Query 011977
Match_columns 474
No_of_seqs 240 out of 2104
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.5E-50 5E-55 401.2 37.1 431 23-456 7-448 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.4E-20 8.1E-25 184.2 20.3 207 24-231 234-447 (460)
3 1pw4_A Glycerol-3-phosphate tr 87.6 19 0.00064 33.8 35.9 24 426-449 409-432 (451)
4 3o7q_A L-fucose-proton symport 54.7 1.3E+02 0.0045 27.7 32.0 48 28-75 26-75 (438)
5 4aps_A DI-OR tripeptide H+ sym 52.8 1.5E+02 0.0052 27.8 30.7 49 398-447 420-468 (491)
6 2ks1_B Epidermal growth factor 26.4 1.1E+02 0.0036 18.2 4.3 10 220-229 28-37 (44)
7 2k1k_A Ephrin type-A receptor 24.4 76 0.0026 18.1 2.9 11 207-217 15-25 (38)
8 1pw4_A Glycerol-3-phosphate tr 23.5 4.2E+02 0.014 24.1 14.0 16 304-319 75-90 (451)
9 4ev6_A Magnesium transport pro 23.2 1.1E+02 0.0037 27.6 5.4 49 405-456 282-338 (339)
10 2jwa_A Receptor tyrosine-prote 18.3 1.5E+02 0.005 17.6 3.2 31 205-236 14-44 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.5e-50 Score=401.19 Aligned_cols=431 Identities=23% Similarity=0.329 Sum_probs=399.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccc
Q 011977 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (474)
Q Consensus 23 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 102 (474)
.++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++..+. ..+..|++.+..+.++|+.|++|++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~ 85 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence 457899999999999999999999999999999999999999999999998887 8888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 103 QIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
+.++.+++++.+..+.+++.+++..+.++++.+++.|++..+.+..|+++..++.++........+.+|+.||++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999987777778889988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHhHHHHHHHHh
Q 011977 183 ACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKT--RVFIFSDIFSCIKEFFSFAL 256 (474)
Q Consensus 183 ~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~ 256 (474)
++++.++|+++++++++. |++|+.|+++++.+++.+..++..++++++++.+.. +.++.+.+++..|+++++|+
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 999999999999999975 379999999999999999999988888766543221 12333456788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhHHHhhhHHhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011977 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (474)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (474)
|.++++....+...+++.+++++| ++++|+|++++++.++..++..+++++..|.+++++|++|.|+.++..+++.++
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~ 323 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT 323 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999997 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhHH
Q 011977 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l~ 416 (474)
...+++++++++.++++++..+|++|+|+++.+..++++++++.++++++....+.+++.||++.+++.++.+.+++++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 403 (460)
T 3mkt_A 324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP 403 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999898999999999999999999999999999999999999999999997799999
Q ss_pred HHHHHHHH----cC-CchhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977 417 LASVLCFV----LN-LRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (474)
Q Consensus 417 ~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 456 (474)
+++++... ++ +|..|+|+++.+++.+..++..++++|...
T Consensus 404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 56 899999999999999998887777666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.4e-20 Score=184.21 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=193.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHhCCCccch
Q 011977 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (474)
Q Consensus 24 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 103 (474)
++..|++++.++|.+++++...+...+|+.+++++|++++|+|+.+.++.++. ..+..+++++..|.+++++|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45788999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 011977 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (474)
.++..+.+..+....+++.+++ ..+.+++..++..|++..+.+.+++++.+++.++.+++.+..+.+++.||++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999998886 888999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhc----cC-CccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011977 183 ACATL-CFHILLCWYLVFK----AN-FRIVGAALAIGLSYCLNAVILALYMRYSS 231 (474)
Q Consensus 183 ~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 231 (474)
++++. ++++++++++... ++ +|+.|+++++.+++.+..++..+.++|+.
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999999876 56 99999999999999999888777665443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=87.56 E-value=19 Score=33.83 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 011977 426 NLRGKGLWIGIMTGSAVQAIVLAI 449 (474)
Q Consensus 426 ~~g~~G~~~a~~~~~~~~~~~~~~ 449 (474)
..|....++......++..++...
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 356666666655555555544433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=54.73 E-value=1.3e+02 Score=27.66 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHHHH
Q 011977 28 KKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL--GELTLASVAIATSFTNV 75 (474)
Q Consensus 28 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~~~~~~a~~~~~~ 75 (474)
+.+.....-.+...+...........+..++ ++.+.+.......+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 75 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYF 75 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555444555555 45555555444444333
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=52.80 E-value=1.5e+02 Score=27.83 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=19.9
Q ss_pred CchhhHHHHHHHHHHHhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 011977 398 WQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVL 447 (474)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~ 447 (474)
+.+.....+... .+.......+.....+.+....++.......+..++.
T Consensus 420 ~g~~~g~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 420 NSQMMSMWFLSS-SVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp SSSSTHHHHHHH-HHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 2223333333333334454455544444444444433
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.35 E-value=1.1e+02 Score=18.19 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 011977 220 AVILALYMRY 229 (474)
Q Consensus 220 ~~~~~~~~~~ 229 (474)
.+..++++++
T Consensus 28 ~~~~~~~~RR 37 (44)
T 2ks1_B 28 ALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3333444443
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.39 E-value=76 Score=18.10 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 011977 207 GAALAIGLSYC 217 (474)
Q Consensus 207 g~~~a~~i~~~ 217 (474)
|+.++.+++-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 44444443333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.53 E-value=4.2e+02 Score=24.12 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHhhc
Q 011977 304 YGIGAAASTRVSNELG 319 (474)
Q Consensus 304 ~~l~~~~~p~~~~~~~ 319 (474)
..++......+++.+|
T Consensus 75 ~~~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 75 YGFSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHhHHHHHHhcC
Confidence 3444444445566554
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.18 E-value=1.1e+02 Score=27.65 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHc-CC------c-hhHHHHHHHHHHHHHHHHHHHHHhhccH
Q 011977 405 VNLGAYYIVGIPLASVLCFVL-NL------R-GKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (474)
Q Consensus 405 ~~~~~~~~~~l~~~~~l~~~~-~~------g-~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 456 (474)
.++++ ++.+|..++-+.+. ++ + -.| ++......++..++.+++++|++|
T Consensus 282 LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~g-y~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 282 LTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQG-FWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTH-HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHH--HHHHHHHHHHhhccCcCCCCCCccCchH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44443 45667777765431 11 1 123 333344455566667788888888
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.27 E-value=1.5e+02 Score=17.62 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 011977 205 IVGAALAIGLSYCLNAVILALYMRYSSSCEKT 236 (474)
Q Consensus 205 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 236 (474)
+.+...+ ++--++..+....+++|++..+++
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhhhccC
Done!