Query 011977
Match_columns 474
No_of_seqs 240 out of 2104
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.6E-58 7.7E-63 448.1 56.3 439 23-465 12-454 (455)
2 PRK10189 MATE family multidrug 100.0 2.1E-54 4.6E-59 425.7 57.4 441 25-471 26-476 (478)
3 PRK00187 multidrug efflux prot 100.0 9.3E-53 2E-57 414.2 56.8 431 23-456 5-446 (464)
4 PRK01766 multidrug efflux prot 100.0 1.4E-50 3E-55 400.3 56.9 432 24-458 8-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 2.3E-50 4.9E-55 393.5 54.4 424 24-458 5-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 2.3E-50 4.9E-55 396.7 54.0 425 24-453 8-435 (453)
7 TIGR01695 mviN integral membra 100.0 1.7E-37 3.7E-42 311.7 51.4 413 30-454 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.2E-37 4.8E-42 309.9 49.0 415 31-454 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 1.5E-37 3.3E-42 296.6 43.8 338 36-376 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 1.8E-35 3.9E-40 289.1 46.8 405 30-453 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 9.7E-37 2.1E-41 294.7 33.3 444 24-469 24-467 (473)
12 PF03023 MVIN: MviN-like prote 100.0 8.1E-29 1.8E-33 242.2 50.3 386 58-454 5-403 (451)
13 PRK10459 colanic acid exporter 100.0 2.8E-28 6.1E-33 243.9 48.2 399 26-453 3-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 2.1E-27 4.6E-32 227.7 51.4 421 27-455 6-438 (518)
15 COG2244 RfbX Membrane protein 100.0 5E-26 1.1E-30 227.2 41.9 391 25-437 3-395 (480)
16 PRK10367 DNA-damage-inducible 99.9 3.2E-21 6.9E-26 188.6 27.9 207 245-453 5-211 (441)
17 COG0534 NorM Na+-driven multid 99.9 4.4E-21 9.4E-26 187.7 28.8 209 244-455 12-222 (455)
18 PRK00187 multidrug efflux prot 99.9 3.9E-21 8.5E-26 189.8 27.9 207 22-229 230-443 (464)
19 PRK10189 MATE family multidrug 99.9 4.5E-21 9.8E-26 189.4 27.8 205 245-452 25-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.9E-21 6.3E-26 190.4 25.0 207 245-454 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 3.2E-20 6.9E-25 183.9 29.1 209 244-455 7-219 (456)
22 TIGR01695 mviN integral membra 99.8 4.7E-18 1E-22 170.9 29.7 229 23-261 218-451 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 6.4E-17 1.4E-21 149.2 32.3 270 31-317 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 5.4E-17 1.2E-21 154.9 26.4 194 257-453 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 1.4E-15 3E-20 149.2 31.2 207 24-232 194-405 (451)
26 PF01554 MatE: MatE; InterPro 99.8 1.2E-18 2.6E-23 147.3 8.1 162 257-420 1-162 (162)
27 TIGR02900 spore_V_B stage V sp 99.8 2.9E-16 6.4E-21 157.4 25.3 204 22-230 219-434 (488)
28 PF01554 MatE: MatE; InterPro 99.7 3.2E-18 7E-23 144.6 5.2 160 36-196 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 6.1E-14 1.3E-18 135.5 34.1 234 24-266 228-466 (518)
30 PRK10459 colanic acid exporter 99.7 1.5E-13 3.3E-18 137.8 34.2 200 24-229 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.7 2.8E-13 6E-18 123.3 31.0 247 46-316 2-250 (251)
32 PRK15099 O-antigen translocase 99.7 2.9E-14 6.2E-19 139.7 25.5 201 21-228 208-410 (416)
33 COG2244 RfbX Membrane protein 99.6 3.2E-13 7E-18 135.0 26.0 197 23-226 208-406 (480)
34 KOG1347 Uncharacterized membra 99.3 2E-10 4.4E-15 112.0 21.2 205 245-453 24-229 (473)
35 PF04506 Rft-1: Rft protein; 99.3 3.1E-08 6.8E-13 98.2 33.0 421 31-454 4-470 (549)
36 PF07260 ANKH: Progressive ank 99.1 7.7E-07 1.7E-11 79.2 30.0 313 26-349 9-343 (345)
37 KOG2864 Nuclear division RFT1 99.0 1.4E-05 3E-10 74.6 35.4 416 26-454 6-449 (530)
38 PF04506 Rft-1: Rft protein; 98.5 2.6E-05 5.7E-10 77.7 22.1 203 27-230 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 2.8E-05 6.1E-10 64.0 17.7 80 150-231 2-81 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 1E-05 2.2E-10 66.6 9.6 79 373-454 2-80 (146)
41 PF01943 Polysacc_synt: Polysa 98.2 0.00054 1.2E-08 62.8 21.4 182 258-454 8-191 (273)
42 PF13440 Polysacc_synt_3: Poly 97.9 0.0036 7.7E-08 56.6 21.3 161 274-452 10-171 (251)
43 KOG2864 Nuclear division RFT1 97.9 0.0014 3E-08 61.6 18.0 203 28-232 239-451 (530)
44 PF07260 ANKH: Progressive ank 97.7 0.035 7.6E-07 50.2 23.2 159 245-409 7-168 (345)
45 COG4267 Predicted membrane pro 97.5 0.092 2E-06 48.6 38.0 342 72-440 68-432 (467)
46 COG4267 Predicted membrane pro 66.9 1.2E+02 0.0026 28.9 21.1 135 300-451 74-208 (467)
47 PF04505 Dispanin: Interferon- 66.0 36 0.00078 24.5 6.5 40 304-343 34-73 (82)
48 PF05975 EcsB: Bacterial ABC t 59.4 1.8E+02 0.0038 28.3 16.8 37 322-358 89-125 (386)
49 PF14184 YrvL: Regulatory prot 45.8 1.5E+02 0.0033 23.6 12.6 109 110-220 6-115 (132)
50 PRK03612 spermidine synthase; 32.9 5.4E+02 0.012 26.2 22.3 49 178-228 149-198 (521)
51 KOG2468 Dolichol kinase [Lipid 32.5 4E+02 0.0087 26.2 9.2 83 255-346 379-461 (510)
52 PF05313 Pox_P21: Poxvirus P21 30.6 2.4E+02 0.0052 23.7 6.5 26 204-229 135-160 (189)
53 PF05975 EcsB: Bacterial ABC t 29.0 5.4E+02 0.012 24.9 15.9 40 100-139 89-130 (386)
54 TIGR00383 corA magnesium Mg(2+ 27.7 2E+02 0.0044 26.8 6.8 51 404-456 260-317 (318)
55 PRK09546 zntB zinc transporter 26.4 1.9E+02 0.0042 27.1 6.3 51 404-456 266-323 (324)
56 PTZ00370 STEVOR; Provisional 25.0 1.2E+02 0.0026 27.6 4.3 33 430-462 257-292 (296)
57 PF01102 Glycophorin_A: Glycop 23.7 99 0.0022 24.2 3.1 23 207-229 68-90 (122)
58 PRK10739 putative antibiotic t 21.5 5.3E+02 0.011 22.2 8.9 60 311-374 21-80 (197)
59 PRK10921 twin-arginine protein 21.3 6.2E+02 0.013 22.9 12.1 24 242-265 101-124 (258)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.6e-58 Score=448.10 Aligned_cols=439 Identities=25% Similarity=0.347 Sum_probs=417.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
.++..|+++++++|.+++++.+.+++.+|+.++||+|++++++.++++++..+. ..+..|++.|.++.+||++|++|++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (474)
++++..++++.++++.+++..++ ..+.++++.+++.++++.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888776 99999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHhHHHHHHHHhhH
Q 011977 182 SACATLCFHILLCWYLVFK-AN-FRIVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSDIFSCIKEFFSFALPT 258 (474)
Q Consensus 182 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~l~~~~p~ 258 (474)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++.+++++++++ ......+..+++++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999987765 23332344456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011977 259 VVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAV 338 (474)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (474)
.+++......+...+.+++++| ++.+|+|+++.++.++..+++.|++++..|.+++++|+||+|++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHH
Q 011977 339 TEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLA 418 (474)
Q Consensus 339 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~ 418 (474)
.++...++.++++++++..+|++|+|+.+.+..++++..+..++++.+....+.+||.||++.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhh
Q 011977 419 SVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFH 465 (474)
Q Consensus 419 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (474)
+++.+.. +|..|+|++...++.++.+...+++++++|++...++++
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAAS 454 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 9998765 899999999999999999999999999999887765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.1e-54 Score=425.68 Aligned_cols=441 Identities=16% Similarity=0.176 Sum_probs=405.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchH
Q 011977 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (474)
Q Consensus 25 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (474)
+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++.+.++.++|++|++|++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 5699999999999999999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG--QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (474)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (474)
++..+.++.++...+++.+++ ..+.+++..++. .|+|+.+.+.+|+++..++.|+..+..+.++.+|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988876 778899999984 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccc--ccccccC-CChhhHHhHHHHHHH
Q 011977 182 SACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSS--CEKTRVF-IFSDIFSCIKEFFSF 254 (474)
Q Consensus 182 ~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~k~~l~~ 254 (474)
.+++..++|++++++++++ +++|+.|+++|+.+++.+..++..+++.++++ .+.++++ +++.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 9999999999999999975 47999999999999999998887776654322 2222222 223467889999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011977 255 ALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVM 334 (474)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 334 (474)
|+|..++.........+.+.+++++| ++++|+++++.++.++..++..|++++..|.+++++|++|.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998888888889888 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHh
Q 011977 335 VLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVG 414 (474)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 414 (474)
++++.++..++++++.+++++..+|++|+|+.+.+..++++.++..++++.+....+.+++.||++.++++++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhhcccc
Q 011977 415 IPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFNKC 471 (474)
Q Consensus 415 l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474)
+|+.++++...++|+.|+|++..+++.+..++..+++++++|++.. +.++-|+|
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~---~~~~~~~~ 476 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY---PRPEPQKC 476 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC---CCCCcccc
Confidence 9999999887789999999999999999999999999999998843 33344555
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=9.3e-53 Score=414.16 Aligned_cols=431 Identities=22% Similarity=0.314 Sum_probs=394.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
+++..|++++.++|.+++++.+.+.+.+|+.+++|+|++++++++++.++.++. ..+..|++.+..+.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 356899999999999999999999999999999999999999999999999998 8888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
++++..+.++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999887776557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-ccCCChhhHHhHHHHHHHHh
Q 011977 183 ACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCE-KT-RVFIFSDIFSCIKEFFSFAL 256 (474)
Q Consensus 183 ~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~~l~~~~ 256 (474)
++++.++|+++|++++++ +++|+.|+++|+.+++.+..+...++++++++.+ .+ +.+..+++++.+|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 999999999999999975 3589999999999999888877766666543221 11 11222445788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (474)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (474)
|.++++..+.....++..+++++| ++++++++++.++..+..++..+++++..+.++|++|++|.|++++..+.+..+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCC--ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHH
Q 011977 337 AVTEAVIVGTILFCCRYVLAYAFNS--DK---DVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYY 411 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 411 (474)
+..++++++++++++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.||++.+++.++.+.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999974 44 678899999999999999999999999999999999999999999988
Q ss_pred HHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977 412 IVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (474)
Q Consensus 412 ~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 456 (474)
++++|+++++.+.+++|+.|+|+++.+++.+..++...+++.++|
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~ 446 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTA 446 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888999999999999999998887776654433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.4e-50 Score=400.32 Aligned_cols=432 Identities=22% Similarity=0.350 Sum_probs=400.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.++|++|++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 56899999999999999999999999999999999999999999999998777 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
.++..+.++.+++..+++.+++ ..+.+++..+++.|++..+.+.+|+++.+++.++..+..++++.+|+.|+++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999888776 777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccccCCChhhHHhHHHHHHHHh
Q 011977 183 ACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCE--KTRVFIFSDIFSCIKEFFSFAL 256 (474)
Q Consensus 183 ~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~l~~~~ 256 (474)
+.++.++|++++++++++ +++|+.|+++++.+++.+..++..++++++++.+ ..+.++.+.+++.+|++++.++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~ 246 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL 246 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence 999999999999999864 4689999999999999999999888887654321 1122223345778999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (474)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (474)
|.++++..+...+.++..+++++| ++++++++++.++.++..++..+++.+..+.+++++|+||++++++..+.+.++
T Consensus 247 P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~ 324 (456)
T PRK01766 247 PIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAV 324 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHH
Q 011977 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 416 (474)
++.++++.+++++.+++++..+|++|+|+.+.+..++++..+..++++++....+++++.||++.++..++.+.+++.+|
T Consensus 325 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~ 404 (456)
T PRK01766 325 GLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLP 404 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 011977 417 LASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 458 (474)
Q Consensus 417 ~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
..+++...+++|..|+|+++.+++.+..++..+++++.+|+.
T Consensus 405 ~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 405 LGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888899999999999999999999988888877665
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.3e-50 Score=393.46 Aligned_cols=424 Identities=17% Similarity=0.158 Sum_probs=375.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
.+..|+++++++|.+++++++.+.+.+|+.++|++ |++++++++++.++.++. ..+..+++.+..+.+||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34788999999999999999999999999999998 788999999999999998 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (474)
++++..++++.++++.+++..++ ..+.+++..+++.|+++.+.+.+|+++..++.|+..+..+..+.+|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988876 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCChhhHHhHHHHHHHHhhHHH
Q 011977 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEK-TRVFIFSDIFSCIKEFFSFALPTVV 260 (474)
Q Consensus 182 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~l~~~~p~~~ 260 (474)
.++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++++.+. +.+.++...++..|++++.|.|..+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999999888999999999999999998888777765432221 1111221113468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 011977 261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTE 340 (474)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (474)
++......+.+.+.+++++| ++++|+|+++.++.++.+++..|++++..|.+++++|+||+|++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---chhhHHHHHHHHHHHhHHH
Q 011977 341 AVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGW---QHIGAYVNLGAYYIVGIPL 417 (474)
Q Consensus 341 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~l~~ 417 (474)
+.+++++++.+++++..+|++|+|+.+.+.+++++.++..+...........+++.+| ++.++.+++.+.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433344444555666665 9999999998865422211
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 011977 418 ASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 458 (474)
Q Consensus 418 ~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
+++|..|+|++..+++.+..++..++++++ |++
T Consensus 402 -------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 247999999999999999999988877665 854
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.3e-50 Score=396.73 Aligned_cols=425 Identities=15% Similarity=0.142 Sum_probs=389.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
++..|++++.++|.+++++.+.+++.+|+.+++++ |+++++++++++++..+. ..+..+++.+.++.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 35789999999999999999999999999999996 999999999999999988 8888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (474)
+.++..+.++.++.+.+++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988876 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHH
Q 011977 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVM 261 (474)
Q Consensus 182 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~ 261 (474)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++.+++++++++..+...+..+.+++..|++++.|.|..++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999998888776544322111122234678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011977 262 FCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEA 341 (474)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (474)
.....+...+.+.+.+++| +++++|+++++.++..+..++..+++.+..|.+++++|+||+|++++..+.+.++++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~g-~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYG-SALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888887 346899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHH
Q 011977 342 VIVGTILFCCRYVLAYAFNS-DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASV 420 (474)
Q Consensus 342 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~ 420 (474)
++.++++..+++++..+|++ |||+.+.+.+++++.+++.+++++.....+.+++.||++.++..++.. +++++|..++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999887 5789999999
Q ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 421 LCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 421 l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
++.. +|+.|+|+++.+++.+..+...+++++
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9653 699999999999999988877666644
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.7e-37 Score=311.74 Aligned_cols=413 Identities=14% Similarity=0.057 Sum_probs=349.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHhCCCccchHHH
Q 011977 30 LSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTL-ASVAIATSFTNVTGIIPL-FGFACALETLCGQAYGAKQYQQIGT 106 (474)
Q Consensus 30 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~a~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 106 (474)
+.|.+.-..++++.+.+.+++|..+++| +|++++ ++++.+.++......... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688889999999999999999999999 699999 899999999877623333 468888888777664332 56676
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 107 YTYSAMFFCIAICF-PISVL-WIFMDKVLILL--GQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 107 ~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
.+.++.......+. +.+++ ..+.+++..++ +.+++..+.+.+|+++..++.++..+..+.++.+|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 34444 77788888877 4467777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhH--HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHH
Q 011977 183 ACATLCFHILLCWYLVFKANFRIVGAA--LAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVV 260 (474)
Q Consensus 183 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~ 260 (474)
+++..+++++...++. +++|..|++ +++++++.+..++.+++.+|++. +.+ .+. +.+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcC-CCCChhHHHHHHHHHHHHH
Confidence 9998888776544444 568999988 99999999998888777765431 111 111 2245678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhh-hHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011977 261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVT 339 (474)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (474)
++....+...+|+.+.+.++ ++++++|+.+.++.++... +..+++++..|.++++++++|.+++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998877766 7789999999999988765 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhH
Q 011977 340 EAVIVGTILFCCRYVLAYAFNS----DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGI 415 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l 415 (474)
++.|+++++..+++++..+|.+ |+|.++.+..++++++++.++.+++....+.+++.||++.+++.++.+ .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999976 567889999999999999999999999999999999999999999998 58899
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 416 PLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 416 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
++++++. +.+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999884 347999999999999999988887777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.2e-37 Score=309.92 Aligned_cols=415 Identities=15% Similarity=0.117 Sum_probs=351.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHH
Q 011977 31 SFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTY 109 (474)
Q Consensus 31 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 109 (474)
.|.+.|.+++++...+.+++|+.+++| +|++++|+++.+.++..+.......|++.+..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 5999999999999999887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011977 110 SAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLC 188 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 188 (474)
.++.+.++.+++.+++ ..+.+++...+..+++. ..++++..+..++..+....++.+|+.+|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888876 66777777766666543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHhHHHHHHHHhhHHHH
Q 011977 189 FHILLCWYLVFK-----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKT--RVFIFSDIFSCIKEFFSFALPTVVM 261 (474)
Q Consensus 189 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~ 261 (474)
+++.++..++.. .++++.|+++++.+++.+..++..++.+|+++.+.+ +.+.++.+++.+|+++++|+|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776655432 246788889999999999998887776554432211 1122344577899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----C-hh---hHHHHH-HHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011977 262 FCLEWWSFEILILLSGLLP----N-SK---LETSVL-SICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACV 332 (474)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~----~-~~---~~~~~~-~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~ 332 (474)
+........+|+.++++.. . .. ...+.| +++.++..+...+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988886531 0 01 233444 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHH
Q 011977 333 VMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYI 412 (474)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 412 (474)
..++...++.|.++++..+++++..++.++++ +.++++++++..++.+++....+.+++.||+|..++.+..+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 57889999999999999999999999999999999999998 58
Q ss_pred HhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 413 VGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 413 ~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
+++++++.+...+++|+.|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888544778999999999999999998888777654
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.5e-37 Score=296.60 Aligned_cols=338 Identities=27% Similarity=0.411 Sum_probs=311.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHHHHHHHH
Q 011977 36 PMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFC 115 (474)
Q Consensus 36 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 115 (474)
|.+++++...+...+|+.+++++|++++|+++.+.++..+. ..+..|++++..+.++++.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011977 116 IAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLC 194 (474)
Q Consensus 116 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 194 (474)
...+++.+++ ..+.+++..+++.|++..+.+.+++++..+..++.....+..+.+|+.||++.++..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998886 888999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-ccC-CccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 011977 195 WYLVF-KAN-FRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEIL 272 (474)
Q Consensus 195 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~ 272 (474)
+.+++ .++ +|+.|+++++.+++++..++..++.+|+++.+.++++..+.+++..|+++++|+|..++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 567 7899999999999999999888887764444333223334457789999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 273 ILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCR 352 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
+.+++.++ ++++++|+++.++.++..+++.+++++..|.++++++++|.|+.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHH
Q 011977 353 YVLAYAFNSDKDVVNYVSELVPLL 376 (474)
Q Consensus 353 ~~i~~l~~~~~~~~~~~~~~l~i~ 376 (474)
+++.++|++|||+.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999988888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.8e-35 Score=289.08 Aligned_cols=405 Identities=11% Similarity=0.014 Sum_probs=345.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHH
Q 011977 30 LSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYT 108 (474)
Q Consensus 30 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 108 (474)
+.|.+.....+.+...+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5688888999999999999999999999 59999999999999999874555889999999999988 67788899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011977 109 YSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL 187 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 187 (474)
++++.+.+..+++.+++ ..+.+++...+..+++. ..+..+..+..++..+.....+.+|+.+|++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 78888998878766653 24455666666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHH
Q 011977 188 CFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWW 267 (474)
Q Consensus 188 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~ 267 (474)
++|+.+ .++... ..|+.|+++|+++++.+..+..+++++|+++.+.++.++ +.+++.+|+++++|.|..+++...++
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444432 249999999999999999888777776554422221122 33578899999999999999999999
Q ss_pred HHHHHHHHHh-cCCChhhHHHHHHHHHHHhHH-HhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011977 268 SFEILILLSG-LLPNSKLETSVLSICLTISST-HYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVG 345 (474)
Q Consensus 268 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (474)
....++.+++ .+| ++++|.|+.+.|+.+. ...+..+++++..|.++++ +|.|+.++..++..+....+..+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999885 777 8899999999999874 5889999999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHHc
Q 011977 346 TILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVL 425 (474)
Q Consensus 346 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 425 (474)
+.++++++++..++.+|+ ++++.+++++++++.++...+...+..+.+.++++.....++.. .++++|+++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999976 77789999999999999999888888888888888888877776 688999999984 5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 426 NLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 426 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
.+|..|+++++.+++.+......+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999877655543
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=9.7e-37 Score=294.69 Aligned_cols=444 Identities=46% Similarity=0.777 Sum_probs=422.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
+.+.|++++++.|..+..+.+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 56899999999999999999999999999999999999999999999999987788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 011977 104 IGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSA 183 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (474)
.......+..+....+++.+.++.+.+++...+++|+++...+..|.+...+..+.+........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHH
Q 011977 184 CATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFC 263 (474)
Q Consensus 184 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 263 (474)
....++|+.+++++++.+++|..|++++..+++.+.......+..... ....|..+..+ ++.+++++++++|..++..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999998887554 55666666666 8899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011977 264 LEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVI 343 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (474)
.+++.+.+..+..+.+++...+++..++..++....++.+.+++.+...++++.+|+++++++|...+.....++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHH
Q 011977 344 VGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCF 423 (474)
Q Consensus 344 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~ 423 (474)
.+..+....+.+..+|++|+|+.+...+..+++++..++++.+.+..+..++.|.++...++++....++++|+...+..
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HcCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhhcc
Q 011977 424 VLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQVSSSFHSFFN 469 (474)
Q Consensus 424 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (474)
..++|..|.|.++..+..+......+...+.+|++..++++++...
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~ 467 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIA 467 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHh
Confidence 7889999999999999888888888888999999999988876543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.1e-29 Score=242.23 Aligned_cols=386 Identities=15% Similarity=0.128 Sum_probs=335.1
Q ss_pred cCh-HHHHHHHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 011977 58 LGE-LTLASVAIATSFTNVTGIIPL-FGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLI 134 (474)
Q Consensus 58 lg~-~~~~~~~~a~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 134 (474)
+|. ++..++..+.++..++...+. .+++.+..|..++.. ++++++.++..+....+.....++++++ .++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 564 466789999999998833444 468999999999998 7888999999999888888888888877 888999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhccCCc---cchhH
Q 011977 135 LL--GQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR---IVGAA 209 (474)
Q Consensus 135 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 209 (474)
.+ +.|++..+.+.+.+++..+..++..+..+..+.+|+++|...+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 88 457788899999999999999999999999999999999999998888887776655444443 356 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 011977 210 LAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVL 289 (474)
Q Consensus 210 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (474)
++..++..+..++.+...+|.+...+...++ +.+..|++++...|..+.....++...+|+.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 9999999999988888887654321111111 2345899999999999999999999999999999988 6689999
Q ss_pred HHHHHHhHHHhh-hHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC----Cchh
Q 011977 290 SICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN----SDKD 364 (474)
Q Consensus 290 ~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 364 (474)
+.+.++.++... +..+++++..|.++++..++|.++.++..++.++....+.+|.++++..+++++++++. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 999999999774 67799999999999999999999999999999999999999999999999999999975 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 011977 365 VVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQA 444 (474)
Q Consensus 365 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~ 444 (474)
..+.....+++++++.++.++...+...+++.+|+|.+++.+..+ .++++.+++.+ .+.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998 68999999888 456899999999999999999
Q ss_pred HHHHHHHhhc
Q 011977 445 IVLAIITVTT 454 (474)
Q Consensus 445 ~~~~~~~~~~ 454 (474)
++.++..+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888877666
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=2.8e-28 Score=243.93 Aligned_cols=399 Identities=11% Similarity=0.060 Sum_probs=321.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchH
Q 011977 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (474)
Q Consensus 26 ~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (474)
..++..+.+....++++...+.+++...+++| +||+++|.++.+..+..+.......|++.+... . +|++
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~-- 73 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS-- 73 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--
Confidence 34678888999999999999999999999999 599999999999999998866777888887532 1 1211
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 011977 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSA 183 (474)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (474)
++..++.+.+....+++..++ ..+.+++...+ ++++. ...+.+..+..++..+.....+.+|+.++.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 234556666777777766665 45555555444 44443 3456777777788888888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHH
Q 011977 184 CATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFC 263 (474)
Q Consensus 184 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 263 (474)
.+..+...+..+.+.. .++|+.+..++..+++.+..+...+..++ +. ++++ +.+++..|++++++.|...++.
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~-~~~~----~~~~~~~k~ll~~~~~~~~~~~ 221 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IY-RPAL----HFSLASVKPNLSFGAWQTAERI 221 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cC-Cccc----eecHHHHHHHHhhhHHHHHHHH
Confidence 8888887777766655 47899999999999988877655433322 11 1111 1235678999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhh-hHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 011977 264 LEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAV 342 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (474)
...+...+|+.+++.+. |++++|.|+.++++.+.... +...++.+..|..++. ++|.++.++.+++..++...+++
T Consensus 222 ~~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~ 298 (492)
T PRK10459 222 INYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINF 298 (492)
T ss_pred HHHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998775 48899999999999887554 4555788999999885 57889999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHH
Q 011977 343 IVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLC 422 (474)
Q Consensus 343 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~ 422 (474)
|+++++.++++++..++.+|+ ++++...++++++..++..+..+....+++.||+|..++.++.. .++.+|..+.+.
T Consensus 299 p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~ 375 (492)
T PRK10459 299 PLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG 375 (492)
T ss_pred HHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999988765 88899999999999999999999999999999999999999887 577888777774
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 423 FVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 423 ~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
+.+|..|+++++.+++.+......+..+|
T Consensus 376 --~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 --QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999988877776634
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2.1e-27 Score=227.73 Aligned_cols=421 Identities=14% Similarity=0.064 Sum_probs=350.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-cCh-HHHHHHHHHHHHHHHHHHHHHHh-HHHhHHHHHHHHhCCCccch
Q 011977 27 LKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGE-LTLASVAIATSFTNVTGIIPLFG-FACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 27 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~a~~~~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~ 103 (474)
.+.++|-++-.....+++.+.+++...+++. +|+ ....++..|.++.+++.-.+..| ++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3456666667777778888888888888998 587 56789999999999885555554 79999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 011977 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQD---PEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL 179 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (474)
.++.............+.++++ .++.+++++....+ ++....+....++..+..++..+.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7776666665666677777776 77777777455322 3333367888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHH
Q 011977 180 FLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTV 259 (474)
Q Consensus 180 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~ 259 (474)
....+..++.-+.....+....+....+.+|++.++-++..++.+..++|.+-..+....++ -+..|++.+.-.|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHH
Confidence 99888888777755555544322246788999999999999999999987653322222222 256899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHh-hhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011977 260 VMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAV 338 (474)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (474)
+.....++...+|+.+.+.+. +-+++.+..+.|+.++.. .+..+++++..|.++++..++|.++.++..++++++.+
T Consensus 243 l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999987 558999999999999976 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHh
Q 011977 339 TEAVIVGTILFCCRYVLAYAFNS----DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVG 414 (474)
Q Consensus 339 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 414 (474)
.+.+|.++++.++++|++.++.. +++..+...+.+..+.++.++..+...+...+++.+|+|.++++++++ .+++
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHH
Confidence 99999999999999999998732 456678899999999999999999999999999999999999999998 6899
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011977 415 IPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTN 455 (474)
Q Consensus 415 l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 455 (474)
+.+++.+ .+.+|..|++++..++..+...+.++..+|+.
T Consensus 400 ~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 400 ILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999666 55689999999999998888887777666653
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=5e-26 Score=227.16 Aligned_cols=391 Identities=17% Similarity=0.168 Sum_probs=311.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 25 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 356788999999999999999999999999999 5999999999999999998666779999999999999876555554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 104 IGTY-TYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
.... ...........+.+.........+. ++ .....+.......+.........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 3333333333333333322222221 12 23445677889999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHH
Q 011977 183 ACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMF 262 (474)
Q Consensus 183 ~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~ 262 (474)
...+ ..-......+.. .......++...+.........++.+++++...+ .. .+..++..|+++++++|....+
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PI-LRFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cc-cCchhHHHHHHHHHhhHHHHHH
Confidence 4444 111222222221 3455666777777777666666666422221111 11 1114788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 011977 263 CLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAV 342 (474)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (474)
....+....|+.+++.+- +++++|.|+.+.++......+..+++.+..|.+++.+.++|.++.++..+++.++...+++
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999775 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHH
Q 011977 343 IVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLC 422 (474)
Q Consensus 343 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~ 422 (474)
|..+++..+++++..++.+++ +..+...++++++..++.++.......+++.|+++...+.+..+ .+.++.+++.+
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH-
Confidence 999999999999999988866 55689999999999999999999999999999999999999998 58889999888
Q ss_pred HHcCCchhHHHHHHH
Q 011977 423 FVLNLRGKGLWIGIM 437 (474)
Q Consensus 423 ~~~~~g~~G~~~a~~ 437 (474)
++++|..|+..++.
T Consensus 382 -i~~~g~~g~~~a~~ 395 (480)
T COG2244 382 -IPRFGLIGAAIATA 395 (480)
T ss_pred -HHhhhhhhHHHHHH
Confidence 55679999998883
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=3.2e-21 Score=188.65 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=193.2
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChH
Q 011977 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQ 324 (474)
Q Consensus 245 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 324 (474)
.+..|+++++++|.+++++.......+|+.++++++ +++++++.+++.++.++...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345789999999999999999999999999999985 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 011977 325 AAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAY 404 (474)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 404 (474)
++++..+.++.++...++++.+....+.+++..+++.|+|+.+.+.+++++..++.++..+.......+++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 405 VNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 405 ~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
.++++ .++++++++++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5889999999988778999999999999999988776555544
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=4.4e-21 Score=187.71 Aligned_cols=209 Identities=19% Similarity=0.245 Sum_probs=200.0
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 244 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 244 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
+++..|+++++++|.+++++.......+|+.++++++ ++++++-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4668899999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 011977 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (474)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (474)
+++++..+.+....+.++++..+....+++++..++++++|+.+.+.+|+++..++.++..++....+.+++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-cC-CchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011977 404 YVNLGAYYIVGIPLASVLCFV-LN-LRGKGLWIGIMTGSAVQAIVLAIITVTTN 455 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 455 (474)
++++.+ .+.|+.+++++.+. .+ +|+.|+++|+.+++.+..++..++..+++
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998 69999999999877 35 89999999999999999999888777765
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=3.9e-21 Score=189.76 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCcc
Q 011977 22 AFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY 101 (474)
Q Consensus 22 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (474)
.+++..|+++|.++|.+++++.+.....+|+.+++++|+++++++++++++..+. ..+..|++.+.++.++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3467899999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 011977 102 QQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQ--DP---EIATEACNFSISLIPALLAFAVLRPLIHNLQSQSL 175 (474)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (474)
|++++..+.++.++...+++.+++ ..+.+++.+.+.. |+ ++.+.+..|+++.+++.++..++.++.+.+||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988876 8889999998853 33 68889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011977 176 ILPLFLSACATL-CFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (474)
Q Consensus 176 ~~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 229 (474)
++.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....+++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 799999999998788999999999999999998777666653
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=4.5e-21 Score=189.37 Aligned_cols=205 Identities=17% Similarity=0.170 Sum_probs=191.3
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChH
Q 011977 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQ 324 (474)
Q Consensus 245 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 324 (474)
.+..|++++.++|.+++++.......+|+.+++++| ++++|+++++.++..+...+..+++++..+.++|++|++|+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 445899999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 011977 325 AAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN--SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 402 (474)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 402 (474)
++++..+.+..+++.++++.+++.+.+++++..++. .|+|+.+.+.+++++..++.++..+.....+.+++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----cCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011977 403 AYVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITV 452 (474)
Q Consensus 403 ~~~~~~~~~~~~l~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 452 (474)
+.+++.+ .++++++++.+... +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 68899999988754 4789999999999999998877655443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=2.9e-21 Score=190.37 Aligned_cols=207 Identities=13% Similarity=0.107 Sum_probs=194.8
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLL-PNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 245 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
++..|++++.++|.+++++...+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 55779999999999999999999999999999996 6 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 011977 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (474)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (474)
|++++..+.++.++..+++++++++..+++++..+++.|+|+.+.+.+++++..++.++..+.......+++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 404 YVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
..++.+ .++++++++++...+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998 58999999999877789999999999999999988866665543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=3.2e-20 Score=183.86 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=193.7
Q ss_pred hHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 244 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 244 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
.++.+|+++++++|.++++....+...+|..+++++| ++++++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3677999999999999999999999999999999997 78899999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 011977 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (474)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (474)
|+.++..+.++.+.+.+++++++.++.+++++..+++.|+|+.+.+..++++.+++.++..+.....+.+++.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----cCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011977 404 YVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITVTTN 455 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 455 (474)
+.++.+ .++++++++.+.+. +++|+.|+++++.+++.+..++..++.++++
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999998 58899999888642 4689999999999999999888776665543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.83 E-value=4.7e-18 Score=170.92 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
+++..|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++.++....+..+++.+..|.++++.|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34688999999999999999999999999988666799999999999999988734567889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQ----DPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLIL 177 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (474)
+.++..+.+.......+.+..++ ..+++++..++.+ |++..+.+.+++++.+++.++..+..+..+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998886 8889999988865 557788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhh
Q 011977 178 PLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALP 257 (474)
Q Consensus 178 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p 257 (474)
.++..+....++|++++++++. .+|..|+++++.+++.+...+..++.+|+.+.. +..+..+++.|...+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a 447 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLKGI--------LPFGVLKVLAKLVIA 447 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC--------CchHHHHHHHHHHHH
Confidence 9999999999999999998875 489999999999999999998888876542210 113345556665554
Q ss_pred HHHH
Q 011977 258 TVVM 261 (474)
Q Consensus 258 ~~~~ 261 (474)
..+.
T Consensus 448 s~~m 451 (502)
T TIGR01695 448 SAII 451 (502)
T ss_pred HHHH
Confidence 4443
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=6.4e-17 Score=149.20 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=207.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHH
Q 011977 31 SFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTY 109 (474)
Q Consensus 31 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 109 (474)
.|.+.....+++...+.+++...+++| +|++++|.++.+.++..+.......|++.+..+..+++..+ +++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577788899999999999999999999 59999999999999999885566899999999998887533 344445554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011977 110 SAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCF 189 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 189 (474)
.......+.+++...... +......++ .. ..+........++..........+++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL----IASFFGNPS-LS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCch-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333222 222333332 21 1222222222257788888999999999999999999999988
Q ss_pred HHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHH
Q 011977 190 HILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSF 269 (474)
Q Consensus 190 ~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~ 269 (474)
..++...++.. +.+..+..++..++..+...+..++.+|+.+ .+.+..+++..|++++++.|..+++....+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666654 4458899999999999998888888875443 11223337789999999999999999999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHh
Q 011977 270 EILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNE 317 (474)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~ 317 (474)
..|.++++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999886 599999999999999999999999999999999985
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=5.4e-17 Score=154.91 Aligned_cols=194 Identities=21% Similarity=0.221 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (474)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (474)
|.++++....+...+|+.++++++ ++++++|+++.++..+...+..+++++..|.+++++|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778889999999999999999988 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHH
Q 011977 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 416 (474)
....+++.+++++.+++++..+++.|++..+.+..+++++++..++.++.......+++.||.+...+.++.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888889999999999999999999999999999999999999999998 578889
Q ss_pred HHHHHHH-HcC-CchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 417 LASVLCF-VLN-LRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 417 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
.++.+.+ ..+ +|..|+++++.++..+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888865 445 679999999999999988887766654
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.76 E-value=1.4e-15 Score=149.20 Aligned_cols=207 Identities=17% Similarity=0.147 Sum_probs=192.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
++..|++++...|..++....++...+|+.+.+.+++.++++++.++++.++....+..++++...|..++...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45789999999999999999999999999999999999999999999999998678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 011977 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG----QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (474)
.++.+++++.....+.++.++. ...++++++.+. .+.+..+.....+.+.+++.|+..+...+...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999986 899999998774 35666788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011977 179 LFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSS 232 (474)
Q Consensus 179 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 232 (474)
++..++++.++|++++.++.. .+|+.|.++++.++..+...+..+.++|+.+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999988885 4999999999999999999999998876544
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=1.2e-18 Score=147.26 Aligned_cols=162 Identities=23% Similarity=0.419 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (474)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (474)
|.+++++.......++..+++++| ++++++++++.++.++...+..+++++..+.+++++|++|+|++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999997 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHH
Q 011977 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 416 (474)
...+++++++.+..+++++..+|++|+|+.+.+.+++++..+..++..+.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011977 417 LASV 420 (474)
Q Consensus 417 ~~~~ 420 (474)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=2.9e-16 Score=157.39 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch---------HHHHHH-HHHHHHHHHHHHHHHHhHHHhHHH
Q 011977 22 AFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GE---------LTLASV-AIATSFTNVTGIIPLFGFACALET 90 (474)
Q Consensus 22 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~---------~~~~~~-~~a~~~~~~~~~~~~~gl~~~~~~ 90 (474)
.+++..|++++.+.|.+++++...+...+|+.++++. ++ +.+|.+ +.+.++..+. ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3466899999999999999999999999999999873 22 223333 3566777777 7778899999999
Q ss_pred HHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011977 91 LCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHN 169 (474)
Q Consensus 91 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (474)
.++++.|++|+++.++..++...+....+.+..+. ..++++++.++..++ ++.+++++.++..++........+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876 888999998887543 3567899999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011977 170 LQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (474)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 230 (474)
+++.||++.+++.+++..++|++++++++..+.+|+.|+++++.+++.+......+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888754569999999999999999999988888643
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=3.2e-18 Score=144.60 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHHHHHHHH
Q 011977 36 PMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFC 115 (474)
Q Consensus 36 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 115 (474)
|..++++...+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.++|++|++|+|+.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 011977 116 IAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL-CFHILL 193 (474)
Q Consensus 116 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 193 (474)
.+.+++.+++ ..+.+++..+++.|+++.+.+.+|+++..++.++........+.+|+.||++.++..+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999987 88999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHH
Q 011977 194 CWY 196 (474)
Q Consensus 194 ~~~ 196 (474)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=6.1e-14 Score=135.46 Aligned_cols=234 Identities=16% Similarity=0.108 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
.+..|++.+...|..++...+++...+|+.+-+.+.+...+.+..++++.++....+..++++...|..||+..++|.++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~ 307 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE 307 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 36899999999999999999999999999999999999999999999999999779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 011977 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG----QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (474)
.++..+.++.++.++.++.++. ..+++|+...+. .+++....+.+.+....+++++..+..++...+.+.+|+|.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt 387 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence 9999999999999999999986 899999998773 24555677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhH
Q 011977 179 LFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPT 258 (474)
Q Consensus 179 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~ 258 (474)
|+.+.+++.++|+.+++.+.. .+|..|.++++.++..+...+.++..+|+..... .+ .+...+ ..|..+-.
T Consensus 388 P~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~-----~~~~~~-~~k~~l~~ 458 (518)
T COG0728 388 PMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GR-----GWGLFL-ILKLLLAS 458 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc-----hhhHHH-HHHHHHHH
Confidence 999999999999999977764 4888999999999999999988888876554332 11 233344 55555555
Q ss_pred HHHHHHHH
Q 011977 259 VVMFCLEW 266 (474)
Q Consensus 259 ~~~~~~~~ 266 (474)
.+.....+
T Consensus 459 ~i~~~~~~ 466 (518)
T COG0728 459 AIMAAALL 466 (518)
T ss_pred HHHHHHHH
Confidence 44444433
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.69 E-value=1.5e-13 Score=137.77 Aligned_cols=200 Identities=14% Similarity=0.038 Sum_probs=173.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
++..|++++++.|...+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 56789999999999999999999999999999995 9999999999999998763555556778888988886 56778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (474)
+.++.+++........+++..+. ...+++++..+.+++ +..+.+.++++++...+..........+++.||++....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 88999999999999899988876 888999998887654 566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011977 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (474)
Q Consensus 182 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 229 (474)
.+++..+++++..+.+.. .+|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877766664 4799999999999999988888887743
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.67 E-value=2.8e-13 Score=123.26 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=179.0
Q ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 011977 46 LLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISV 124 (474)
Q Consensus 46 ~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (474)
..+++...+++| +|++++|.++....+..+.......|++....+ . .++|+++.++..+.......+.+++...
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 599999999999999998844456777766554 2 2345555566555555444443333332
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 011977 125 LWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR 204 (474)
Q Consensus 125 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 204 (474)
+ ...+..++ .+++. ..++....+..+.........+.+++.+|.+.....+....+....+...+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 12222233 33332 334556677788889999999999999999999999999988885555555442 358
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 011977 205 IVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKL 284 (474)
Q Consensus 205 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (474)
..+..++..++.++..++.....+++.+.+ + +.+..| .++.+.|....+...+.....|.++++.+- |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLRLS-------F-KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCC-------c-hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 888999999998888777766443221111 1 122334 799999999999999999999999999833 399
Q ss_pred HHHHHHHHHHHhHHHh-hhHHhHHHHHHHHHHH
Q 011977 285 ETSVLSICLTISSTHY-FIPYGIGAAASTRVSN 316 (474)
Q Consensus 285 ~~~~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~ 316 (474)
++|.|+++.++..... .+..++++...|.++|
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999986
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.67 E-value=2.9e-14 Score=139.67 Aligned_cols=201 Identities=11% Similarity=-0.006 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCC
Q 011977 21 GAFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAG-HLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAK 99 (474)
Q Consensus 21 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 99 (474)
+.+++..|++++.+.|...++....+....|+.+++ ++|++++|.|+.+.++.+.....+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 344678999999999999999999999999999997 579999999999999977432788889999999999995 4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 011977 100 QYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (474)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (474)
|+++.++..+.........+.+..++ .+++++++.++.+++ ++++.+++++++++..+..............++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888877776 789999999998765 344677888888888887777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 011977 179 LFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMR 228 (474)
Q Consensus 179 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 228 (474)
.....+...+++++++++++.. +|..|+++++.+++.+...+..+...
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999998854 99999999999999999988876665
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.61 E-value=3.2e-13 Score=135.01 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCcc
Q 011977 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY 101 (474)
Q Consensus 23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 101 (474)
.++..|++++.+.|...+.+...+.+.+|+.+++++ |++++|.|+.++++.... ..+...++....|..++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 467999999999999999999999999999999994 999999999888998888 889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 011977 102 QQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLF 180 (474)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (474)
++.++..+++.......+++..+. ..++++++..+.+++. ..+...+.+.++..++..+.......+++.||.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998887 8888899988876653 2367888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHH
Q 011977 181 LSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALY 226 (474)
Q Consensus 181 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~ 226 (474)
..+.++.++|++++.+++. .+|..|++.++ .+ .........+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~-~~~~~~~~~~ 406 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS-VIALALLLFY 406 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH-HHHHHHHHHH
Confidence 9999999999999999984 58999999999 55 3333333333
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.33 E-value=2e-10 Score=112.01 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=187.3
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHH-HhhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISST-HYFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 245 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
..+.|++.+++.|..+....+.....++..+.+++| +.++++.++++...+. -+.+..++..+..|..+|++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999998 6699999999888776 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 011977 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (474)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (474)
+......+++........+|.+. ++.+.+++...+.+|+++...+..+.++..+..+...........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999888888888776 55666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 404 YVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 453 (474)
++.... ..+++++++++.+.+++|..|+..+..++++........+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 999998 6999999999999999999999999999999988876655543
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.27 E-value=3.1e-08 Score=98.18 Aligned_cols=421 Identities=11% Similarity=-0.024 Sum_probs=238.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHH-HHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHH
Q 011977 31 SFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTN-VTGIIPLFGFACALETLCGQAYGAKQYQQIGTYT 108 (474)
Q Consensus 31 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~~~~-~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 108 (474)
.+.+.-.++.|++..+.+++-+.++-| ++|+.+|..+.=..+.. -....-=.++-.+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345566778888888888876666666 69998888744333332 2113334466666554322221111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHH----HHHHHcCCC-HH---HHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHhcC
Q 011977 109 YSAMFFCIAICFPISVLWI--FMD----KVLILLGQD-PE---IATEACNFSISLIPALLAFAV----LRPLIHNLQSQS 174 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~--~~~----~i~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~~ 174 (474)
+....+..+.+.+.+.+.+ ... ....+...+ ++ ..+.....+.+...+.....+ ..+.+..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222333333332222211 010 011111111 11 112222223333333333333 333344444455
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhc-cCCcc-----c-hhHHHHHHHHHHHHHHHHHHHHh--ccc---ccccccCCCh
Q 011977 175 LILPLFLSACATLCFHILLCWYLVFK-ANFRI-----V-GAALAIGLSYCLNAVILALYMRY--SSS---CEKTRVFIFS 242 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~-----~-g~~~a~~i~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~ 242 (474)
|.+..........+++..+....... .+++. . -+.++...+++............ ... .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554444433221 01111 1 12344455555554433322211 111 1111111111
Q ss_pred ---hhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHhHHH-hhhHHhHHHHHHHHHHH
Q 011977 243 ---DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL--LPNSKLETSVLSICLTISSTH-YFIPYGIGAAASTRVSN 316 (474)
Q Consensus 243 ---~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~ 316 (474)
.....-+++++........+....+-..-|.+++.. +. +.++-|.|+++++..++. ..+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111134789999999999999999999999999988 65 488999999999987774 34445565666666666
Q ss_pred hhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011977 317 ELGAGNP---------QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQS 387 (474)
Q Consensus 317 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 387 (474)
...+++. ++..+.....++....+++.+..+-...++.+.+++.++.-.-..+...++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 6544322 4455666666676666666666666666666777766543333446889999999999999999
Q ss_pred HHHHHHhccCCchhhHHHH---HHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 388 VLSGVARGTGWQHIGAYVN---LGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 388 ~~~~~l~~~g~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
+...+.++..+.+-....+ ... .++.+..++.+... ++|..|..+|..+.+..+.+.+..+.++.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~-S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVF-SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988776544432 222 35666778888665 68999999999999999999888777553
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.11 E-value=7.7e-07 Score=79.18 Aligned_cols=313 Identities=12% Similarity=0.021 Sum_probs=188.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-L-GE-LTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 26 ~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
.+.++.++-+|..++.+...+...+-+.-++| - .+ +.+++|+++.++.-++ ..+...+-..... +++++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchhh
Confidence 56779999999999999999888888888887 3 33 5699999999999887 6666555555333 3333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVL--WIFMDKVL-ILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL 179 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (474)
+.+..... .....+..+...++ ......++ ..++.++++.+.++..+.++...-++.++....++++.-.+++...
T Consensus 83 rr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22222222 12222221221222 22333333 5568899999999999999999888999999999988877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---cCCccchhHHHHHHHHHHHHH-HHHHHHHhcccccccccCCChhhHHhHHHHHHHH
Q 011977 180 FLSACATLCFHILLCWYLVFK---ANFRIVGAALAIGLSYCLNAV-ILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFA 255 (474)
Q Consensus 180 ~~~~~~~~~~~i~l~~~li~~---~~~g~~g~~~a~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 255 (474)
...++...+..+++...++.. +.-+..--..+...+..+-+- +.+.++..-.+..+...+..+.+...+++++++.
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 776666666666655555532 111211112222222222222 2222222222222222233333456789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-CCCh---hhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHH-----
Q 011977 256 LPTVVMFCLEWWSFEILILLSGL-LPNS---KLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAA----- 326 (474)
Q Consensus 256 ~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~----- 326 (474)
+|.+........+-.+.+.++++ ++++ ++++++..+.+...-+.+.-.+-+ .+..|..-+ +++.++.
T Consensus 242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~---~~~~~~~~~~~~ 317 (345)
T PF07260_consen 242 WPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDK---NNPQNKLRNCGN 317 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhc---cCcccccccccC
Confidence 99999999999999999999988 5533 467777666666554433222221 222333322 1222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Q 011977 327 ---QLAACVVMVLAVTEAVIVGTILF 349 (474)
Q Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~ 349 (474)
+...+|....++.+++.++..++
T Consensus 318 ~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 318 PVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23566666677777666666554
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=1.4e-05 Score=74.61 Aligned_cols=416 Identities=12% Similarity=0.003 Sum_probs=228.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc--
Q 011977 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLM-MAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ-- 102 (474)
Q Consensus 26 ~~k~~~~~~~p~~~~~~~~~~~~~i~~~-~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~-- 102 (474)
......+.+.-.+..++...+.++..+. .+.+++++.+|..+.-..+.+-. .+. ++--..+......|.++.+
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT--iLF--lsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST--ILF--LSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH--HHH--hhHHHHHHHhccCCCCCCccH
Confidence 3445556666777777777777765554 44557999999887766554432 111 1222223333333443323
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH
Q 011977 103 -QIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQ-DPE-IATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL 179 (474)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (474)
|..+..+.+.-++.+..++..-++ +.+... |+. ..+.-...+.+...+...-.+...+.-..|...+.+.-
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFW------LGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHH------HHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333444433334333333322221 111111 111 11111222233333333333444444444555556666
Q ss_pred HHHHHHHHHHH-HHHHHHHHhcc-CCccchhHHHHHHHHHHHHHHHHHHHHhccc-cc---------ccccCC-Ch-hhH
Q 011977 180 FLSACATLCFH-ILLCWYLVFKA-NFRIVGAALAIGLSYCLNAVILALYMRYSSS-CE---------KTRVFI-FS-DIF 245 (474)
Q Consensus 180 ~~~~~~~~~~~-i~l~~~li~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~---------~~~~~~-~~-~~~ 245 (474)
........+++ ++.-.+++.++ .+++..-++|.....+...+...+++.++++ .. .-.++. .. ...
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 66666666665 33333333332 3455566666666555555533333332222 00 000000 00 001
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHhHHH-hhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 246 SCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN-SKLETSVLSICLTISSTH-YFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 246 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
..-++..+.-....-+.....+...-+.++++.... +-.+-|.|.++++..++. .++...+-...-...++...+++.
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~q 315 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQ 315 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccch
Confidence 122455666666666667776666666666653210 134678899998877664 445556666666666776666666
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 011977 324 QAAQLAAC---VVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQH 400 (474)
Q Consensus 324 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 400 (474)
|+.++... ..++....+++.....-...++....++++..-.-..+...++++++..++.+++.+...+.++.++.+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 66665544 444444444444444444445566666665432233456899999999999999999999999988776
Q ss_pred hhHH---HHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 401 IGAY---VNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 401 ~~~~---~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
-... ..+.. .++.+..++++... +|..|...|..+.+.++.+....+.++.
T Consensus 396 qi~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 396 QIDKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 23333 46678889999665 6889999999999988888765555443
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.51 E-value=2.6e-05 Score=77.71 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=163.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCcc--
Q 011977 27 LKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH--L-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY-- 101 (474)
Q Consensus 27 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 101 (474)
-+++++.+.....+.+.-.+.+--|..++.. + ..++-|.|++++.+-+++.-.+...+.-+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678899999999999999999999999999 6 7899999999999999887888889999998999988765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 011977 102 -------QQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQ 173 (474)
Q Consensus 102 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 173 (474)
++..+.+...+.+...+++++... ...++.++.++.++.=..+.+...++..+..+|+.+++.+...+.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 335666777777888888777766 667777777775543333445677889999999999999999999998
Q ss_pred CChhHHHH---HHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011977 174 SLILPLFL---SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (474)
Q Consensus 174 ~~~~~~~~---~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 230 (474)
...+.... ...+..++-+..++++... ++|..|..+|..+...+...+...++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544433 3444555667777888875 79999999999999999999999988753
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.46 E-value=2.8e-05 Score=63.96 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=73.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011977 150 SISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (474)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 229 (474)
+++.+++.++..+.....+.+++.||++..+..+.++.++|+++++.++ +++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999997 45999999999999999999999888875
Q ss_pred cc
Q 011977 230 SS 231 (474)
Q Consensus 230 ~~ 231 (474)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 43
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.21 E-value=1e-05 Score=66.62 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011977 373 VPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITV 452 (474)
Q Consensus 373 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 452 (474)
+++++++.++..+....++.+++.||+|..++.+..+ .++++++++.+ .|++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998 69999999999 66789999999999999999998888777
Q ss_pred hc
Q 011977 453 TT 454 (474)
Q Consensus 453 ~~ 454 (474)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 65
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.18 E-value=0.00054 Score=62.76 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHHhHHHhhh-HHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011977 258 TVVMFCLEWWSFEILILLS-GLLPNSKLETSVLSICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLAACVVMV 335 (474)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 335 (474)
....+........+...++ ..++ +++.|.|+....+.++...+ ..|++++..-..++...+ .+..++.......
T Consensus 8 ~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~ 83 (273)
T PF01943_consen 8 LFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLF 83 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHH
Confidence 3344444443333344444 4455 99999999999998887765 677888877777765432 2333333333333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhH
Q 011977 336 LAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGI 415 (474)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l 415 (474)
...... .+.... ..+...+.. ++. + ...........++..........+++.++.+.....+.... +..+
T Consensus 84 ~~~~~~-~i~~~~----~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (273)
T PF01943_consen 84 LLLIFS-LIFLLI----LLIASFFGN-PSL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSL 153 (273)
T ss_pred HHHHHH-HHHHHH----HHHHHHcCC-chH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 222222 222222 222223333 322 1 22222222222577888889999999999999998888874 4555
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011977 416 PLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (474)
Q Consensus 416 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 454 (474)
.....+... ..+..+...+..++..+..++..+..+|.
T Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 154 LLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444333 33588888898898888877777666643
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.92 E-value=0.0036 Score=56.57 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=103.9
Q ss_pred HHHhcCCChhhHHHHHHHHHHHhHHHhhhH-HhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011977 274 LLSGLLPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCR 352 (474)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (474)
.+...++ +++.|.|+....+..+...+. .++.+.. .+. .++|.++.++..+..........+.+.++ .
T Consensus 10 ~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 78 (251)
T PF13440_consen 10 LLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSL----VRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL----A 78 (251)
T ss_pred HHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3444455 999999999999988877653 3343333 222 34566677777666665544444443333 2
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHHcCCchhHH
Q 011977 353 YVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGL 432 (474)
Q Consensus 353 ~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~G~ 432 (474)
..+...+ ++++ ...++.+..+..+...........+++.+|.+.......... +..+.....+... +.+..+.
T Consensus 79 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 151 (251)
T PF13440_consen 79 ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWSI 151 (251)
T ss_pred HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHHH
Confidence 2232333 3332 345666777778888999999999999999999999988874 4443333333222 2378888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011977 433 WIGIMTGSAVQAIVLAIITV 452 (474)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~ 452 (474)
.++..++..+..+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888887776555443
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.0014 Score=61.64 Aligned_cols=203 Identities=10% Similarity=-0.002 Sum_probs=149.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccchH
Q 011977 28 KKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL---GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (474)
Q Consensus 28 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l---g~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 104 (474)
++..+.......+.+.-++.+--|..+++-+ .-++-|.|.+++..-++..-.+...+.-..-.+.+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 3566666677778888888999899988843 5567788888888888776777788888888888887776665544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH-
Q 011977 105 ---GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL- 179 (474)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 179 (474)
..++.+.+.+....|++.... ...++..+.+++++.=....+...+++.+..+|+.+++.+..++..+....+..
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 445555666666666665554 556677777776554333344567899999999999999999999887654332
Q ss_pred --HHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011977 180 --FLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSS 232 (474)
Q Consensus 180 --~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 232 (474)
.....+..+..+++++++.-. +|..|..+|.++...+..+....++++..+
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr 451 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYR 451 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233355556677888888876 777999999999999999888888765433
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.71 E-value=0.035 Score=50.23 Aligned_cols=159 Identities=9% Similarity=-0.005 Sum_probs=108.7
Q ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCCh
Q 011977 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (474)
Q Consensus 245 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 323 (474)
...+.+++++-+|..++.....++-.+.+--+++ ..+..+.+|.|+++..+.-++..+...+-+.....+. ++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 4457899999999999999999988887776665 3322456999999999999888887777665554443 322
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 011977 324 QAAQLAACVVMVLAVTEAVI-VGTILFCCRYV-LAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHI 401 (474)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 401 (474)
++ ++........+...... ..+..--++++ +-+++.-||++.+.+...+.++.+..+++++.....+++.=..++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 22222222222222111 11222223333 55667778999999999999999999999999999988886666666
Q ss_pred hHHHHHHH
Q 011977 402 GAYVNLGA 409 (474)
Q Consensus 402 ~~~~~~~~ 409 (474)
....++..
T Consensus 161 V~~aSI~~ 168 (345)
T PF07260_consen 161 VGSASIAD 168 (345)
T ss_pred eehHHHHH
Confidence 66666664
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.46 E-value=0.092 Score=48.58 Aligned_cols=342 Identities=10% Similarity=0.068 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011977 72 FTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSI 151 (474)
Q Consensus 72 ~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 151 (474)
...++...+..|++...++.+|...=++|.+++.........+....+.+++.. +-...++.... |=.
T Consensus 68 Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~ 135 (467)
T COG4267 68 YCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKI 135 (467)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHH
Confidence 334444667778999999999998877777776555555444444444333321 11112222221 112
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011977 152 SLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSS 231 (474)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 231 (474)
..+..+...+...+...++.+.+|.+.....-.++.++...+..++-. .+..|..++..++..+.......++.|.-
T Consensus 136 l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f 212 (467)
T COG4267 136 LACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYF 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 334455556667777888999999999998888998888888877654 68999999999999988888877776443
Q ss_pred cccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH------HHHHHHHhHHHhhhH--
Q 011977 232 SCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSV------LSICLTISSTHYFIP-- 303 (474)
Q Consensus 232 ~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~-- 303 (474)
+-+.+ ..++- .. ..+--...++......++..+|+.+.-.-+++.+-.+. |.+..-.......|.
T Consensus 213 k~~~~-i~FdF--L~----~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~v 285 (467)
T COG4267 213 KSSRR-IGFDF--LL----YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMV 285 (467)
T ss_pred ccccc-cceeh--hh----hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhh
Confidence 22211 11111 11 11112233445566677777777766554432222222 222222222222222
Q ss_pred ---HhHHHHHHHHHHHhh----cCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHH
Q 011977 304 ---YGIGAAASTRVSNEL----GAGN-------PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYV 369 (474)
Q Consensus 304 ---~~l~~~~~p~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 369 (474)
..+-+...+.--+.+ +.+. .++.....++.+.-.+-+-...++.++.+++.+...+.-++ ..
T Consensus 286 vF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~ 361 (467)
T COG4267 286 VFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YY 361 (467)
T ss_pred eeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HH
Confidence 222333333322111 2222 22233333444444455666778888899999988887654 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHH-cCCchhHHHHHHHHHH
Q 011977 370 SELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFV-LNLRGKGLWIGIMTGS 440 (474)
Q Consensus 370 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~g~~G~~~a~~~~~ 440 (474)
.+.+.+-.++.-.+...+.+-++..-.++-+.....+..- .+.|-.+.++.... |.+--.|...|..++-
T Consensus 362 l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl~v 432 (467)
T COG4267 362 LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFLYV 432 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHHHH
Confidence 5666777777777766666666666677777776666554 45565666555332 3333344444444433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=66.88 E-value=1.2e+02 Score=28.95 Aligned_cols=135 Identities=19% Similarity=0.147 Sum_probs=86.4
Q ss_pred hhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHH
Q 011977 300 YFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFS 379 (474)
Q Consensus 300 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 379 (474)
+.+..++.....-.+++..=+||.+.++..+--...+....+..++...+ +.+|+ +..... ...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk--~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYK--ILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHH--HHHHHH
Confidence 33455566666666777776677777777766666655555555443221 11222 222222 233444
Q ss_pred HHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011977 380 IIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIIT 451 (474)
Q Consensus 380 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~ 451 (474)
.+..+........+.+.+|-+.....-.++ .++...++.++-. .+..|..++..++..+..+......
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~I 208 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYI 208 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555666777888899999999999888888 4667777776644 4899999999999887766644433
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=66.00 E-value=36 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011977 304 YGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVI 343 (474)
Q Consensus 304 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (474)
.-++......+.+.+.+||++++++..+++.+++..-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344455567778888999999999999998887654444
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=59.39 E-value=1.8e+02 Score=28.25 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011977 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYA 358 (474)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 358 (474)
++++.+++.+++...+........++.....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999888888777777663
No 49
>PF14184 YrvL: Regulatory protein YrvL
Probab=45.83 E-value=1.5e+02 Score=23.57 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011977 110 SAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEA-CNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLC 188 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 188 (474)
..........++.+........+.+++|.+-+-...- .-.+.....+.|+..+..++...+.-.+-++... ......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHH
Confidence 3344444444444445666677778887664433322 2233344677888888777766666664444433 245556
Q ss_pred HHHHHHHHHHhccCCccchhHHHHHHHHHHHH
Q 011977 189 FHILLCWYLVFKANFRIVGAALAIGLSYCLNA 220 (474)
Q Consensus 189 ~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~ 220 (474)
+...+++..++.-|.=..++.+.+..--+++.
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~~e~i~al 115 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTLSEIIFAL 115 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcHHHHHHHH
Confidence 77788887777644444455444443333333
No 50
>PRK03612 spermidine synthase; Provisional
Probab=32.93 E-value=5.4e+02 Score=26.16 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 011977 178 PLFLSACATLCFHILL-CWYLVFKANFRIVGAALAIGLSYCLNAVILALYMR 228 (474)
Q Consensus 178 ~~~~~~~~~~~~~i~l-~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 228 (474)
.....+.++.++..++ .++++ +.+|..+..+....-++...+..++..+
T Consensus 149 ~ly~~ntlGa~~G~l~~~~vLl--p~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 149 TVLAADYLGALVGGLAFPFLLL--PRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred hhHhHHhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555443 34444 4578877766665555555544444443
No 51
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=32.51 E-value=4e+02 Score=26.21 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=57.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011977 255 ALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVM 334 (474)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 334 (474)
+.|.+++-+.--++-.....+.+...+++.+++ -+......|+|.++...+++.+|+.+..+-+|..+-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 678888777777776666677766553333333 33345788999999999999999998888888877776
Q ss_pred HHHHHHHHHHHH
Q 011977 335 VLAVTEAVIVGT 346 (474)
Q Consensus 335 ~~~~~~~~~~~~ 346 (474)
.........+.+
T Consensus 450 Afivs~~iv~~l 461 (510)
T KOG2468|consen 450 AFIVSSFIVCLL 461 (510)
T ss_pred HHHHHHHHHHHH
Confidence 554444444333
No 52
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=30.60 E-value=2.4e+02 Score=23.67 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=18.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 011977 204 RIVGAALAIGLSYCLNAVILALYMRY 229 (474)
Q Consensus 204 g~~g~~~a~~i~~~~~~~~~~~~~~~ 229 (474)
++.|...++.+++++..++...+.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 34466677888888888777777653
No 53
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=28.95 E-value=5.4e+02 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HcCCC
Q 011977 100 QYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLI-LLGQD 139 (474)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~ 139 (474)
++++.+++++.+...+.+...+..++ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35678999999999999998887775 666666665 43433
No 54
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.68 E-value=2e+02 Score=26.81 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-------cCCchhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977 404 YVNLGAYYIVGIPLASVLCFV-------LNLRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 456 (474)
..++++ ++.+|..++-+.+ |...-.-.++......++..+..++++||++|
T Consensus 260 ~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 260 ILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344443 4566766665443 11111112333344444555567788888888
No 55
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.39 E-value=1.9e+02 Score=27.13 Aligned_cols=51 Identities=14% Similarity=-0.082 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-------cCCchhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977 404 YVNLGAYYIVGIPLASVLCFV-------LNLRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (474)
Q Consensus 404 ~~~~~~~~~~~l~~~~~l~~~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 456 (474)
..++++ ++.+|..++-+.+ |..+-.-.++......++..+..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344443 4566777765543 11111112333344444555566778888887
No 56
>PTZ00370 STEVOR; Provisional
Probab=25.01 E-value=1.2e+02 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHhhc--cHHHHHhh
Q 011977 430 KGLWIGIMTGSAVQA-IVLAIITVTT--NWRKQVSS 462 (474)
Q Consensus 430 ~G~~~a~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 462 (474)
.|++.-..+-..+.. +++.|+++|| .|++..++
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 343333333333333 4455666555 37666544
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.74 E-value=99 Score=24.20 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 011977 207 GAALAIGLSYCLNAVILALYMRY 229 (474)
Q Consensus 207 g~~~a~~i~~~~~~~~~~~~~~~ 229 (474)
|..++.+++-+...++..|+++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333444443
No 58
>PRK10739 putative antibiotic transporter; Provisional
Probab=21.51 E-value=5.3e+02 Score=22.22 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHH
Q 011977 311 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVP 374 (474)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 374 (474)
.|.+-..-.+.+.++.|+..++....+. .+.+.+.++.+.+.+.|+-+-+..+.+-..+-
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555555556677777777776554444 44556777899999999876555555554443
No 59
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=21.32 E-value=6.2e+02 Score=22.92 Aligned_cols=24 Identities=0% Similarity=-0.279 Sum_probs=13.3
Q ss_pred hhhHHhHHHHHHHHhhHHHHHHHH
Q 011977 242 SDIFSCIKEFFSFALPTVVMFCLE 265 (474)
Q Consensus 242 ~~~~~~~k~~l~~~~p~~~~~~~~ 265 (474)
+..++..+..+..+..........
T Consensus 101 ~~Err~~~~~~~~s~~LF~~G~~f 124 (258)
T PRK10921 101 KHERRLVVPLLVSSSLLFYIGMAF 124 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666665554443
Done!