Query 011975
Match_columns 474
No_of_seqs 421 out of 4122
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.1E-36 1.7E-40 266.7 21.5 179 126-330 9-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 1.3E-36 4.5E-41 273.6 12.9 166 129-326 14-181 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 1.8E-34 6.1E-39 249.5 19.3 163 131-324 1-165 (166)
4 2cjk_A Nuclear polyadenylated 100.0 2.9E-35 9.8E-40 254.9 13.6 164 129-326 2-166 (167)
5 2qfj_A FBP-interacting repress 100.0 6.6E-35 2.3E-39 263.7 15.9 179 130-329 28-208 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-34 1.1E-38 248.5 19.4 163 129-323 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 6.9E-34 2.4E-38 246.1 19.7 162 130-323 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 6.2E-33 2.1E-37 242.0 19.1 164 129-324 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 1.2E-32 4.1E-37 245.3 14.1 181 129-328 3-196 (198)
10 2g4b_A Splicing factor U2AF 65 100.0 8E-32 2.7E-36 234.3 17.0 157 129-324 3-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 1.4E-32 4.7E-37 239.9 12.1 165 126-327 9-175 (175)
12 3tyt_A Heterogeneous nuclear r 100.0 1.6E-31 5.4E-36 237.7 17.5 188 129-323 3-204 (205)
13 3pgw_A U1-A; protein-RNA compl 100.0 1E-30 3.5E-35 246.1 21.9 191 126-324 5-281 (282)
14 3smz_A Protein raver-1, ribonu 100.0 5.7E-31 2E-35 248.1 19.9 172 127-328 92-266 (284)
15 2adc_A Polypyrimidine tract-bi 100.0 1.5E-30 5.1E-35 236.8 19.9 192 125-326 29-228 (229)
16 2ghp_A U4/U6 snRNA-associated 100.0 5.9E-31 2E-35 249.0 17.4 173 128-327 115-292 (292)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-30 5.3E-35 231.6 16.7 187 129-325 2-196 (198)
18 3sde_A Paraspeckle component 1 100.0 6.5E-30 2.2E-34 237.2 17.5 155 127-326 19-179 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 7.2E-30 2.4E-34 241.6 17.8 160 126-327 37-198 (292)
20 3smz_A Protein raver-1, ribonu 100.0 1.3E-29 4.6E-34 238.7 19.4 154 129-327 21-176 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.7E-24 1.3E-28 182.8 14.4 148 159-328 2-152 (158)
22 4f25_A Polyadenylate-binding p 99.9 3.4E-22 1.2E-26 160.5 10.2 108 130-263 5-113 (115)
23 2i2y_A Fusion protein consists 99.8 3.1E-21 1.1E-25 162.9 11.0 137 168-326 9-148 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 3.2E-21 1.1E-25 149.9 9.9 80 246-325 18-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 6E-21 2E-25 146.1 8.4 82 248-329 2-86 (91)
26 3pgw_S U1-70K; protein-RNA com 99.8 8.5E-21 2.9E-25 187.1 10.3 84 245-328 100-184 (437)
27 4fxv_A ELAV-like protein 1; RN 99.8 3.6E-20 1.2E-24 144.0 10.5 80 128-207 17-97 (99)
28 2lkz_A RNA-binding protein 5; 99.8 1.4E-20 4.9E-25 144.4 6.3 80 246-325 8-94 (95)
29 2cqd_A RNA-binding region cont 99.8 3.6E-19 1.2E-23 143.2 14.5 88 243-330 13-100 (116)
30 3s8s_A Histone-lysine N-methyl 99.8 7.9E-20 2.7E-24 144.8 10.2 81 246-326 5-86 (110)
31 2lxi_A RNA-binding protein 10; 99.8 3.4E-20 1.2E-24 141.9 7.3 82 130-211 1-85 (91)
32 2lea_A Serine/arginine-rich sp 99.8 3.3E-20 1.1E-24 153.0 7.7 86 245-330 45-131 (135)
33 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-19 2.3E-23 141.5 14.5 88 243-330 11-99 (115)
34 2lkz_A RNA-binding protein 5; 99.8 6E-20 2.1E-24 140.9 7.9 80 128-207 7-93 (95)
35 1whw_A Hypothetical protein ri 99.8 3.6E-19 1.2E-23 138.9 12.4 85 245-329 6-91 (99)
36 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.2E-19 7.5E-24 152.6 11.8 84 245-328 37-121 (156)
37 3s8s_A Histone-lysine N-methyl 99.8 2.2E-19 7.4E-24 142.3 10.9 80 128-207 4-84 (110)
38 2dnz_A Probable RNA-binding pr 99.8 4.5E-19 1.5E-23 137.3 11.6 83 246-328 4-87 (95)
39 1u6f_A Tcubp1, RNA-binding pro 99.8 9.7E-19 3.3E-23 145.6 14.4 87 242-328 37-124 (139)
40 1x5t_A Splicing factor 3B subu 99.8 3.5E-19 1.2E-23 138.1 10.7 84 246-329 4-89 (96)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-19 9.8E-24 135.9 9.8 82 246-327 5-87 (87)
42 2cq0_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 139.6 11.0 86 244-329 12-98 (103)
43 2dgs_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 137.5 11.8 83 245-328 8-91 (99)
44 3q2s_C Cleavage and polyadenyl 99.8 1.4E-19 4.9E-24 163.0 9.1 79 247-325 68-149 (229)
45 3s7r_A Heterogeneous nuclear r 99.8 5.6E-19 1.9E-23 134.2 10.9 81 126-206 7-87 (87)
46 3md1_A Nuclear and cytoplasmic 99.8 5E-19 1.7E-23 133.3 10.2 80 248-327 2-82 (83)
47 2fy1_A RNA-binding motif prote 99.8 1.1E-18 3.6E-23 140.1 12.6 82 246-328 6-88 (116)
48 1x5s_A Cold-inducible RNA-bind 99.8 5.2E-19 1.8E-23 138.8 10.6 86 244-329 9-95 (102)
49 1x5u_A Splicing factor 3B subu 99.8 1E-18 3.5E-23 137.9 12.2 86 243-328 11-97 (105)
50 1p27_B RNA-binding protein 8A; 99.8 5.7E-19 1.9E-23 139.7 10.7 86 243-328 19-105 (106)
51 2cpz_A CUG triplet repeat RNA- 99.8 6.9E-19 2.4E-23 141.3 11.0 86 243-328 21-107 (115)
52 3ex7_B RNA-binding protein 8A; 99.8 4.8E-19 1.6E-23 144.8 10.3 88 243-330 18-106 (126)
53 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.6E-19 1.6E-23 151.9 10.4 139 177-330 11-156 (165)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.3E-19 1.8E-23 138.8 9.9 86 244-329 9-95 (102)
55 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.7E-23 139.1 9.8 85 244-328 10-95 (103)
56 2do4_A Squamous cell carcinoma 99.8 9.8E-19 3.4E-23 136.7 11.1 85 243-328 13-98 (100)
57 2cph_A RNA binding motif prote 99.8 1.5E-18 5.2E-23 137.5 11.9 86 243-328 11-99 (107)
58 3ns6_A Eukaryotic translation 99.8 2.6E-19 8.8E-24 139.7 7.2 80 247-326 6-93 (100)
59 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.3E-19 2.5E-23 133.0 9.5 79 246-324 6-85 (85)
60 2cpf_A RNA binding motif prote 99.8 8.9E-19 3.1E-23 136.4 10.2 84 246-329 4-91 (98)
61 3p5t_L Cleavage and polyadenyl 99.8 1.6E-19 5.6E-24 138.0 5.9 81 248-328 2-85 (90)
62 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-18 5.2E-23 136.9 11.5 84 245-329 13-100 (105)
63 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 132.7 10.3 80 244-323 8-87 (87)
64 2x1f_A MRNA 3'-END-processing 99.8 9.6E-19 3.3E-23 135.6 10.1 81 247-327 2-83 (96)
65 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-18 3.8E-23 138.3 10.7 85 244-328 22-106 (109)
66 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.1E-23 139.1 11.9 87 125-211 12-98 (116)
67 4f25_A Polyadenylate-binding p 99.8 7.5E-19 2.6E-23 140.8 9.6 79 247-327 5-84 (115)
68 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.7E-23 135.1 10.1 83 243-325 11-94 (95)
69 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.1E-23 137.3 11.0 85 244-328 10-98 (106)
70 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-18 4.1E-23 138.2 10.3 88 124-211 19-106 (109)
71 1oo0_B CG8781-PA, drosophila Y 99.8 1.5E-18 5E-23 138.3 10.8 86 243-328 22-108 (110)
72 2dng_A Eukaryotic translation 99.8 2.4E-18 8.3E-23 135.2 11.8 83 244-328 12-95 (103)
73 2e5h_A Zinc finger CCHC-type a 99.8 1.4E-18 4.7E-23 134.2 10.2 81 244-324 13-94 (94)
74 2dhg_A TRNA selenocysteine ass 99.8 1.4E-18 4.8E-23 136.9 10.4 84 245-329 7-93 (104)
75 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-18 8.1E-23 135.5 11.6 82 245-328 13-96 (104)
76 1sjq_A Polypyrimidine tract-bi 99.8 8.2E-19 2.8E-23 135.7 8.5 81 244-330 13-96 (105)
77 1x4h_A RNA-binding protein 28; 99.8 2.8E-18 9.5E-23 136.9 11.9 87 243-329 11-104 (111)
78 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-18 5.3E-23 131.8 9.9 82 128-209 4-86 (87)
79 3q2s_C Cleavage and polyadenyl 99.8 8.2E-19 2.8E-23 158.1 9.8 79 129-207 67-148 (229)
80 1s79_A Lupus LA protein; RRM, 99.8 1.1E-18 3.6E-23 136.4 9.0 78 246-325 10-88 (103)
81 2hgn_A Heterogeneous nuclear r 99.8 2.6E-19 9E-24 147.2 5.8 79 246-327 45-124 (139)
82 2dgs_A DAZ-associated protein 99.8 4.2E-18 1.4E-22 132.8 12.4 86 126-212 6-92 (99)
83 2jrs_A RNA-binding protein 39; 99.8 1.6E-18 5.4E-23 137.1 10.0 85 243-327 22-107 (108)
84 2d9p_A Polyadenylate-binding p 99.8 2.3E-18 7.7E-23 135.4 10.9 84 244-329 12-96 (103)
85 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-18 9.1E-23 137.9 11.3 88 125-212 20-108 (115)
86 1whw_A Hypothetical protein ri 99.8 3.1E-18 1.1E-22 133.6 11.4 85 127-211 5-90 (99)
87 1s79_A Lupus LA protein; RRM, 99.8 1.5E-18 5E-23 135.6 9.5 81 126-207 7-87 (103)
88 2cq0_A Eukaryotic translation 99.8 2.9E-18 9.8E-23 134.8 11.2 86 126-211 11-97 (103)
89 2dh8_A DAZ-associated protein 99.8 1.5E-18 5.2E-23 136.9 9.6 85 243-328 12-97 (105)
90 2do0_A HnRNP M, heterogeneous 99.8 5.7E-18 2E-22 135.8 13.0 82 245-327 13-95 (114)
91 2cpe_A RNA-binding protein EWS 99.8 1.9E-18 6.4E-23 138.3 10.1 85 244-328 12-105 (113)
92 2la6_A RNA-binding protein FUS 99.8 1.9E-18 6.4E-23 134.8 9.8 82 243-324 9-99 (99)
93 3md1_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 128.6 10.8 79 131-209 2-81 (83)
94 2div_A TRNA selenocysteine ass 99.8 2.1E-18 7.2E-23 134.5 9.8 83 245-327 7-95 (99)
95 2dgo_A Cytotoxic granule-assoc 99.8 6E-18 2.1E-22 135.8 12.7 88 125-212 10-98 (115)
96 2dnz_A Probable RNA-binding pr 99.8 5.1E-18 1.7E-22 131.3 11.7 84 128-211 3-87 (95)
97 2m2b_A RNA-binding protein 10; 99.8 1.1E-18 3.8E-23 143.4 8.4 84 243-327 19-109 (131)
98 3p5t_L Cleavage and polyadenyl 99.8 6.9E-19 2.4E-23 134.5 6.5 80 131-210 2-84 (90)
99 2cqg_A TDP-43, TAR DNA-binding 99.8 7.4E-18 2.5E-22 132.4 12.4 85 244-329 12-96 (103)
100 3ucg_A Polyadenylate-binding p 99.8 3.4E-18 1.2E-22 130.5 10.1 78 247-325 6-84 (89)
101 3ns6_A Eukaryotic translation 99.8 1E-18 3.6E-23 136.2 7.3 80 128-207 4-91 (100)
102 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.1E-18 1.1E-22 129.5 9.8 80 127-206 4-84 (85)
103 2kxn_B Transformer-2 protein h 99.8 1.9E-18 6.4E-23 141.2 8.9 85 243-327 42-127 (129)
104 1x4b_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 137.3 10.5 83 245-328 25-108 (116)
105 1x5u_A Splicing factor 3B subu 99.8 4.5E-18 1.5E-22 134.2 10.9 87 125-211 10-97 (105)
106 2cq3_A RNA-binding protein 9; 99.8 8.5E-18 2.9E-22 132.1 12.3 85 243-329 11-96 (103)
107 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.8E-18 2.7E-22 132.3 12.1 83 244-328 12-95 (103)
108 1x5t_A Splicing factor 3B subu 99.8 4.6E-18 1.6E-22 131.8 10.6 84 128-211 3-88 (96)
109 2dis_A Unnamed protein product 99.8 7.8E-18 2.7E-22 133.8 12.2 84 246-329 7-95 (109)
110 2dnm_A SRP46 splicing factor; 99.8 3.8E-18 1.3E-22 134.1 10.1 85 127-211 10-95 (103)
111 2ywk_A Putative RNA-binding pr 99.8 3.2E-18 1.1E-22 132.4 9.5 81 244-325 13-94 (95)
112 3r27_A HnRNP L, heterogeneous 99.8 3.8E-18 1.3E-22 130.6 9.7 78 243-326 17-97 (100)
113 1x5s_A Cold-inducible RNA-bind 99.8 4.1E-18 1.4E-22 133.7 10.2 87 126-212 8-95 (102)
114 2hvz_A Splicing factor, argini 99.8 3.1E-18 1.1E-22 134.1 9.4 76 131-211 1-77 (101)
115 2cpf_A RNA binding motif prote 99.8 4.6E-18 1.6E-22 132.3 10.4 84 128-211 3-90 (98)
116 2do4_A Squamous cell carcinoma 99.8 6.3E-18 2.1E-22 132.1 11.2 84 126-210 13-97 (100)
117 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-18 5.8E-23 128.3 7.5 76 131-206 1-76 (77)
118 2jrs_A RNA-binding protein 39; 99.7 5E-18 1.7E-22 134.3 10.6 87 123-209 19-106 (108)
119 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.6E-18 1.2E-22 134.0 9.7 86 127-212 9-95 (102)
120 2dgw_A Probable RNA-binding pr 99.7 6.5E-18 2.2E-22 129.5 10.8 81 245-328 8-89 (91)
121 2mss_A Protein (musashi1); RNA 99.7 2.1E-18 7.2E-23 127.0 7.6 74 249-323 1-75 (75)
122 1x4h_A RNA-binding protein 28; 99.7 6.7E-18 2.3E-22 134.7 11.2 87 125-211 10-103 (111)
123 2khc_A Testis-specific RNP-typ 99.7 2.6E-18 8.7E-23 138.7 8.8 82 243-324 36-118 (118)
124 2cqp_A RNA-binding protein 12; 99.7 2.8E-18 9.4E-23 133.6 8.6 82 245-326 13-95 (98)
125 3n9u_C Cleavage and polyadenyl 99.7 3.6E-18 1.2E-22 144.1 10.0 80 246-325 54-136 (156)
126 2dnh_A Bruno-like 5, RNA bindi 99.7 9.3E-18 3.2E-22 132.4 11.7 86 126-212 11-100 (105)
127 1wez_A HnRNP H', FTP-3, hetero 99.7 3.1E-18 1.1E-22 133.7 8.9 80 245-327 13-93 (102)
128 2cqc_A Arginine/serine-rich sp 99.7 5.4E-18 1.8E-22 131.1 10.1 83 125-207 10-93 (95)
129 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-17 4E-22 131.3 12.2 86 126-212 11-96 (103)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-18 4E-23 129.2 6.1 77 248-324 1-77 (77)
131 2ad9_A Polypyrimidine tract-bi 99.7 5.3E-18 1.8E-22 134.7 10.2 82 243-330 27-111 (119)
132 2x1f_A MRNA 3'-END-processing 99.7 5.4E-18 1.8E-22 131.3 9.9 81 130-210 2-83 (96)
133 1p1t_A Cleavage stimulation fa 99.7 2.2E-18 7.7E-23 135.7 7.8 83 246-328 7-90 (104)
134 2e5h_A Zinc finger CCHC-type a 99.7 4.9E-18 1.7E-22 131.1 9.6 81 126-206 12-93 (94)
135 1x4d_A Matrin 3; structural ge 99.7 4.2E-18 1.4E-22 131.9 9.1 77 245-327 13-93 (102)
136 1p27_B RNA-binding protein 8A; 99.7 7.3E-18 2.5E-22 133.2 10.7 83 127-209 20-103 (106)
137 2cph_A RNA binding motif prote 99.7 8.6E-18 2.9E-22 133.1 11.1 88 125-212 10-100 (107)
138 3ulh_A THO complex subunit 4; 99.7 5.7E-18 1.9E-22 134.1 10.1 81 243-324 25-106 (107)
139 4a8x_A RNA-binding protein wit 99.7 4.3E-18 1.5E-22 129.7 9.0 80 247-326 4-85 (88)
140 1wez_A HnRNP H', FTP-3, hetero 99.7 5.3E-18 1.8E-22 132.4 9.7 82 127-210 12-93 (102)
141 2dgv_A HnRNP M, heterogeneous 99.7 6.1E-18 2.1E-22 130.0 9.9 82 245-328 6-88 (92)
142 2jwn_A Embryonic polyadenylate 99.7 7E-18 2.4E-22 137.4 10.6 81 246-327 35-116 (124)
143 2fy1_A RNA-binding motif prote 99.7 1.2E-17 4.1E-22 133.9 11.8 83 128-211 5-88 (116)
144 2div_A TRNA selenocysteine ass 99.7 7.7E-18 2.6E-22 131.3 10.4 83 127-209 6-94 (99)
145 1sjq_A Polypyrimidine tract-bi 99.7 3.1E-18 1.1E-22 132.5 8.0 82 125-212 11-95 (105)
146 2dgx_A KIAA0430 protein; RRM d 99.7 6.4E-18 2.2E-22 130.8 9.8 80 246-328 8-92 (96)
147 2la6_A RNA-binding protein FUS 99.7 9.6E-18 3.3E-22 130.7 10.8 82 125-206 8-98 (99)
148 2cq1_A PTB-like protein L; RRM 99.7 1.1E-17 3.6E-22 129.8 10.8 80 244-329 12-94 (101)
149 2d9p_A Polyadenylate-binding p 99.7 1.3E-17 4.4E-22 131.1 11.5 85 126-212 11-96 (103)
150 2ek1_A RNA-binding protein 12; 99.7 2.1E-18 7.1E-23 133.5 6.8 80 246-325 14-94 (95)
151 2dgp_A Bruno-like 4, RNA bindi 99.7 7.2E-18 2.5E-22 133.3 10.0 86 126-211 9-98 (106)
152 2wbr_A GW182, gawky, LD47780P; 99.7 5E-18 1.7E-22 124.8 8.1 72 247-324 7-79 (89)
153 2cpe_A RNA-binding protein EWS 99.7 9.5E-18 3.2E-22 134.2 10.5 86 126-211 11-105 (113)
154 2dng_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 129.5 12.5 83 127-211 12-95 (103)
155 1x4a_A Splicing factor, argini 99.7 1.6E-17 5.5E-22 131.9 11.6 82 243-327 18-100 (109)
156 1wg5_A Heterogeneous nuclear r 99.7 1.4E-17 4.8E-22 130.9 10.9 83 127-210 12-95 (104)
157 3ucg_A Polyadenylate-binding p 99.7 1.2E-17 4.2E-22 127.4 10.2 78 130-208 6-84 (89)
158 2dgu_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 129.5 12.0 78 245-330 9-87 (103)
159 3n9u_C Cleavage and polyadenyl 99.7 8.9E-18 3E-22 141.7 10.3 79 129-207 54-135 (156)
160 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-18 9.8E-23 133.8 6.7 82 244-327 16-99 (100)
161 2ywk_A Putative RNA-binding pr 99.7 1.1E-17 3.8E-22 129.4 10.0 81 126-207 12-93 (95)
162 1wg5_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 130.6 10.9 81 245-327 13-95 (104)
163 2mss_A Protein (musashi1); RNA 99.7 5.1E-18 1.7E-22 125.0 7.6 75 132-206 1-75 (75)
164 1wi8_A EIF-4B, eukaryotic tran 99.7 1.6E-17 5.6E-22 130.7 11.0 83 127-211 12-96 (104)
165 2cq4_A RNA binding motif prote 99.7 3.9E-18 1.3E-22 136.7 7.5 82 245-327 23-105 (114)
166 2dh8_A DAZ-associated protein 99.7 6.6E-18 2.2E-22 133.2 8.7 86 126-211 12-97 (105)
167 1x4e_A RNA binding motif, sing 99.7 1.2E-18 4.2E-23 131.7 4.3 79 246-324 4-83 (85)
168 1wex_A Hypothetical protein (r 99.7 1.8E-17 6.1E-22 129.4 11.0 79 244-328 12-93 (104)
169 3lqv_A PRE-mRNA branch site pr 99.7 4.1E-18 1.4E-22 136.8 7.5 103 128-273 6-109 (115)
170 2khc_A Testis-specific RNP-typ 99.7 8.7E-18 3E-22 135.6 9.4 82 125-206 35-117 (118)
171 2cpy_A RNA-binding protein 12; 99.7 1.6E-18 5.4E-23 138.8 4.9 81 245-327 13-95 (114)
172 2cpy_A RNA-binding protein 12; 99.7 6.5E-18 2.2E-22 135.2 8.3 82 126-208 11-93 (114)
173 2dhg_A TRNA selenocysteine ass 99.7 1.4E-17 4.6E-22 131.2 10.0 85 127-212 6-93 (104)
174 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-17 4.8E-22 132.5 10.1 85 126-210 22-107 (110)
175 2ki2_A SS-DNA binding protein 99.7 2.2E-18 7.4E-23 131.9 5.0 80 248-328 2-82 (90)
176 3r27_A HnRNP L, heterogeneous 99.7 1.6E-17 5.6E-22 127.1 9.8 77 127-209 18-97 (100)
177 1x4b_A Heterogeneous nuclear r 99.7 1.8E-17 6.1E-22 133.2 10.5 83 130-212 27-109 (116)
178 1iqt_A AUF1, heterogeneous nuc 99.7 3.9E-18 1.3E-22 125.6 6.0 75 132-206 1-75 (75)
179 2cqp_A RNA-binding protein 12; 99.7 9.2E-18 3.2E-22 130.6 8.4 82 127-208 12-94 (98)
180 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.4E-22 142.3 10.7 86 126-211 68-154 (165)
181 1iqt_A AUF1, heterogeneous nuc 99.7 4.4E-18 1.5E-22 125.3 6.1 75 249-323 1-75 (75)
182 2dgw_A Probable RNA-binding pr 99.7 3.4E-17 1.2E-21 125.4 11.3 81 127-210 7-88 (91)
183 2do0_A HnRNP M, heterogeneous 99.7 4.2E-17 1.4E-21 130.7 12.3 83 126-209 11-94 (114)
184 2kxn_B Transformer-2 protein h 99.7 9.5E-18 3.3E-22 137.0 8.6 85 125-209 41-126 (129)
185 1u6f_A Tcubp1, RNA-binding pro 99.7 2.5E-17 8.6E-22 137.0 11.3 88 125-212 37-125 (139)
186 1x4c_A Splicing factor, argini 99.7 4.5E-17 1.6E-21 128.9 12.1 77 245-328 13-95 (108)
187 2kt5_A RNA and export factor-b 99.7 4.1E-17 1.4E-21 132.8 12.0 84 243-327 31-115 (124)
188 2ek1_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 130.3 7.3 80 128-207 13-93 (95)
189 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.7E-22 131.1 9.0 81 129-209 7-88 (104)
190 1x4e_A RNA binding motif, sing 99.7 3.8E-18 1.3E-22 129.0 5.4 79 128-206 3-82 (85)
191 3ulh_A THO complex subunit 4; 99.7 2.5E-17 8.7E-22 130.3 10.3 81 126-207 25-106 (107)
192 2dis_A Unnamed protein product 99.7 2.8E-17 9.5E-22 130.6 10.6 85 127-211 5-94 (109)
193 2hvz_A Splicing factor, argini 99.7 2.9E-17 9.8E-22 128.5 10.5 76 248-328 1-77 (101)
194 2fc9_A NCL protein; structure 99.7 2.7E-17 9.2E-22 128.7 10.3 82 243-328 11-93 (101)
195 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.2E-17 1.1E-21 136.6 11.4 81 243-323 59-140 (140)
196 2hgl_A HNRPF protein, heteroge 99.7 1.6E-17 5.4E-22 136.1 9.3 80 126-207 40-123 (136)
197 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 131.4 8.2 76 247-325 16-92 (109)
198 2hgm_A HNRPF protein, heteroge 99.7 1.2E-17 4.2E-22 134.5 8.3 79 127-207 39-119 (126)
199 2cq3_A RNA-binding protein 9; 99.7 5.7E-17 2E-21 127.3 12.0 86 125-212 10-96 (103)
200 2hgl_A HNRPF protein, heteroge 99.7 1.1E-17 3.6E-22 137.2 8.0 79 245-325 42-124 (136)
201 2cpi_A CCR4-NOT transcription 99.7 1.7E-17 5.7E-22 132.1 8.7 83 245-327 13-102 (111)
202 2m2b_A RNA-binding protein 10; 99.7 6.7E-18 2.3E-22 138.7 6.6 82 127-209 20-108 (131)
203 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.2E-17 1.4E-21 128.1 10.9 84 126-211 11-95 (103)
204 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.4E-22 122.6 7.3 73 129-207 6-79 (89)
205 2dnq_A RNA-binding protein 4B; 99.7 4.6E-17 1.6E-21 124.4 10.8 76 245-328 6-82 (90)
206 2db1_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 132.8 9.3 80 127-207 14-96 (118)
207 3ex7_B RNA-binding protein 8A; 99.7 2.4E-17 8.3E-22 134.6 9.7 86 126-211 18-104 (126)
208 2nlw_A Eukaryotic translation 99.7 2.3E-17 7.8E-22 129.9 9.2 80 246-327 14-101 (105)
209 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.4E-22 134.2 7.9 80 245-326 15-98 (118)
210 2ad9_A Polypyrimidine tract-bi 99.7 2.9E-17 9.8E-22 130.5 9.7 80 127-212 28-110 (119)
211 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.4E-17 1.8E-21 137.8 12.1 85 126-210 35-120 (156)
212 2cpx_A Hypothetical protein FL 99.7 1.4E-17 5E-22 133.6 8.1 85 244-328 22-107 (115)
213 4a8x_A RNA-binding protein wit 99.7 2.6E-17 8.8E-22 125.3 9.0 80 129-208 3-84 (88)
214 1x4g_A Nucleolysin TIAR; struc 99.7 4E-17 1.4E-21 129.6 10.5 82 243-330 21-103 (109)
215 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-17 4.4E-22 134.1 7.5 79 128-207 21-103 (123)
216 2jvr_A Nucleolar protein 3; RN 99.7 2E-17 7E-22 130.4 8.5 78 246-327 27-106 (111)
217 2dgv_A HnRNP M, heterogeneous 99.7 4.5E-17 1.6E-21 125.0 10.3 81 127-209 5-86 (92)
218 1why_A Hypothetical protein ri 99.7 3.4E-17 1.1E-21 127.1 9.6 78 245-328 15-95 (97)
219 1fj7_A Nucleolin RBD1, protein 99.7 5.3E-18 1.8E-22 132.7 5.0 81 246-328 16-97 (101)
220 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.7E-22 129.3 9.1 76 130-207 16-91 (109)
221 2cq1_A PTB-like protein L; RRM 99.7 4.1E-17 1.4E-21 126.5 9.9 81 126-212 11-94 (101)
222 2fc8_A NCL protein; structure 99.7 3.9E-17 1.3E-21 128.0 9.8 82 244-328 12-94 (102)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-17 6.7E-22 129.1 7.9 81 127-209 16-98 (100)
224 1wel_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 135.8 7.0 82 244-326 22-104 (124)
225 1x4f_A Matrin 3; structural ge 99.7 2.2E-17 7.5E-22 129.6 8.1 78 244-327 22-103 (112)
226 2a3j_A U1 small nuclear ribonu 99.7 4E-17 1.4E-21 132.2 9.9 81 244-327 26-111 (127)
227 2cq4_A RNA binding motif prote 99.7 1.7E-17 5.9E-22 132.9 7.6 79 129-208 24-103 (114)
228 2err_A Ataxin-2-binding protei 99.7 2.3E-17 8E-22 130.7 8.3 82 243-326 25-107 (109)
229 1x5o_A RNA binding motif, sing 99.7 4.4E-17 1.5E-21 130.5 10.0 81 244-325 22-111 (114)
230 1x4d_A Matrin 3; structural ge 99.7 2.3E-17 7.9E-22 127.7 7.8 78 127-210 12-93 (102)
231 2hgm_A HNRPF protein, heteroge 99.7 2E-17 6.8E-22 133.2 7.5 79 245-325 40-120 (126)
232 2ki2_A SS-DNA binding protein 99.7 9.9E-18 3.4E-22 128.2 5.4 79 131-210 2-81 (90)
233 2dgx_A KIAA0430 protein; RRM d 99.7 4.6E-17 1.6E-21 125.9 9.2 80 128-210 7-91 (96)
234 2krb_A Eukaryotic translation 99.7 1.8E-17 6.3E-22 123.9 6.6 71 248-320 2-80 (81)
235 1wex_A Hypothetical protein (r 99.7 5.4E-17 1.9E-21 126.6 9.5 80 127-212 12-94 (104)
236 2kt5_A RNA and export factor-b 99.7 6.9E-17 2.3E-21 131.4 10.4 85 127-212 32-117 (124)
237 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4.2E-23 140.0 0.0 82 246-327 6-96 (116)
238 2ytc_A PRE-mRNA-splicing facto 99.7 7.8E-17 2.7E-21 121.7 10.0 75 244-324 9-85 (85)
239 2lea_A Serine/arginine-rich sp 99.7 3E-17 1E-21 135.2 8.2 85 126-210 43-128 (135)
240 2lmi_A GRSF-1, G-rich sequence 99.7 2.7E-17 9.3E-22 129.9 7.3 81 126-207 7-90 (107)
241 2nlw_A Eukaryotic translation 99.7 5.8E-17 2E-21 127.5 9.1 82 126-209 11-100 (105)
242 2kvi_A Nuclear polyadenylated 99.7 3.9E-17 1.3E-21 126.3 7.9 79 244-330 7-87 (96)
243 1wel_A RNA-binding protein 12; 99.7 2.9E-17 9.8E-22 133.6 7.4 81 127-208 22-103 (124)
244 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7E-17 2.4E-21 134.5 10.0 82 125-206 58-140 (140)
245 1x4f_A Matrin 3; structural ge 99.7 4E-17 1.4E-21 128.2 7.9 79 126-210 21-103 (112)
246 1x4a_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 127.1 10.6 84 125-211 17-101 (109)
247 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.9E-21 122.2 10.9 77 244-328 7-84 (92)
248 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-17 5.7E-22 131.1 5.8 80 245-326 9-92 (107)
249 2jwn_A Embryonic polyadenylate 99.7 1.2E-16 4.1E-21 130.1 10.5 79 130-209 36-115 (124)
250 2cpj_A Non-POU domain-containi 99.7 1E-16 3.5E-21 124.8 9.6 78 244-327 12-90 (99)
251 2cpd_A Apobec-1 stimulating pr 99.7 2.2E-16 7.6E-21 122.9 11.5 77 244-328 12-91 (99)
252 2hgn_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 135.6 6.0 82 127-210 43-124 (139)
253 2dha_A FLJ20171 protein; RRM d 99.7 3E-17 1E-21 132.0 6.6 79 246-325 22-104 (123)
254 2err_A Ataxin-2-binding protei 99.7 9.3E-17 3.2E-21 127.3 9.3 84 124-209 23-107 (109)
255 2krb_A Eukaryotic translation 99.7 4.4E-17 1.5E-21 121.8 7.0 72 130-203 1-80 (81)
256 2kn4_A Immunoglobulin G-bindin 99.7 1.1E-16 3.7E-21 136.3 10.3 84 126-209 66-150 (158)
257 1x5o_A RNA binding motif, sing 99.7 1.5E-16 5E-21 127.4 10.4 81 126-207 21-110 (114)
258 2cpi_A CCR4-NOT transcription 99.7 5.6E-17 1.9E-21 129.0 7.8 83 128-210 13-102 (111)
259 1whx_A Hypothetical protein ri 99.7 9.6E-17 3.3E-21 127.5 9.1 76 246-327 9-85 (111)
260 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-16 4.7E-21 123.6 9.7 78 245-327 17-95 (97)
261 2xs2_A Deleted in azoospermia- 99.7 4.8E-17 1.6E-21 127.5 7.0 81 246-328 8-88 (102)
262 2xs2_A Deleted in azoospermia- 99.7 6.1E-17 2.1E-21 126.9 7.3 81 128-210 7-87 (102)
263 2dnp_A RNA-binding protein 14; 99.7 2.2E-16 7.5E-21 120.6 10.1 75 245-327 7-82 (90)
264 2fc9_A NCL protein; structure 99.7 2.1E-16 7.2E-21 123.5 10.1 82 126-211 11-93 (101)
265 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-16 4.3E-21 126.0 8.6 78 243-328 27-105 (108)
266 2j8a_A Histone-lysine N-methyl 99.7 8.2E-17 2.8E-21 126.4 7.4 78 248-325 3-95 (136)
267 1wf1_A RNA-binding protein RAL 99.7 1.6E-16 5.4E-21 126.3 9.2 74 246-327 26-101 (110)
268 2la4_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 126.1 7.1 75 245-325 25-100 (101)
269 2xnq_A Nuclear polyadenylated 99.7 2.6E-16 8.8E-21 121.8 9.9 77 243-327 18-96 (97)
270 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-16 3.7E-21 124.0 7.8 79 245-328 14-93 (96)
271 2a3j_A U1 small nuclear ribonu 99.7 2E-16 6.9E-21 128.0 9.6 80 127-209 26-110 (127)
272 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-17 8E-22 129.0 3.9 81 127-209 14-95 (101)
273 1nu4_A U1A RNA binding domain; 99.7 8.6E-17 2.9E-21 124.8 7.0 80 245-327 6-90 (97)
274 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-16 7.1E-21 126.8 9.2 79 246-327 7-86 (115)
275 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-16 4.1E-21 126.0 7.6 79 127-209 25-105 (111)
276 2dnq_A RNA-binding protein 4B; 99.7 4.9E-16 1.7E-20 118.6 10.7 78 127-212 5-83 (90)
277 2f3j_A RNA and export factor b 99.7 2E-16 6.8E-21 136.5 9.4 83 243-326 84-167 (177)
278 2fc8_A NCL protein; structure 99.7 3.3E-16 1.1E-20 122.7 9.8 84 125-211 10-94 (102)
279 2cpx_A Hypothetical protein FL 99.7 8.6E-17 2.9E-21 129.1 6.6 85 127-211 22-107 (115)
280 4f02_A Polyadenylate-binding p 99.7 2.9E-16 1E-20 140.6 10.3 81 246-326 14-95 (213)
281 2cq2_A Hypothetical protein LO 99.7 3.1E-16 1.1E-20 123.1 8.9 79 244-328 22-108 (114)
282 1x4c_A Splicing factor, argini 99.7 6.4E-16 2.2E-20 122.2 10.9 77 128-211 13-95 (108)
283 1x4g_A Nucleolysin TIAR; struc 99.6 4.5E-16 1.5E-20 123.5 9.8 80 127-212 22-102 (109)
284 2lcw_A RNA-binding protein FUS 99.5 9.4E-18 3.2E-22 134.9 0.0 85 127-211 4-97 (116)
285 2j8a_A Histone-lysine N-methyl 99.6 2.3E-16 8E-21 123.8 7.6 77 131-207 3-94 (136)
286 2e5g_A U6 snRNA-specific termi 99.6 7.3E-16 2.5E-20 118.7 10.4 75 247-327 8-83 (94)
287 1why_A Hypothetical protein ri 99.6 5.2E-16 1.8E-20 120.3 9.6 79 126-210 13-94 (97)
288 3d2w_A TAR DNA-binding protein 99.6 3.7E-16 1.2E-20 118.7 8.5 78 244-327 8-85 (89)
289 1x5p_A Negative elongation fac 99.6 1.4E-15 4.6E-20 117.9 11.6 76 245-328 13-89 (97)
290 2ytc_A PRE-mRNA-splicing facto 99.6 7.5E-16 2.6E-20 116.3 9.8 75 126-206 8-84 (85)
291 2e5j_A Methenyltetrahydrofolat 99.6 5.2E-16 1.8E-20 120.3 9.1 79 126-209 15-94 (97)
292 2la4_A Nuclear and cytoplasmic 99.6 3.4E-16 1.2E-20 122.4 7.8 76 126-207 23-99 (101)
293 2cpj_A Non-POU domain-containi 99.6 6.3E-16 2.2E-20 120.3 9.3 79 126-210 11-90 (99)
294 3egn_A RNA-binding protein 40; 99.6 1.1E-16 3.6E-21 133.8 5.1 84 244-327 42-131 (143)
295 2dnl_A Cytoplasmic polyadenyla 99.6 3.6E-16 1.2E-20 125.0 7.7 77 128-206 6-85 (114)
296 2cqh_A IGF-II mRNA-binding pro 99.6 5.3E-16 1.8E-20 119.3 8.3 76 246-328 7-85 (93)
297 1whx_A Hypothetical protein ri 99.6 4.1E-16 1.4E-20 123.8 7.8 77 129-211 9-86 (111)
298 1fjc_A Nucleolin RBD2, protein 99.6 5.2E-16 1.8E-20 120.1 8.1 80 126-210 12-92 (96)
299 2jvo_A Nucleolar protein 3; nu 99.6 8.4E-16 2.9E-20 121.3 9.2 79 124-210 25-104 (108)
300 3pgw_S U1-70K; protein-RNA com 99.6 1.3E-15 4.4E-20 150.2 12.6 83 128-210 100-183 (437)
301 1nu4_A U1A RNA binding domain; 99.6 3.3E-16 1.1E-20 121.5 6.7 81 127-210 5-90 (97)
302 2f3j_A RNA and export factor b 99.6 6.3E-16 2.2E-20 133.3 9.0 80 128-208 86-166 (177)
303 2xnq_A Nuclear polyadenylated 99.6 1.5E-15 5E-20 117.5 10.2 77 125-209 17-95 (97)
304 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-15 3.8E-20 127.5 10.1 77 247-327 46-125 (164)
305 2e44_A Insulin-like growth fac 99.6 7.4E-16 2.5E-20 119.2 8.5 77 246-326 14-92 (96)
306 3beg_B Splicing factor, argini 99.6 6.1E-16 2.1E-20 123.7 8.1 73 246-325 15-93 (115)
307 3d2w_A TAR DNA-binding protein 99.6 7.9E-16 2.7E-20 116.8 8.1 77 127-209 8-84 (89)
308 2dgt_A RNA-binding protein 30; 99.6 1.7E-15 5.8E-20 116.1 10.0 78 126-211 6-84 (92)
309 2diu_A KIAA0430 protein; struc 99.6 1.2E-15 4E-20 113.2 8.5 70 249-328 11-86 (96)
310 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.6E-20 130.9 10.2 81 247-327 3-84 (168)
311 1wf0_A TDP-43, TAR DNA-binding 99.6 5.7E-16 2E-20 117.7 6.9 77 246-328 4-80 (88)
312 2dgu_A Heterogeneous nuclear r 99.6 1.5E-15 5.3E-20 119.0 9.5 78 127-212 8-86 (103)
313 2dnp_A RNA-binding protein 14; 99.6 1.5E-15 5.2E-20 115.9 9.2 77 126-210 5-82 (90)
314 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.5E-20 122.4 9.2 76 247-327 28-107 (130)
315 1fxl_A Paraneoplastic encephal 99.6 1.5E-15 5.1E-20 130.4 10.3 81 247-327 2-83 (167)
316 2dnl_A Cytoplasmic polyadenyla 99.6 7.6E-16 2.6E-20 123.1 7.8 77 246-324 7-86 (114)
317 1l3k_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 133.6 10.9 84 244-327 10-93 (196)
318 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7.1E-20 117.9 9.9 81 245-325 6-93 (105)
319 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.1E-20 132.5 10.6 79 130-209 109-187 (193)
320 2e5g_A U6 snRNA-specific termi 99.6 2.8E-15 9.4E-20 115.4 10.4 77 128-210 6-83 (94)
321 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 3.9E-20 118.0 8.2 77 127-211 7-85 (96)
322 1wg1_A KIAA1579 protein, homol 99.6 7E-16 2.4E-20 117.1 6.8 73 247-326 5-78 (88)
323 2cpd_A Apobec-1 stimulating pr 99.6 4E-15 1.4E-19 115.7 10.6 77 127-211 12-91 (99)
324 1wf1_A RNA-binding protein RAL 99.6 2.8E-15 9.7E-20 119.0 9.8 75 127-209 24-100 (110)
325 1wg1_A KIAA1579 protein, homol 99.6 2.4E-15 8.2E-20 114.2 8.9 76 128-210 3-79 (88)
326 2cqh_A IGF-II mRNA-binding pro 99.6 1.8E-15 6E-20 116.3 8.2 78 127-211 5-85 (93)
327 2voo_A Lupus LA protein; RNA-b 99.6 2.7E-15 9.1E-20 131.4 10.3 80 246-326 108-187 (193)
328 2e5i_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 118.7 10.6 74 248-327 26-103 (124)
329 2i2y_A Fusion protein consists 99.6 2.1E-15 7.2E-20 127.0 9.0 80 125-209 68-148 (150)
330 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-15 4.7E-20 115.5 7.0 77 129-211 4-80 (88)
331 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.3E-20 118.3 8.1 81 126-212 21-109 (114)
332 2hzc_A Splicing factor U2AF 65 99.6 3.1E-15 1.1E-19 113.4 8.6 70 246-322 5-86 (87)
333 3egn_A RNA-binding protein 40; 99.6 8.1E-16 2.8E-20 128.4 5.3 83 127-209 42-130 (143)
334 2qfj_A FBP-interacting repress 99.6 7.5E-15 2.6E-19 131.8 11.7 85 128-212 123-208 (216)
335 3md3_A Nuclear and cytoplasmic 99.6 7.5E-15 2.6E-19 125.9 10.9 83 125-207 82-165 (166)
336 1x5p_A Negative elongation fac 99.6 1.5E-14 5.3E-19 111.9 11.3 77 127-211 12-89 (97)
337 2g4b_A Splicing factor U2AF 65 99.6 6.7E-15 2.3E-19 127.0 10.1 80 128-207 92-172 (172)
338 2bz2_A Negative elongation fac 99.6 4.9E-15 1.7E-19 119.3 8.2 76 245-328 37-113 (121)
339 2cjk_A Nuclear polyadenylated 99.6 3.9E-15 1.3E-19 127.9 8.0 80 130-209 87-166 (167)
340 2e44_A Insulin-like growth fac 99.6 5.9E-15 2E-19 114.1 8.2 78 128-209 13-92 (96)
341 3tyt_A Heterogeneous nuclear r 99.6 5.8E-15 2E-19 130.7 9.2 76 246-326 3-80 (205)
342 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-14 4.4E-19 121.1 10.2 77 130-210 46-125 (164)
343 3beg_B Splicing factor, argini 99.6 4.6E-15 1.6E-19 118.6 7.2 72 129-207 15-92 (115)
344 2diu_A KIAA0430 protein; struc 99.6 1.3E-14 4.6E-19 107.5 9.1 73 130-212 9-87 (96)
345 3u1l_A PRE-mRNA-splicing facto 99.6 4.8E-15 1.6E-19 132.4 7.9 81 244-330 131-233 (240)
346 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6.2E-19 112.5 10.2 80 128-207 6-92 (105)
347 2hzc_A Splicing factor U2AF 65 99.6 8.5E-15 2.9E-19 111.0 8.0 71 128-205 4-86 (87)
348 3pgw_A U1-A; protein-RNA compl 99.6 6E-14 2.1E-18 131.4 15.3 81 244-327 6-91 (282)
349 2yh0_A Splicing factor U2AF 65 99.5 1.8E-14 6E-19 127.4 10.7 83 128-210 112-195 (198)
350 3zzy_A Polypyrimidine tract-bi 99.5 2.6E-14 8.7E-19 114.8 10.5 75 131-210 29-107 (130)
351 3nmr_A Cugbp ELAV-like family 99.5 3.6E-14 1.2E-18 122.7 10.4 79 127-206 92-174 (175)
352 3v4m_A Splicing factor U2AF 65 99.5 2.9E-14 1E-18 111.4 8.3 80 246-325 4-96 (105)
353 2bz2_A Negative elongation fac 99.5 4.3E-14 1.5E-18 113.8 9.4 77 127-211 36-113 (121)
354 2dit_A HIV TAT specific factor 99.5 1E-13 3.5E-18 110.2 11.3 81 244-328 12-104 (112)
355 2e5i_A Heterogeneous nuclear r 99.5 9.8E-14 3.3E-18 111.1 10.1 73 132-210 27-103 (124)
356 3u1l_A PRE-mRNA-splicing facto 99.5 4.6E-14 1.6E-18 126.1 8.1 80 126-211 130-231 (240)
357 3ue2_A Poly(U)-binding-splicin 99.5 6.4E-14 2.2E-18 111.5 7.9 79 246-324 19-107 (118)
358 2adc_A Polypyrimidine tract-bi 99.5 9.2E-14 3.2E-18 125.7 8.6 78 244-326 31-110 (229)
359 1fje_B Nucleolin RBD12, protei 99.4 1.6E-13 5.6E-18 118.6 8.8 78 127-209 96-174 (175)
360 2dit_A HIV TAT specific factor 99.4 8.6E-13 2.9E-17 104.8 11.1 81 126-210 11-103 (112)
361 1jmt_A Splicing factor U2AF 35 99.4 4.8E-14 1.6E-18 110.0 3.7 71 252-323 20-103 (104)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.6E-12 5.6E-17 99.9 11.9 76 247-328 10-92 (100)
363 1qm9_A Polypyrimidine tract-bi 99.4 1.4E-13 4.8E-18 121.7 6.5 76 247-327 3-80 (198)
364 3sde_A Paraspeckle component 1 99.4 3.9E-13 1.3E-17 124.2 8.9 76 244-325 19-95 (261)
365 3v4m_A Splicing factor U2AF 65 99.4 5.3E-13 1.8E-17 104.2 8.1 79 129-207 4-95 (105)
366 3ue2_A Poly(U)-binding-splicin 99.4 8.1E-13 2.8E-17 105.1 8.4 79 129-207 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.1E-12 1.4E-16 97.7 11.9 77 129-211 9-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.2E-18 106.4 4.1 71 135-206 20-103 (104)
369 3s6e_A RNA-binding protein 39; 99.3 3.4E-12 1.2E-16 100.7 8.2 77 245-325 5-92 (114)
370 3tht_A Alkylated DNA repair pr 99.3 7.6E-12 2.6E-16 117.9 8.2 75 244-324 15-97 (345)
371 3tht_A Alkylated DNA repair pr 99.2 1.8E-11 6.1E-16 115.4 9.0 77 124-206 12-96 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 1.2E-10 4.2E-15 91.7 8.2 77 242-324 13-94 (121)
373 3s6e_A RNA-binding protein 39; 99.1 1.2E-10 4.1E-15 91.8 8.1 75 129-207 6-91 (114)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 1.7E-10 5.8E-15 84.8 7.9 74 245-327 5-87 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 4.3E-10 1.5E-14 88.6 8.1 75 127-207 15-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 7.5E-10 2.6E-14 81.7 5.0 75 242-325 10-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.9 3.1E-09 1.1E-13 78.1 8.0 72 128-208 5-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.8 9.9E-09 3.4E-13 92.0 8.9 67 258-324 140-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 1.1E-08 3.8E-13 75.4 5.4 72 127-207 12-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.6 7E-08 2.4E-12 86.4 7.8 77 131-207 125-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 3.4E-07 1.2E-11 68.8 7.5 71 247-323 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.5 1.7E-06 5.9E-11 64.6 10.5 71 129-207 7-82 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.0 2.2E-05 7.5E-10 59.0 7.8 73 128-206 19-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 7.5E-05 2.6E-09 55.8 10.5 75 246-328 7-86 (104)
385 1wey_A Calcipressin 1; structu 97.8 3.2E-05 1.1E-09 58.1 6.2 73 247-325 5-83 (104)
386 1whv_A Poly(A)-specific ribonu 97.6 0.00015 5.2E-09 53.3 6.3 53 132-192 17-69 (100)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00025 8.6E-09 52.4 7.3 66 248-313 2-70 (91)
388 3ctr_A Poly(A)-specific ribonu 97.4 0.00019 6.4E-09 53.1 4.9 53 132-193 8-60 (101)
389 1whv_A Poly(A)-specific ribonu 97.2 0.00066 2.3E-08 50.0 5.9 55 247-310 16-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.1 0.0029 9.8E-08 49.0 8.9 73 246-325 23-96 (119)
391 1uw4_A UPF3X; nonsense mediate 97.1 0.0016 5.5E-08 48.1 6.8 65 131-195 2-68 (91)
392 3ctr_A Poly(A)-specific ribonu 96.9 0.0008 2.7E-08 49.7 4.1 54 248-310 7-60 (101)
393 2l08_A Regulator of nonsense t 96.9 0.0019 6.6E-08 47.9 5.7 66 248-313 10-78 (97)
394 1wey_A Calcipressin 1; structu 96.8 0.0083 2.8E-07 45.0 8.6 72 130-207 5-82 (104)
395 1wwh_A Nucleoporin 35, nucleop 96.6 0.013 4.4E-07 45.3 8.8 71 129-206 23-94 (119)
396 3p3d_A Nucleoporin 53; structu 96.1 0.013 4.3E-07 46.0 6.3 77 248-325 8-98 (132)
397 2l08_A Regulator of nonsense t 95.8 0.01 3.5E-07 44.0 4.3 66 130-195 9-76 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.7 0.0057 1.9E-07 59.6 3.6 57 130-192 53-109 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.006 2.1E-07 59.4 3.0 57 247-309 53-109 (464)
400 3p3d_A Nucleoporin 53; structu 94.8 0.047 1.6E-06 42.8 5.6 76 131-207 8-97 (132)
401 3d45_A Poly(A)-specific ribonu 88.2 0.8 2.7E-05 45.5 6.7 54 131-193 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.2 1.1 3.7E-05 44.5 7.0 55 247-310 440-494 (507)
403 4eyt_A Telomerase associated p 67.4 25 0.00087 24.9 6.9 55 247-309 12-66 (129)
404 3tj1_A RNA polymerase I-specif 52.0 5.1 0.00018 40.6 1.6 8 146-153 385-392 (649)
405 4e8u_A Putative uncharacterize 51.9 30 0.001 28.4 5.9 49 132-183 14-73 (172)
406 3j21_T 50S ribosomal protein L 42.2 48 0.0016 23.7 5.0 57 132-191 24-82 (86)
407 3fry_A Probable copper-exporti 41.6 64 0.0022 21.4 5.7 56 248-310 7-62 (73)
408 4eyt_A Telomerase associated p 37.0 1.1E+02 0.0038 21.7 7.3 56 129-192 11-66 (129)
409 3l9o_A ATP-dependent RNA helic 34.2 8.8 0.0003 42.1 0.1 21 173-193 228-248 (1108)
410 3l9o_A ATP-dependent RNA helic 30.6 22 0.00075 39.0 2.5 18 292-309 444-461 (1108)
411 4e8u_A Putative uncharacterize 30.2 73 0.0025 26.1 4.9 52 246-300 11-73 (172)
412 3ts2_A Protein LIN-28 homolog 29.7 9.3 0.00032 30.7 -0.5 28 262-297 2-29 (148)
413 3lpe_A Putative transcription 29.3 1.1E+02 0.0039 21.9 5.4 24 171-194 49-72 (92)
414 3dxs_X Copper-transporting ATP 24.4 1.5E+02 0.0052 19.3 5.9 56 249-310 5-64 (74)
415 1igq_A Transcriptional repress 24.3 67 0.0023 21.2 2.9 23 158-181 20-42 (62)
416 3mfb_A Uncharacterized protein 23.7 99 0.0034 24.9 4.5 36 259-294 3-41 (157)
417 2cu1_A Mitogen-activated prote 22.0 84 0.0029 23.0 3.4 63 137-207 23-86 (103)
418 3uzu_A Ribosomal RNA small sub 20.8 36 0.0012 30.6 1.6 34 248-281 115-148 (279)
419 3fut_A Dimethyladenosine trans 20.6 66 0.0022 28.7 3.3 32 248-280 111-142 (271)
420 2i9x_A Putative septation prot 20.4 1E+02 0.0035 22.0 3.6 26 273-298 5-30 (87)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.1e-36 Score=266.75 Aligned_cols=179 Identities=26% Similarity=0.495 Sum_probs=153.0
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.....++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+..+..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999977889999999999
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCC
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~ 285 (474)
+........ .......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+
T Consensus 89 ~~~~~~~~~--------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 89 AVSREDSQR--------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp CCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred ccCcccccc--------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC
Confidence 864432211 112234579999999999999999999999999999999999889
Q ss_pred CCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecccCCCCC
Q 011975 286 GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKPG 330 (474)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~~~~~~ 330 (474)
++++|||||+|.+.++|.+||..++..|+|+.|.|.|+.++....
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred CCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 999999999999999999999985599999999999998776543
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.3e-36 Score=273.63 Aligned_cols=166 Identities=20% Similarity=0.320 Sum_probs=149.0
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~~ 207 (474)
..++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.++. .+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999885 5799999999875
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
..... .....++|||+|||+.+|+++|+++|++||.|..|+|++|. +.
T Consensus 94 ~~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~ 141 (213)
T 4f02_A 94 RDPSL------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 141 (213)
T ss_dssp CCTHH------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TE
T ss_pred ccccc------------------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CC
Confidence 32211 11123589999999999999999999999999999999984 45
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
++|||||+|.+.++|.+||..|| ..|+|++|.|.|+.++
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 79999999999999999999999 9999999999999764
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=249.53 Aligned_cols=163 Identities=22% Similarity=0.364 Sum_probs=148.9
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
|+|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|++.++ ..+.++.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 68899999999999999999998887 5589999999998644
Q ss_pred CCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcc
Q 011975 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (474)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~k 289 (474)
... .....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++
T Consensus 80 ~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 80 QQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp CCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 321 12245699999999999999999999999999999999998899999
Q ss_pred cEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
|||||+|.+.++|.+|+..|+ ..|.|+.|.|.||.
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999 99999999999985
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.9e-35 Score=254.86 Aligned_cols=164 Identities=29% Similarity=0.580 Sum_probs=149.2
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+. ...+.|+.|.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999996 4678999999888742
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
.. .....++|||+|||+.+|+++|+++|++||.|..|+|++++.++++
T Consensus 81 ~~--------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 81 RD--------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp HH--------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred hh--------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 11 1123458999999999999999999999999999999999889999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
+|||||+|.+.++|.+|+. ++ ..|.|+.|.|.|+.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999998 67 8999999999999764
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.6e-35 Score=263.70 Aligned_cols=179 Identities=22% Similarity=0.427 Sum_probs=152.6
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.++.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5799999999999999999999999999999999999899999999999999999999999877 568999999987653
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
....... ...........++|||+|||+.+|+++|+++|++||.|..|+|++++.++++
T Consensus 108 ~~~~~~~---------------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 108 IGQAQPI---------------------IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp CGGGHHH---------------------HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred ccccchh---------------------hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 3211000 0000112234579999999999999999999999999999999999889999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCC
Q 011975 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~ 329 (474)
+|||||+|.+.++|.+||..|+ ..|.|+.|.|.|+...+.+
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999999999 9999999999999876543
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-34 Score=248.51 Aligned_cols=163 Identities=25% Similarity=0.422 Sum_probs=150.1
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999999899999999999999999999999877 55899999999986
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
.... ....++|||+|||..+|+++|+++|++||.|..|+|++++.+++
T Consensus 82 ~~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 82 PGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp CCSS--------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC
T ss_pred CCcc--------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC
Confidence 4322 12346999999999999999999999999999999999988999
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEec
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a 323 (474)
++|||||+|.+.++|.+|+..|+ ..|.| ++|+|.||
T Consensus 130 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 130 PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999 88988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.9e-34 Score=246.08 Aligned_cols=162 Identities=25% Similarity=0.425 Sum_probs=148.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
+++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.++.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999899999999999999999999999877 558999999999863
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCc
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~ 288 (474)
... ....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.+
T Consensus 82 ~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 82 SSA--------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CCG--------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred Ccc--------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 321 123468999999999999999999999999999999999889999
Q ss_pred ccEEEEEEcCHHHHHHHHHcCC-CccCCeE--EEEEec
Q 011975 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHI--LNCQRA 323 (474)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~~~g~~--l~v~~a 323 (474)
+|||||+|.+.++|.+|+..|| ..|.|+. |.|.||
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999999 8999965 888875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.2e-33 Score=242.05 Aligned_cols=164 Identities=21% Similarity=0.304 Sum_probs=143.5
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCC--CcceEEEEEeccHHHHHHHHHccCCc-cC---CeeeE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQKK-IG---NRMTA 202 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g--~skG~afV~F~~~~~A~~Ai~~~~~~-~~---gr~~~ 202 (474)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.++.. +. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999776 89999999999999999999988853 43 56777
Q ss_pred EEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeec
Q 011975 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (474)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d 282 (474)
+.++..... .....++|||+|||+.+|+++|+++|++||.|..|+|+++
T Consensus 82 ~~~~~~~~~-------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 82 MKPADSEKN-------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp EEECGGGCC-------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred Ecccccccc-------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 776643221 1223468999999999999999999999999999999998
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC---CeEEEEEecc
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNCQRAI 324 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~---g~~l~v~~a~ 324 (474)
+ +++++|||||+|.+.++|.+|+..|| ..+. +++|.|.||.
T Consensus 131 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 131 P-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp T-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred C-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 5 68999999999999999999999999 5555 4999999973
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.2e-32 Score=245.35 Aligned_cols=181 Identities=15% Similarity=0.249 Sum_probs=145.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCC-----------CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Ccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-----------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-----------~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~ 196 (474)
.+++|||+|||+++|+++|+++|++|| .|..++ +++++|||||+|.+.++|.+|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~------~~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ------INQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE------EETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE------ecCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999995 444444 3567899999999999999999 566 568
Q ss_pred CCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeE
Q 011975 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (474)
Q Consensus 197 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~ 276 (474)
.|+.|.|.++............... ..............++|||+|||+.+|+++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 143 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSV------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 143 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSC------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcC------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE
Confidence 9999999988654322111000000 0000011222345689999999999999999999999999999
Q ss_pred eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCC
Q 011975 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 277 v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
|+|++++.++.++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+.++.+
T Consensus 144 ~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 144 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999998899999999999999999999999999 899999999999987654
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=8e-32 Score=234.33 Aligned_cols=157 Identities=17% Similarity=0.307 Sum_probs=139.2
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Ccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~ 196 (474)
.+++|||+|||+++|+++|+++|++| | .|..+++. +++|||||+|.+.++|.+|| .++ ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666543 45899999999999999999 566 668
Q ss_pred CCeeeEEEEcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeE
Q 011975 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (474)
Q Consensus 197 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~ 276 (474)
.|+.|.|.++...... ...++|||+|||+.+|+++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~~--------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 123 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL--------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 123 (172)
T ss_dssp TTEECEEECCSSCCCC--------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEE
T ss_pred cCceeeecCCcccCCC--------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceE
Confidence 9999999987533211 12469999999999999999999999999999
Q ss_pred eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 277 v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
|+|++++.+++++|||||+|.+.++|.+|+..|| ..|.|+.|.|.||.
T Consensus 124 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 124 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999998899999999999999999999999999 99999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.4e-32 Score=239.88 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=143.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|.+||.|.. .++.+..+++++|||||+|.+.++|.+||+ ++ ..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4456789999999999999999999999998877 345566689999999999999999999996 55 66899999999
Q ss_pred EcccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC
Q 011975 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
++...... .....++|||+|||+.+|+++|+++|++||.|..+ ..
T Consensus 87 ~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 87 KPKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp CCCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred cCCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 98644221 11245699999999999999999999999988766 35
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
++.++|||||+|.+.++|.+||..|+ ..|.|+.|.|.|+.+++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 78999999999999999999999999 99999999999997653
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.6e-31 Score=237.69 Aligned_cols=188 Identities=10% Similarity=0.104 Sum_probs=141.9
Q ss_pred CcceEEEcCCC-CCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 129 VHRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 129 ~~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.|+ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999875 37999999999999999999988 5589999999998
Q ss_pred ccCCCCCCCcCcccc-----ccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCe--eEeEe
Q 011975 207 SIGPATTPAVASTAT-----HQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEI--EEGPL 279 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i--~~v~i 279 (474)
............... ........................+.++|||+|||+.+|+++|+++|++||.| .+|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 654331110000000 00000000000000000011123456799999999999999999999999999 89999
Q ss_pred eecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe----EEEEEec
Q 011975 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH----ILNCQRA 323 (474)
Q Consensus 280 ~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~----~l~v~~a 323 (474)
+.++ +.++|||||+|.+.++|.+||..|| ..|.|+ ++.|+||
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8874 5667999999999999999999999 888875 6788776
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1e-30 Score=246.08 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=146.1
Q ss_pred CCCCcceEEEcCCCCCCCHhHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~ 200 (474)
+...+++|||+|||+++|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||+.++ ..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999977 8999999999998876 78899999999999999999999888 4589999
Q ss_pred eEEEEcccCCCCCCCcCccc-ccccc--c-----c------ccc------------------------------------
Q 011975 201 TACQLASIGPATTPAVASTA-THQHQ--H-----Q------HQH------------------------------------ 230 (474)
Q Consensus 201 ~~v~~~~~~~~~~~~~~~~~-~~~~~--~-----~------~~~------------------------------------ 230 (474)
|.|.++.............. ..... . . ...
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999865442100000000 00000 0 0 000
Q ss_pred -----------------------------cccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 231 -----------------------------QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 231 -----------------------------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
.................++|||+|||+.+|+++|+++|++||.|.+|+|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000000000112344568999999999999999999999999999999987
Q ss_pred cCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC-CeEEEEEecc
Q 011975 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAI 324 (474)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~-g~~l~v~~a~ 324 (474)
++ +|||||+|.+.++|.+||..|| ..|. |+.|+|.|++
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 64 6999999999999999999999 8888 9999999985
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.7e-31 Score=248.07 Aligned_cols=172 Identities=22% Similarity=0.358 Sum_probs=154.6
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
.+..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999998887 568999999999
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCC-CHHHHHHHHhccCCeeEeEeeecCC
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
+...... ......++|||+|||+.+ |+++|+++|+.||.|..|+|+++.
T Consensus 172 a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~- 221 (284)
T 3smz_A 172 TDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ- 221 (284)
T ss_dssp CCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-
T ss_pred CCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-
Confidence 8643221 112345799999999995 999999999999999999999986
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCC
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~ 328 (474)
+++++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+.++..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 79999999999999999999999999 999999999999977554
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.5e-30 Score=236.76 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=147.4
Q ss_pred CCCCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeE
Q 011975 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~ 202 (474)
...+.+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+||+.++ ..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3345678999999999 99999999999999999999999875 7899999999999999999877 568999999
Q ss_pred EEEcccCCCCCCCcCccccc---cccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccC-CeeEeE
Q 011975 203 CQLASIGPATTPAVASTATH---QHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGP 278 (474)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~ 278 (474)
|.++................ .......................+.++|||+|||+.+|+++|+++|++|| .|..|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 99987553221111100000 00000000000000111112234578999999999999999999999999 999999
Q ss_pred eeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC-CeEEEEEecccC
Q 011975 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAIDG 326 (474)
Q Consensus 279 i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~-g~~l~v~~a~~~ 326 (474)
|+.+ .+|||||+|.+.++|.+||..|+ ..|. |+.|+|.|+.+.
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9653 38999999999999999999999 8898 999999999753
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.9e-31 Score=249.02 Aligned_cols=173 Identities=14% Similarity=0.207 Sum_probs=143.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
...++|||+|||+++|+++|+++|.+|| .|..|+|+.++ .++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 99999999988 48899999999999999999999877 568999999999
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCC-CCHHHHHHHHhccCCeeEeEeeecCC
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKA 284 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~d~~ 284 (474)
+......... .......++|||+|||+. +|+++|+++|++||.|..|+|+++..
T Consensus 194 a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 194 SNPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp CCCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC
T ss_pred CCCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 8644322111 112335679999999999 99999999999999999999999876
Q ss_pred -CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 285 -TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 285 -~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
|+.++|||||+|.+.++|.+|| .|| ..|.|+.|.|.|+.+++
T Consensus 249 ~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 249 EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp ---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 5999999999999999999999 999 89999999999998753
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.6e-30 Score=231.56 Aligned_cols=187 Identities=16% Similarity=0.221 Sum_probs=144.8
Q ss_pred CcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 129 VHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 129 ~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
.+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998875 7899999999999999999877 5689999999998
Q ss_pred ccCCCCCCCcCccccc---cccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeec
Q 011975 207 SIGPATTPAVASTATH---QHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGID 282 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d 282 (474)
.......+........ .......................+.++|||+|||+.+|+++|+++|++|| .|..|+|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7554322111100000 00000000000000111112234578999999999999999999999999 9999999764
Q ss_pred CCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC-CeEEEEEeccc
Q 011975 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAID 325 (474)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~-g~~l~v~~a~~ 325 (474)
. +|||||+|.+.++|.+|+..|+ ..|. |+.|.|.|+.+
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 2 8999999999999999999999 8898 99999999875
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=6.5e-30 Score=237.23 Aligned_cols=155 Identities=22% Similarity=0.283 Sum_probs=140.4
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45568999999999999999999999999999999864 47999999999999999999887 558999999999
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCC
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~ 285 (474)
+.. .++|||+|||+.+|+++|+++|+.||.|..|+|+++ .+
T Consensus 93 a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~ 133 (261)
T 3sde_A 93 ATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DR 133 (261)
T ss_dssp CCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TT
T ss_pred ccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CC
Confidence 852 348999999999999999999999999999999999 58
Q ss_pred CCcccEEEEEEcCHHHHHHHHHcCC-C-ccC---CeEEEEEecccC
Q 011975 286 GKPKGFCLFVYKTVDAAKKALEEPH-K-NFE---GHILNCQRAIDG 326 (474)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~-~-~~~---g~~l~v~~a~~~ 326 (474)
++++|||||+|.+.++|.+||..|+ . .+. +++|.|.++...
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999999995 3 343 899999999764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.2e-30 Score=241.57 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=136.4
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.. ++|||||+|.+.++|.+||+.....|.|+.|.|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 3455789999999999999999999999999999999998733 58999999999999999997433678999999998
Q ss_pred cccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeecCC
Q 011975 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKA 284 (474)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d~~ 284 (474)
+. .++|||+|||+.+|+++|+++|+.|| .|..|+|++++.
T Consensus 115 ~~---------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 115 LT---------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp CC---------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred CC---------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 62 35999999999999999999999999 999999999864
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
+.++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.|+.+..
T Consensus 156 -~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 156 -NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp ----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred -CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 8899999999999999999999999 99999999999997644
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.3e-29 Score=238.71 Aligned_cols=154 Identities=24% Similarity=0.358 Sum_probs=141.9
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+++|||+|||+++|+++|+++|++|| |..|++ ++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 357999999999999999999999999 999887 4678999999999999999999888 55899999999853
Q ss_pred cCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC
Q 011975 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (474)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~ 287 (474)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++
T Consensus 94 --------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 94 --------------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp --------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred --------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 124899999999999999999999999999999999998999
Q ss_pred cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCC
Q 011975 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (474)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~ 327 (474)
++|||||+|.+.++|.+|+..++ ..|.|+.|.|.|+....
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999999 99999999999997644
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=3.7e-24 Score=182.79 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=112.5
Q ss_pred EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc--cCCeeeEEEEcccCCCCCCCcCccccccccccccccccccc
Q 011975 159 DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQH 236 (474)
Q Consensus 159 ~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~--~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (474)
.++|+++.. +++|||||+|.+.++|++|+..++.. +.+.. .+......... .....
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~ 59 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTV-------------------TEGSH 59 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEE-------------------ECCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCccccccc-------------------ccccc
Confidence 567888764 69999999999999999999887632 22222 21111000000 00000
Q ss_pred cccccccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC
Q 011975 237 QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (474)
Q Consensus 237 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g 315 (474)
...........++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|
T Consensus 60 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 60 HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 00112223446799999999999999999999999999999999999899999999999999999999999999 88999
Q ss_pred eEEEEEecccCCC
Q 011975 316 HILNCQRAIDGPK 328 (474)
Q Consensus 316 ~~l~v~~a~~~~~ 328 (474)
+.|.|.|+.+...
T Consensus 140 ~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 140 RELRVQMARYGRP 152 (158)
T ss_dssp SEEEEEEECCSSC
T ss_pred eEEEEEECCCCCC
Confidence 9999999986543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.4e-22 Score=160.47 Aligned_cols=108 Identities=24% Similarity=0.461 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
+++|||+|||+++|+++|+++|++||.|.+|+|++++ +.+||||||+|.+.++|++||+.|+ ..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999986 4589999999999999999999888 568999999999864
Q ss_pred CCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHH
Q 011975 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK 263 (474)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 263 (474)
........ .......++|||+|||+.+|++.
T Consensus 83 ~~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------------------------
T ss_pred cccccccc------------------------ccccCCCCceEeCCCCCCccccc
Confidence 43221110 11122335799999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=3.1e-21 Score=162.92 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=108.9
Q ss_pred CCCcceEEEEEeccHHHHHHHHHcc-C-CccCCeeeEEEEcccCCCCCCCcCcccccccccccccccccccccccccccc
Q 011975 168 SGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEY 245 (474)
Q Consensus 168 ~g~skG~afV~F~~~~~A~~Ai~~~-~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
..+.+|+++|+|.+.++|++|++.+ + ..+.| .+.+.++.......... .............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~~~ 71 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----------------HHHHHHMHRDSCP 71 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----------------SSCCCCSCSSSST
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----------------ccccccccccCCC
Confidence 3478899999999999999999998 6 56888 88888764321100000 0000011123344
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+||..|| ..|.|++|+|.|+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5689999999999999999999999999999999876 59999999999999999999999 89999999999997
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=149.91 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=76.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.+++|||+|||+.+|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.|| ..|.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45799999999999999999999999999999999999999999999999999999999999999 99999999999996
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=6e-21 Score=146.07 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=76.5
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCCeEEEEEecc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAI 324 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g~~l~v~~a~ 324 (474)
++|||+|||+.+|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.++ ..|.|++|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999999999999999999999999999999999874 57999999999998
Q ss_pred cCCCC
Q 011975 325 DGPKP 329 (474)
Q Consensus 325 ~~~~~ 329 (474)
++++.
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 26
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=8.5e-21 Score=187.09 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=79.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.||+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999999899999999999999999999999999 9999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86554
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=143.96 Aligned_cols=80 Identities=26% Similarity=0.419 Sum_probs=75.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|+ ..|.||.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999888 5689999999998
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 4
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=144.38 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=74.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCC--eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C----ccCCeEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE--IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEGHIL 318 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~----~~~g~~l 318 (474)
.-.+|||+|||+.+|+++|+++|++||. |.+|+|++|+.++++||||||+|.+.++|.+||+.|| . .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3469999999999999999999999995 6799999999999999999999999999999999988 3 4899999
Q ss_pred EEEeccc
Q 011975 319 NCQRAID 325 (474)
Q Consensus 319 ~v~~a~~ 325 (474)
.|.||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 29
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=143.23 Aligned_cols=88 Identities=30% Similarity=0.470 Sum_probs=81.2
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEe
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~ 322 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|.|+.|+|.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccCCCCC
Q 011975 323 AIDGPKPG 330 (474)
Q Consensus 323 a~~~~~~~ 330 (474)
+.....++
T Consensus 93 a~~~~~~~ 100 (116)
T 2cqd_A 93 AYLGAKPR 100 (116)
T ss_dssp STTTCCCC
T ss_pred cccCCCcc
Confidence 98765544
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=144.81 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=77.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
+.++|||+|||+.+|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999 99999999999996
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=141.85 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=75.3
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-C-ccCCeeeEEEEc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-K-KIGNRMTACQLA 206 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~-~~~gr~~~v~~~ 206 (474)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.++ . .|.||.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 3 489999999998
Q ss_pred ccCCC
Q 011975 207 SIGPA 211 (474)
Q Consensus 207 ~~~~~ 211 (474)
..++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75543
No 32
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.3e-20 Score=152.98 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=79.9
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999998899999999999999999999999999 8999999999999
Q ss_pred ccCCCCC
Q 011975 324 IDGPKPG 330 (474)
Q Consensus 324 ~~~~~~~ 330 (474)
.....+.
T Consensus 125 ~~~~~~~ 131 (135)
T 2lea_A 125 RYGRPPD 131 (135)
T ss_dssp CCCCCCT
T ss_pred CCCCCCc
Confidence 8765443
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=6.6e-19 Score=141.49 Aligned_cols=88 Identities=22% Similarity=0.369 Sum_probs=81.3
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999998899999999999999999999999999 89999999999
Q ss_pred ecccCCCCC
Q 011975 322 RAIDGPKPG 330 (474)
Q Consensus 322 ~a~~~~~~~ 330 (474)
|+..+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998766543
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6e-20 Score=140.91 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCC--eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-----ccCCee
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGE--IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-----KIGNRM 200 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~--v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-----~~~gr~ 200 (474)
..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.++++||||||+|.+.++|.+||+.+++ .|.||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44569999999999999999999999995 67999999999999999999999999999999999885 389999
Q ss_pred eEEEEcc
Q 011975 201 TACQLAS 207 (474)
Q Consensus 201 ~~v~~~~ 207 (474)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999985
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=138.89 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=79.4
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345799999999999999999999999999999999998899999999999999999999999999 8999999999999
Q ss_pred ccCCCC
Q 011975 324 IDGPKP 329 (474)
Q Consensus 324 ~~~~~~ 329 (474)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876543
No 36
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.2e-19 Score=152.61 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=79.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86544
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=142.27 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
+..++|||+|||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.|+ ..|.||.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999988 5599999999998
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=137.27 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=78.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45799999999999999999999999999999999999899999999999999999999999999 99999999999997
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
.+..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6553
No 39
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=145.61 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=80.7
Q ss_pred ccccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344557899999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987553
No 40
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=138.13 Aligned_cols=84 Identities=23% Similarity=0.390 Sum_probs=78.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEe-EeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+|||+.+|+++|+++|++||.|..| +|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 999998899999999999999999999999999 8999999999999
Q ss_pred ccCCCC
Q 011975 324 IDGPKP 329 (474)
Q Consensus 324 ~~~~~~ 329 (474)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 876543
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=135.93 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=75.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45699999999999999999999999999999999998899999999999999999999999999 89999999999997
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=139.64 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=80.2
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4456799999999999999999999999999999999998899999999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 011975 323 AIDGPKP 329 (474)
Q Consensus 323 a~~~~~~ 329 (474)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=137.47 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=77.8
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. ++ ..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999999899999999999999999999999 78 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86554
No 44
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.4e-19 Score=163.03 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=75.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccC--CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
.++|||+||++.+|+++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45999999999999999999999999 99999999999999999999999999999999999999 9999999999998
Q ss_pred cc
Q 011975 324 ID 325 (474)
Q Consensus 324 ~~ 325 (474)
..
T Consensus 148 ~~ 149 (229)
T 3q2s_C 148 NK 149 (229)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.6e-19 Score=134.24 Aligned_cols=81 Identities=36% Similarity=0.710 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++..|.|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44567899999999999999999999999999999999999899999999999999999999999887889999999987
Q ss_pred c
Q 011975 206 A 206 (474)
Q Consensus 206 ~ 206 (474)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5e-19 Score=133.27 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
.+|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999999899999999999999999999999999 8999999999999865
Q ss_pred C
Q 011975 327 P 327 (474)
Q Consensus 327 ~ 327 (474)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=140.06 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=77.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|.|++++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45699999999999999999999999999999999997 99999999999999999999999999 89999999999998
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6554
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=138.83 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=80.0
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3356799999999999999999999999999999999999899999999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 011975 323 AIDGPKP 329 (474)
Q Consensus 323 a~~~~~~ 329 (474)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876643
No 49
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=137.94 Aligned_cols=86 Identities=15% Similarity=0.293 Sum_probs=80.0
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 33456799999999999999999999999999999999999899999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.....
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987554
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=139.66 Aligned_cols=86 Identities=26% Similarity=0.406 Sum_probs=80.2
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=6.9e-19 Score=141.33 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=80.0
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999899999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9986554
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4.8e-19 Score=144.79 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=81.5
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44456799999999999999999999999999999999998899999999999999999999999999 89999999999
Q ss_pred ecccCCCCC
Q 011975 322 RAIDGPKPG 330 (474)
Q Consensus 322 ~a~~~~~~~ 330 (474)
|+.......
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998766543
No 53
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=4.6e-19 Score=151.91 Aligned_cols=139 Identities=18% Similarity=0.241 Sum_probs=80.2
Q ss_pred EEeccHHHHHHHHHccCCc---cCCeeeEEEEcccCCCCCCCcCccccccccccccccc---cccccccccccccccceE
Q 011975 177 ILFKTRSGARKALKEPQKK---IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQH---QHQHQQHHQQSEYTQRKI 250 (474)
Q Consensus 177 V~F~~~~~A~~Ai~~~~~~---~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l 250 (474)
.+|.+.++|..|+..++.. -.|+.+...+........ .... ........+......++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS---------------YERVRNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC---------------ccccccCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999888843 234544444321110000 0000 000011122334456799
Q ss_pred EccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccCCCC
Q 011975 251 FVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (474)
Q Consensus 251 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~~~~ 329 (474)
||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.|+......
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8899999999999887654
Q ss_pred C
Q 011975 330 G 330 (474)
Q Consensus 330 ~ 330 (474)
.
T Consensus 156 ~ 156 (165)
T 1rk8_A 156 R 156 (165)
T ss_dssp -
T ss_pred C
Confidence 3
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=138.76 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=79.8
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 011975 323 AIDGPKP 329 (474)
Q Consensus 323 a~~~~~~ 329 (474)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875543
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=139.11 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=79.3
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999999999899999999999999999999999999 899999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 986543
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.8e-19 Score=136.66 Aligned_cols=85 Identities=20% Similarity=0.371 Sum_probs=78.6
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456799999999999999999999999999999999997 89999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987553
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=137.47 Aligned_cols=86 Identities=27% Similarity=0.368 Sum_probs=79.7
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeec-CCCCCcccEEEEEEcCHHHHHHHHHcC-C-CccCCeEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID-KATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILN 319 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d-~~~g~~kg~afV~F~~~~~A~~Al~~~-~-~~~~g~~l~ 319 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+||..| + ..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445679999999999999999999999999999999999 789999999999999999999999999 7 899999999
Q ss_pred EEecccCCC
Q 011975 320 CQRAIDGPK 328 (474)
Q Consensus 320 v~~a~~~~~ 328 (474)
|.|+.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=2.6e-19 Score=139.70 Aligned_cols=80 Identities=30% Similarity=0.374 Sum_probs=76.6
Q ss_pred cceEEccCCCC------CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC-eEE
Q 011975 247 QRKIFVSNVGS------ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HIL 318 (474)
Q Consensus 247 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g-~~l 318 (474)
.++|||+|||+ .+++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||..|| ..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46999999999 99999999999999999999999999999999999999999999999999999 99999 999
Q ss_pred EEEecccC
Q 011975 319 NCQRAIDG 326 (474)
Q Consensus 319 ~v~~a~~~ 326 (474)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=7.3e-19 Score=133.01 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=75.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|| ..|.|+.|+|.|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45799999999999999999999999999999999998899999999999999999999999999 99999999999974
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=136.38 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=77.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCC---CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA---TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~---~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++. +++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456999999999999999999999999999999999876 66899999999999999999999999 99999999999
Q ss_pred ecccCCCC
Q 011975 322 RAIDGPKP 329 (474)
Q Consensus 322 ~a~~~~~~ 329 (474)
++......
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.6e-19 Score=138.01 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=71.8
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccC--CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.+|||+|||+.+|+++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 89999999999998
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7554
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.5e-18 Score=136.95 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=77.7
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC---eEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG---HILNC 320 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g---~~l~v 320 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ ..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456799999999999999999999999999999999997 79999999999999999999999999 77887 99999
Q ss_pred EecccCCCC
Q 011975 321 QRAIDGPKP 329 (474)
Q Consensus 321 ~~a~~~~~~ 329 (474)
.|+......
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=132.68 Aligned_cols=80 Identities=24% Similarity=0.583 Sum_probs=74.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|+|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999988668899999999886
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=9.6e-19 Score=135.57 Aligned_cols=81 Identities=15% Similarity=0.404 Sum_probs=77.3
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4699999999999999999999999999999999999899999999999999999999999999 899999999999987
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 65
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=138.34 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=77.4
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 34567999999999999999999999999999999999998999999999999999999999999888899999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87553
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=139.14 Aligned_cols=87 Identities=36% Similarity=0.664 Sum_probs=80.8
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.+++.|.++.|.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 44566789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9975433
No 67
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=7.5e-19 Score=140.84 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=73.5
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999985 4589999999999999999999999 999999999999976
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=135.07 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=78.0
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999899999999999999999999999999 89999999999
Q ss_pred eccc
Q 011975 322 RAID 325 (474)
Q Consensus 322 ~a~~ 325 (474)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 69
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.5e-18 Score=137.25 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=78.4
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc---CCeEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGHILN 319 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~---~g~~l~ 319 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 666 889999
Q ss_pred EEecccCCC
Q 011975 320 CQRAIDGPK 328 (474)
Q Consensus 320 v~~a~~~~~ 328 (474)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999986543
No 70
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=138.17 Aligned_cols=88 Identities=27% Similarity=0.581 Sum_probs=77.0
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v 203 (474)
.+.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|.|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34455678999999999999999999999999999999999998999999999999999999999999988899999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99975543
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.5e-18 Score=138.26 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=80.2
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999899999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 72
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=135.18 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=76.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .|+ ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 999999999999999999999999999999999 888 999999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976553
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=134.20 Aligned_cols=81 Identities=27% Similarity=0.439 Sum_probs=76.7
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3456799999999999999999999999999999999999899999999999999999999999999 899999999999
Q ss_pred cc
Q 011975 323 AI 324 (474)
Q Consensus 323 a~ 324 (474)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 74
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=136.89 Aligned_cols=84 Identities=23% Similarity=0.357 Sum_probs=77.8
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhc-cCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Cc-cCCeEEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSK-YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KN-FEGHILNCQ 321 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~-~~g~~l~v~ 321 (474)
...++|||+|||+.+|+++|+++|++ ||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ .. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34579999999999999999999999 9999999999998 99999999999999999999999999 77 999999999
Q ss_pred ecccCCCC
Q 011975 322 RAIDGPKP 329 (474)
Q Consensus 322 ~a~~~~~~ 329 (474)
++..+...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99765543
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=135.49 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=76.4
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCC-CCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~-g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .|+ ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3557999999999999999999999999 999999999887 999999999999999999999 888 899999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987554
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=135.75 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=72.4
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v 320 (474)
....++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+||..++ ..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999875 8999999999999999999764 5799999999
Q ss_pred EecccCCCCC
Q 011975 321 QRAIDGPKPG 330 (474)
Q Consensus 321 ~~a~~~~~~~ 330 (474)
.|+..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765443
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=136.92 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=79.4
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-------CccCC
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-------KNFEG 315 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-------~~~~g 315 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34456799999999999999999999999999999999999999999999999999999999999885 57899
Q ss_pred eEEEEEecccCCCC
Q 011975 316 HILNCQRAIDGPKP 329 (474)
Q Consensus 316 ~~l~v~~a~~~~~~ 329 (474)
+.|+|.|+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=131.84 Aligned_cols=82 Identities=30% Similarity=0.500 Sum_probs=74.6
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ ..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 346799999999999999999999999999999999998899999999999999999999999887 5689999999998
Q ss_pred ccC
Q 011975 207 SIG 209 (474)
Q Consensus 207 ~~~ 209 (474)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 644
No 79
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=8.2e-19 Score=158.06 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=74.2
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
..++|||+|||+++|+++|+++|++|| .|..|+|++|+.++++||||||+|.+.++|.+||+.|+ ..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 99999999999999999999999999999999999988 669999999999
Q ss_pred cc
Q 011975 206 AS 207 (474)
Q Consensus 206 ~~ 207 (474)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=136.45 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=73.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|.+||. ++ ..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 457999999999999999999999999999999999986 9999999999999999999999 67 89999999999987
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 81
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2.6e-19 Score=147.20 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=72.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++|| |+.|+|++|+. ++++|||||+|.+.++|.+|| .++ ..|.||.|+|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 456999999999999999999999999 77999999975 999999999999999999999 667 89999999999987
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 82
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=132.79 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+ ++ ..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999 55 67999999999
Q ss_pred EcccCCCC
Q 011975 205 LASIGPAT 212 (474)
Q Consensus 205 ~~~~~~~~ 212 (474)
++......
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99765443
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=137.12 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=79.3
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999899999999999999999999999999 89999999999
Q ss_pred ecccCC
Q 011975 322 RAIDGP 327 (474)
Q Consensus 322 ~a~~~~ 327 (474)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997653
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=135.39 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=77.8
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345679999999999999999999999999999999998 89999999999999999999999999 899999999999
Q ss_pred cccCCCC
Q 011975 323 AIDGPKP 329 (474)
Q Consensus 323 a~~~~~~ 329 (474)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876543
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.7e-18 Score=137.89 Aligned_cols=88 Identities=23% Similarity=0.380 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999999888 5689999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999765443
No 86
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=133.58 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999998888 458999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976544
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=135.61 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.+...++|||+|||+++|+++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|.+||......|.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345568999999999999999999999999999999999986 9999999999999999999999544779999999998
Q ss_pred cc
Q 011975 206 AS 207 (474)
Q Consensus 206 ~~ 207 (474)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 75
No 88
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=134.79 Aligned_cols=86 Identities=26% Similarity=0.360 Sum_probs=79.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999888 56899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976544
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=136.89 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=78.9
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||.. + ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 344567999999999999999999999999999999999999999999999999999999999999 7 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9986554
No 90
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=135.75 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=76.5
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 446799999999999999999999999999999999997 69999999999999999999999999 8999999999998
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=138.33 Aligned_cols=85 Identities=29% Similarity=0.431 Sum_probs=79.1
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCee--------EeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~ 314 (474)
....++|||+|||+.+|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999999 69999998899999999999999999999999999 8999
Q ss_pred CeEEEEEecccCCC
Q 011975 315 GHILNCQRAIDGPK 328 (474)
Q Consensus 315 g~~l~v~~a~~~~~ 328 (474)
|+.|+|.++..+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987554
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=134.75 Aligned_cols=82 Identities=27% Similarity=0.382 Sum_probs=77.1
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeE--------eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||+.|+ ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4445679999999999999999999999999999 9999999999999999999999999999999999 899
Q ss_pred CCeEEEEEecc
Q 011975 314 EGHILNCQRAI 324 (474)
Q Consensus 314 ~g~~l~v~~a~ 324 (474)
.|+.|+|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 93
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.5e-18 Score=128.58 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=74.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
.+|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999998899999999999999999999999887 5689999999998644
No 94
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=134.54 Aligned_cols=83 Identities=17% Similarity=0.317 Sum_probs=77.7
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCee-EeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeE----E
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIE-EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI----L 318 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~----l 318 (474)
...++|||+|||+.+|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3457999999999999999999999999999 99999999999999999999999999999999999 8999999 9
Q ss_pred EEEecccCC
Q 011975 319 NCQRAIDGP 327 (474)
Q Consensus 319 ~v~~a~~~~ 327 (474)
+|.|+....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997543
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=6e-18 Score=135.84 Aligned_cols=88 Identities=31% Similarity=0.520 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998899999999999999999999999888 5589999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999766544
No 96
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=131.28 Aligned_cols=84 Identities=25% Similarity=0.429 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999999899999999999999999999999887 5689999999999
Q ss_pred ccCCC
Q 011975 207 SIGPA 211 (474)
Q Consensus 207 ~~~~~ 211 (474)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 75543
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=143.43 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=77.8
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeE--eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C----ccCC
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEG 315 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~----~~~g 315 (474)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|.+||..|+ . .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999977 99999999999999999999999 9999999999 7 8999
Q ss_pred eEEEEEecccCC
Q 011975 316 HILNCQRAIDGP 327 (474)
Q Consensus 316 ~~l~v~~a~~~~ 327 (474)
+.|+|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997643
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=6.9e-19 Score=134.54 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||+.++ ..|.||.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 56999999999987
Q ss_pred cCC
Q 011975 208 IGP 210 (474)
Q Consensus 208 ~~~ 210 (474)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 99
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=132.43 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=77.8
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||.. ...|.|+.|.|.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 34567999999999999999999999999999999999998999999999999999999999995 36899999999999
Q ss_pred ccCCCC
Q 011975 324 IDGPKP 329 (474)
Q Consensus 324 ~~~~~~ 329 (474)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 876543
No 100
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=3.4e-18 Score=130.51 Aligned_cols=78 Identities=24% Similarity=0.418 Sum_probs=74.8
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+ .++ ..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 888 899999999999975
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1e-18 Score=136.24 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCC------CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCC-e
Q 011975 128 PVHRKIFVHGLGW------DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN-R 199 (474)
Q Consensus 128 ~~~~~l~V~nLp~------~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~g-r 199 (474)
..+++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|.+||+.++ ..|.| |
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999999999999999999999999999888 55888 9
Q ss_pred eeEEEEcc
Q 011975 200 MTACQLAS 207 (474)
Q Consensus 200 ~~~v~~~~ 207 (474)
.|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999985
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.1e-18 Score=129.53 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999998887 568999999998
Q ss_pred c
Q 011975 206 A 206 (474)
Q Consensus 206 ~ 206 (474)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=1.9e-18 Score=141.18 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=79.4
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred ecccCC
Q 011975 322 RAIDGP 327 (474)
Q Consensus 322 ~a~~~~ 327 (474)
|+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997644
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=137.31 Aligned_cols=83 Identities=17% Similarity=0.437 Sum_probs=77.9
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. + ..|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3457999999999999999999999999999999999999999999999999999999999999 6 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 105
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=134.19 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999999888 5699999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99976544
No 106
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=132.08 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=77.0
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567999999999999999999999999999999998853 489999999999999999999999 89999999999
Q ss_pred ecccCCCC
Q 011975 322 RAIDGPKP 329 (474)
Q Consensus 322 ~a~~~~~~ 329 (474)
|+..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 107
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.8e-18 Score=132.28 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=75.6
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567999999999999999999999999999999999853 369999999999999999999999 889999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987554
No 108
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=131.80 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=77.6
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEE-EEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC-KAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
...++|||+|||+++|+++|+++|++||.|..| +|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999998899999999999999999999999888 558999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 975543
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.8e-18 Score=133.81 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=77.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCC-eeEeEee-ecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLG-IDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~-~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v 320 (474)
..++|||+|||+.+|+++|+++|+.||. |..|.|+ +++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 888889999999999999999999999985 6899999999
Q ss_pred EecccCCCC
Q 011975 321 QRAIDGPKP 329 (474)
Q Consensus 321 ~~a~~~~~~ 329 (474)
.|+.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876554
No 110
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=134.12 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4557899999999999999999999999999999999999899999999999999999999999877 569999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 975443
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=132.42 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=75.6
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567999999999999999999999999999999999975 9999999999999999999999999 899999999999
Q ss_pred ccc
Q 011975 323 AID 325 (474)
Q Consensus 323 a~~ 325 (474)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=130.56 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=70.5
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C--ccCCeEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILN 319 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~~~g~~l~ 319 (474)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..++ . .|.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3446679999999999999999999999999999999854 8999999999999999999998 4 48899999
Q ss_pred EEecccC
Q 011975 320 CQRAIDG 326 (474)
Q Consensus 320 v~~a~~~ 326 (474)
|.|++++
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 113
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=133.66 Aligned_cols=87 Identities=28% Similarity=0.514 Sum_probs=79.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998888 56899999999
Q ss_pred EcccCCCC
Q 011975 205 LASIGPAT 212 (474)
Q Consensus 205 ~~~~~~~~ 212 (474)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99765443
No 114
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=134.08 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+||+.++ ..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999886 78999999999999999999877 6699999999999765
Q ss_pred CC
Q 011975 210 PA 211 (474)
Q Consensus 210 ~~ 211 (474)
+.
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 115
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=132.32 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=76.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---SGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~---~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
...++|||+|||+++|+++|+++|++||.|..|+|++++. +++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999987 66999999999999999999999888 5689999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99975544
No 116
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=132.06 Aligned_cols=84 Identities=24% Similarity=0.471 Sum_probs=77.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999888 55899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 986543
No 117
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=128.29 Aligned_cols=76 Identities=30% Similarity=0.705 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999999997799999999986
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=134.26 Aligned_cols=87 Identities=25% Similarity=0.449 Sum_probs=79.3
Q ss_pred ccCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeee
Q 011975 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (474)
Q Consensus 123 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~ 201 (474)
........++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999899999999999999999999999888 56899999
Q ss_pred EEEEcccC
Q 011975 202 ACQLASIG 209 (474)
Q Consensus 202 ~v~~~~~~ 209 (474)
.|.++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998643
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=134.02 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=78.8
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999999999899999999999999999999999888 558999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9755443
No 120
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=129.46 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=75.5
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|+.| .|..|+|+++ .+++++|||||+|.+.++|.+||. ++ ..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345799999999999999999999999 9999999999 789999999999999999999999 88 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
..++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87653
No 121
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.1e-18 Score=127.05 Aligned_cols=74 Identities=24% Similarity=0.587 Sum_probs=70.9
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
+|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+. ++ ..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 77 8999999999886
No 122
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=134.69 Aligned_cols=87 Identities=24% Similarity=0.421 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-------CccC
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-------KKIG 197 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-------~~~~ 197 (474)
......++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999999999999999999999999999999986 4589
Q ss_pred CeeeEEEEcccCCC
Q 011975 198 NRMTACQLASIGPA 211 (474)
Q Consensus 198 gr~~~v~~~~~~~~ 211 (474)
|+.|.|.++.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999976544
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.6e-18 Score=138.71 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=76.8
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 89999999999
Q ss_pred ecc
Q 011975 322 RAI 324 (474)
Q Consensus 322 ~a~ 324 (474)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=133.59 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=77.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345799999999999999999999999999999999998999999999999999999999999999 8999999999998
Q ss_pred ccC
Q 011975 324 IDG 326 (474)
Q Consensus 324 ~~~ 326 (474)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 125
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=144.14 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=75.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccC--CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
..++|||+|||+.+|+++|+++|+.|| .|..|+|++|+.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999999 999999999999
Q ss_pred ccc
Q 011975 323 AID 325 (474)
Q Consensus 323 a~~ 325 (474)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 965
No 126
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=9.3e-18 Score=132.38 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=77.6
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCC---eee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN---RMT 201 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g---r~~ 201 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|++ .|.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999998 899999999999999999999998885 4677 999
Q ss_pred EEEEcccCCCC
Q 011975 202 ACQLASIGPAT 212 (474)
Q Consensus 202 ~v~~~~~~~~~ 212 (474)
.|.++......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999765543
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=133.74 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=72.6
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++|| |+.|+|++++ +++++|||||+|.+.++|.+||. ++ ..|.+|.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3457999999999999999999999999 5599999997 89999999999999999999995 57 8999999999998
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 128
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=131.13 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999888 5589999999
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9985
No 129
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=131.29 Aligned_cols=86 Identities=26% Similarity=0.478 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.....++|||+|||+++|+++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||.. ...|.|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 445678999999999999999999999999999999999998999999999999999999999995 4579999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9765443
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=129.16 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=73.9
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEecc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~ 324 (474)
++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++..|.|+.|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 47999999999999999999999999999999999889999999999999999999999999988999999999873
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=134.73 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=73.5
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILN 319 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~ 319 (474)
...+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445679999999999999999999999999999999876 8999999999999999999886 479999999
Q ss_pred EEecccCCCCC
Q 011975 320 CQRAIDGPKPG 330 (474)
Q Consensus 320 v~~a~~~~~~~ 330 (474)
|.|+..+....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765543
No 132
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=5.4e-18 Score=131.33 Aligned_cols=81 Identities=25% Similarity=0.518 Sum_probs=75.9
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
+++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999899999999999999999999999888 558999999999975
Q ss_pred CC
Q 011975 209 GP 210 (474)
Q Consensus 209 ~~ 210 (474)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=135.72 Aligned_cols=83 Identities=29% Similarity=0.486 Sum_probs=78.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999 89999999999998
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6543
No 134
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=131.06 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=75.7
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
..+..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999888 45899999999
Q ss_pred Ec
Q 011975 205 LA 206 (474)
Q Consensus 205 ~~ 206 (474)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=131.86 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=70.1
Q ss_pred cccceEEccCCCC-CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C--ccCCeEEEE
Q 011975 245 YTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILNC 320 (474)
Q Consensus 245 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~~~g~~l~v 320 (474)
.+.++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||..|+ . .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3567999999999 9999999999999999999999876 6899999999999999999887 3 499999999
Q ss_pred EecccCC
Q 011975 321 QRAIDGP 327 (474)
Q Consensus 321 ~~a~~~~ 327 (474)
.|+....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997543
No 136
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=133.24 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999877 568999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-18 Score=133.08 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=79.7
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEeccHHHHHHHHHcc-C-CccCCeee
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-KVSGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMT 201 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d-~~~g~skG~afV~F~~~~~A~~Ai~~~-~-~~~~gr~~ 201 (474)
......++|||+|||+++|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+||..+ + ..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999999 789999999999999999999999998 5 66899999
Q ss_pred EEEEcccCCCC
Q 011975 202 ACQLASIGPAT 212 (474)
Q Consensus 202 ~v~~~~~~~~~ 212 (474)
.|.++......
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999765443
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=5.7e-18 Score=134.11 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=76.4
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456899999999999999999999999999999999998 99999999999999999999999999 99999999999
Q ss_pred ecc
Q 011975 322 RAI 324 (474)
Q Consensus 322 ~a~ 324 (474)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 139
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=129.69 Aligned_cols=80 Identities=18% Similarity=0.417 Sum_probs=74.8
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC-cccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK-PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~-~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.++|||+|||+.+|+++|+++|++||.|..|+|++++.++. ++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46999999999999999999999999999999999987665 89999999999999999999999 99999999999996
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 140
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=132.43 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
....++|||+|||+++|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|++||+.....|.+|.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3456799999999999999999999999955 99999998 999999999999999999999976446799999999988
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 141
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=6.1e-18 Score=129.97 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=75.8
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34579999999999999999999999999999999984 78999999999999999999999999 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76543
No 142
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=7e-18 Score=137.43 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=76.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .|+ ..|.|+.|+|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 788 89999999999997
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 143
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=133.86 Aligned_cols=83 Identities=25% Similarity=0.425 Sum_probs=76.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 99999999999999999999999888 5689999999999
Q ss_pred ccCCC
Q 011975 207 SIGPA 211 (474)
Q Consensus 207 ~~~~~ 211 (474)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 75543
No 144
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=131.31 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCee-EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCee----
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE-DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM---- 200 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~---- 200 (474)
....++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++||+.|+ ..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 99999999999999999999999999999999888 4589998
Q ss_pred eEEEEcccC
Q 011975 201 TACQLASIG 209 (474)
Q Consensus 201 ~~v~~~~~~ 209 (474)
|.|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998643
No 145
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=132.47 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=72.2
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeee
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~ 201 (474)
......++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+||+.++ ..|.||.|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34566789999999999999999999999999999999875 6999999999999999999765 45899999
Q ss_pred EEEEcccCCCC
Q 011975 202 ACQLASIGPAT 212 (474)
Q Consensus 202 ~v~~~~~~~~~ 212 (474)
.|.++..+...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999765444
No 146
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=130.78 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred ccceEEccCCCCCCCHHHHH----HHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
..++|||+|||+.+|+++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+||..|| ..|.|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45699999999999999999 99999999999999998755 8999999999999999999999 8899999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.++.+.+.
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99976543
No 147
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=130.70 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Cc
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK 195 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~ 195 (474)
......++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||+.++ ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 9999999899999999999999999999999877 56
Q ss_pred cCCeeeEEEEc
Q 011975 196 IGNRMTACQLA 206 (474)
Q Consensus 196 ~~gr~~~v~~~ 206 (474)
|.|+.|.|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 89999999987
No 148
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=129.82 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=71.8
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v 320 (474)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345679999999999999999999999999999999865 8999999999999999999764 5799999999
Q ss_pred EecccCCCC
Q 011975 321 QRAIDGPKP 329 (474)
Q Consensus 321 ~~a~~~~~~ 329 (474)
.|+..+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876544
No 149
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=131.06 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=77.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.+ +++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999998 89999999999999999999999888 56899999999
Q ss_pred EcccCCCC
Q 011975 205 LASIGPAT 212 (474)
Q Consensus 205 ~~~~~~~~ 212 (474)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99765443
No 150
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.1e-18 Score=133.48 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=74.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35799999999999999999999999999999999998999999999999999999999999999 89999999999986
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 151
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=7.2e-18 Score=133.25 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=78.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-cc---CCeee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI---GNRMT 201 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~---~gr~~ 201 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++. .+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 455678999999999999999999999999999999999998999999999999999999999998885 45 88999
Q ss_pred EEEEcccCCC
Q 011975 202 ACQLASIGPA 211 (474)
Q Consensus 202 ~v~~~~~~~~ 211 (474)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999975543
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=5e-18 Score=124.81 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..-|||+||++.+|+++|+++|.+||+|.+|++.. +||||||+|.+.++|.+|++.|| ..|.||+|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45899999999999999999999999999999965 59999999999999999999999 99999999999984
No 153
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=134.22 Aligned_cols=86 Identities=28% Similarity=0.356 Sum_probs=78.6
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Ccc
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~ 196 (474)
.....++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999999 69999998899999999999999999999999888 568
Q ss_pred CCeeeEEEEcccCCC
Q 011975 197 GNRMTACQLASIGPA 211 (474)
Q Consensus 197 ~gr~~~v~~~~~~~~ 211 (474)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999976544
No 154
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.3e-17 Score=129.53 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44568999999999999999999999997 999999999999999999999999999999999 666 669999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 975543
No 155
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=131.93 Aligned_cols=82 Identities=18% Similarity=0.315 Sum_probs=74.1
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999999654 5689999999999999999999999 89999999999
Q ss_pred ecccCC
Q 011975 322 RAIDGP 327 (474)
Q Consensus 322 ~a~~~~ 327 (474)
|+....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 997654
No 156
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=130.86 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|.+||.|.. |+|+.+ .+++++|||||+|.+.++|++||......|.+|.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345689999999999999999999999999987 888888 599999999999999999999999955779999999999
Q ss_pred cccCC
Q 011975 206 ASIGP 210 (474)
Q Consensus 206 ~~~~~ 210 (474)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86443
No 157
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.2e-17 Score=127.40 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=73.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+ .++ ..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 666 669999999999854
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=2.3e-17 Score=129.51 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=71.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||..|+ ..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345799999999999999999999999999999986 5699999999999999999999 8899999999999
Q ss_pred ccCCCCC
Q 011975 324 IDGPKPG 330 (474)
Q Consensus 324 ~~~~~~~ 330 (474)
.+.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8766544
No 159
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=141.69 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=74.3
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
..++|||+|||+++|+++|+++|++|| .|..|+|++|+.+|+++|||||+|.+.++|.+||+.|+ ..|.||.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999988 569999999999
Q ss_pred cc
Q 011975 206 AS 207 (474)
Q Consensus 206 ~~ 207 (474)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 160
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=133.84 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=73.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecC-CCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK-ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~-~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
....++|||+|||+.+|+++|+++|+.|| |..|+|++++ .+++++|||||+|.+.++|.+|| .|+ ..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44567999999999999999999999999 9999999998 68999999999999999999999 888 89999999999
Q ss_pred ecccCC
Q 011975 322 RAIDGP 327 (474)
Q Consensus 322 ~a~~~~ 327 (474)
++..+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997643
No 161
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.37 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345568999999999999999999999999999999999984 9999999999999999999999877 56899999999
Q ss_pred Ecc
Q 011975 205 LAS 207 (474)
Q Consensus 205 ~~~ 207 (474)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 162
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=130.55 Aligned_cols=81 Identities=15% Similarity=0.257 Sum_probs=74.4
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeE-eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
...++|||+|||+.+|+++|+++|++||.|.. |+|+++ .+++++|||||+|.+.++|.+||.. + ..|.||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34579999999999999999999999999987 889888 7899999999999999999999999 6 899999999999
Q ss_pred cccCC
Q 011975 323 AIDGP 327 (474)
Q Consensus 323 a~~~~ 327 (474)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 163
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.1e-18 Score=124.97 Aligned_cols=75 Identities=32% Similarity=0.621 Sum_probs=70.4
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
+|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.....|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999995447799999999875
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=130.65 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~-g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
....++|||+|||+++|+++|+++|.+|| |..|+|++++.+ ++++|||||+|.+.++|++|| .++ ..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999987 999999999999999999999 666 66999999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976544
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=136.69 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=77.0
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|| .|+ ..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999 888 8999999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8644
No 166
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=133.22 Aligned_cols=86 Identities=31% Similarity=0.520 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~ 205 (474)
.....++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|++||......|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999933669999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 875543
No 167
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-18 Score=131.71 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=74.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|| ..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45799999999999999999999999999999999999899999999999999999999999999 88999999887654
No 168
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=129.40 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=70.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~v 320 (474)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999864 8999999999999999999886 3599999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 169
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=4.1e-18 Score=136.83 Aligned_cols=103 Identities=19% Similarity=0.381 Sum_probs=89.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|.+||..++ ..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999875 4569999999999999999999888 5689999999998
Q ss_pred ccCCCCCCCcCccccccccccccccccccccccccccccccceEEccCCCCCCCHHHHHHHHhccCC
Q 011975 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273 (474)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 273 (474)
..... ..+++...++++|.++|++||.
T Consensus 83 ~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRA----------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHH----------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChh----------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 52211 1577888899999999999985
No 170
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=8.7e-18 Score=135.57 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=76.3
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999888 5589999999
Q ss_pred EEc
Q 011975 204 QLA 206 (474)
Q Consensus 204 ~~~ 206 (474)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 171
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-18 Score=138.80 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCe-eEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
...++|||+|||+.+|+++|+++|+.||.| ..|+|++++ +++++|||||+|.+.++|.+||.. + ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345799999999999999999999999999 899999998 999999999999999999999998 7 899999999999
Q ss_pred cccCC
Q 011975 323 AIDGP 327 (474)
Q Consensus 323 a~~~~ 327 (474)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 172
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=135.19 Aligned_cols=82 Identities=13% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEI-EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.| ..|+|++++ +++++|||||+|.+.++|.+||+.....|.||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34556899999999999999999999999999 899999999 9999999999999999999999994467999999999
Q ss_pred Eccc
Q 011975 205 LASI 208 (474)
Q Consensus 205 ~~~~ 208 (474)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 173
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=131.18 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhcc-CCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Cc-cCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK-IGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~-~~gr~~~v 203 (474)
....++|||+|||+++|+++|+++|++ ||.|..|+|++++ +++++|||||+|.+.++|.+||+.++ .. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999999 99999999999999999999999888 46 89999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 998655443
No 174
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.4e-17 Score=132.52 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999887 56899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 986543
No 175
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2.2e-18 Score=131.90 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=73.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.+ |.+|+..|| ..|.|+.|+|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999989999999999999999 999999999 8999999999999875
Q ss_pred CC
Q 011975 327 PK 328 (474)
Q Consensus 327 ~~ 328 (474)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 176
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=127.05 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=69.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc---cCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK---IGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~---~~gr~~~v 203 (474)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|++ +||||||+|.+.++|.+||+.++.. |.||.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35678999999999999999999999999999999875 4689999999999999999998843 78999999
Q ss_pred EEcccC
Q 011975 204 QLASIG 209 (474)
Q Consensus 204 ~~~~~~ 209 (474)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998654
No 177
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=133.24 Aligned_cols=83 Identities=28% Similarity=0.571 Sum_probs=76.6
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccC
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~ 209 (474)
.++|||+|||+++|+++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||+.....|.|+.|.|.++...
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 47999999999999999999999999999999999998999999999999999999999999446799999999999765
Q ss_pred CCC
Q 011975 210 PAT 212 (474)
Q Consensus 210 ~~~ 212 (474)
...
T Consensus 107 ~~~ 109 (116)
T 1x4b_A 107 EES 109 (116)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.9e-18 Score=125.62 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
+|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+..+..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999998778899999999875
No 179
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=130.59 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|++||+.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456799999999999999999999999999999999998899999999999999999999999988 569999999999
Q ss_pred ccc
Q 011975 206 ASI 208 (474)
Q Consensus 206 ~~~ 208 (474)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 863
No 180
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=142.32 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=77.8
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+.+|+++|+.+|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999888 45899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 181
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=4.4e-18 Score=125.31 Aligned_cols=75 Identities=29% Similarity=0.527 Sum_probs=71.4
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
+|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+...+..|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999997558899999999875
No 182
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=125.42 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++| .|..|+|+++ .+++++|||||+|.+.++|.+||. ++ ..|.||.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4456899999999999999999999999 9999999999 599999999999999999999999 77 568999999999
Q ss_pred cccCC
Q 011975 206 ASIGP 210 (474)
Q Consensus 206 ~~~~~ 210 (474)
+...+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87553
No 183
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=130.68 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|+ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999998 69999999999999999999999888 56899999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98643
No 184
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=9.5e-18 Score=136.96 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.++ ..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999888 5689999999
Q ss_pred EEcccC
Q 011975 204 QLASIG 209 (474)
Q Consensus 204 ~~~~~~ 209 (474)
.++..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998643
No 185
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=136.99 Aligned_cols=88 Identities=32% Similarity=0.508 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++. .|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999998884 589999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999765443
No 186
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=128.93 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=71.3
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC-----eEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-----HIL 318 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g-----~~l 318 (474)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ |||||+|.+.++|.+||..|| ..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34679999999999999999999999999999999865 899999999999999999999 88999 999
Q ss_pred EEEecccCCC
Q 011975 319 NCQRAIDGPK 328 (474)
Q Consensus 319 ~v~~a~~~~~ 328 (474)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987554
No 187
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=4.1e-17 Score=132.79 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=78.3
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998 99999999999999999999999999 89999999999
Q ss_pred ecccCC
Q 011975 322 RAIDGP 327 (474)
Q Consensus 322 ~a~~~~ 327 (474)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 188
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7.4e-18 Score=130.35 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
+..++|||+|||+++|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|++||+.++ ..|.||.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 345799999999999999999999999999999999999899999999999999999999999877 5689999999987
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 189
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=131.15 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=75.6
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35799999999999999999999999999999999999899999999999999999999999888 56899999999986
Q ss_pred cC
Q 011975 208 IG 209 (474)
Q Consensus 208 ~~ 209 (474)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 190
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-18 Score=129.02 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.++ ..|.++.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999899999999999999999999999888 5588888877654
No 191
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.5e-17 Score=130.34 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=75.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+.+|+++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999 99999999999999999999999877 56899999999
Q ss_pred Ecc
Q 011975 205 LAS 207 (474)
Q Consensus 205 ~~~ 207 (474)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 192
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=130.58 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCC-eeEEEEe-ecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeee
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAV-CDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~-~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~ 201 (474)
....++|||+|||+++|+++|+++|.+||. |..|+|+ .++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999998 788889999999999999999999999985 46899999
Q ss_pred EEEEcccCCC
Q 011975 202 ACQLASIGPA 211 (474)
Q Consensus 202 ~v~~~~~~~~ 211 (474)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 193
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=128.51 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=71.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecccC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~~ 326 (474)
++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+..|+ ..|.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 69999999999999999999999 8999999999999876
Q ss_pred CC
Q 011975 327 PK 328 (474)
Q Consensus 327 ~~ 328 (474)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 194
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=128.70 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=73.2
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.| +|+++ .+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34456899999999999999999999999987 56666 588999999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 195
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=136.60 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=76.0
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred ec
Q 011975 322 RA 323 (474)
Q Consensus 322 ~a 323 (474)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 196
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=1.6e-17 Score=136.14 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=73.8
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeee
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~ 201 (474)
.....++|||+|||+++|+++|+++|++||. |..|+|++|+. |+++|||||+|.+.++|++||+ ++ ..|.+|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 66 66999999
Q ss_pred EEEEcc
Q 011975 202 ACQLAS 207 (474)
Q Consensus 202 ~v~~~~ 207 (474)
.|.++.
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
No 197
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=131.40 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=70.9
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|+.| .|..|+|++|+. |+++|||||+|.+.++|.+|| .++ ..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999975 999999999999999999999 567 899999999988864
No 198
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.2e-17 Score=134.50 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=72.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCee--EEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
....++|||+|||+++|+++|+++|++| .|. .|+|++|+. |+++|||||+|.+.++|++||+.++..|.||.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3456799999999999999999999999 677 999999985 999999999999999999999987788999999998
Q ss_pred Ecc
Q 011975 205 LAS 207 (474)
Q Consensus 205 ~~~ 207 (474)
++.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=127.31 Aligned_cols=86 Identities=21% Similarity=0.400 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456678999999999999999999999999999999999863 389999999999999999999888 5689999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 200
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.1e-17 Score=137.18 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=74.0
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCC---eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
...++|||+|||+.+|+++|+++|++||. |..|+|++|+. ++++|||||+|.+.++|.+||. ++ ..|.||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34579999999999999999999999999 89999999986 9999999999999999999999 88 9999999999
Q ss_pred Eeccc
Q 011975 321 QRAID 325 (474)
Q Consensus 321 ~~a~~ 325 (474)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99864
No 201
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=132.12 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=75.8
Q ss_pred cccceEEccCCCCCCCHHHHH---HHHhccCCeeEeEeeecCCCC---CcccEEEEEEcCHHHHHHHHHcCC-CccCCeE
Q 011975 245 YTQRKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKATG---KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~d~~~g---~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~ 317 (474)
...++|||+|||+.+++++|+ ++|++||.|..|+|++++.++ +++|||||+|.+.++|.+||..|| ..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999987644 566999999999999999999999 8999999
Q ss_pred EEEEecccCC
Q 011975 318 LNCQRAIDGP 327 (474)
Q Consensus 318 l~v~~a~~~~ 327 (474)
|+|.|+.+++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 202
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-18 Score=138.71 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeE--EEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-----ccCCe
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-----KIGNR 199 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-----~~~gr 199 (474)
....++|||+|||+++|+++|+++|++||.|.. |+|++|+.++++||||||+|.+. +|.+||..+++ .|.||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355689999999999999999999999999977 99999999999999999999999 99999999995 68999
Q ss_pred eeEEEEcccC
Q 011975 200 MTACQLASIG 209 (474)
Q Consensus 200 ~~~v~~~~~~ 209 (474)
.|.|.++...
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 203
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=128.08 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=75.1
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 445678999999999999999999999999999999999863 379999999999999999999888 55899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9976543
No 204
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.3e-17 Score=122.63 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=67.8
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
.+..|||+||++.+|+++|+++|.+||+|.+++|+. +||||||+|.+.++|.+|++.|| ..+.||.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999865 68999999999999999999999 56999999999984
No 205
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=124.39 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=70.5
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 355799999999999999999999999999999996 6899999999999999999999 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 206
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=132.80 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=73.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v 203 (474)
....++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||+.....|.+|.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345689999999999999999999999999 89999999985 99999999999999999999994336699999999
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9985
No 207
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.4e-17 Score=134.60 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=78.8
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999887 56899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9975544
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=129.89 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=73.8
Q ss_pred ccceEEccCCCCCC------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe-E
Q 011975 246 TQRKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-I 317 (474)
Q Consensus 246 ~~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~-~ 317 (474)
..++|||+|||+.+ |+++|+++|++||.|..|+|++ .+++++|||||+|.+.++|.+||..|| ..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 45799999999999 8899999999999999999983 589999999999999999999999999 899998 9
Q ss_pred EEEEecccCC
Q 011975 318 LNCQRAIDGP 327 (474)
Q Consensus 318 l~v~~a~~~~ 327 (474)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997654
No 209
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=134.17 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=74.2
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCC---eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. ++++|||||+|.+.++|.+||. ++ ..|.||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34679999999999999999999999999 89999999976 9999999999999999999999 77 8999999999
Q ss_pred EecccC
Q 011975 321 QRAIDG 326 (474)
Q Consensus 321 ~~a~~~ 326 (474)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998653
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=130.48 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~~v 203 (474)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 455789999999999999999999999999999999875 6999999999999999999886 3589999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999765544
No 211
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5.4e-17 Score=137.78 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=78.4
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.++.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 56899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997543
No 212
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=133.62 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=74.3
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999655444443478999999999999999999999999 899999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+..+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987554
No 213
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=125.33 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=73.8
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCC-cceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK-SKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~-skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.++. ++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999987765 99999999999999999999877 5689999999998
Q ss_pred cc
Q 011975 207 SI 208 (474)
Q Consensus 207 ~~ 208 (474)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 214
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=129.56 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=74.8
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3445679999999999999999999999999999999876 8999999999999999999999 89999999999
Q ss_pred ecccCCCCC
Q 011975 322 RAIDGPKPG 330 (474)
Q Consensus 322 ~a~~~~~~~ 330 (474)
|+.+.+...
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 998766543
No 215
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=134.14 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCe----eEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEI----EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v 203 (474)
...++|||+|||+++|+++|++||++||.| ..|+|+.++ +|+++|||||+|.+.++|++||+.....|.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346799999999999999999999999975 699999986 899999999999999999999998557799999999
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 216
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2e-17 Score=130.38 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=70.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccC-CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+|||+.+|+++|+++|++|| .|..|.|+.+ +++|||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456999999999999999999999999 8999998643 479999999999999999999999 8999999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7554
No 217
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=4.5e-17 Score=125.05 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999884 88999999999999999999999888 568999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+...
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8654
No 218
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=127.07 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=71.6
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccC--CeEEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNCQ 321 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~--g~~l~v~ 321 (474)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|| ..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34579999999999999999999999999999999754 8899999999999999999999 8899 9999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.+++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987553
No 219
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-18 Score=132.75 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|+.||.|.. .+++++.+++++|||||+|.+.++|.+||. |+ ..|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4579999999999999999999999999988 777777789999999999999999999999 88 99999999999997
Q ss_pred cCCC
Q 011975 325 DGPK 328 (474)
Q Consensus 325 ~~~~ 328 (474)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 220
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=129.34 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
.++|||+|||+++|+++|+++|++| .|..|+|++|+ +|+++|||||+|.+.++|++||......|.+|.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 89999999998 5999999999999999999999654467999999998875
No 221
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=126.47 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeeeE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~~ 202 (474)
....+++|||+|||+++|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+||+.++ ..|.||.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988764 7999999999999999999764 458999999
Q ss_pred EEEcccCCCC
Q 011975 203 CQLASIGPAT 212 (474)
Q Consensus 203 v~~~~~~~~~ 212 (474)
|.++......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999755443
No 222
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=128.04 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4456799999999999999999999977 367888888899999999999999999999999999 999999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 976553
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=129.08 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecC-CCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-VSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~-~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
....++|||+|||+++|+++|+++|++|| |..|+|++++ .+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 58999999999999999999999 666 66999999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98643
No 224
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=135.78 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=75.2
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+||. +| ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3345799999999999999999999999999997777777899999999999999999999999 88 999999999999
Q ss_pred cccC
Q 011975 323 AIDG 326 (474)
Q Consensus 323 a~~~ 326 (474)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 225
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=129.63 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred ccccceEEccCCCCC-CCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC---CccCCeEEE
Q 011975 244 EYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILN 319 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~~~g~~l~ 319 (474)
..+.++|||+|||+. +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+||..|+ ..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999753 8999999999999999999875 469999999
Q ss_pred EEecccCC
Q 011975 320 CQRAIDGP 327 (474)
Q Consensus 320 v~~a~~~~ 327 (474)
|.|+..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997644
No 226
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=132.18 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=72.7
Q ss_pred ccccceEEccCCCCCCCHHHHH----HHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l 318 (474)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+||..|| ..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999876 7999999999998853 67899999999999999999999999 99999999
Q ss_pred EEEecccCC
Q 011975 319 NCQRAIDGP 327 (474)
Q Consensus 319 ~v~~a~~~~ 327 (474)
+|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998654
No 227
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=132.86 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|| .++ ..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999989999999999999999999999 666 56899999999985
Q ss_pred c
Q 011975 208 I 208 (474)
Q Consensus 208 ~ 208 (474)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=130.74 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=75.2
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999885 4589999999999999999999999 89999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 229
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=130.52 Aligned_cols=81 Identities=15% Similarity=0.277 Sum_probs=74.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc--------C
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF--------E 314 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~--------~ 314 (474)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..|| ..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999998 99999999999999999999999999 777 5
Q ss_pred CeEEEEEeccc
Q 011975 315 GHILNCQRAID 325 (474)
Q Consensus 315 g~~l~v~~a~~ 325 (474)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999974
No 230
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=127.69 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC---ccCCeeeE
Q 011975 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK---KIGNRMTA 202 (474)
Q Consensus 127 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~---~~~gr~~~ 202 (474)
...+++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||+.|+. .|.||.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34578999999999 9999999999999999999999865 47999999999999999998872 48999999
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
|.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997543
No 231
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2e-17 Score=133.25 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=72.3
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCee--EeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEe
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~ 322 (474)
...++|||+|||+.+|+++|+++|+.| .|+ .|+|++|+. |+++|||||+|.+.++|.+||..++..|.||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345799999999999999999999999 677 999999986 9999999999999999999999766899999999988
Q ss_pred ccc
Q 011975 323 AID 325 (474)
Q Consensus 323 a~~ 325 (474)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 232
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=9.9e-18 Score=128.18 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~~ 209 (474)
++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.+ |.+|+..++ ..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 999999988 5589999999998754
Q ss_pred C
Q 011975 210 P 210 (474)
Q Consensus 210 ~ 210 (474)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 233
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=125.91 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=72.7
Q ss_pred CCcceEEEcCCCCCCCHhHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeE
Q 011975 128 PVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~ 202 (474)
...++|||+|||+++|+++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+||+.+++ .|.||.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999998855 89999999999999999998885 58999999
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
|.++...+
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99996543
No 234
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=123.86 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=66.5
Q ss_pred ceEEccCCCCCC------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe-EEE
Q 011975 248 RKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILN 319 (474)
Q Consensus 248 ~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~-~l~ 319 (474)
++|||+|||+.+ |+++|+++|++||.|..|+|++ .+++++|||||+|.+.++|.+|+..|| ..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7899999999999999999883 588999999999999999999999999 899999 887
Q ss_pred E
Q 011975 320 C 320 (474)
Q Consensus 320 v 320 (474)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.4e-17 Score=126.64 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~~v 203 (474)
...+++|||+|||+++|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 455789999999999999999999999999999988763 6899999999999999999875 2489999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999765443
No 236
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=6.9e-17 Score=131.43 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.+++ .|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999999 999999999999999999999998884 58999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9755443
No 237
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=140.02 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=77.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeE--------eEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCe
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH 316 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~ 316 (474)
..++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||..|+ ..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999998 9999998899999999999999999999999999 899999
Q ss_pred EEEEEecccCC
Q 011975 317 ILNCQRAIDGP 327 (474)
Q Consensus 317 ~l~v~~a~~~~ 327 (474)
.|+|.++.++.
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999997654
No 238
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=121.73 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC-C-CccCCeEEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILNCQ 321 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~-~-~~~~g~~l~v~ 321 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..| + ..|.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345679999999999999999999999999999999874 899999999999999999988 7 89999999999
Q ss_pred ecc
Q 011975 322 RAI 324 (474)
Q Consensus 322 ~a~ 324 (474)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 239
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3e-17 Score=135.21 Aligned_cols=85 Identities=24% Similarity=0.411 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999899999999999999999999999888 56899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997543
No 240
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=129.94 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~ 202 (474)
.....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++||......|.||.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999986 9999999999999999999999433668999999
Q ss_pred EEEcc
Q 011975 203 CQLAS 207 (474)
Q Consensus 203 v~~~~ 207 (474)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99885
No 241
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=127.55 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCCCC------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCC
Q 011975 126 EDPVHRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN 198 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g 198 (474)
.....++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||..|++ .|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 35899999999999999999999999885 5899
Q ss_pred e-eeEEEEcccC
Q 011975 199 R-MTACQLASIG 209 (474)
Q Consensus 199 r-~~~v~~~~~~ 209 (474)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998643
No 242
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.9e-17 Score=126.35 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=70.1
Q ss_pred ccccceEEccCCCC-CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 244 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
....++|||+|||+ .+|+++|+++|++||.|..|+|. +|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999998 99999999999999999999983 7999999999999999999999 88999999999
Q ss_pred ecccCCCCC
Q 011975 322 RAIDGPKPG 330 (474)
Q Consensus 322 ~a~~~~~~~ 330 (474)
++.....+.
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998766543
No 243
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=133.60 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|.+||. ++ ..|.||.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777799999999999999999999999 66 669999999999
Q ss_pred ccc
Q 011975 206 ASI 208 (474)
Q Consensus 206 ~~~ 208 (474)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 853
No 244
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=7e-17 Score=134.55 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=75.5
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998899999999999999999999999888 5589999999
Q ss_pred EEc
Q 011975 204 QLA 206 (474)
Q Consensus 204 ~~~ 206 (474)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 245
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=128.15 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCC-CCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC---CccCCeee
Q 011975 126 EDPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~---~~~~gr~~ 201 (474)
....+++|||+|||++ +|+++|+++|++||.|.+|+|++ +||||||+|.+.++|.+||+.++ ..|.||.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 99999999999999999999874 47999999999999999999875 35899999
Q ss_pred EEEEcccCC
Q 011975 202 ACQLASIGP 210 (474)
Q Consensus 202 ~v~~~~~~~ 210 (474)
.|.++....
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999986543
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=127.10 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|+. +++++|||||+|.+.++|++||+.|+ ..|.++.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999865 45689999999999999999998888 5689999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99875543
No 247
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=122.17 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=70.3
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..|| ..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3456799999999999999999999999999999996 4499999999999999999999 899999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987554
No 248
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=131.15 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCC---eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. ++++|||||+|.+.++|.+||. ++ ..|.||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 35579999999999999999999999998 89999999986 9999999999999999999999 77 8899999999
Q ss_pred EecccC
Q 011975 321 QRAIDG 326 (474)
Q Consensus 321 ~~a~~~ 326 (474)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998753
No 249
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.2e-16 Score=130.07 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=73.7
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEccc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~~ 208 (474)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 566 668999999999864
Q ss_pred C
Q 011975 209 G 209 (474)
Q Consensus 209 ~ 209 (474)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 250
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=124.80 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=71.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..|+ ..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345679999999999999999999999999999999864 8999999999999999999999 899999999999
Q ss_pred cccCC
Q 011975 323 AIDGP 327 (474)
Q Consensus 323 a~~~~ 327 (474)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 251
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=122.88 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=70.1
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhcc--CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
....++|||+|||+.+|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..|| ..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456799999999999999999999999 999999874 6799999999999999999999 8999999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.|+.++.+
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987554
No 252
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.3e-17 Score=135.58 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
....++|||+|||+++|+++|+++|++|| |+.|+|++|+. ++++|||||+|.+.++|++||......|.+|.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 34567999999999999999999999999 77999999985 99999999999999999999954446799999999988
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 253
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=131.99 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=71.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCe----eEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEI----EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQ 321 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~ 321 (474)
..++|||+|||+.+|+++|+++|++||.| ..|+|+++ .+++++|||||+|.+.++|.+||......|.+|.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999975 68999998 48999999999999999999999983388999999999
Q ss_pred eccc
Q 011975 322 RAID 325 (474)
Q Consensus 322 ~a~~ 325 (474)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 254
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.3e-17 Score=127.26 Aligned_cols=84 Identities=20% Similarity=0.413 Sum_probs=75.4
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~ 202 (474)
.......++|||+|||+++|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|++|++.++ ..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455667899999999999999999999999999999999985 4599999999999999999999888 558999999
Q ss_pred EEEcccC
Q 011975 203 CQLASIG 209 (474)
Q Consensus 203 v~~~~~~ 209 (474)
|.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998643
No 255
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=121.76 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=65.1
Q ss_pred cceEEEcCCCCCC------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCe-ee
Q 011975 130 HRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNR-MT 201 (474)
Q Consensus 130 ~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr-~~ 201 (474)
+++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||+.++ ..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 3489999999999999999999999988 458888 77
Q ss_pred EE
Q 011975 202 AC 203 (474)
Q Consensus 202 ~v 203 (474)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 256
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.1e-16 Score=136.32 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999888 45899999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99754
No 257
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=127.45 Aligned_cols=81 Identities=17% Similarity=0.385 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c--------
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-------- 196 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~-------- 196 (474)
.+...++|||+|||+++|+++|+++|.+||.|..|+|++++ +++++|||||+|.+.++|.+||+.|++. |
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999999 9999999999999999999999988844 5
Q ss_pred CCeeeEEEEcc
Q 011975 197 GNRMTACQLAS 207 (474)
Q Consensus 197 ~gr~~~v~~~~ 207 (474)
.++.|.|.++.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57889998885
No 258
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.6e-17 Score=129.02 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCcceEEEcCCCCCCCHhHHH---HHhccCCCeeEEEEeecCCCC---CcceEEEEEeccHHHHHHHHHccC-CccCCee
Q 011975 128 PVHRKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKVSG---KSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~i~~d~~~g---~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~ 200 (474)
...++|||+|||+++|+++|+ ++|.+||.|..|+|++++.++ +++|||||+|.+.++|++||+.|+ ..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 999999999999999988654 566999999999999999999988 5589999
Q ss_pred eEEEEcccCC
Q 011975 201 TACQLASIGP 210 (474)
Q Consensus 201 ~~v~~~~~~~ 210 (474)
|.|.++..++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997655
No 259
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.6e-17 Score=127.50 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=70.3
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||..|| ..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356999999999999999999999999999999874 48999999999999999999999 89999999999997
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 260
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=123.55 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=70.6
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|.+||..|| ..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3467999999999999999999999999997 777654 679999999999999999999999 8999999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 261
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.8e-17 Score=127.51 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=74.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||. ....|+|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 45799999999999999999999999999999999998 99999999999999999999999 33889999999999987
Q ss_pred CCC
Q 011975 326 GPK 328 (474)
Q Consensus 326 ~~~ 328 (474)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 553
No 262
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=6.1e-17 Score=126.88 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++||. ....|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 446899999999999999999999999999999999998 99999999999999999999999 5567999999999987
Q ss_pred cCC
Q 011975 208 IGP 210 (474)
Q Consensus 208 ~~~ 210 (474)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 544
No 263
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=120.56 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=69.3
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||..|+ ..|.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 355799999999999999999999999999999997 4499999999999999999999 8999999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 264
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=123.54 Aligned_cols=82 Identities=27% Similarity=0.381 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|.+||.| +|+.+ .+++++|||||+|.+.++|++||..++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999977 56666 589999999999999999999999888 45899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9976543
No 265
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.3e-16 Score=126.05 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=70.9
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..|+ ..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999996 7999999999999999999999 89999999999
Q ss_pred ecccCCC
Q 011975 322 RAIDGPK 328 (474)
Q Consensus 322 ~a~~~~~ 328 (474)
|+.....
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987553
No 266
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.2e-17 Score=126.37 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=70.7
Q ss_pred ceEEccCC----CCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcC----HHH----HHHHHH--cCC-Cc
Q 011975 248 RKIFVSNV----GSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT----VDA----AKKALE--EPH-KN 312 (474)
Q Consensus 248 ~~l~V~nL----p~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~----~~~----A~~Al~--~~~-~~ 312 (474)
++|||+|| |+.+++..|+++|+.||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999999999999999996 333 889988 778 89
Q ss_pred cCCeEEEEEeccc
Q 011975 313 FEGHILNCQRAID 325 (474)
Q Consensus 313 ~~g~~l~v~~a~~ 325 (474)
|+||+|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 267
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=1.6e-16 Score=126.34 Aligned_cols=74 Identities=20% Similarity=0.432 Sum_probs=68.7
Q ss_pred ccceEEccCCCCC-CCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999998 48999999999999999999999 8999999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 268
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.7e-17 Score=126.06 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=69.8
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|+..|+ ..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3457999999999999999999999999999999973 48999999999999999999999 8999999999998
Q ss_pred cc
Q 011975 324 ID 325 (474)
Q Consensus 324 ~~ 325 (474)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 269
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=2.6e-16 Score=121.78 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=69.8
Q ss_pred cccccceEEccCCCC-CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 243 SEYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.....++|||+|||+ .+++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..|+ ..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999982 8999999999999999999999 8899999999
Q ss_pred EecccCC
Q 011975 321 QRAIDGP 327 (474)
Q Consensus 321 ~~a~~~~ 327 (474)
.++..+.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9997643
No 270
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=123.96 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=71.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|||+.+|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356799999999999999999999999988766 2478899999999999999999999999 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76553
No 271
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=128.03 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeee
Q 011975 127 DPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~ 201 (474)
....++|||+|||+.+++++|+ ++|++||.|.+|.|.. +++++|||||+|.+.++|.+||+.++ ..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999987753 68899999999999999999999988 55899999
Q ss_pred EEEEcccC
Q 011975 202 ACQLASIG 209 (474)
Q Consensus 202 ~v~~~~~~ 209 (474)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998644
No 272
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-17 Score=129.03 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|.. +++.+..+++++|||||+|.+.++|.+||+ ++ ..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999988 678887789999999999999999999999 76 668999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+...
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8654
No 273
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=8.6e-17 Score=124.82 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=73.4
Q ss_pred cccceEEccCCCCCCCHHHHH----HHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEE
Q 011975 245 YTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~ 319 (474)
.+.++|||+|||+.+|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+|+..|+ ..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 356799999999999999999 9999999999999874 56789999999999999999999999 899999999
Q ss_pred EEecccCC
Q 011975 320 CQRAIDGP 327 (474)
Q Consensus 320 v~~a~~~~ 327 (474)
|.|+.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 274
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.1e-16 Score=126.80 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=72.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|+++ +.++|||||+|.+.++|.+|+..|| ..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4579999999999999999999999999999999875 4569999999999999999999999 89999999999997
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 275
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.2e-16 Score=125.95 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=69.8
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~ 204 (474)
....++|||+|||+++|+++|+++|++|| .|..|+|+.+ +++|||||+|.+.++|++||+.+++ .|.||.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 8999987643 4899999999999999999999885 5899999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98644
No 276
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=118.62 Aligned_cols=78 Identities=19% Similarity=0.436 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|++||+.+++ .|.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 57999999999999999998885 68999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9765443
No 277
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=136.48 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=77.7
Q ss_pred cccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|+ ..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 89999999999999999999999999 89999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 278
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=122.73 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|+.| ..|+++.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999977 378889998899999999999999999999999887 5699999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99975443
No 279
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-17 Score=129.07 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999555444443388999999999999999999999888 568999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976544
No 280
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=2.9e-16 Score=140.60 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=76.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
+.++|||+|||+.+|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||..++ ..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999 89999999999986
Q ss_pred cC
Q 011975 325 DG 326 (474)
Q Consensus 325 ~~ 326 (474)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 281
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=123.07 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=70.0
Q ss_pred ccccceEEc--cCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc-----CC
Q 011975 244 EYTQRKIFV--SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-----EG 315 (474)
Q Consensus 244 ~~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~-----~g 315 (474)
..++++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|| ..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345679999 669999999999999999999999998643 8999999999999999999999 777 68
Q ss_pred eEEEEEecccCCC
Q 011975 316 HILNCQRAIDGPK 328 (474)
Q Consensus 316 ~~l~v~~a~~~~~ 328 (474)
++|.|.|+...+-
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 9999999986553
No 282
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-16 Score=122.25 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCC-----eee
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN-----RMT 201 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g-----r~~ 201 (474)
...++|||+|||+++|+++|+++|.+||.|..|+|+.+ |||||+|.+.++|++||+.|+. .|.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999876 8999999999999999999884 5788 999
Q ss_pred EEEEcccCCC
Q 011975 202 ACQLASIGPA 211 (474)
Q Consensus 202 ~v~~~~~~~~ 211 (474)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999976543
No 283
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=123.46 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+||..|+ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 455689999999999999999999999999999999876 6899999999999999999888 568999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+...+..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9765543
No 284
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.4e-18 Score=134.86 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccC
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIG 197 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~ 197 (474)
....++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 445689999999999999999999999999998 9999998899999999999999999999999888 5689
Q ss_pred CeeeEEEEcccCCC
Q 011975 198 NRMTACQLASIGPA 211 (474)
Q Consensus 198 gr~~~v~~~~~~~~ 211 (474)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999875543
No 285
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-16 Score=123.82 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=68.8
Q ss_pred ceEEEcCC----CCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecc----HHH----HHHHHH--ccC-Cc
Q 011975 131 RKIFVHGL----GWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT----RSG----ARKALK--EPQ-KK 195 (474)
Q Consensus 131 ~~l~V~nL----p~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~----~~~----A~~Ai~--~~~-~~ 195 (474)
++|||+|| |+.+++.+|+++|+.||+|.+|+++.|+.||+++|||||+|.+ ++. |.+||. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 888888 566 56
Q ss_pred cCCeeeEEEEcc
Q 011975 196 IGNRMTACQLAS 207 (474)
Q Consensus 196 ~~gr~~~v~~~~ 207 (474)
|.||.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=118.66 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=67.1
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+||. |+ ..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4699999999999999999999999999987 55555555 99999999999999999 88 999999999998865
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 287
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=120.29 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=70.1
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccC--CeeeE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIG--NRMTA 202 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~--gr~~~ 202 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|++||+.++ ..|. ++.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455689999999999999999999999999999988754 6899999999999999999888 5578 89999
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
|.++...+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997543
No 288
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.7e-16 Score=118.70 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=63.2
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
....++|||+|||+.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.++. .....+.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 345679999999999999999999999999999999875 6999999999999998432 2224567999999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 289
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=117.90 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=69.1
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|| .+|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|+ ..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35579999996 89999999999999999999984 458999999999999999999999 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 290
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=116.27 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=68.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc-C-CccCCeeeEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMTAC 203 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~-~-~~~~gr~~~v 203 (474)
.+...++|||+|||+++|+++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|++.+ + ..+.|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 445678999999999999999999999999999999886 3689999999999999999987 6 5689999999
Q ss_pred EEc
Q 011975 204 QLA 206 (474)
Q Consensus 204 ~~~ 206 (474)
.++
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 291
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=120.26 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=69.8
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999997 666654 688999999999999999999988 56899999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.4e-16 Score=122.36 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|.+|+|+ +++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34557899999999999999999999999999999987 467999999999999999999888 55899999999
Q ss_pred Ecc
Q 011975 205 LAS 207 (474)
Q Consensus 205 ~~~ 207 (474)
++.
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 875
No 293
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=120.30 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=70.7
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456689999999999999999999999999999998753 6899999999999999999888 56899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 997543
No 294
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=133.82 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=72.6
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeE--eeec---CCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP--LGID---KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~--i~~d---~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~ 317 (474)
..+.++|||+|||+.+|+++|+++|++||.|..|. ++.+ ..+++++|||||+|.+.++|.+||..|| ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34567999999999999999999999999998751 1111 3478999999999999999999999999 8999999
Q ss_pred EEEEecccCC
Q 011975 318 LNCQRAIDGP 327 (474)
Q Consensus 318 l~v~~a~~~~ 327 (474)
|.|.|+.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997644
No 295
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=124.97 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~---g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~ 204 (474)
...++|||+|||+++|+++|+++|++||.|. ++++.++.+ |+++|||||+|.+.++|++||+.++ .+.|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 4568999999999999999999999999999 888888877 7999999999999999999999884 4788887776
Q ss_pred Ec
Q 011975 205 LA 206 (474)
Q Consensus 205 ~~ 206 (474)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 296
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=119.27 Aligned_cols=76 Identities=16% Similarity=0.332 Sum_probs=66.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCC-eeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC--CccCCeEEEEEe
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQR 322 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~~~g~~l~v~~ 322 (474)
..++|||+|||+.+|+++|+++|++||. |..+.+ . ++|||||+|.+.++|.+||..|| ..|.|+.|+|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4579999999999999999999999999 555555 2 38999999999999999999888 589999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
+.++..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 986543
No 297
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=123.83 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~~ 207 (474)
..++|||+|||+++|+++|+++|++||.|..|+|+. ++|||||+|.+.++|++||+.|+ ..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998764 67899999999999999999988 55899999999997
Q ss_pred cCCC
Q 011975 208 IGPA 211 (474)
Q Consensus 208 ~~~~ 211 (474)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6544
No 298
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=120.10 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=70.2
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34457899999999999999999999999987665 3378999999999999999999999888 56899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 986543
No 299
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=8.4e-16 Score=121.32 Aligned_cols=79 Identities=20% Similarity=0.440 Sum_probs=69.6
Q ss_pred cCCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeE
Q 011975 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (474)
Q Consensus 124 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~ 202 (474)
.......++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|++.|+ ..|.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445667899999999999999999999999999999987 6899999999999999999888 558999999
Q ss_pred EEEcccCC
Q 011975 203 CQLASIGP 210 (474)
Q Consensus 203 v~~~~~~~ 210 (474)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99986543
No 300
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=1.3e-15 Score=150.18 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=77.3
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+.+|+++|..+|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 446799999999999999999999999999999999999899999999999999999999999988 5689999999999
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 301
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.3e-16 Score=121.48 Aligned_cols=81 Identities=26% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCHhHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeee
Q 011975 127 DPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~ 201 (474)
.+.+++|||+|||+++|+++|+ ++|++||.|..|+|+. +++++|||||+|.+.++|.+|++.++ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998874 67889999999999999999999888 55899999
Q ss_pred EEEEcccCC
Q 011975 202 ACQLASIGP 210 (474)
Q Consensus 202 ~v~~~~~~~ 210 (474)
.|.++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999986543
No 302
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=6.3e-16 Score=133.34 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446799999999999999999999999999999999999 99999999999999999999999888 5689999999998
Q ss_pred cc
Q 011975 207 SI 208 (474)
Q Consensus 207 ~~ 208 (474)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 303
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.5e-15 Score=117.48 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeE
Q 011975 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~ 202 (474)
...+.+++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+||..+++ .+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678999999998 99999999999999999999873 78999999999999999998885 58999999
Q ss_pred EEEcccC
Q 011975 203 CQLASIG 209 (474)
Q Consensus 203 v~~~~~~ 209 (474)
|.++...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998643
No 304
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.1e-15 Score=127.54 Aligned_cols=77 Identities=18% Similarity=0.084 Sum_probs=69.4
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEec
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a 323 (474)
..+|||+||++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|+ ..|.| ++|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 357999999999999999999999999999999754 258999999999999999999999 88865 99999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
+.+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8653
No 305
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=119.23 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=70.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEe-EeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+|||+.+|+++|+++|++||.|..| .|++++.+ +.|||+|.+.++|.+||..|| ..|.|++|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999 48877544 349999999999999999999 9999999999999
Q ss_pred ccC
Q 011975 324 IDG 326 (474)
Q Consensus 324 ~~~ 326 (474)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=6.1e-16 Score=123.72 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=64.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeE-----EE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI-----LN 319 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~-----l~ 319 (474)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|| ..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3579999999999999999999999999999999764 999999999999999999999 8999988 66
Q ss_pred EEeccc
Q 011975 320 CQRAID 325 (474)
Q Consensus 320 v~~a~~ 325 (474)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 307
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=7.9e-16 Score=116.85 Aligned_cols=77 Identities=25% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEc
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~ 206 (474)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|+++... ...+.++.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEc
Confidence 445679999999999999999999999999999999874 789999999999999954322 23467999999998
Q ss_pred ccC
Q 011975 207 SIG 209 (474)
Q Consensus 207 ~~~ 209 (474)
..+
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 644
No 308
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=116.13 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=69.7
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999874 399999999999999999888 55899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9976544
No 309
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=113.18 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=63.4
Q ss_pred eEEccCCCCCCCHHH----HHHHHhcc-CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 249 KIFVSNVGSELEPQK----LLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~----L~~~F~~~-G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
+|||+|||+.+++++ |+++|++| |.|.+| + .|||||.|.+.++|.+|++.|+ ..|.||+|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999987 55899999 599988 2 2999999999999999999999 999999999999
Q ss_pred cccCCC
Q 011975 323 AIDGPK 328 (474)
Q Consensus 323 a~~~~~ 328 (474)
|..+..
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 987654
No 310
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=1.4e-15 Score=130.87 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=76.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 4699999999999999999999999999999999998899999999999999999999999998 899999999999975
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 311
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-16 Score=117.69 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=66.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+.. ...+.+++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 3469999999999999999999999999999999865 599999999999999865433 3567999999999976
Q ss_pred CCC
Q 011975 326 GPK 328 (474)
Q Consensus 326 ~~~ 328 (474)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 312
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.5e-15 Score=119.01 Aligned_cols=78 Identities=31% Similarity=0.440 Sum_probs=69.3
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|.+||.|..|+|+ ++||||+|.+.++|.+||+.|+ ..|.++.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999887 3599999999999999999887 558999999999
Q ss_pred cccCCCC
Q 011975 206 ASIGPAT 212 (474)
Q Consensus 206 ~~~~~~~ 212 (474)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9765443
No 313
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=115.88 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=69.3
Q ss_pred CCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.....++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|++||+.++ ..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999999999874 399999999999999999888 55899999999
Q ss_pred EcccCC
Q 011975 205 LASIGP 210 (474)
Q Consensus 205 ~~~~~~ 210 (474)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997553
No 314
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.3e-15 Score=122.35 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=69.0
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccE-EEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEe
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQR 322 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~ 322 (474)
..+|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|++.|| ..|.| ++|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3578899999999999999999999999999988642 788 9999999999999999999 88988 9999999
Q ss_pred cccCC
Q 011975 323 AIDGP 327 (474)
Q Consensus 323 a~~~~ 327 (474)
++...
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 97653
No 315
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.5e-15 Score=130.42 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=76.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4699999999999999999999999999999999998899999999999999999999999999 899999999999875
Q ss_pred CC
Q 011975 326 GP 327 (474)
Q Consensus 326 ~~ 327 (474)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 316
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.6e-16 Score=123.08 Aligned_cols=77 Identities=16% Similarity=0.400 Sum_probs=68.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCC---CCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEe
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~---g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~ 322 (474)
..++|||+|||+.+|+++|+++|++||.|. ++++.++.+ |+++|||||+|.+.++|.+||..++ .++|+.|.|..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEecc
Confidence 357999999999999999999999999999 888888777 7999999999999999999999985 47888887765
Q ss_pred cc
Q 011975 323 AI 324 (474)
Q Consensus 323 a~ 324 (474)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 317
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1.8e-15 Score=133.59 Aligned_cols=84 Identities=21% Similarity=0.433 Sum_probs=76.9
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEec
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a 323 (474)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34567999999999999999999999999999999999999999999999999999999999998558999999999998
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7643
No 318
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.1e-15 Score=117.85 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=71.9
Q ss_pred cccceEEccCCCC-----CCCHHHHHHHHhccCCeeEeEeeecCCC-CCcccEEEEEEcCHHHHHHHHHcCC-CccCCeE
Q 011975 245 YTQRKIFVSNVGS-----ELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (474)
Q Consensus 245 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~i~~v~i~~d~~~-g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~ 317 (474)
.++++|+|+||.. ..++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|| +.|.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999963 2378999999999999999999998654 6899999999999999999999999 9999999
Q ss_pred EEEEeccc
Q 011975 318 LNCQRAID 325 (474)
Q Consensus 318 l~v~~a~~ 325 (474)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 319
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=1.8e-15 Score=132.52 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=74.4
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccC
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~ 209 (474)
.++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||..++..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4799999999999999999999999999999999987 699999999999999999999999988999999999987643
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=115.41 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|.+||.|..| +.++.+++ ||||+|.+.++|.+||. ++ ..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 66665665 99999999999999999 77 5699999999987
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6443
No 321
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=118.02 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCC-CCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
.+..++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+||+.++ ..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45578999999998 99999999999999999999883 6899999999999999999887 56899999999
Q ss_pred EcccCCC
Q 011975 205 LASIGPA 211 (474)
Q Consensus 205 ~~~~~~~ 211 (474)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9975543
No 322
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=7e-16 Score=117.14 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=67.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEeccc
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~~ 325 (474)
.++|||+|||+.+|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|+..|| ..|.|++|+|.|+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4699999999999999999999999 99999884 569999999999999999999999 899999999999865
Q ss_pred C
Q 011975 326 G 326 (474)
Q Consensus 326 ~ 326 (474)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4e-15 Score=115.73 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=68.1
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccC--CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
....++|||+|||+++|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999998764 5799999999999999999888 5589999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99975543
No 324
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.8e-15 Score=119.00 Aligned_cols=75 Identities=20% Similarity=0.464 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCC-CCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEE
Q 011975 127 DPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~ 204 (474)
....++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|++||+.|+ ..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 57899999999999999998888 56899999999
Q ss_pred EcccC
Q 011975 205 LASIG 209 (474)
Q Consensus 205 ~~~~~ 209 (474)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98643
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=2.4e-15 Score=114.16 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.+++ .+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346899999999999999999999999 99999884 6889999999999999999998884 589999999998
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6443
No 326
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=116.30 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCC-eeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC--ccCCeeeEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGNRMTAC 203 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~--~~~gr~~~v 203 (474)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||+.+++ .|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999999 6666552 578999999999999999998885 589999999
Q ss_pred EEcccCCC
Q 011975 204 QLASIGPA 211 (474)
Q Consensus 204 ~~~~~~~~ 211 (474)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99975543
No 327
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=2.7e-15 Score=131.42 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=74.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEEEeccc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v~~a~~ 325 (474)
..++|||+|||+.+|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||..++..|.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 34699999999999999999999999999999999986 58999999999999999999999888899999999999875
Q ss_pred C
Q 011975 326 G 326 (474)
Q Consensus 326 ~ 326 (474)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 328
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.8e-15 Score=118.72 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=66.5
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccE-EEEEEcCHHHHHHHHHcCC-CccCC--eEEEEEec
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~~~g--~~l~v~~a 323 (474)
..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+..|| ..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 46789999999999999999999999999999652 386 9999999999999999999 88887 69999999
Q ss_pred ccCC
Q 011975 324 IDGP 327 (474)
Q Consensus 324 ~~~~ 327 (474)
+.+.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 329
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=2.1e-15 Score=127.00 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999886 58999999999999999999887 5689999999
Q ss_pred EEcccC
Q 011975 204 QLASIG 209 (474)
Q Consensus 204 ~~~~~~ 209 (474)
.++...
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998643
No 330
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=115.55 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=66.1
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEccc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~ 208 (474)
.+++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999998864 789999999999999876443 3446899999998865
Q ss_pred CCC
Q 011975 209 GPA 211 (474)
Q Consensus 209 ~~~ 211 (474)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=118.30 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCcceEEE--cCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c-----C
Q 011975 126 EDPVHRKIFV--HGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-----G 197 (474)
Q Consensus 126 ~~~~~~~l~V--~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~-----~ 197 (474)
....+++||| +||++++|+++|+++|++||.|..|.|+. .||||||+|.+.++|++|++.|++. | .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445688999 77999999999999999999999998753 3789999999999999999999954 4 5
Q ss_pred CeeeEEEEcccCCCC
Q 011975 198 NRMTACQLASIGPAT 212 (474)
Q Consensus 198 gr~~~v~~~~~~~~~ 212 (474)
++.|.|.++...+..
T Consensus 95 g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 95 KITLYLNFVEKVQWS 109 (114)
T ss_dssp EEECEEEEESCCCCS
T ss_pred CcEEEEEecccCccc
Confidence 889999998755544
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.1e-15 Score=113.37 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=64.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhcc----C-------CeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKY----G-------EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
..++|||+|||+.+|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|| ..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45699999999999999999999999 8 8999998765 899999999999999999 888 899
Q ss_pred CCeEEEEEe
Q 011975 314 EGHILNCQR 322 (474)
Q Consensus 314 ~g~~l~v~~ 322 (474)
.|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=8.1e-16 Score=128.42 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEE--Eeec---CCCCCcceEEEEEeccHHHHHHHHHccC-CccCCee
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK--AVCD---KVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~--i~~d---~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~ 200 (474)
...+++|||+|||+++|+++|+.+|++||.|..|. ++.+ ..+++++|||||+|.+.++|.+||..++ ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45568999999999999999999999999998751 1111 2378999999999999999999999888 5589999
Q ss_pred eEEEEcccC
Q 011975 201 TACQLASIG 209 (474)
Q Consensus 201 ~~v~~~~~~ 209 (474)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999643
No 334
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=7.5e-15 Score=131.78 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=78.1
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345799999999999999999999999999999999999899999999999999999999999888 5689999999999
Q ss_pred ccCCCC
Q 011975 207 SIGPAT 212 (474)
Q Consensus 207 ~~~~~~ 212 (474)
...+..
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 765443
No 335
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.5e-15 Score=125.86 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 125 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
......++|||+|||+++|+++|+++|++||.|..++|+.++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 344567899999999999999999999999999999999998899999999999999999999999888 5689999999
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.++.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9984
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=111.89 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|| ++|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+||..|+ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 99999999999999999999884 578999999999999999999988 458999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976544
No 337
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=6.7e-15 Score=127.03 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999998899999999999999999999999888 5689999999987
Q ss_pred c
Q 011975 207 S 207 (474)
Q Consensus 207 ~ 207 (474)
+
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=4.9e-15 Score=119.27 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=69.0
Q ss_pred cccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
...++|||+|| .+|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|+ ..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45679999996 69999999999999999999985 459999999999999999999999 8999999999999
Q ss_pred ccCCC
Q 011975 324 IDGPK 328 (474)
Q Consensus 324 ~~~~~ 328 (474)
.....
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 339
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=3.9e-15 Score=127.89 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=74.0
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcccC
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~~~ 209 (474)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.....+.|+.|.|.++..+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 56899999999999999999999999999999999988999999999999999999999994336799999999998643
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.9e-15 Score=114.09 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEE-EeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCK-AVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~-i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
...++|||+|||+++|+++|+++|.+||.|..|+ |+.++.++ .|||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4468999999999999999999999999999994 88876543 39999999999999999888 568999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8754
No 341
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=5.8e-15 Score=130.74 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=70.7
Q ss_pred ccceEEccCCC-CCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEec
Q 011975 246 TQRKIFVSNVG-SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (474)
Q Consensus 246 ~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a 323 (474)
..++|||+||| +.+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45699999999 899999999999999999999998763 8999999999999999999999 9999999999998
Q ss_pred ccC
Q 011975 324 IDG 326 (474)
Q Consensus 324 ~~~ 326 (474)
...
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=1.3e-14 Score=121.12 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCC--eeeEEEEc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN--RMTACQLA 206 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g--r~~~v~~~ 206 (474)
-.+|||+||++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.|++ .|.+ +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457999999999999999999999999999998653 3689999999999999999999995 4755 99999999
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7553
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=4.6e-15 Score=118.60 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=63.2
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCee-----eE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM-----TA 202 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~-----~~ 202 (474)
..++|||+|||+++|+++|+++|.+||.|..|+|+.+ |||||+|.+.++|++||+.|+ ..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4579999999999999999999999999999999875 899999999999999999888 4588887 66
Q ss_pred EEEcc
Q 011975 203 CQLAS 207 (474)
Q Consensus 203 v~~~~ 207 (474)
|....
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 66554
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=107.54 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=63.3
Q ss_pred cceEEEcCCCCCCCHhH----HHHHhccC-CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEE
Q 011975 130 HRKIFVHGLGWDTKAET----LIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~----L~~~f~~~-G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v 203 (474)
.+.|||+|||+.+++++ |+++|++| |.|.+| ++ |||||.|.+.++|.+|++.|+ ..+.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999988 55899999 599988 34 999999999999999999998 5699999999
Q ss_pred EEcccCCCC
Q 011975 204 QLASIGPAT 212 (474)
Q Consensus 204 ~~~~~~~~~ 212 (474)
.++......
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999766543
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=4.8e-15 Score=132.40 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=69.6
Q ss_pred ccccceEEccCCCCCC---------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 244 EYTQRKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
....++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|..|+..|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456799999999998 79999999999999999999864 8999999999999999999999 778
Q ss_pred ------------CCeEEEEEecccCCCCC
Q 011975 314 ------------EGHILNCQRAIDGPKPG 330 (474)
Q Consensus 314 ------------~g~~l~v~~a~~~~~~~ 330 (474)
.|+.|.|.||...+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC------
T ss_pred eccccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998876543
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.8e-14 Score=112.47 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCC-----CCCHhHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEeccHHHHHHHHHccCC-ccCCee
Q 011975 128 PVHRKIFVHGLGW-----DTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQK-KIGNRM 200 (474)
Q Consensus 128 ~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~v~~v~i~~d~~~-g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~ 200 (474)
..+++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|++ .+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468999999963 2378999999999999999999998754 68999999999999999999999995 589999
Q ss_pred eEEEEcc
Q 011975 201 TACQLAS 207 (474)
Q Consensus 201 ~~v~~~~ 207 (474)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=8.5e-15 Score=110.96 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=63.8
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Cc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK 195 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~ 195 (474)
...++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999988754 799999999999999999 777 56
Q ss_pred cCCeeeEEEE
Q 011975 196 IGNRMTACQL 205 (474)
Q Consensus 196 ~~gr~~~v~~ 205 (474)
|.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 8999999874
No 348
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=6e-14 Score=131.36 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=73.9
Q ss_pred ccccceEEccCCCCCCCHHHHH----HHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEE
Q 011975 244 EYTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l 318 (474)
....++|||+|||+.+|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||..|| ..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3456799999999999999977 8999999999999975 67899999999999999999999999 89999999
Q ss_pred EEEecccCC
Q 011975 319 NCQRAIDGP 327 (474)
Q Consensus 319 ~v~~a~~~~ 327 (474)
+|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 349
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=1.8e-14 Score=127.44 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=77.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEEc
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~~ 206 (474)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999999888 5689999999998
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.6e-14 Score=114.84 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEeccHHHHHHHHHccCCc-cCC--eeeEEEEc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQKK-IGN--RMTACQLA 206 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~-afV~F~~~~~A~~Ai~~~~~~-~~g--r~~~v~~~ 206 (474)
-+|||+||++.+|+++|+++|++||.|.+|+|+.+ ++|| |||+|.+.++|.+|++.|++. |.+ +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46889999999999999999999999999988764 3688 999999999999999999954 777 89999999
Q ss_pred ccCC
Q 011975 207 SIGP 210 (474)
Q Consensus 207 ~~~~ 210 (474)
....
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7543
No 351
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=3.6e-14 Score=122.71 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccC---CeeeE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG---NRMTA 202 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~---gr~~~ 202 (474)
....++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|++.+++ .+. ++.|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 4467899999999999999999999999999999999997 699999999999999999999999995 354 49999
Q ss_pred EEEc
Q 011975 203 CQLA 206 (474)
Q Consensus 203 v~~~ 206 (474)
|.++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=2.9e-14 Score=111.39 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=69.8
Q ss_pred ccceEEccCC--CCCC--------CHHHHHHHHhccCCeeEeEeeecCCC--CCcccEEEEEEcCHHHHHHHHHcCC-Cc
Q 011975 246 TQRKIFVSNV--GSEL--------EPQKLLAFFSKYGEIEEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KN 312 (474)
Q Consensus 246 ~~~~l~V~nL--p~~~--------t~~~L~~~F~~~G~i~~v~i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~-~~ 312 (474)
++++|+|.|+ |..+ ++++|++.|++||.|.+|+|++++.+ ++++||+||+|.+.++|.+|+..|| +.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5679999998 3233 34799999999999999999998754 4689999999999999999999999 99
Q ss_pred cCCeEEEEEeccc
Q 011975 313 FEGHILNCQRAID 325 (474)
Q Consensus 313 ~~g~~l~v~~a~~ 325 (474)
|.||.|.|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=4.3e-14 Score=113.76 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|| ++|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 79999999999999999999885 578999999999999999999888 568999999999
Q ss_pred cccCCC
Q 011975 206 ASIGPA 211 (474)
Q Consensus 206 ~~~~~~ 211 (474)
+.....
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 975543
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1e-13 Score=110.16 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=69.1
Q ss_pred ccccceEEccCCCCCCC-----------HHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C
Q 011975 244 EYTQRKIFVSNVGSELE-----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (474)
..+.++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|| .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567999999954432 6899999999999999966 543 379999999999999999999999 8
Q ss_pred ccCCeEEEEEecccCCC
Q 011975 312 NFEGHILNCQRAIDGPK 328 (474)
Q Consensus 312 ~~~g~~l~v~~a~~~~~ 328 (474)
.|.||+|.|.++.+...
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999976553
No 355
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=9.8e-14 Score=111.08 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEeccHHHHHHHHHccCC-ccCC--eeeEEEEcc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQK-KIGN--RMTACQLAS 207 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~-afV~F~~~~~A~~Ai~~~~~-~~~g--r~~~v~~~~ 207 (474)
.|||+||++.+|+++|+++|++||.|.+|+|+. + .|| |||+|.+.++|..|++.|++ .|.+ +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 468999999999999999999999999999865 2 286 99999999999999999995 5766 689999886
Q ss_pred cCC
Q 011975 208 IGP 210 (474)
Q Consensus 208 ~~~ 210 (474)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=4.6e-14 Score=126.06 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=68.8
Q ss_pred CCCCcceEEEcCCCCCC---------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-c
Q 011975 126 EDPVHRKIFVHGLGWDT---------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-K 195 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~ 195 (474)
.....++|||+||+..+ |+++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|++ .
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34567899999999998 7999999999999999999985 479999999999999999999984 4
Q ss_pred c------------CCeeeEEEEcccCCC
Q 011975 196 I------------GNRMTACQLASIGPA 211 (474)
Q Consensus 196 ~------------~gr~~~v~~~~~~~~ 211 (474)
| .|+.|.|.|+...+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 6 799999999976543
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=6.4e-14 Score=111.51 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=70.0
Q ss_pred ccceEEccCCCC--C---CCHHHHHHHHhccCCeeEeEeeecCC----CCCcccEEEEEEcCHHHHHHHHHcCC-CccCC
Q 011975 246 TQRKIFVSNVGS--E---LEPQKLLAFFSKYGEIEEGPLGIDKA----TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (474)
Q Consensus 246 ~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~i~~v~i~~d~~----~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g 315 (474)
++++|+|.||-. . -.+++|++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|+..|| +.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999942 2 24789999999999999999999864 46788999999999999999999999 99999
Q ss_pred eEEEEEecc
Q 011975 316 HILNCQRAI 324 (474)
Q Consensus 316 ~~l~v~~a~ 324 (474)
|.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=9.2e-14 Score=125.73 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=72.5
Q ss_pred ccccceEEccCCCC-CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEE
Q 011975 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (474)
Q Consensus 244 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~ 321 (474)
....++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999 99999999999999999999999875 8999999999999999999998 89999999999
Q ss_pred ecccC
Q 011975 322 RAIDG 326 (474)
Q Consensus 322 ~a~~~ 326 (474)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99765
No 359
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=1.6e-13 Score=118.62 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=69.5
Q ss_pred CCCcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCCeeeEEEE
Q 011975 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~gr~~~v~~ 205 (474)
....++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999977655 4588999999999999999999999988 568999999999
Q ss_pred cccC
Q 011975 206 ASIG 209 (474)
Q Consensus 206 ~~~~ 209 (474)
+..+
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8644
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.6e-13 Score=104.80 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCCCcceEEEcCCCCCC-----------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-
Q 011975 126 EDPVHRKIFVHGLGWDT-----------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ- 193 (474)
Q Consensus 126 ~~~~~~~l~V~nLp~~~-----------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~- 193 (474)
....+++|+|+||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44567899999994333 25899999999999999955 554 389999999999999999999998
Q ss_pred CccCCeeeEEEEcccCC
Q 011975 194 KKIGNRMTACQLASIGP 210 (474)
Q Consensus 194 ~~~~gr~~~v~~~~~~~ 210 (474)
..|.||.|.|.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 45899999999986543
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=4.8e-14 Score=110.04 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=62.3
Q ss_pred ccCCCCCCCHHHHHHHH------------hccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEE
Q 011975 252 VSNVGSELEPQKLLAFF------------SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (474)
Q Consensus 252 V~nLp~~~t~~~L~~~F------------~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l 318 (474)
+.||++.+++++|+++| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|| +.|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777776666 999999999999886 47899999999999999999999999 99999999
Q ss_pred EEEec
Q 011975 319 NCQRA 323 (474)
Q Consensus 319 ~v~~a 323 (474)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=99.94 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=63.8
Q ss_pred cceEEccCCC-------CCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEE
Q 011975 247 QRKIFVSNVG-------SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILN 319 (474)
Q Consensus 247 ~~~l~V~nLp-------~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~ 319 (474)
.++|.|.-.. ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|..||..++ .+.+++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEE
Confidence 3466666543 468999999999999999999997 3679999999999999999999965 36799999
Q ss_pred EEecccCCC
Q 011975 320 CQRAIDGPK 328 (474)
Q Consensus 320 v~~a~~~~~ 328 (474)
|.|+...+.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999976653
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=1.4e-13 Score=121.68 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=71.0
Q ss_pred cceEEccCCCC-CCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 247 QRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 247 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|+ ..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46999999999 99999999999999999999998874 8999999999999999999998 89999999999998
Q ss_pred cCC
Q 011975 325 DGP 327 (474)
Q Consensus 325 ~~~ 327 (474)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=3.9e-13 Score=124.15 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=70.0
Q ss_pred ccccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEe
Q 011975 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (474)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~ 322 (474)
....++|||+|||+.+|+++|+++|+.||.|..|+|.++ +|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345579999999999999999999999999999999654 8999999999999999999999 899999999999
Q ss_pred ccc
Q 011975 323 AID 325 (474)
Q Consensus 323 a~~ 325 (474)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=5.3e-13 Score=104.21 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=68.6
Q ss_pred CcceEEEcCC--CCCCC--------HhHHHHHhccCCCeeEEEEeecCCC--CCcceEEEEEeccHHHHHHHHHccCC-c
Q 011975 129 VHRKIFVHGL--GWDTK--------AETLIDAFKQYGEIEDCKAVCDKVS--GKSKGYGFILFKTRSGARKALKEPQK-K 195 (474)
Q Consensus 129 ~~~~l~V~nL--p~~~t--------~~~L~~~f~~~G~v~~v~i~~d~~~--g~skG~afV~F~~~~~A~~Ai~~~~~-~ 195 (474)
.++.|.|.|+ |.++. +++|++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.||+ .
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4689999998 44443 4699999999999999999998754 47899999999999999999999995 5
Q ss_pred cCCeeeEEEEcc
Q 011975 196 IGNRMTACQLAS 207 (474)
Q Consensus 196 ~~gr~~~v~~~~ 207 (474)
+.||.|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 899999999874
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=8.1e-13 Score=105.13 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=68.9
Q ss_pred CcceEEEcCCC--CCC---CHhHHHHHhccCCCeeEEEEeecCC----CCCcceEEEEEeccHHHHHHHHHccCC-ccCC
Q 011975 129 VHRKIFVHGLG--WDT---KAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQK-KIGN 198 (474)
Q Consensus 129 ~~~~l~V~nLp--~~~---t~~~L~~~f~~~G~v~~v~i~~d~~----~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~g 198 (474)
.+++|+|+|+- .++ .+++|++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|++.|++ .+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46899999994 222 3689999999999999999999864 467899999999999999999999994 5899
Q ss_pred eeeEEEEcc
Q 011975 199 RMTACQLAS 207 (474)
Q Consensus 199 r~~~v~~~~ 207 (474)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.1e-12 Score=97.71 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=65.2
Q ss_pred CcceEEEcCCC-------CCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeee
Q 011975 129 VHRKIFVHGLG-------WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (474)
Q Consensus 129 ~~~~l~V~nLp-------~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~ 201 (474)
...+|.|.-.. ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|.+||+.++. +.++.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeE
Confidence 35677777655 458999999999999999999987 36899999999999999999998554 679999
Q ss_pred EEEEcccCCC
Q 011975 202 ACQLASIGPA 211 (474)
Q Consensus 202 ~v~~~~~~~~ 211 (474)
.|.|+...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999875543
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.1e-13 Score=106.36 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=61.1
Q ss_pred EcCCCCCCCHhHHHHHh------------ccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeee
Q 011975 135 VHGLGWDTKAETLIDAF------------KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMT 201 (474)
Q Consensus 135 V~nLp~~~t~~~L~~~f------------~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~ 201 (474)
+.|||+.+++++|+++| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.|++ .+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777776666 999999999999887 589999999999999999999999984 5899999
Q ss_pred EEEEc
Q 011975 202 ACQLA 206 (474)
Q Consensus 202 ~v~~~ 206 (474)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=3.4e-12 Score=100.74 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=66.0
Q ss_pred cccceEEccCCCCCC----------CHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 245 YTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 245 ~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
.++++|.|.||-... .+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+..|| +.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356799999984321 246899999999999999997653 59999999999999999999999 999
Q ss_pred CCeEEEEEeccc
Q 011975 314 EGHILNCQRAID 325 (474)
Q Consensus 314 ~g~~l~v~~a~~ 325 (474)
+||.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=7.6e-12 Score=117.92 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=64.3
Q ss_pred ccccceEEccC--CCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-Ccc---CCe-
Q 011975 244 EYTQRKIFVSN--VGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGH- 316 (474)
Q Consensus 244 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~---~g~- 316 (474)
..++++|||+| |++.+|+++|+++|++||.|.+|.|++ +||||||+|.+.++|.+||+.|| ..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44667999999 578999999999999999999998854 48999999999999999999999 655 345
Q ss_pred -EEEEEecc
Q 011975 317 -ILNCQRAI 324 (474)
Q Consensus 317 -~l~v~~a~ 324 (474)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67777774
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.8e-11 Score=115.38 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=63.7
Q ss_pred cCCCCCcceEEEcC--CCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-c---C
Q 011975 124 ADEDPVHRKIFVHG--LGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---G 197 (474)
Q Consensus 124 ~~~~~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~---~ 197 (474)
......+++|||+| |++.+|+++|+++|++||.|.+|+|.. +||||||+|.+.++|++||+.||+. + .
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 33456678999999 579999999999999999999987643 5799999999999999999999954 3 4
Q ss_pred Ce--eeEEEEc
Q 011975 198 NR--MTACQLA 206 (474)
Q Consensus 198 gr--~~~v~~~ 206 (474)
|+ .+.+.++
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 56 4666665
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.2e-10 Score=91.71 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=67.6
Q ss_pred ccccccceEEccCCCCC-CCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcC-HHHHHHHHHcCC---CccCCe
Q 011975 242 QSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT-VDAAKKALEEPH---KNFEGH 316 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~-~~~A~~Al~~~~---~~~~g~ 316 (474)
.....++.|||+||++. ++.++|+++|++||.|.+|.|.++.. .|||+|.+ ..+|..|+..++ ..|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34456789999999999 99999999999999999999988743 59999999 899999999996 688998
Q ss_pred EEEEEecc
Q 011975 317 ILNCQRAI 324 (474)
Q Consensus 317 ~l~v~~a~ 324 (474)
.+.+....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887654
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=1.2e-10 Score=91.84 Aligned_cols=75 Identities=8% Similarity=0.086 Sum_probs=63.3
Q ss_pred CcceEEEcCCCCCC----------CHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccC
Q 011975 129 VHRKIFVHGLGWDT----------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG 197 (474)
Q Consensus 129 ~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~ 197 (474)
.++.|.|.|+=... .+++|++.|++||.|.+|+|.++. ++||+||+|.+.++|.+|++.|++ .+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999984221 245889999999999999886653 589999999999999999999995 589
Q ss_pred CeeeEEEEcc
Q 011975 198 NRMTACQLAS 207 (474)
Q Consensus 198 gr~~~v~~~~ 207 (474)
||.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=84.78 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=63.0
Q ss_pred cccceEEccCCC----CCCCH----HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCC
Q 011975 245 YTQRKIFVSNVG----SELEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (474)
Q Consensus 245 ~~~~~l~V~nLp----~~~t~----~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g 315 (474)
++..||+|..++ .++.. .+|.+.|.+||.|..++|+.|+ +||+|.+.++|.+||. || ..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 455688888776 33433 6789999999999999999874 8999999999999999 88 99999
Q ss_pred eEEEEEecccCC
Q 011975 316 HILNCQRAIDGP 327 (474)
Q Consensus 316 ~~l~v~~a~~~~ 327 (474)
|.|+|+++.+..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999997654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=4.3e-10 Score=88.57 Aligned_cols=75 Identities=24% Similarity=0.189 Sum_probs=65.5
Q ss_pred CCCcceEEEcCCCCC-CCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecc-HHHHHHHHHccC---CccCCeee
Q 011975 127 DPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT-RSGARKALKEPQ---KKIGNRMT 201 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~-~~~A~~Ai~~~~---~~~~gr~~ 201 (474)
-+..+.|||+||+++ ++.++|+++|++||.|..|.++++.. .|||.|.+ ..+|..|+..++ ..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456789999999999 99999999999999999999998874 59999999 899999999985 45888887
Q ss_pred EEEEcc
Q 011975 202 ACQLAS 207 (474)
Q Consensus 202 ~v~~~~ 207 (474)
.+.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777653
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=7.5e-10 Score=81.68 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=63.1
Q ss_pred ccccccceEEccCCCCC-----CCH----HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-C
Q 011975 242 QSEYTQRKIFVSNVGSE-----LEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (474)
Q Consensus 242 ~~~~~~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (474)
...++..||+|..++.. +.. .+|.+.|.+||.|..++|+.|+ +||+|.+.++|.+||+ |+ .
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34556679999988743 333 5689999999999999999874 9999999999999999 88 9
Q ss_pred ccCCeEEEEEeccc
Q 011975 312 NFEGHILNCQRAID 325 (474)
Q Consensus 312 ~~~g~~l~v~~a~~ 325 (474)
.+.||.|+|++..+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999988643
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.1e-09 Score=78.06 Aligned_cols=72 Identities=24% Similarity=0.246 Sum_probs=60.4
Q ss_pred CCcceEEEcCCC----CCCCH----hHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-CccCC
Q 011975 128 PVHRKIFVHGLG----WDTKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN 198 (474)
Q Consensus 128 ~~~~~l~V~nLp----~~~t~----~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~~g 198 (474)
+..-||+|.-++ .++-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |+ ..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 344588888776 23333 6788999999999999999986 8999999999999999 66 66999
Q ss_pred eeeEEEEccc
Q 011975 199 RMTACQLASI 208 (474)
Q Consensus 199 r~~~v~~~~~ 208 (474)
|.|+|+++..
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999863
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.82 E-value=9.9e-09 Score=92.00 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHhccCCeeEeEeeecCC----CCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEEEecc
Q 011975 258 ELEPQKLLAFFSKYGEIEEGPLGIDKA----TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (474)
Q Consensus 258 ~~t~~~L~~~F~~~G~i~~v~i~~d~~----~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v~~a~ 324 (474)
.-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|| +.|.||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 346789999999999999999986643 45899999999999999999999999 99999999999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.1e-08 Score=75.43 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=60.7
Q ss_pred CCCcceEEEcCCCCC-----CCH----hHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC-Ccc
Q 011975 127 DPVHRKIFVHGLGWD-----TKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (474)
Q Consensus 127 ~~~~~~l~V~nLp~~-----~t~----~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~-~~~ 196 (474)
-+..-||+|.-++.+ +-. .+|.+.|.+||.|..+||+.|+ +||+|.+.++|.+||+ ++ ..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345569999988732 323 5788999999999999999986 9999999999999999 66 779
Q ss_pred CCeeeEEEEcc
Q 011975 197 GNRMTACQLAS 207 (474)
Q Consensus 197 ~gr~~~v~~~~ 207 (474)
.||.|+|++.+
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=7e-08 Score=86.41 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=63.7
Q ss_pred ceEEEcCCC-----CCCCHhHHHHHhccCCCeeEEEEeecCC----CCCcceEEEEEeccHHHHHHHHHccCC-ccCCee
Q 011975 131 RKIFVHGLG-----WDTKAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQK-KIGNRM 200 (474)
Q Consensus 131 ~~l~V~nLp-----~~~t~~~L~~~f~~~G~v~~v~i~~d~~----~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~ 200 (474)
+.+.+.|+- .+-.+++|++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|+..|++ .+.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 455555553 2335679999999999999999986654 458999999999999999999999995 589999
Q ss_pred eEEEEcc
Q 011975 201 TACQLAS 207 (474)
Q Consensus 201 ~~v~~~~ 207 (474)
|.+.+..
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.4e-07 Score=68.76 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=65.8
Q ss_pred cceEEccCCCCCCCHHHHHHHHhcc-----CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.++|-|-|||..++...|+.|++++ |.|+.|.+..| .+=|+|+|.+...|.+|.-.|+ ..|.||+|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4689999999999999999999999 99999999888 5679999999999999999999 9999999999
Q ss_pred Eec
Q 011975 321 QRA 323 (474)
Q Consensus 321 ~~a 323 (474)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 654
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.7e-06 Score=64.57 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhcc-----CCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEE
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQ-----YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~-----~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v 203 (474)
..++|.|.|||..+.++.|.-+|+. =|.|..|.... +-|+|+|.+...|++.|+.-.+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999987 26888887644 2499999999999999999889999999998
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
....
T Consensus 79 ~P~~ 82 (104)
T 2dhx_A 79 RPAP 82 (104)
T ss_dssp EECC
T ss_pred EcCC
Confidence 7753
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.2e-05 Score=59.02 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCcceEEEcCCCCCCCHhHHHHHhccC-----CCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCC-ccCCeee
Q 011975 128 PVHRKIFVHGLGWDTKAETLIDAFKQY-----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMT 201 (474)
Q Consensus 128 ~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~-~~~gr~~ 201 (474)
...++|-|-|||-.+++..|+.|++++ |.|..|.+..|. +=|+|+|.+...|.+|.-.+++ .|.||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346899999999999999999999999 999999888876 3499999999999999988884 5899999
Q ss_pred EEEEc
Q 011975 202 ACQLA 206 (474)
Q Consensus 202 ~v~~~ 206 (474)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98654
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=7.5e-05 Score=55.77 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=63.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhcc-----CCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCCeEEEE
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g~~l~v 320 (474)
...+|.|.|||..+.++.|.-+|+.- |.|..|.... +-|+|+|.+...|.+.|..-.+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45699999999999999999999872 6788887643 4689999999999999999888999999999
Q ss_pred EecccCCC
Q 011975 321 QRAIDGPK 328 (474)
Q Consensus 321 ~~a~~~~~ 328 (474)
.....+..
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88665443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=3.2e-05 Score=58.09 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=62.1
Q ss_pred cceEEccCCCCCC-C----HHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC-CccCCeEEEE
Q 011975 247 QRKIFVSNVGSEL-E----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (474)
Q Consensus 247 ~~~l~V~nLp~~~-t----~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~~~g~~l~v 320 (474)
.++|+|.||+..+ + .+.++.+|..|+.+.....++. =.-..|.|.+.++|.+|...|+ ..|.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999998765 2 2578999999999988887754 2357899999999999999999 8899999999
Q ss_pred Eeccc
Q 011975 321 QRAID 325 (474)
Q Consensus 321 ~~a~~ 325 (474)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99973
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.00015 Score=53.35 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
.||+-++|.++...||.++|+.||-| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 44444999999999999999999965 67777765 5999999999999999976
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00025 Score=52.41 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=54.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC--cccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK--PKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~--~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
++|.||+||+.+|++++.+.+..+..+.....+..+.+.+ .-..|||.|.+.+++..-.+.++ +.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999999888877766653322 24669999999999999999888 544
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00019 Score=53.07 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~ 193 (474)
.++| ++|.++...||..+|++||-| .|+.+-|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 67777765 59999999999999999763
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.21 E-value=0.00066 Score=50.00 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=46.3
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
.+.++| ++|..+...+|.++|++||.| .|+++-|. -|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456777 999999999999999999954 56666553 59999999999999999763
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0029 Score=48.95 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=59.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCCCccCC-eEEEEEecc
Q 011975 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILNCQRAI 324 (474)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~~~g-~~l~v~~a~ 324 (474)
..+.|.|-+.|... ...|...|++||.|++..... ...+-.|+|.+..+|.+||.+....|.+ ..|-|.++.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 45689999999885 667778899999999888621 2678999999999999999997677774 778888875
Q ss_pred c
Q 011975 325 D 325 (474)
Q Consensus 325 ~ 325 (474)
+
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.06 E-value=0.0016 Score=48.07 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=51.8
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCC--cceEEEEEeccHHHHHHHHHccCCc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~--skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
++|-||+||+.+|++++.+.+..+..+.....+.-+.+.+ .-.-|||.|.+.+++....+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999999988776665554443221 2245999999999999999998854
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.93 E-value=0.0008 Score=49.73 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=45.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
..|+| ++|..+...+|.++|++||. ..|+++-|. -|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 46677 99999999999999999994 467776653 59999999999999999763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.86 E-value=0.0019 Score=47.90 Aligned_cols=66 Identities=6% Similarity=-0.060 Sum_probs=50.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCC--cccEEEEEEcCHHHHHHHHHcCC-Ccc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK--PKGFCLFVYKTVDAAKKALEEPH-KNF 313 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~--~kg~afV~F~~~~~A~~Al~~~~-~~~ 313 (474)
.+|.||.||+.+|++++.+.+..+-.+.....+..+.+-+ .-..|||.|.+.++...-.+.++ ..|
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4899999999999999999888876665555544432222 23569999999999999999888 444
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.77 E-value=0.0083 Score=45.02 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCC-C----HhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCc-cCCeeeEE
Q 011975 130 HRKIFVHGLGWDT-K----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (474)
Q Consensus 130 ~~~l~V~nLp~~~-t----~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~-~~gr~~~v 203 (474)
..+|+|.||+.++ + .+.++.+|..|+++.....++.- .-..|.|.+.++|.+|-..+++. +.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999999766 3 25778999999999888776643 13799999999999999999965 89999999
Q ss_pred EEcc
Q 011975 204 QLAS 207 (474)
Q Consensus 204 ~~~~ 207 (474)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9987
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.013 Score=45.34 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=56.5
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCC-eeeEEEEc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN-RMTACQLA 206 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~g-r~~~v~~~ 206 (474)
..+-|.|-+.|... ...|..+|++||.|.+.... + ...+-.|.|.+..+|++||.+....|.+ -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 45689999999885 67788899999999988751 1 2348999999999999999997777764 55666664
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.10 E-value=0.013 Score=45.99 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=56.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeE-eEeeecCC--------CC-----CcccEEEEEEcCHHHHHHHHHcCCCcc
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKA--------TG-----KPKGFCLFVYKTVDAAKKALEEPHKNF 313 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~i~~d~~--------~g-----~~kg~afV~F~~~~~A~~Al~~~~~~~ 313 (474)
.-|.|-+.|...+. .|.+.|++||.|.+ +.+.++.. .. ....+..|+|.+..+|.+||......|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 46888888766554 56678999999976 33322100 00 125678999999999999999988889
Q ss_pred CCeEEEEEeccc
Q 011975 314 EGHILNCQRAID 325 (474)
Q Consensus 314 ~g~~l~v~~a~~ 325 (474)
.|..|-|.++.+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999999988864
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.75 E-value=0.01 Score=43.99 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=46.3
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCC--cceEEEEEeccHHHHHHHHHccCCc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~--skG~afV~F~~~~~A~~Ai~~~~~~ 195 (474)
+-+|.||.||+.+|++++.+.+..+-.+.....+.-+.+-+ .-.-|||.|.+.+++....+..++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 45799999999999999988887765443222221111111 1124999999999999999998864
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.72 E-value=0.0057 Score=59.62 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=43.3
Q ss_pred cceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 130 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
.|+|||. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 3799998 89999999999999999999999766543 259999999999999887664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.51 E-value=0.006 Score=59.43 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=43.9
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
.+.|||. .|..+++.+|.++|++||.|.++.+..+. .-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4689997 79999999999999999999999987653 469999999999999887654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.84 E-value=0.047 Score=42.80 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=55.2
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecC---------CCC-----CcceEEEEEeccHHHHHHHHHccCCcc
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK---------VSG-----KSKGYGFILFKTRSGARKALKEPQKKI 196 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~---------~~g-----~skG~afV~F~~~~~A~~Ai~~~~~~~ 196 (474)
.-|.|-+.|.+.+ ..|.+.|++||.|.+-.-..+. ... .......|+|.+..+|.+||......|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4688889977655 4567789999998763211110 000 124567999999999999999999889
Q ss_pred CCeeeEEEEcc
Q 011975 197 GNRMTACQLAS 207 (474)
Q Consensus 197 ~gr~~~v~~~~ 207 (474)
.|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99888888774
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.18 E-value=0.8 Score=45.51 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccC
Q 011975 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 131 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~ 193 (474)
..++|+ +|..+...+|.++|+.||.| .|+.+.+. .|||.|.+.+.|..+++.+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 356665 99999999999999999965 66666553 69999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.17 E-value=1.1 Score=44.53 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=45.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
...|+|+ +|..|...+|.++|+.||.| +|+++-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4577777 99999999999999999954 5665543 369999999999999998875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.38 E-value=25 Score=24.94 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=44.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcC
Q 011975 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 247 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (474)
.+.|.|-|+|..+-..++--.....|---.|..+ .|.|.|.|.+.++-+.|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4577899999999888887777777776677654 466999999999999999765
No 404
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=51.96 E-value=5.1 Score=40.58 Aligned_cols=8 Identities=50% Similarity=0.621 Sum_probs=3.9
Q ss_pred HHHHHhcc
Q 011975 146 TLIDAFKQ 153 (474)
Q Consensus 146 ~L~~~f~~ 153 (474)
.|..+|..
T Consensus 385 ~Ll~~F~~ 392 (649)
T 3tj1_A 385 TLTTLFKT 392 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455543
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.90 E-value=30 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=35.9
Q ss_pred eEEEcCCCC-C--------CCHhHHHHHh--ccCCCeeEEEEeecCCCCCcceEEEEEeccHH
Q 011975 132 KIFVHGLGW-D--------TKAETLIDAF--KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183 (474)
Q Consensus 132 ~l~V~nLp~-~--------~t~~~L~~~f--~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~ 183 (474)
++.|-|+|. . ....+|++.| ..|.++ .|+.+..+ . -++|+|.|.|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~-~-Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY-L-GHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS-S-BEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC-C-CCceeEEEEecCCh
Confidence 577888886 2 2346899977 999887 46667765 3 37899999997543
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.18 E-value=48 Score=23.69 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHhHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHc
Q 011975 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191 (474)
Q Consensus 132 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~ 191 (474)
+.|+--+...++..+|++.+++ |+ .|..|+.+..+ .+ .--|||.+....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 3555557889999999999887 44 46677666644 22 22499999887776665443
No 407
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=41.55 E-value=64 Score=21.43 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=43.8
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEcCHHHHHHHHHcCC
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (474)
.+|.|.++.-.--...|...+.. -.|..+.+-.. .+.+.|.|.+.+....+|+.+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 47899999988888999999999 88888877432 5678888886667777777654
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=37.00 E-value=1.1e+02 Score=21.67 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=44.6
Q ss_pred CcceEEEcCCCCCCCHhHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHcc
Q 011975 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (474)
Q Consensus 129 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~ 192 (474)
.++-|.|-|||..+-..++.-.....|---.|..+- |-|.|.|.+.+.-..||..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 457789999999999888887777777655665443 45999999999999998764
No 409
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=34.19 E-value=8.8 Score=42.14 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=13.1
Q ss_pred eEEEEEeccHHHHHHHHHccC
Q 011975 173 GYGFILFKTRSGARKALKEPQ 193 (474)
Q Consensus 173 G~afV~F~~~~~A~~Ai~~~~ 193 (474)
+.++|.--+.+-|......+.
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHHHH
Confidence 456777777766666555443
No 410
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=30.62 E-value=22 Score=38.99 Aligned_cols=18 Identities=0% Similarity=-0.118 Sum_probs=8.6
Q ss_pred EEEEEcCHHHHHHHHHcC
Q 011975 292 CLFVYKTVDAAKKALEEP 309 (474)
Q Consensus 292 afV~F~~~~~A~~Al~~~ 309 (474)
++|-..+...|..+...|
T Consensus 444 vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 444 VIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EEEEESCHHHHHHHHHHT
T ss_pred EEEEeCcHHHHHHHHHHH
Confidence 344444555555544443
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.20 E-value=73 Score=26.09 Aligned_cols=52 Identities=12% Similarity=-0.020 Sum_probs=36.6
Q ss_pred ccceEEccCCCC-C--------CCHHHHHHHH--hccCCeeEeEeeecCCCCCcccEEEEEEcCHH
Q 011975 246 TQRKIFVSNVGS-E--------LEPQKLLAFF--SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300 (474)
Q Consensus 246 ~~~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~ 300 (474)
...++.|-|+|. . .....|++.| ..|.++. |+.+..+ .-+.|++.|.|.+.-
T Consensus 11 WPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 11 YPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp ESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred CCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 345888999987 2 2347899977 9998876 4444443 236899999997544
No 412
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.68 E-value=9.3 Score=30.73 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=17.8
Q ss_pred HHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEc
Q 011975 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (474)
Q Consensus 262 ~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (474)
+++.++|...|.|+.+.. .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455667777787776653 2899999975
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.26 E-value=1.1e+02 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.0
Q ss_pred cceEEEEEeccHHHHHHHHHccCC
Q 011975 171 SKGYGFILFKTRSGARKALKEPQK 194 (474)
Q Consensus 171 skG~afV~F~~~~~A~~Ai~~~~~ 194 (474)
..||-||++...++.-.+|+...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 789999999999888888876543
No 414
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.42 E-value=1.5e+02 Score=19.30 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=43.1
Q ss_pred eEEccCCCCCCCHHHHHHHHhccCCeeEeEeeecCCCCCcccEEEEEEc----CHHHHHHHHHcCC
Q 011975 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK----TVDAAKKALEEPH 310 (474)
Q Consensus 249 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~----~~~~A~~Al~~~~ 310 (474)
+|.|.++.-..-...|...+...-.|..+.+-.. .+.+.|.|. +.+....+|..+.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 6889999887788899999999888887776443 567889985 5567777776654
No 415
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=24.32 E-value=67 Score=21.19 Aligned_cols=23 Identities=9% Similarity=0.488 Sum_probs=17.6
Q ss_pred eEEEEeecCCCCCcceEEEEEecc
Q 011975 158 EDCKAVCDKVSGKSKGYGFILFKT 181 (474)
Q Consensus 158 ~~v~i~~d~~~g~skG~afV~F~~ 181 (474)
..++++.++ ...+.|+++|.|.+
T Consensus 20 R~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhhcc-CCCcCceEEEEEec
Confidence 356777776 45678999999987
No 416
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.73 E-value=99 Score=24.89 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhccCCe---eEeEeeecCCCCCcccEEEE
Q 011975 259 LEPQKLLAFFSKYGEI---EEGPLGIDKATGKPKGFCLF 294 (474)
Q Consensus 259 ~t~~~L~~~F~~~G~i---~~v~i~~d~~~g~~kg~afV 294 (474)
.|+++|+++-.+.|.+ +++++..|..+|+.+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5899999999999988 46666666448898888873
No 417
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.00 E-value=84 Score=23.01 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=44.2
Q ss_pred CCCCCCCHhHHHHHh-ccCCCeeEEEEeecCCCCCcceEEEEEeccHHHHHHHHHccCCccCCeeeEEEEcc
Q 011975 137 GLGWDTKAETLIDAF-KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (474)
Q Consensus 137 nLp~~~t~~~L~~~f-~~~G~v~~v~i~~d~~~g~skG~afV~F~~~~~A~~Ai~~~~~~~~gr~~~v~~~~ 207 (474)
.++..++-++|.... ..||.-.+++...+ -..|-..+.++..+||+.++....-+.++|.+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 456777777777554 44777667765522 2789999999999999998866555555665544
No 418
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.81 E-value=36 Score=30.56 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=26.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEeee
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 281 (474)
..+.|.||||.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3679999999999999999998655565555544
No 419
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.65 E-value=66 Score=28.66 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=25.4
Q ss_pred ceEEccCCCCCCCHHHHHHHHhccCCeeEeEee
Q 011975 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG 280 (474)
Q Consensus 248 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 280 (474)
..+.|+||||.++..-|..++.. ..+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 36899999999999999999987 555554443
No 420
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.43 E-value=1e+02 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.6
Q ss_pred CeeEeEeeecCCCCCcccEEEEEEcC
Q 011975 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (474)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (474)
.|+.|+|.+-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47777776665678899999999974
Done!