474)
..|||.||+.-+..+.|...|+.||+|....++.|. .++..+-++|.|...-.|.+|+..+. ..+.++...|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999988777776 78889999999999999999999875 234566555544
Q ss_pred c
Q 011975 206 A 206 (474)
Q Consensus 206 ~ 206 (474)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.29 E-value=0.026 Score=38.92 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=44.4
Q ss_pred ceEEccCCCCCCCHHHHHHHHhcc---CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKY---GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
..|+|+++ .+++.++|+.+|..| ....+|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 48999999 458888999999998 234578887764 3789999999999999875
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.26 E-value=0.022 Score=39.24 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccC----CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQY----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~----G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
..|+|++|. +++.++|+.+|..| + ...|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999995 58889999999998 4 4477778776 4999999999999999864
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.24 E-value=0.017 Score=47.20 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCcceEEEcCCC-----CCCCH----hHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCC
Q 011975 128 PVHRKIFVHGLG-----WDTKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN 198 (474)
Q Consensus 128 ~~~~~l~V~nLp-----~~~t~----~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~g 198 (474)
+..-||.|.=+. ...-. .+|.+.|..||.|.-||++-+. -+|+|.+-.+|-+|+.....+++|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECC
Confidence 334566666554 11222 2677889999999888877654 899999999999999999999999
Q ss_pred eeeEEEEccc
Q 011975 199 RMTACQLASI 208 (474)
Q Consensus 199 r~~~v~~~~~ 208 (474)
+.|.|.+.+.
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999998764
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.19 E-value=0.025 Score=45.48 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=60.0
Q ss_pred cCCCCCcceEEEcCCCCCCC-Hh---HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCe
Q 011975 124 ADEDPVHRKIFVHGLGWDTK-AE---TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t-~~---~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr 199 (474)
...++.-.||.|+=|..++. .+ .|...++.||+|.+|.+.-. --|.|.|.+..+|-+|+.+++....|+
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 34466777899987766553 33 44556788999999965322 259999999999999999999999999
Q ss_pred eeEEEEcc
Q 011975 200 MTACQLAS 207 (474)
Q Consensus 200 ~~~v~~~~ 207 (474)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 99998864
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.98 E-value=0.0028 Score=56.15 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=49.8
Q ss_pred hHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 145 ETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 145 ~~L~~~f~-~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
++|...|. +||+|++++|..+. .-.-+|-+||.|...++|++|+..|+ .++.|+.|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 89999999765544 44567889999999999999999999 56899999988874
No 187
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.77 E-value=0.0094 Score=56.36 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=59.0
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCCeEEEEEeccc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAID 325 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g~~l~v~~a~~ 325 (474)
++|||+||.+.++..+|..+|...-.-..-.++. -.||+||.+.+...|.+|++.++ ..+.|+++.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3799999999999999999998652111111222 17899999999999999999999 688999999988776
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 44
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.44 E-value=0.037 Score=49.97 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=50.9
Q ss_pred HhHHHHHhccCCCeeEEEEeecCCCCCcc-eEEEEEeccHHHHHHHHHccCCc-cCCeeeEEEEccc
Q 011975 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSK-GYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (474)
Q Consensus 144 ~~~L~~~f~~~G~v~~v~i~~d~~~g~sk-G~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v~~~~~ 208 (474)
++++++-+.+||.|..|.|..++..-... --.||+|...++|.+|+-.|++. +.||.+...+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45778889999999999888776432221 23799999999999999999965 7888888777643
No 189
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.36 E-value=0.003 Score=60.46 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=3.4
Q ss_pred ceEEccC
Q 011975 248 RKIFVSN 254 (474)
Q Consensus 248 ~~l~V~n 254 (474)
.|=||.+
T Consensus 192 STDFVCG 198 (458)
T PF10446_consen 192 STDFVCG 198 (458)
T ss_pred cccccCC
Confidence 3555543
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.33 E-value=0.045 Score=53.85 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhccchhhhhcccc-CCCCCcceEEEcCCCCCCCHhHHHHHhcc--CCCeeEEEEeecCCCCCcceEEE
Q 011975 100 DQLVNLLREAAENHRDVASRVRQVA-DEDPVHRKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGF 176 (474)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~i~~d~~~g~skG~af 176 (474)
..+.++|.+.......+....+-.. ......|.|.|+-||..+-.++|+.||.- |-.+.+|.+-.+. -=|
T Consensus 144 ttDvdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWy 216 (684)
T KOG2591|consen 144 TTDVDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWY 216 (684)
T ss_pred ccchHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceE
Confidence 3445667777666665554443222 23344567899999999999999999974 7778888766554 269
Q ss_pred EEeccHHHHHHHHHccC---CccCCeeeEEEE
Q 011975 177 ILFKTRSGARKALKEPQ---KKIGNRMTACQL 205 (474)
Q Consensus 177 V~F~~~~~A~~Ai~~~~---~~~~gr~~~v~~ 205 (474)
|+|.+..+|+.|.+.|. +.|.|+.|....
T Consensus 217 ITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 217 ITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred EEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 99999999999999887 446666654443
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.32 E-value=0.024 Score=54.59 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=59.3
Q ss_pred ceEEccCCCCCC-CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~~ 326 (474)
+.|-+.-.|+.. |..+|...|.+||.|..|.|-.. --.|.|+|.+..+|-.|.......|++|.|+|.|..+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 455555556654 67899999999999999987433 33589999999999888777668999999999999874
Q ss_pred C
Q 011975 327 P 327 (474)
Q Consensus 327 ~ 327 (474)
+
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 192
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.23 E-value=0.0064 Score=63.00 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=65.0
Q ss_pred ccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.....+++||++||+..+++.+|+..|..||.|.+|.|-+.+ -+.-.-|+||.|.+...+-.|...+. ..|..-.+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 345567899999999999999999999999999999986553 34556789999999999999998887 5554444555
Q ss_pred Eec
Q 011975 321 QRA 323 (474)
Q Consensus 321 ~~a 323 (474)
.+.
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 444
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.18 E-value=0.026 Score=48.73 Aligned_cols=79 Identities=9% Similarity=-0.044 Sum_probs=48.5
Q ss_pred cceEEccCCCCCCCHHHHHHHHhc-cCCe---eEeEeeecCCC--CCcccEEEEEEcCHHHHHHHHHcCC-CccCC----
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSK-YGEI---EEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KNFEG---- 315 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~v~i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g---- 315 (474)
..+|.||+||+++|++++++.+.+ ++.. ..+.-...... -.....|||.|.+.+++..-+..++ +.|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 459999999999999999997776 5554 33331122111 1224569999999999999888887 44422
Q ss_pred -eEEEEEeccc
Q 011975 316 -HILNCQRAID 325 (474)
Q Consensus 316 -~~l~v~~a~~ 325 (474)
.+..|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3456666643
No 194
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.069 Score=50.34 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=50.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCe
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEI-EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr 199 (474)
-...|-|-++|.....+||...|+.|+.- ..|+++-|. .||..|.+...|..||..-+.++.-|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEee
Confidence 45689999999999999999999998752 355555554 69999999999999998755544333
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.52 E-value=0.027 Score=54.33 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCCC-CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDT-KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~-t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
..+++.|-+.-+|+.. |..+|..+|.+||.|..|.|-... -.|.|+|.+..+|-.|.....-.|.+|.|.|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEE
Confidence 3456777777788776 678999999999999999765542 249999999999999988888889999999999
Q ss_pred cccCCCCC
Q 011975 206 ASIGPATT 213 (474)
Q Consensus 206 ~~~~~~~~ 213 (474)
....+...
T Consensus 443 hnps~~tn 450 (526)
T KOG2135|consen 443 HNPSPVTN 450 (526)
T ss_pred ecCCcccC
Confidence 88765443
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.11 E-value=0.063 Score=52.83 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=58.0
Q ss_pred cceEEccCCCCCCCHHHHHHHHhc--cCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEEE
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQ 321 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v~ 321 (474)
.+.|+|+-||.++-.++|+.||.. +-.+++|.+-... -=||+|.+..||..|.+.|. ++|.|+.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 357889999999999999999974 7788888875542 25999999999999999987 78999888765
Q ss_pred ec
Q 011975 322 RA 323 (474)
Q Consensus 322 ~a 323 (474)
+.
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
Confidence 54
No 197
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=93.99 E-value=0.19 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=14.2
Q ss_pred ccEEEEEEcCHHHHHHHHHcCC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~ 310 (474)
+||.||+=.-..+...||+.+.
T Consensus 210 kGyIYIEA~KqshV~~Ai~gv~ 231 (1024)
T KOG1999|consen 210 KGYIYIEADKQSHVKEAIEGVR 231 (1024)
T ss_pred ceeEEEEechhHHHHHHHhhhh
Confidence 6677777666666666666544
No 198
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.72 Score=44.83 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.0
Q ss_pred EEEEEeccHHHHH
Q 011975 174 YGFILFKTRSGAR 186 (474)
Q Consensus 174 ~afV~F~~~~~A~ 186 (474)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 4556666655443
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.83 E-value=0.039 Score=55.61 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=61.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
.+...++||+|+.+.+..+-++.++..+|.|..+..+. |+|+.|..+.-+..|+..++ ..++|..|.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34456999999999999999999999999998886542 99999999999999999999 889898887765
Q ss_pred c
Q 011975 323 A 323 (474)
Q Consensus 323 a 323 (474)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.74 E-value=0.53 Score=36.97 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=49.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~ 314 (474)
...+.+...|+.++-++|..+.+.+- .|..++|++|. ...+-.+.++|.+.++|..-...+| +.|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34556666677777788887777664 46788998873 2346679999999999999999998 6554
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.67 E-value=0.09 Score=45.40 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=42.5
Q ss_pred cceEEEcCCCCCCCHhHHHHHhcc-CCCe---eEEEEeec-CCCC-CcceEEEEEeccHHHHHHHHHccCCc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQ-YGEI---EDCKAVCD-KVSG-KSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~-~G~v---~~v~i~~d-~~~g-~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
..+|.||+||+.+|++++.+.+.. ++.. ..+.-... .... ..-.-|||.|.+.+++...+..+++.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 458999999999999999997776 5554 23321111 1111 12235999999999999999988853
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.58 E-value=0.026 Score=52.33 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=58.9
Q ss_pred ceEEccCCCCCCCHHHHH---HHHhccCCeeEeEeeecCCCC-Cccc--EEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 248 RKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKATG-KPKG--FCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~d~~~g-~~kg--~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
+.+||-+|+.....+.+. +.|.+||.|..|.+.+++..- ...+ -++|+|...++|..||...+ ..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888888776554443 689999999999998876211 1111 28999999999999999999 8888888777
Q ss_pred Eeccc
Q 011975 321 QRAID 325 (474)
Q Consensus 321 ~~a~~ 325 (474)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66654
No 203
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.38 E-value=0.27 Score=50.68 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 011975 184 GARKALK 190 (474)
Q Consensus 184 ~A~~Ai~ 190 (474)
.+.+|++
T Consensus 211 eiIrClk 217 (1102)
T KOG1924|consen 211 EIIRCLK 217 (1102)
T ss_pred HHHHHHH
Confidence 3344443
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.13 E-value=2.3 Score=38.99 Aligned_cols=178 Identities=11% Similarity=0.148 Sum_probs=104.5
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecC-------CCCCcceEEEEEeccHHHHHHHHH----c---
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-------VSGKSKGYGFILFKTRSGARKALK----E--- 191 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~-------~~g~skG~afV~F~~~~~A~~Ai~----~--- 191 (474)
+.=..|.|.+.||..+++-..+...|-+||+|++|.++.+. ...+..-...+-|-+.+.|-.... .
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999999998765 112333468899999888765442 2
Q ss_pred cCCccCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHH-HHH---H
Q 011975 192 PQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK-LLA---F 267 (474)
Q Consensus 192 ~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~-L~~---~ 267 (474)
+...+.-..+.+.+....-...........+. +. .....-.-.-.....++.|.|- +...+..++ |.+ +
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~---~~---~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~f 163 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADF---SD---YLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPF 163 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccch---hh---HHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhh
Confidence 23456666777766653211110000000000 00 0000000112234455677776 334443333 332 2
Q ss_pred HhccC----CeeEeEeeecC--CCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 268 FSKYG----EIEEGPLGIDK--ATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 268 F~~~G----~i~~v~i~~d~--~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
+..-+ .|++|.|+.-. ...-++.||.++|-+...|...+..+.
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 22223 25667666532 234457899999999999999998876
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.78 E-value=0.17 Score=37.73 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=47.4
Q ss_pred EEEEeccHHHHHHHHHccCCc--cCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEc
Q 011975 175 GFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252 (474)
Q Consensus 175 afV~F~~~~~A~~Ai~~~~~~--~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 252 (474)
|+|+|.+...|++.++.-.+. +.+..+.|.......... ..-.-......++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-----------------------~k~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-----------------------QKFQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-----------------------eEEEEEEcccCCEEEE
Confidence 689999999999999876644 566666665542111110 0001223345679999
Q ss_pred cCCCCCCCHHHHHHHH
Q 011975 253 SNVGSELEPQKLLAFF 268 (474)
Q Consensus 253 ~nLp~~~t~~~L~~~F 268 (474)
.|||....+++|++.+
T Consensus 58 sgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKL 73 (88)
T ss_pred eCCCCCCChhhheeeE
Confidence 9999999999999754
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=0.26 Score=44.97 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=56.4
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCC-eEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g-~~l~v~~a~~ 325 (474)
..=|.|-++|.... ..|..+|++||.|++.... ..-.+-+|.|.+.-+|.+||.+....|+| ..|-|+.|.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 34567777776544 4577789999999887653 22568999999999999999988888887 4567888776
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 54
No 207
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.64 E-value=0.059 Score=58.45 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.6
Q ss_pred CHhHHHHHhccCC
Q 011975 143 KAETLIDAFKQYG 155 (474)
Q Consensus 143 t~~~L~~~f~~~G 155 (474)
|-++|..++..+-
T Consensus 427 s~eel~~lL~~~~ 439 (840)
T PF04147_consen 427 SHEELLELLDGYS 439 (840)
T ss_pred CHHHHHHHHhcCC
Confidence 5678888887653
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.63 E-value=0.016 Score=58.22 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=94.8
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v 203 (474)
...+...+|||+||...+..+-++.+...||.|.+++.+. |+|..|..+.....|+..+.. .+.+..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445667999999999999999999999999998875443 899999999999999999884 466666665
Q ss_pred EEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecC
Q 011975 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~ 283 (474)
..-...-........... .....-......+-++|.|+|....+......|.-.+.+.....+.+.
T Consensus 106 ~~d~q~~~n~~k~~~~~~--------------~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~ 171 (668)
T KOG2253|consen 106 NVDEQTIENADKEKSIAN--------------KESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEA 171 (668)
T ss_pred cchhhhhcCccccccchh--------------hhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHH
Confidence 543111111000000000 000000000114578889998888877777777655544443333321
Q ss_pred CCCCcccEEEEEEcCHHHHHHHH
Q 011975 284 ATGKPKGFCLFVYKTVDAAKKAL 306 (474)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al 306 (474)
....+-++|-+|.+...+-.++
T Consensus 172 -d~h~~e~~~~~~~s~~~~~~~~ 193 (668)
T KOG2253|consen 172 -DDHCLELEKTETESNSALSKEA 193 (668)
T ss_pred -HHHHHHHHHhhcccccccCccc
Confidence 2233344555554444433333
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.56 E-value=0.36 Score=41.86 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=44.3
Q ss_pred CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEEEeccc
Q 011975 260 EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQRAID 325 (474)
Q Consensus 260 t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v~~a~~ 325 (474)
....|+.+|..|+.+..+.+++. =+-..|.|.+.++|.+|...|+ ..|.|..|+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999998887754 4458899999999999999988 568999999999843
No 210
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.49 E-value=1.6 Score=34.32 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=45.4
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
.+.+...|+.++.++|..+...+- .|..++|++|.. .++=.+++.|.+.++|......+|++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 444444555666677776666654 477889988753 35557999999999999999999865
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=0.57 Score=46.72 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCcceEEEcCCCCC-CCHhHHHHHhccC----CCeeEEEEeecC----------CCCC----------------------
Q 011975 128 PVHRKIFVHGLGWD-TKAETLIDAFKQY----GEIEDCKAVCDK----------VSGK---------------------- 170 (474)
Q Consensus 128 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~i~~d~----------~~g~---------------------- 170 (474)
..+++|-|-||.|+ +...+|.-+|..| |.|.+|.|.... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34679999999976 5788999888755 588899875321 0111
Q ss_pred ---------------cceEEEEEeccHHHHHHHHHccCCc-c--CCeeeEEEEc
Q 011975 171 ---------------SKGYGFILFKTRSGARKALKEPQKK-I--GNRMTACQLA 206 (474)
Q Consensus 171 ---------------skG~afV~F~~~~~A~~Ai~~~~~~-~--~gr~~~v~~~ 206 (474)
--=||.|+|.+.+.|....+.+.+. + .+..+.+++.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0117999999999999999999864 3 3344444444
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=0.63 Score=42.56 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=51.5
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCee-eEEEEc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM-TACQLA 206 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~-~~v~~~ 206 (474)
..=|-|-++|+..+ .-|..+|++||.|+... +...-.+-+|.|.+.-+|++||......|.+.. |-|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv------~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHV------TPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeee------cCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 44678888887655 45678999999998764 223334789999999999999998877776654 334443
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.55 E-value=1.1 Score=43.48 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
.++.|+|-.+|..+|-.||..|+..|- .|..++|++|... ++=..+|.|.+.++|....+.+|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCC
Confidence 378999999999999999999998754 5889999997643 3335899999999999999999954
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.26 E-value=0.29 Score=50.90 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=62.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C--ccCCeEEEEEecc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILNCQRAI 324 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~~~g~~l~v~~a~ 324 (474)
.+.++-|.+-..+-.-|..+|.+||.|.+++.+++ -..|.|.|.+.+.|..|+.++. + .+-|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 45555666777788899999999999999998887 4579999999999999999998 4 4568889999987
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
.-+.
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 6553
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.23 E-value=0.36 Score=45.00 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=55.3
Q ss_pred ceEEEcCCCCCCCHhHHH---HHhccCCCeeEEEEeecCC-CCCcce--EEEEEeccHHHHHHHHHccCCc-cCCeeeEE
Q 011975 131 RKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKV-SGKSKG--YGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~i~~d~~-~g~skG--~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v 203 (474)
.-+||-+|+.....+.+. ++|.+||.|..|.+..+.. ....-+ -+||+|...++|..||..-++. +.++.+..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 357888888777655554 5799999999998877662 111111 2899999999999999998865 57776555
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 5543
No 216
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=89.17 E-value=0.74 Score=44.62 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=7.7
Q ss_pred EeccHHHHHHHHHc
Q 011975 178 LFKTRSGARKALKE 191 (474)
Q Consensus 178 ~F~~~~~A~~Ai~~ 191 (474)
.|.+..+....|..
T Consensus 329 ~~Ds~K~~lEv~k~ 342 (654)
T COG5180 329 KFDSSKNLLEVIKS 342 (654)
T ss_pred cccchhHHHHHHHh
Confidence 36666555555554
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.64 E-value=1.1 Score=43.37 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=54.9
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeecCCCCCccc-EEEEEEcCHHHHHHHHHcCC-CccC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKG-FCLFVYKTVDAAKKALEEPH-KNFE 314 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d~~~g~~kg-~afV~F~~~~~A~~Al~~~~-~~~~ 314 (474)
.+.|+|-.+|-.+|-.+|..|+..|- .|..++|+||. .+.. ..+|+|.+.++|..-...+| +.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56899999999999999999998774 57899999963 3344 48999999999999999999 6664
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.20 E-value=0.44 Score=49.62 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc---cCCeeeEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK---IGNRMTACQ 204 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~---~~gr~~~v~ 204 (474)
+...+.++-|.+-..+-.-|..+|.+||.|.+++.+++-+ .|.|.|.+.+.|..|+.+++++ ..|-..+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 3444567777777888899999999999999999888764 6999999999999999999954 477778888
Q ss_pred EcccCCCCCCC
Q 011975 205 LASIGPATTPA 215 (474)
Q Consensus 205 ~~~~~~~~~~~ 215 (474)
++..-+...+.
T Consensus 370 ~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 370 FAKTLPMYEPP 380 (1007)
T ss_pred eccccccccCC
Confidence 88765554444
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.42 E-value=2.3 Score=29.85 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 258 ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 258 ~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.++-++|+..+..|.-. +|..|+ .|| ||.|.+..+|.+|....+ ..+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56788999999998643 344443 343 799999999999999998 6666666543
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.32 E-value=3.1 Score=36.07 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=43.1
Q ss_pred CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC--C-ccCCeeeEEEEcc
Q 011975 143 KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ--K-KIGNRMTACQLAS 207 (474)
Q Consensus 143 t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~--~-~~~gr~~~v~~~~ 207 (474)
..+.|+.+|..|+.+..+.+++.- +-..|.|.+.++|.+|...++ . .+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 357899999999999888776643 348999999999999999998 4 4789999998884
No 221
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=84.09 E-value=2.3 Score=41.41 Aligned_cols=13 Identities=0% Similarity=0.125 Sum_probs=5.2
Q ss_pred HHHHHhccCCeeE
Q 011975 264 LLAFFSKYGEIEE 276 (474)
Q Consensus 264 L~~~F~~~G~i~~ 276 (474)
|..+|.....|..
T Consensus 279 vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 279 VETLYGHQDGVLG 291 (479)
T ss_pred HHHHhCCccceee
Confidence 3344443333433
No 222
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=83.89 E-value=0.51 Score=48.43 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=8.5
Q ss_pred EEEEEcCHHHHHHHHHcC
Q 011975 292 CLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 292 afV~F~~~~~A~~Al~~~ 309 (474)
.||...+.++-..|++.+
T Consensus 624 IFcsImsaeDyiDAFEkl 641 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKL 641 (822)
T ss_pred heeeeecchHHHHHHHHH
Confidence 444444555444444443
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.48 E-value=5 Score=28.95 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHhccCC-----eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 257 SELEPQKLLAFFSKYGE-----IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 257 ~~~t~~~L~~~F~~~G~-----i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++..+|..++...+. |-.|.|. ..|+||+-.. +.|..++..|+ ..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888876654 4567775 3478988765 47888899988 8999999999875
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.37 E-value=1.5 Score=37.20 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=54.4
Q ss_pred ceEEccCCCCCCC-----HHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe-EEEE
Q 011975 248 RKIFVSNVGSELE-----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILNC 320 (474)
Q Consensus 248 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~-~l~v 320 (474)
+++++.+++..+. ......+|.+|-...-.++++. .++.-|.|.+.+.|..|..+++ ..|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4677888876542 2334567777777766666643 6667789999999999999999 889998 8888
Q ss_pred EecccC
Q 011975 321 QRAIDG 326 (474)
Q Consensus 321 ~~a~~~ 326 (474)
-++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 887643
No 225
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=81.93 E-value=0.93 Score=47.57 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.6
Q ss_pred HHHHhcc
Q 011975 147 LIDAFKQ 153 (474)
Q Consensus 147 L~~~f~~ 153 (474)
|..+|.+
T Consensus 339 L~~lLAk 345 (622)
T PF02724_consen 339 LHKLLAK 345 (622)
T ss_pred HHHHHHH
Confidence 3333333
No 226
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.68 E-value=5.5 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc
Q 011975 140 WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 140 ~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
..++-++|+..+..|.- .+|+.|+ || =||.|.+..+|++|....++.
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCC
Confidence 35678899999999963 3455665 43 489999999999999998854
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.80 E-value=5.5 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccH
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR 182 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~ 182 (474)
..-|||.|||.++.-.||+..+.+.+-+ -.+|... -+.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 4469999999999999999999887643 3333332 2456799999654
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.74 E-value=2.8 Score=35.14 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=68.3
Q ss_pred CCCHhHHHHHhcc-CCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccCCCCCCCcCcc
Q 011975 141 DTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVAST 219 (474)
Q Consensus 141 ~~t~~~L~~~f~~-~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~ 219 (474)
..+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++..-.-.+.+..+.+..-.........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~---- 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEV---- 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccccc----
Confidence 3556666665544 232223333221 236899999999999999987666667766666555422111100
Q ss_pred ccccccccccccccccccccccccccccceEEccCCCCC-CCHHHHHHHHhccCCeeEeEee
Q 011975 220 ATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLG 280 (474)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~ 280 (474)
......-=|.|.|||.. ++++.|+.+.+.+|.+..+...
T Consensus 99 ----------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 99 ----------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ----------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 00001124778899976 6889999999999999988763
No 229
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=74.36 E-value=1.8 Score=41.50 Aligned_cols=11 Identities=0% Similarity=-0.281 Sum_probs=4.9
Q ss_pred CCCCHhHHHHH
Q 011975 140 WDTKAETLIDA 150 (474)
Q Consensus 140 ~~~t~~~L~~~ 150 (474)
..++..+|..+
T Consensus 229 ~~v~~~dIe~~ 239 (324)
T PF05285_consen 229 ELVDPSDIEGF 239 (324)
T ss_pred ccCCHHHHHhH
Confidence 34444444433
No 230
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=73.72 E-value=8.6 Score=42.50 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHH-cCCCccCCeEEEEE
Q 011975 299 VDAAKKALE-EPHKNFEGHILNCQ 321 (474)
Q Consensus 299 ~~~A~~Al~-~~~~~~~g~~l~v~ 321 (474)
.|+|..||. .++..|.=.-|.|.
T Consensus 1531 VEAar~~Iv~Ev~~VF~vYGIsVd 1554 (1640)
T KOG0262|consen 1531 VEAARNAIVNEVNNVFKVYGISVD 1554 (1640)
T ss_pred HHHHHHHHHHHHHHhhhheeeeec
Confidence 456655553 33444443444443
No 231
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.28 E-value=1.9 Score=43.85 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=7.7
Q ss_pred EEEEEec-cHHHHHHHHH
Q 011975 174 YGFILFK-TRSGARKALK 190 (474)
Q Consensus 174 ~afV~F~-~~~~A~~Ai~ 190 (474)
|..|... -+.....|+.
T Consensus 526 ~V~v~l~nvP~~i~E~~~ 543 (754)
T KOG1980|consen 526 YVRVFLRNVPVSILEAIK 543 (754)
T ss_pred eEEEEeecCcHHHHHHHh
Confidence 3444444 3344445555
No 232
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=72.10 E-value=2.7 Score=42.11 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.6
Q ss_pred CCCCCC
Q 011975 255 VGSELE 260 (474)
Q Consensus 255 Lp~~~t 260 (474)
|+++|-
T Consensus 405 LHPSWe 410 (432)
T PF09073_consen 405 LHPSWE 410 (432)
T ss_pred CCccHH
Confidence 444443
No 233
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=71.79 E-value=2.3 Score=42.56 Aligned_cols=9 Identities=56% Similarity=0.601 Sum_probs=3.5
Q ss_pred HHHHHHHHc
Q 011975 300 DAAKKALEE 308 (474)
Q Consensus 300 ~~A~~Al~~ 308 (474)
+++.+|-..
T Consensus 410 eAkkk~Ke~ 418 (432)
T PF09073_consen 410 EAKKKAKEK 418 (432)
T ss_pred HHHHHHHHH
Confidence 333333333
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.35 E-value=10 Score=34.57 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=41.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCe-eEeEeeecCCCCCcccEEEEEEcCH-------HHHHHHHHcC
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTV-------DAAKKALEEP 309 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~-------~~A~~Al~~~ 309 (474)
..+-|+|+||+.++--.+|+..+.+.+.+ .++.+- -+.|-||++|-+. .+..+++..+
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 34679999999999999999998887654 444441 2377899999654 3445555444
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.78 E-value=5.9 Score=31.52 Aligned_cols=56 Identities=18% Similarity=0.403 Sum_probs=31.3
Q ss_pred eEEEcCCCCCC---------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccH-HHHHHHHH
Q 011975 132 KIFVHGLGWDT---------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR-SGARKALK 190 (474)
Q Consensus 132 ~l~V~nLp~~~---------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~-~~A~~Ai~ 190 (474)
++.|-|++... +.+.|++.|+.|..+ .|+.+.++. -+.|++.|.|... .--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 46677776443 457899999999887 566777763 5789999999754 33334443
No 236
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.51 E-value=21 Score=36.20 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=59.1
Q ss_pred cccceEEccCCCCC-CCHHHHHHHHhcc----CCeeEeEeeecCC----------CCC----------------------
Q 011975 245 YTQRKIFVSNVGSE-LEPQKLLAFFSKY----GEIEEGPLGIDKA----------TGK---------------------- 287 (474)
Q Consensus 245 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~i~~d~~----------~g~---------------------- 287 (474)
..+++|-|.||.|. +...+|.-+|+.| |.|.+|.|..... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34579999999985 6889999999877 5888988854320 111
Q ss_pred --------------c-ccEEEEEEcCHHHHHHHHHcCC-CccC--CeEEEEEecc
Q 011975 288 --------------P-KGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNCQRAI 324 (474)
Q Consensus 288 --------------~-kg~afV~F~~~~~A~~Al~~~~-~~~~--g~~l~v~~a~ 324 (474)
. .-||.|+|.+.+.|.+....+. ..|. +..|-++|.-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1 2369999999999999999998 6664 4556666654
No 237
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.08 E-value=14 Score=26.10 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHHHHhccCC-eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 262 ~~L~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
++|++-|...|. |..|+-+..+.+..+--.-||++....+ ..+.++ ..|.+..|+|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 467777887774 6777777776677777888898876655 344566 788999999987653
No 238
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=68.57 E-value=17 Score=26.17 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCCHhHHHHHhccCCC-----eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 140 WDTKAETLIDAFKQYGE-----IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 140 ~~~t~~~L~~~f~~~G~-----v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..++..+|..++...+. |-.|+|..+ |+||+-... .|..++..++ ..+.|+.+.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45678888888876643 456665443 789987654 7888888888 5699999998764
No 239
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=68.56 E-value=5.9 Score=33.54 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=43.8
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCC--CcceEEEEEeccHHHHHHHHHccCCc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g--~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
.|+||.+ +.+...++|..+-+ |.+..|.+-+.. .+ ..+|-.||+|.+.+.|.++++.....
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~ 173 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEK 173 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhh
Confidence 4678887 55555566666666 778777644332 34 67899999999999999999876543
No 240
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=67.90 E-value=5.1 Score=35.62 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=6.9
Q ss_pred CCCHhHHHHHhc
Q 011975 141 DTKAETLIDAFK 152 (474)
Q Consensus 141 ~~t~~~L~~~f~ 152 (474)
.++..+++..|+
T Consensus 149 S~DW~Em~~Ais 160 (217)
T PF07423_consen 149 SVDWNEMLKAIS 160 (217)
T ss_pred CcCHHHHHHHHH
Confidence 345666666655
No 241
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=67.82 E-value=21 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHh---ccCCeeEeEeeecCCCCCcccEEEEEEcCHH
Q 011975 255 VGSELEPQKLLAFFS---KYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300 (474)
Q Consensus 255 Lp~~~t~~~L~~~F~---~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~ 300 (474)
-|+.+|..+|+++|. .|-.|.+-.+.+|-----+...||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 478899999999997 4555665556555322334567888887553
No 242
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=67.00 E-value=3.8 Score=35.21 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=4.0
Q ss_pred HHHHHHhcc
Q 011975 263 KLLAFFSKY 271 (474)
Q Consensus 263 ~L~~~F~~~ 271 (474)
+-..+|++|
T Consensus 175 dae~L~~ky 183 (187)
T PF11081_consen 175 DAEALYNKY 183 (187)
T ss_pred HHHHHHHHH
Confidence 334444444
No 243
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.30 E-value=14 Score=34.12 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=61.0
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC-------CCCcccEEEEEEcCHHHHHHH----HHcCC--
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA-------TGKPKGFCLFVYKTVDAAKKA----LEEPH-- 310 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~-------~g~~kg~afV~F~~~~~A~~A----l~~~~-- 310 (474)
...++.|.+.||...++-..+..-|-+||.|++|.++.+.. .-+......+-|-+.+.|..- |+.|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 33467899999999999999999999999999999988751 123346688899998877643 33333
Q ss_pred -CccCCeEEEEEecc
Q 011975 311 -KNFEGHILNCQRAI 324 (474)
Q Consensus 311 -~~~~g~~l~v~~a~ 324 (474)
..|.-..|.|.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 56777788888765
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.62 E-value=6.7 Score=31.18 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=28.6
Q ss_pred ceEEccCCCCCC---------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHH
Q 011975 248 RKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300 (474)
Q Consensus 248 ~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~ 300 (474)
-++.|-|++... +.+.|++.|..|..+. |+.+.++ .-+.|+++|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 478888886543 5578999999998875 5555554 255899999997544
No 245
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=64.05 E-value=2.8 Score=45.17 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.4
Q ss_pred eEEEcCCC
Q 011975 132 KIFVHGLG 139 (474)
Q Consensus 132 ~l~V~nLp 139 (474)
-+||--+|
T Consensus 906 ~~wvl~~P 913 (1096)
T TIGR00927 906 AIYLFLLP 913 (1096)
T ss_pred eEeEEecc
Confidence 34444444
No 246
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=63.74 E-value=1.1e+02 Score=28.27 Aligned_cols=8 Identities=50% Similarity=0.904 Sum_probs=3.8
Q ss_pred CCCCCCCC
Q 011975 465 GQYGAPYM 472 (474)
Q Consensus 465 G~~g~~~~ 472 (474)
+.+|-|+|
T Consensus 241 ~~pgtpim 248 (354)
T KOG4594|consen 241 GPPGTPIM 248 (354)
T ss_pred CCCCCCcC
Confidence 34445554
No 247
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.63 E-value=20 Score=34.54 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=49.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCe-eEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHI 317 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~ 317 (474)
..+.|-|.++|...-.++|..+|..|+.- -+|.++-| -.||-.|.+...|..||-.-+.++.=|.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccCceEEeee
Confidence 45789999999999888999999999653 34555443 3699999999999999976544333333
No 248
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.19 E-value=18 Score=25.56 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHHHHHHhccCC-eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 262 ~~L~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.+|.+.|..+|. +..|+-++.+.+..+-..-||+.....+-.. .++ +.|.++++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 367788888884 6778877777777777888888876543333 556 78999999987654
No 249
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=62.00 E-value=9.3 Score=42.26 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=8.7
Q ss_pred CCCCCCCHhHHHHHhc
Q 011975 137 GLGWDTKAETLIDAFK 152 (474)
Q Consensus 137 nLp~~~t~~~L~~~f~ 152 (474)
.||.....-+|..+.+
T Consensus 1448 ~lp~~~~k~~mssiVe 1463 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMSSIVE 1463 (1640)
T ss_pred EecCCCcchHHHHHHH
Confidence 3666655555555443
No 250
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=5.4 Score=37.75 Aligned_cols=6 Identities=33% Similarity=1.110 Sum_probs=2.4
Q ss_pred EEEEEe
Q 011975 174 YGFILF 179 (474)
Q Consensus 174 ~afV~F 179 (474)
|-|-.|
T Consensus 455 Ytytv~ 460 (520)
T KOG4434|consen 455 YTYTVF 460 (520)
T ss_pred eEEEEE
Confidence 444333
No 251
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=59.37 E-value=72 Score=34.01 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=15.1
Q ss_pred cceEEEEEeccHHHHHHHHHcc
Q 011975 171 SKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 171 skG~afV~F~~~~~A~~Ai~~~ 192 (474)
..|.|.+-|-+..-...|+...
T Consensus 630 WQGIalLPFiDe~rLl~a~~~~ 651 (931)
T KOG2044|consen 630 WQGIALLPFIDERRLLSAVAKV 651 (931)
T ss_pred ccccccccccchhhHHHHHHhh
Confidence 5677877777777666666543
No 252
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=55.48 E-value=12 Score=37.17 Aligned_cols=12 Identities=0% Similarity=-0.332 Sum_probs=6.8
Q ss_pred ccEEEEEEcCHH
Q 011975 289 KGFCLFVYKTVD 300 (474)
Q Consensus 289 kg~afV~F~~~~ 300 (474)
..-|.+.+.+..
T Consensus 441 ~r~ap~~~s~~~ 452 (694)
T KOG4264|consen 441 SRRAPSHQSDRN 452 (694)
T ss_pred cccccccccccc
Confidence 445677776543
No 253
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.83 E-value=2.6 Score=40.76 Aligned_cols=77 Identities=4% Similarity=-0.234 Sum_probs=63.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.+.|+..||...++.+|.=+|+.||.|..+.+-+....+..+-++||+-.+ .+|..||..+. ..+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 367889999999999999999999999988877766667777788888765 56777887777 788888888877764
No 254
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.79 E-value=40 Score=23.87 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=42.7
Q ss_pred hHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 145 ETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 145 ~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
++|.+-|...| .|..|+-+..+.+....-.-||++....+. .+.++ ..|++..+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCC
Confidence 46777777777 577887777776777777888888876652 23344 56788888888764
No 255
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=52.26 E-value=6.9 Score=37.61 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCcceEEEcCCCCCCCHh--------HHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 128 PVHRKIFVHGLGWDTKAE--------TLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~--------~L~~~f~~--~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
...|.+|+.++....+.+ +|..+|.+ .+.+..|+..++.....++|..|++|.....+++++...
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 345679999998776655 99999999 678888888888777889999999999999999998643
No 256
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.09 E-value=43 Score=24.84 Aligned_cols=58 Identities=5% Similarity=0.130 Sum_probs=42.8
Q ss_pred eEEEcCCCCCCCHhHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
+.|+--++..++..+|+..++. |+ .|..|+.+.-+ . ..--|||.|.....|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 4566667899999999999988 44 57777776654 2 2234999999988888776544
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.14 E-value=2 Score=42.73 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=48.3
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~ 193 (474)
.++|||+|++++++-.+|..+|+.+--+..+.+.......+..-+.+|+|..--....|+.+|+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 4689999999999999999999988766666544433345566789999986666666666555
No 258
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=51.07 E-value=37 Score=24.03 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=41.8
Q ss_pred hHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 145 ETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 145 ~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+|++.|...| .|..|+-+..+.++.....-||+.....+-.. .++ +.|+++.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777888877 57888888877666666677888776543333 334 55788888887764
No 259
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=50.69 E-value=7.9 Score=37.21 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred cceEEccCCCCCCCH--------HHHHHHHhc--cCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 247 QRKIFVSNVGSELEP--------QKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~--------~~L~~~F~~--~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
.+.+|+.++....+. ++|..+|.. ++++..|+.-++.....++|-.|++|.....|.+.+...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 357888887766544 499999999 677888888888666788999999999999999999533
No 260
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.13 E-value=11 Score=34.22 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCC------------CHhHHHHHhccCCCeeEEEEe
Q 011975 131 RKIFVHGLGWDT------------KAETLIDAFKQYGEIEDCKAV 163 (474)
Q Consensus 131 ~~l~V~nLp~~~------------t~~~L~~~f~~~G~v~~v~i~ 163 (474)
-|||+-+||-.| +++-|+..|..||.|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 489999998432 577899999999999988773
No 261
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.12 E-value=48 Score=24.16 Aligned_cols=58 Identities=5% Similarity=0.132 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCCHhHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
+-|+-.++..++..+|+..++. |+ .|..|+.+.-+ . ..--|||.+..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 4677778999999999999987 44 46677766554 2 2224999998888877765543
No 262
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=49.66 E-value=8 Score=38.64 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=11.6
Q ss_pred eEEEcCCCCCCCHhHHHHHh
Q 011975 132 KIFVHGLGWDTKAETLIDAF 151 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f 151 (474)
+-.|+.||--++.++...++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 34556677666666655444
No 263
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.45 E-value=17 Score=34.93 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=10.4
Q ss_pred EEcCCCCCCCHhHHHHHhcc
Q 011975 134 FVHGLGWDTKAETLIDAFKQ 153 (474)
Q Consensus 134 ~V~nLp~~~t~~~L~~~f~~ 153 (474)
|---||..-|..+|...|-.
T Consensus 354 fAq~lp~i~~p~d~y~~F~~ 373 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVD 373 (514)
T ss_pred ccccCCccCCcchhhhhhee
Confidence 44445555555666555543
No 264
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.87 E-value=3.8 Score=39.66 Aligned_cols=76 Identities=5% Similarity=-0.134 Sum_probs=59.3
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+.|+..||...++.+|.-+|..||.|..+.+.+..+.+..+-.+||.-.+ .++..||..+. ..+++..+++.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 457888999999999999999999999998887777777888888988665 45677776665 45666666665553
No 265
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=46.28 E-value=16 Score=36.44 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=12.1
Q ss_pred eEEEEEeccHHHHHHHHHc
Q 011975 173 GYGFILFKTRSGARKALKE 191 (474)
Q Consensus 173 G~afV~F~~~~~A~~Ai~~ 191 (474)
||-.++|..-+.-..-|..
T Consensus 245 G~~~~e~~KGDQYI~Dm~n 263 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYN 263 (641)
T ss_pred Cceeeeeeccchhhhhhhc
Confidence 6777777766665555543
No 266
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.10 E-value=26 Score=31.89 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=28.5
Q ss_pred cccceEEccCCCCCC------------CHHHHHHHHhccCCeeEeEee
Q 011975 245 YTQRKIFVSNVGSEL------------EPQKLLAFFSKYGEIEEGPLG 280 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~------------t~~~L~~~F~~~G~i~~v~i~ 280 (474)
....||++.+||-.| +++.|+..|+.||.|..|.|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 344589998888543 578899999999999888774
No 267
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.44 E-value=3.4 Score=41.22 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=46.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCH---HHHHHHHHc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV---DAAKKALEE 308 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~---~~A~~Al~~ 308 (474)
..++|||+|++++++-.+|..+|..+-.+..+.+-.+....+...+.+|+|+-. ..|.-||..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 357899999999999999999999987777776644433344566788999744 445555543
No 268
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.19 E-value=48 Score=22.90 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.0
Q ss_pred hHHHHHhccCCCeeEEEE
Q 011975 145 ETLIDAFKQYGEIEDCKA 162 (474)
Q Consensus 145 ~~L~~~f~~~G~v~~v~i 162 (474)
.+|+++|+.+|.|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999966644
No 269
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=44.52 E-value=9.4 Score=36.21 Aligned_cols=9 Identities=0% Similarity=-0.071 Sum_probs=4.0
Q ss_pred ceEEEcCCC
Q 011975 131 RKIFVHGLG 139 (474)
Q Consensus 131 ~~l~V~nLp 139 (474)
.+|+.--+|
T Consensus 399 HtVh~pyFP 407 (520)
T KOG4434|consen 399 HTVHSPYFP 407 (520)
T ss_pred eeeccCCCc
Confidence 345544343
No 270
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.45 E-value=53 Score=24.37 Aligned_cols=57 Identities=9% Similarity=-0.068 Sum_probs=40.9
Q ss_pred EEccCCCCCCCHHHHHHHHhcc--CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 250 IFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 250 l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
-|+--++..++..+|++.++.+ -.|.+|+.+.-+ ...--|||+|.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 4444467889999999999875 357788776553 12335999999988888776544
No 271
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=43.88 E-value=8.1 Score=37.87 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=10.6
Q ss_pred ceEEEcCCCCCCCHhHHHH
Q 011975 131 RKIFVHGLGWDTKAETLID 149 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~ 149 (474)
.+||-+-..+.+..++|.+
T Consensus 317 Ykvftr~fDe~v~aeelcd 335 (620)
T COG4547 317 YKVFTREFDEIVLAEELCD 335 (620)
T ss_pred ccccchhhhhhhhHHHhhh
Confidence 4566666655555555543
No 272
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=43.75 E-value=58 Score=23.72 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=40.7
Q ss_pred eEEccCCCCCCCHHHHHHHHhcc-C-CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKY-G-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~-G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
.-|+-.++..++..+|++.++.+ + .|.+|+.+.-+ ...--|||++..-+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 35555678899999999988874 3 56777765543 12334999998888887765443
No 273
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=43.50 E-value=70 Score=34.05 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.3
Q ss_pred EEeccH
Q 011975 177 ILFKTR 182 (474)
Q Consensus 177 V~F~~~ 182 (474)
+.|.+.
T Consensus 297 ~r~~~~ 302 (756)
T KOG2375|consen 297 VRFENE 302 (756)
T ss_pred hhhhhh
Confidence 333333
No 274
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.35 E-value=23 Score=34.13 Aligned_cols=7 Identities=14% Similarity=0.263 Sum_probs=2.8
Q ss_pred EEEEecc
Q 011975 175 GFILFKT 181 (474)
Q Consensus 175 afV~F~~ 181 (474)
+|+.+.+
T Consensus 370 ~F~~~vn 376 (514)
T KOG3130|consen 370 AFVDVVN 376 (514)
T ss_pred hheeccc
Confidence 3444333
No 275
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=40.53 E-value=1.1e+02 Score=20.60 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=41.8
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCH----HHHHHHHHcC
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV----DAAKKALEEP 309 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~----~~A~~Al~~~ 309 (474)
+|.|.||.-.-....|.+.+...-.|..+.+-.. .+.+-|.|... +...++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 5778888888888999999999988988887543 56788888744 5556666553
No 276
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=40.49 E-value=20 Score=38.42 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=5.0
Q ss_pred HHHHHhccCCCe
Q 011975 146 TLIDAFKQYGEI 157 (474)
Q Consensus 146 ~L~~~f~~~G~v 157 (474)
.|-.++++-|.+
T Consensus 178 tL~~IyEqrGd~ 189 (895)
T KOG2076|consen 178 TLGEIYEQRGDI 189 (895)
T ss_pred HHHHHHHHcccH
Confidence 333444444443
No 277
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.03 E-value=12 Score=34.27 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.5
Q ss_pred CCCCCHHHHHH
Q 011975 256 GSELEPQKLLA 266 (474)
Q Consensus 256 p~~~t~~~L~~ 266 (474)
...+|.++|..
T Consensus 182 ~~~lTQeElL~ 192 (240)
T PF05764_consen 182 ERPLTQEELLE 192 (240)
T ss_pred CCCCCHHHHHH
Confidence 34455555544
No 278
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.99 E-value=23 Score=31.57 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC 160 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v 160 (474)
......++||+-|||..+|++.|..+.+.+|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 344556799999999999999999999999866544
No 279
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.73 E-value=49 Score=31.65 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.1
Q ss_pred EEEEeccHHHHHHHHHccCCccCCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccC
Q 011975 175 GFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSN 254 (474)
Q Consensus 175 afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 254 (474)
|||+|.+..+|..|++.+...-. +...+..|. ..+-|+-.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~AP--------------------------------------eP~DI~W~N 41 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAP--------------------------------------EPDDIIWEN 41 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCC--------------------------------------Ccccccccc
Confidence 79999999999999996543322 233454442 112577788
Q ss_pred CCCCCCHHHHHHHHhc
Q 011975 255 VGSELEPQKLLAFFSK 270 (474)
Q Consensus 255 Lp~~~t~~~L~~~F~~ 270 (474)
|..+..+..+|.++..
T Consensus 42 L~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 42 LSISSKQRFLRRIIVN 57 (325)
T ss_pred cCCChHHHHHHHHHHH
Confidence 8777777777766553
No 280
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=39.68 E-value=10 Score=35.38 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=3.0
Q ss_pred eEEEcC
Q 011975 132 KIFVHG 137 (474)
Q Consensus 132 ~l~V~n 137 (474)
.+|..+
T Consensus 86 ~~F~~~ 91 (285)
T PF03896_consen 86 ILFPKP 91 (285)
T ss_pred EEeccc
Confidence 455554
No 281
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=39.50 E-value=18 Score=36.77 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=8.5
Q ss_pred ceEEEcCCCCCCCH
Q 011975 131 RKIFVHGLGWDTKA 144 (474)
Q Consensus 131 ~~l~V~nLp~~~t~ 144 (474)
.+--|+|||..+-+
T Consensus 119 ~rntvgnipl~wYd 132 (733)
T KOG0650|consen 119 TRNTVGNIPLKWYD 132 (733)
T ss_pred hhcccCCccccccc
Confidence 34567788765543
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.82 E-value=25 Score=31.32 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP 278 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~ 278 (474)
...+||+-|+|..+|++.|.++.+++|.+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 346999999999999999999999998765443
No 283
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.77 E-value=1.8e+02 Score=30.95 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHhccCCe-----eEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 257 SELEPQKLLAFFSKYGEI-----EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 257 ~~~t~~~L~~~F~~~G~i-----~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
..++..+|..++..-+.| -.|.|. ..|.||+... ..|...+..|+ ..+.|+.|.|..+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 567777887777665554 345554 3478888754 55788888887 889999999998753
No 284
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=38.02 E-value=11 Score=38.91 Aligned_cols=23 Identities=9% Similarity=0.119 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHhccCCeeEeEee
Q 011975 257 SELEPQKLLAFFSKYGEIEEGPLG 280 (474)
Q Consensus 257 ~~~t~~~L~~~F~~~G~i~~v~i~ 280 (474)
..+|++.|+.++. -.+|+.-.|+
T Consensus 462 ~~vTEe~VrryL~-rkPmTTkdLL 484 (527)
T PF05793_consen 462 SGVTEEEVRRYLR-RKPMTTKDLL 484 (527)
T ss_dssp SS--HHHHHHHHH-HS-B-HHHHH
T ss_pred cCcCHHHHHHHHh-cCCccHHHHH
Confidence 4578888888887 3555543333
No 285
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=37.01 E-value=21 Score=37.33 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=12.4
Q ss_pred CCCCC----CHhHHHHHhccCC
Q 011975 138 LGWDT----KAETLIDAFKQYG 155 (474)
Q Consensus 138 Lp~~~----t~~~L~~~f~~~G 155 (474)
||+.+ |-++|.+++.++-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 66554 6778888887664
No 286
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=35.96 E-value=50 Score=33.51 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=13.0
Q ss_pred cEEEEEEcCHHHHHHHHHcCC
Q 011975 290 GFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~ 310 (474)
.+.|.+-.+.++-...|.+|-
T Consensus 39 ~hVF~K~~tkDEYl~lvAkli 59 (742)
T KOG4274|consen 39 SHVFLKAKTKDEYLSLVAKLI 59 (742)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 356666677777666665543
No 287
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=35.67 E-value=14 Score=37.59 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=7.0
Q ss_pred ccEEEEEEcC
Q 011975 289 KGFCLFVYKT 298 (474)
Q Consensus 289 kg~afV~F~~ 298 (474)
+||-|.+|..
T Consensus 320 rG~rFSTYA~ 329 (509)
T PRK05901 320 KGYKFSTYAT 329 (509)
T ss_pred cCCCchhhhH
Confidence 6777777764
No 288
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=35.39 E-value=3.5e+02 Score=25.99 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=30.9
Q ss_pred eEEccCCCCCCCHHHH---HHHHhccCCeeEeEeeecCCCCCcccEEEEEEc
Q 011975 249 KIFVSNVGSELEPQKL---LAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L---~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (474)
..++.+||..+-+..+ +.++.+. .+.+|.|..+...+.+.|++.+-+.
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 5778899988876554 4556662 2234455555545788888876664
No 289
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.62 E-value=16 Score=37.52 Aligned_cols=8 Identities=13% Similarity=0.659 Sum_probs=4.6
Q ss_pred eEEEcCCC
Q 011975 132 KIFVHGLG 139 (474)
Q Consensus 132 ~l~V~nLp 139 (474)
+|||+|+|
T Consensus 528 ~v~l~nvP 535 (754)
T KOG1980|consen 528 RVFLRNVP 535 (754)
T ss_pred EEEeecCc
Confidence 55555555
No 290
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=32.95 E-value=15 Score=37.80 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=9.6
Q ss_pred cceEEEcCCCCCCCHhH
Q 011975 130 HRKIFVHGLGWDTKAET 146 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~ 146 (474)
..+||-.-....+..++
T Consensus 295 ~Y~vfTt~fDe~i~A~~ 311 (600)
T TIGR01651 295 DYKVFTTAFDETVDAEE 311 (600)
T ss_pred cceecchhhhhhccHhh
Confidence 45677666665554443
No 291
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=32.05 E-value=28 Score=34.34 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.1
Q ss_pred CccCCeeeEEE
Q 011975 194 KKIGNRMTACQ 204 (474)
Q Consensus 194 ~~~~gr~~~v~ 204 (474)
+.+.||+|.|-
T Consensus 424 GSMrGRpItvA 434 (620)
T COG4547 424 GSMRGRPITVA 434 (620)
T ss_pred CCcCCcceehh
Confidence 34455554443
No 292
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.49 E-value=73 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=23.5
Q ss_pred EEEEEcCHHHHHHHHHcCC--CccCCeEEEEEe
Q 011975 292 CLFVYKTVDAAKKALEEPH--KNFEGHILNCQR 322 (474)
Q Consensus 292 afV~F~~~~~A~~Al~~~~--~~~~g~~l~v~~ 322 (474)
|+|+|.+..-|.+.++.-. -.++++.+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999998766 456666655543
No 293
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.17 E-value=30 Score=36.11 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=8.7
Q ss_pred eccHHHHHHHHHccC
Q 011975 179 FKTRSGARKALKEPQ 193 (474)
Q Consensus 179 F~~~~~A~~Ai~~~~ 193 (474)
|-..+...+|+..+.
T Consensus 276 ~M~~~~W~~~~~~i~ 290 (595)
T PF05470_consen 276 YMPIEQWKKCLNNIN 290 (595)
T ss_pred CcCHHHHHHHHHHHH
Confidence 455566666665555
No 294
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=28.19 E-value=19 Score=37.05 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=6.6
Q ss_pred CCCCHHHHHHHHh
Q 011975 257 SELEPQKLLAFFS 269 (474)
Q Consensus 257 ~~~t~~~L~~~F~ 269 (474)
..+|..+|...|.
T Consensus 476 kPmTTkdLL~kFk 488 (527)
T PF05793_consen 476 KPMTTKDLLKKFK 488 (527)
T ss_dssp S-B-HHHHHHHTS
T ss_pred CCccHHHHHHHHH
Confidence 4566666666664
No 295
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.11 E-value=82 Score=26.97 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCC--CcccEEEEEEcCHHHHHHHHHcCC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG--KPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g--~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
+++|.. +.....++|.++-+ |.+..|.+-+.. .+ ..+|-.||+|.+.+.|.+++....
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 466666 33333344444444 677777664432 22 557889999999999999887655
No 296
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=27.68 E-value=29 Score=33.04 Aligned_cols=6 Identities=17% Similarity=0.717 Sum_probs=3.1
Q ss_pred ceEEcc
Q 011975 248 RKIFVS 253 (474)
Q Consensus 248 ~~l~V~ 253 (474)
++|||+
T Consensus 340 tSvFir 345 (449)
T KOG3871|consen 340 TSVFIR 345 (449)
T ss_pred chHHHH
Confidence 455554
No 297
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=27.68 E-value=2.1e+02 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=15.1
Q ss_pred EEEE--EeccHHHHHHHHHccCCcc
Q 011975 174 YGFI--LFKTRSGARKALKEPQKKI 196 (474)
Q Consensus 174 ~afV--~F~~~~~A~~Ai~~~~~~~ 196 (474)
|||+ .+.+......+|+.|...+
T Consensus 124 ~~~~s~lnl~~~~~~~~ikqL~~yv 148 (308)
T KOG3034|consen 124 FGFLSFLNLTARKDTKCIKQLQEYV 148 (308)
T ss_pred ceEEEEeehhhhccchHHHHHHHHH
Confidence 5554 4456677788888776543
No 298
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=27.04 E-value=38 Score=35.14 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.3
Q ss_pred CCCCHh
Q 011975 140 WDTKAE 145 (474)
Q Consensus 140 ~~~t~~ 145 (474)
+.+++.
T Consensus 187 y~i~ds 192 (661)
T KOG2256|consen 187 YVITDS 192 (661)
T ss_pred eeechH
Confidence 333333
No 299
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=26.99 E-value=64 Score=33.78 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=10.3
Q ss_pred EEEEEeccHHHHHHHHHccC
Q 011975 174 YGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 174 ~afV~F~~~~~A~~Ai~~~~ 193 (474)
+.|.....-..+...|..+-
T Consensus 274 ~~~M~~~~W~~~~~~i~~Ll 293 (595)
T PF05470_consen 274 SDYMPIEQWKKCLNNINELL 293 (595)
T ss_pred ccCcCHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 300
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.69 E-value=67 Score=31.04 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=43.8
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCC-eeEEEEeecC-CC-CCcceEEEEEeccHHHHHHHHHccCCc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDK-VS-GKSKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~d~-~~-g~skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
...|.|++||+..|+++|.+-..+|-. |......... .. ..-.+.|||.|...++.......+++.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 357999999999999999988777542 2112111110 00 112467999999999977777776643
No 301
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.53 E-value=16 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=21.2
Q ss_pred cccEEEEEEcC-HHHHHHHHHcCCCccCCeEEEEEecc
Q 011975 288 PKGFCLFVYKT-VDAAKKALEEPHKNFEGHILNCQRAI 324 (474)
Q Consensus 288 ~kg~afV~F~~-~~~A~~Al~~~~~~~~g~~l~v~~a~ 324 (474)
++|||||...+ ..+.--.-..|+.-++|-++.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 48999999987 22322233455556777777776665
No 302
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=26.35 E-value=52 Score=32.63 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=6.9
Q ss_pred CCCcceEEEEE
Q 011975 168 SGKSKGYGFIL 178 (474)
Q Consensus 168 ~g~skG~afV~ 178 (474)
-+.+.||.|-.
T Consensus 242 i~~FSGF~w~~ 252 (594)
T KOG2266|consen 242 IGQFSGFVWSK 252 (594)
T ss_pred hhcccCccccc
Confidence 45666777665
No 303
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=25.78 E-value=57 Score=27.97 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCC-----HhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCe-eeEE
Q 011975 131 RKIFVHGLGWDTK-----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNR-MTAC 203 (474)
Q Consensus 131 ~~l~V~nLp~~~t-----~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr-~~~v 203 (474)
.++++.+|+..+- ......+|.+|-+....++++ +.++.-|.|.+++.|..|.-.++ ..+.+. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777775542 223445666666555444443 34567899999999999998888 457666 6666
Q ss_pred EEccc
Q 011975 204 QLASI 208 (474)
Q Consensus 204 ~~~~~ 208 (474)
.++..
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 66543
No 304
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=25.11 E-value=1.2e+02 Score=26.16 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=39.7
Q ss_pred HhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 144 ~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
-+.|.+-|.++-.|..|..+.+. .--.|-.++|.......-...+..+-..+.++.+.+..
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~ 117 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSE 117 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecC
Confidence 67888888888888888877665 45566778888876433333343333445566665544
No 305
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=24.63 E-value=53 Score=32.99 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=8.4
Q ss_pred CcccEEEEEEcCHHH
Q 011975 287 KPKGFCLFVYKTVDA 301 (474)
Q Consensus 287 ~~kg~afV~F~~~~~ 301 (474)
...|.+.|-|.-.++
T Consensus 476 sgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 476 SGDGTAHVYYDPNES 490 (641)
T ss_pred cCCCceEEEECcccc
Confidence 334666776654443
No 306
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=24.62 E-value=2.8e+02 Score=24.24 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=4.2
Q ss_pred HHHHHHHcC
Q 011975 301 AAKKALEEP 309 (474)
Q Consensus 301 ~A~~Al~~~ 309 (474)
.|..||.+.
T Consensus 12 vaalaisah 20 (311)
T PF12782_consen 12 VAALAISAH 20 (311)
T ss_pred HHHHHHHHh
Confidence 444455443
No 307
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.57 E-value=91 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEEEEcCHHHHHHHHHcCC-CccCCeE
Q 011975 291 FCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (474)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~~~g~~ 317 (474)
+.+|.|.+..+|.+|-+.|. ..+..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 68999999999999998887 5554443
No 308
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.09 E-value=69 Score=30.93 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=41.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCC-eeEeEeeecCC--CCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLGIDKA--TGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~d~~--~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
..|.|++||...++.+|.+...+|-. |....+..... ...-.+++||.|...++...-..-++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~ 73 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFD 73 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCC
Confidence 48999999999999999988877643 33333321110 12226789999999998555444443
No 309
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.58 E-value=1.4e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=23.4
Q ss_pred CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 273 EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
.|.++..+. ..+||-||+=.+..++..|++.+.
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-T
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhccc
Confidence 455555432 359999999999999999999876
No 310
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.46 E-value=96 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.9
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
...|+||||++|..-|..++...-.+....++.
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 688999999999999999998765554444443
No 311
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=22.94 E-value=34 Score=31.84 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=5.5
Q ss_pred CHhHHHHHhccC
Q 011975 143 KAETLIDAFKQY 154 (474)
Q Consensus 143 t~~~L~~~f~~~ 154 (474)
|+++....+...
T Consensus 152 teEEr~~ed~~~ 163 (276)
T PF06991_consen 152 TEEERRAEDREN 163 (276)
T ss_pred CHHHHHHHHHhh
Confidence 444444444433
No 312
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=22.81 E-value=97 Score=31.40 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=11.6
Q ss_pred EEccCCCCCCCHHHHHHHHh
Q 011975 250 IFVSNVGSELEPQKLLAFFS 269 (474)
Q Consensus 250 l~V~nLp~~~t~~~L~~~F~ 269 (474)
.++-|++..+++..||..+.
T Consensus 476 k~~p~~~~~v~e~~vR~~l~ 495 (555)
T KOG2393|consen 476 KTVPGSDIKVNEEAVRRYLE 495 (555)
T ss_pred ccCCCcccchhHHHHHHHHh
Confidence 44445555666666666655
No 313
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.76 E-value=1.9e+02 Score=20.46 Aligned_cols=45 Identities=7% Similarity=0.126 Sum_probs=37.5
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (474)
.+|+|.++.-.--...+.+.+.....|..+.+-.+ ++-++|.|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 47888888887788899999999988988888665 5569999987
No 314
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=22.66 E-value=6.9e+02 Score=24.00 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=30.3
Q ss_pred eEEccCCCCCCCHHH---HHHHHhccCCeeEeEeeecCCCCCcccEEEEEEc
Q 011975 249 KIFVSNVGSELEPQK---LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~---L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (474)
..++.+||..+-+.. .+.++.+++...++.+... ..+.+.|++++-+.
T Consensus 190 ~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 190 IAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec-cCCCCCcEEEEEEE
Confidence 677889998876644 4456666665444443321 46677888876664
No 315
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=22.61 E-value=1e+03 Score=25.94 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=12.4
Q ss_pred cceEEccCCCCCCCHHHHHHHHhcc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKY 271 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~ 271 (474)
...|||.+-.... +-|+++.++.
T Consensus 667 ~d~Lfi~~~hp~~--e~i~~lysk~ 689 (931)
T KOG2044|consen 667 PDLLFISDKHPLF--EFILQLYSKK 689 (931)
T ss_pred CceEEecCCCchH--HHHHHHHHhh
Confidence 3467777654443 5555555543
No 316
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.33 E-value=28 Score=24.54 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=26.4
Q ss_pred HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 262 ~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
++|.+.|..+.....+.- =.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vk----------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK----------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhh----------hhhccCCCCHHHHHHHHHHh
Confidence 678888776544433321 13799999999999888765
No 317
>PRK11901 hypothetical protein; Reviewed
Probab=22.00 E-value=1.6e+02 Score=27.99 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEE--EeccHHHHHHHHHcc
Q 011975 134 FVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI--LFKTRSGARKALKEP 192 (474)
Q Consensus 134 ~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV--~F~~~~~A~~Ai~~~ 192 (474)
|.=.|--...++.|..|..+++ +..++|+.....|+.- |..| .|.+.++|..||..|
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhC
No 318
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.89 E-value=24 Score=33.61 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=38.0
Q ss_pred HhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC
Q 011975 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK 194 (474)
Q Consensus 144 ~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~ 194 (474)
...|.+++.+.|.|..-.+.+.. +.|.+||..-..++++++++.+..
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHh
Confidence 46888888999988766555544 567899999999999999998874
No 319
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.89 E-value=2.2e+02 Score=21.90 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred CCCCHhHHHHHhc-cCCCeeEEEEeecCC----CCCcceEEEEEeccHHHHHHH
Q 011975 140 WDTKAETLIDAFK-QYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKA 188 (474)
Q Consensus 140 ~~~t~~~L~~~f~-~~G~v~~v~i~~d~~----~g~skG~afV~F~~~~~A~~A 188 (474)
.+.+..+|++-+. .|+.=.+..++..-. .+++.|||.| |.+.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 3556777776554 354322332332222 3577788777 5666665543
No 320
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=21.79 E-value=45 Score=34.30 Aligned_cols=15 Identities=0% Similarity=-0.060 Sum_probs=6.9
Q ss_pred CCCCCHhHHHHHhcc
Q 011975 139 GWDTKAETLIDAFKQ 153 (474)
Q Consensus 139 p~~~t~~~L~~~f~~ 153 (474)
|..+.+++-..++.+
T Consensus 754 pskldeddscslltk 768 (1329)
T KOG4156|consen 754 PSKLDEDDSCSLLTK 768 (1329)
T ss_pred ccccccccchhhhcc
Confidence 334444444444444
No 321
>PF14893 PNMA: PNMA
Probab=21.08 E-value=78 Score=30.39 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFK 152 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~ 152 (474)
..+.|.|.+||.+|++++|.+.+.
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHH
Confidence 356899999999999999887754
No 322
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.88 E-value=61 Score=33.52 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=3.2
Q ss_pred EEEeecC
Q 011975 160 CKAVCDK 166 (474)
Q Consensus 160 v~i~~d~ 166 (474)
|.|+.|-
T Consensus 395 V~LLID~ 401 (600)
T TIGR01651 395 VTLLIDN 401 (600)
T ss_pred EEEEEEC
Confidence 3445553
No 323
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=20.85 E-value=1.5e+02 Score=31.65 Aligned_cols=9 Identities=0% Similarity=-0.200 Sum_probs=4.1
Q ss_pred eEEEcCCCC
Q 011975 132 KIFVHGLGW 140 (474)
Q Consensus 132 ~l~V~nLp~ 140 (474)
...++.+..
T Consensus 478 cCilGHVDT 486 (1064)
T KOG1144|consen 478 CCILGHVDT 486 (1064)
T ss_pred EEEeecccc
Confidence 344455543
No 324
>COG4907 Predicted membrane protein [Function unknown]
Probab=20.69 E-value=87 Score=31.08 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCC
Q 011975 433 VSPSVIGGYANQGGYPNQQMPQGGAGR 459 (474)
Q Consensus 433 ~~p~~~g~~~~~~~~~~~~~g~gg~g~ 459 (474)
.+....+-.|+++|..+++.|+||||+
T Consensus 568 a~S~~~~~~GGG~G~~gGg~GGGGGGa 594 (595)
T COG4907 568 ASSRRSSSSGGGGGFSGGGSGGGGGGA 594 (595)
T ss_pred cccccCCCCCCCCCcCCCCCCCCCCCC
No 325
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=20.48 E-value=3.8e+02 Score=22.62 Aligned_cols=61 Identities=5% Similarity=0.111 Sum_probs=33.8
Q ss_pred CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 143 KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 143 t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
.-+.|..-+.+.-.|..|.-+.+. .--.|-.++|...........+..+-..+.++.+.+.
T Consensus 55 ~i~qi~kQl~Kli~V~~V~~~~~~-~~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~ 115 (157)
T TIGR00119 55 VLEQITKQLNKLVDVIKVSDLTES-AIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVS 115 (157)
T ss_pred HHHHHHHHHhcCccEEEEEecCCC-cceeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEec
Confidence 344445555555566666554443 3456667888887654444444444344556665553
No 326
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.28 E-value=2.5e+02 Score=23.32 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCHhHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHH
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai 189 (474)
+.|+--+...++..+|+..++. |+ .|..|+.+..+ .|.- -|||.|....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHHH
Confidence 4555567889999999999987 43 46666665544 2222 4999998777654443
No 327
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.17 E-value=80 Score=19.15 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhccC
Q 011975 257 SELEPQKLLAFFSKYG 272 (474)
Q Consensus 257 ~~~t~~~L~~~F~~~G 272 (474)
..+++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
Done!