Query 011977
Match_columns 474
No_of_seqs 240 out of 2104
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 19:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011977.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011977hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 56.1 58 0.0042 27.8 39.3 27 426-452 406-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 29.4 1.4E+02 0.01 24.3 34.9 49 28-76 7-58 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 15.7 2.9E+02 0.021 22.8 19.2 27 202-228 406-432 (447)
4 d1nkzb_ f.3.1.1 (B:) Light-har 10.0 1.3E+02 0.0098 15.8 4.0 34 322-355 7-40 (41)
5 d1ppjd2 f.23.11.1 (D:196-241) 4.8 3E+02 0.022 15.0 2.8 15 445-459 21-35 (46)
6 d1ijdb_ f.3.1.1 (B:) Light-har 3.6 3.5E+02 0.025 14.0 4.3 32 322-353 8-39 (40)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.2 4.1E+02 0.03 14.1 5.1 33 318-350 4-36 (42)
8 d1qled_ f.23.8.1 (D:) Bacteria 2.9 4.4E+02 0.032 14.0 5.1 33 318-350 5-37 (43)
9 d1lghb_ f.3.1.1 (B:) Light-har 2.8 4.7E+02 0.034 14.0 4.2 33 322-354 10-42 (43)
10 d2yvxa3 f.57.1.1 (A:276-448) M 2.6 9.2E+02 0.067 17.1 6.5 36 90-125 61-98 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=56.14 E-value=58 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011977 426 NLRGKGLWIGIMTGSAVQAIVLAIITV 452 (474)
Q Consensus 426 ~~g~~G~~~a~~~~~~~~~~~~~~~~~ 452 (474)
++|..+..+......++..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467666666666555555555444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=29.42 E-value=1.4e+02 Score=24.35 Aligned_cols=49 Identities=4% Similarity=-0.175 Sum_probs=24.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c--ChHHHHHHHHHHHHHHHH
Q 011977 28 KKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-L--GELTLASVAIATSFTNVT 76 (474)
Q Consensus 28 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~a~~~~~~~ 76 (474)
|+.+.++.-.++..+...........++.+ + ++.+.|....+..+...+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i 58 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLL 58 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443333333433 3 566666655554444443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.71 E-value=2.9e+02 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 011977 202 NFRIVGAALAIGLSYCLNAVILALYMR 228 (474)
Q Consensus 202 ~~g~~g~~~a~~i~~~~~~~~~~~~~~ 228 (474)
..|..+..+......++..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666555555555555555544444
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=10.00 E-value=1.3e+02 Score=15.78 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011977 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVL 355 (474)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 355 (474)
+.|++.+....+.+....+.++.=++.+...||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4677888888888888888777766666666553
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=3e+02 Score=14.99 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=8.8
Q ss_pred HHHHHHHhhccHHHH
Q 011977 445 IVLAIITVTTNWRKQ 459 (474)
Q Consensus 445 ~~~~~~~~~~~~~~~ 459 (474)
....++.+|.+|..-
T Consensus 21 ~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 21 LPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhc
Confidence 334566677777543
No 6
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.64 E-value=3.5e+02 Score=14.04 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011977 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRY 353 (474)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
+.+++.+....+.+....+.++.=++.+...|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45778888888888777777665555544433
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.19 E-value=4.1e+02 Score=14.06 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=18.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011977 318 LGAGNPQAAQLAACVVMVLAVTEAVIVGTILFC 350 (474)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (474)
.|+-|.+.-.|.+.-.+++..-.++.+..++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655554444444433
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.93 E-value=4.4e+02 Score=14.00 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=18.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011977 318 LGAGNPQAAQLAACVVMVLAVTEAVIVGTILFC 350 (474)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (474)
.|+-|.+.-.+.+.-.+++..-.++.+..++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lif 37 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVF 37 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665555444444433
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.81 E-value=4.7e+02 Score=13.96 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011977 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYV 354 (474)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (474)
+-++..+.+..+...-..++++.=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666677777766666666555555544443
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.63 E-value=9.2e+02 Score=17.08 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=22.6
Q ss_pred HHHHHHh--CCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011977 90 TLCGQAY--GAKQYQQIGTYTYSAMFFCIAICFPISVL 125 (474)
Q Consensus 90 ~~~s~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (474)
..+-|.. |+-+.++..+.+.+=+...+..+....++
T Consensus 61 ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 61 TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44456677777777777777777665554
Done!