BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011978
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 24/384 (6%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++ NR A H+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V
Sbjct: 6 VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+A+S DG+ + S S ++ W+ + G+ L+GH + G+++ P +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
SAS D ++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
L++ L GH V +A S + + + + D T K ++ ++ + + ++G A
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ + S SDD T+ LW + Q +TGH VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
N G+ + GH V+ +++S D + + S S D T+K+W+ Q L Q L GH+ V
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSV 347
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
+ V +SPDG+ +AS D+ +KLW
Sbjct: 348 WGVAFSPDGQTIASASDDKTVKLW 371
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 206/375 (54%), Gaps = 20/375 (5%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDG 110
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 111 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 163
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 164 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 221
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 282 DDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQ 338
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
GH V+ +++S D + + S S D T+K+W+ R +L Q L GH+ V V +SPDG
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 457 EKVASGGKDRVLKLW 471
+ +AS D+ +KLW
Sbjct: 398 QTIASASDDKTVKLW 412
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 205/375 (54%), Gaps = 20/375 (5%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 192
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 193 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTIASASDDKTV 245
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 246 KLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 303
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ + + + + G A + + S S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 364 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 420
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
GH V+ +++S D + + S S D T+K+W+ R +L Q L GH+ V V +SPDG
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 479
Query: 457 EKVASGGKDRVLKLW 471
+ +AS D+ +KLW
Sbjct: 480 QTIASASDDKTVKLW 494
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 205/375 (54%), Gaps = 20/375 (5%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+ DG
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDG 274
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 327
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 328 KLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 385
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 446 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 502
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
GH V +++S D + + S S D T+K+W+ R +L Q L GH+ V+ V +SPDG
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 561
Query: 457 EKVASGGKDRVLKLW 471
+ +AS D+ +KLW
Sbjct: 562 QTIASASSDKTVKLW 576
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 181/334 (54%), Gaps = 19/334 (5%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAF PDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 315
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 316 QTIASASDDKTVKLWN-RNGQHL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 368
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 426
Query: 282 HWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + ++G A + + S S
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 487 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 543
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
GH V+ +++S D + + S S D T+K+W+
Sbjct: 544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 144
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 265 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 321 LENDKTIKLW 330
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 98 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 146
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 267 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 323 LENDKTIKLW 332
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 79 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 248 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 304 LENDKTIKLW 313
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 91 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 260 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 316 LENDKTIKLW 325
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 70 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 239 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 295 LENDKTIKLW 304
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 75 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 244 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 300 LENDKTIKLW 309
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 73 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 26/316 (8%)
Query: 88 PQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147
P ++P T+AGHT+AV SV FSP+G LAS S D +++W +
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GHK + +AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP---- 116
Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W
Sbjct: 117 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 267 ETTQGKLIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
+T G+ ++ L +G ++ + L L + K Y+ +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373
K ++ G + +VSGS+D +++W +K+ ++ GH +V P
Sbjct: 236 KYCIFANFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTEN 291
Query: 374 WVASASF--DKSIKLW 387
+ASA+ DK+IKLW
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L + S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LA+ S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+A++S DK IK+W GKF GH + ++WS+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L + S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ +++ S L++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
SGS D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLY 311
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L S S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ +++ S L++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
SGS D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C T+ GH+ V F+P + SGS D +VR+WD+ T + H + V + +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
+ DG +VS S G + WD +G+ + ++ + + P + ++A+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-----NGKYILAATL 215
Query: 219 DGDARIWDVSLRKCVICLSGH---------TLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269
D ++WD S KC+ +GH +VT KW I +GS+D + +W
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW-----IVSGSEDNLVYIWNLQ 270
Query: 270 QGKLIRELKGHGHWVNSLALS-TEYALRTGAF--DHTGKQYSS 309
+++++L+GH V S A TE + + A D T K Y S
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 48/334 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLLSGSKDSTLKVWDIRTQKLKQD 439
++KLW+ + GK + + GH Y I + + ++SGS+D+ + +W+++T+++ Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 440 LPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
L GH D V + P +AS D+ +KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLF 311
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 74/119 (62%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + ++WS+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
DS LL+S S D TLK+WD+ + K + L GH++ VF +++P + SG D +++W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 304 GKQYSSPEEMKKAALERYNKIKGNAP-----ERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
G ++ P K L + K + E L S S D + +W K KT ++G
Sbjct: 8 GSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISG 66
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
H+ ++ V +S D + SAS DK++K+W+ ++GK + +GH V+ +++ S L++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
SGS D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 17/295 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLL 418
V+ V FSP+G+++ +A+ D ++KLW+ + GK + + GH Y I + + ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L + L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 147/295 (49%), Gaps = 17/295 (5%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS---ADSRLLL 418
V+ V FSP+G+++ +A+ D +KLW+ + GK + + GH Y I + + ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 471
SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 60/406 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 859 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 913 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 968 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425
+ F+ DG+ + S+S D I++WN TG +V + H V DSR LLS S D T
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGT 1073
Query: 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+KVW++ T ++++D H V + S D K +S D+ K+W
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 150/338 (44%), Gaps = 33/338 (9%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVS 215
+S+D ++ + S +++ WD TGK + H + + + + HL +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHL-----LLAT 725
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
S D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 786 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 823
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 824 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 881
Query: 395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
VA RGH+ V+ + +S D L+ S D T++VW+ +
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+R+ S D T+ +++ A + + + H+ V FS D ++A+ S DK +K+W+
Sbjct: 635 QRIASCGADKTLQVFK-AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
TGK V + H V ++ S LL +GS D LK+WD+ ++ + + GH + V
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 753
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
+SPD E +AS D L+LW
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLW 777
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1056
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1057 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1109
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1110 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1170 HSCAPISVEEGTATHGGWVTDVCFS 1194
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 114/317 (35%), Gaps = 91/317 (28%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 695 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 721
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 722 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 390 TTG---KFVAVFRGHVGP----------VYQISWSADSRLLLSGSKDSTL---------- 426
+ K + V R + V SWSAD ++ +K+ L
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Query: 427 --------------------------------KVWDIRTQKLKQDLPGHADEVFAVDWSP 454
++W+I ++ D GH V V +SP
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 899
Query: 455 DGEKVASGGKDRVLKLW 471
DG + D+ +++W
Sbjct: 900 DGSSFLTASDDQTIRVW 916
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 165/429 (38%), Gaps = 62/429 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 818 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 877
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-- 196
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 935
Query: 197 ------------------------TG-ISWEPVHLNAPC-----RRFVS-ASKDGDARIW 225
TG I + P + C +V+ +DG +I
Sbjct: 936 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 995
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 996 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1054
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF- 394
S D T +W + P + GH V FS DG +A+ + I++WN + G+
Sbjct: 1111 SADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Query: 395 -----VAVFRG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446
++V G H G V + +S DS+ L+S LK W++ T Q +
Sbjct: 1170 HSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTN 1227
Query: 447 VFAVDWSPD 455
+ + SPD
Sbjct: 1228 LKKIHVSPD 1236
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
H V H FS DGQ +AS DK+++++ TG+ + + H V ++S+D +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
+ S D +K+WD T KL H+++V ++ +A+G D LKLW
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1189
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1190 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1241
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1242 TVDNLGILYILQV 1254
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
V R H VY +S D + + S D TL+V+ T + D+ H DEV +S D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 457 EKVASGGKDRVLKLW 471
+A+ D+ +K+W
Sbjct: 677 SYIATCSADKKVKIW 691
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 60/406 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 852 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 961 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425
+ F+ DG+ + S+S D I++WN TG +V + H V DSR LLS S D T
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSR-LLSWSFDGT 1066
Query: 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+KVW++ T ++++D H V + S D K +S D+ K+W
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 150/338 (44%), Gaps = 33/338 (9%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVS 215
+S+D ++ + S +++ WD TGK + H + + + + HL +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHL-----LLAT 718
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
S D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 779 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 816
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 817 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874
Query: 395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
VA RGH+ V+ + +S D L+ S D T++VW+ +
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+R+ S D T+ +++ A + + + H+ V FS D ++A+ S DK +K+W+
Sbjct: 628 QRIASCGADKTLQVFK-AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
TGK V + H V ++ S LL +GS D LK+WD+ ++ + + GH + V
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
+SPD E +AS D L+LW
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLW 770
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1049
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1102
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1103 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1163 HSCAPISVEEGTATHGGWVTDVCFS 1187
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 114/317 (35%), Gaps = 91/317 (28%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 688 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 714
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 715 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 390 TTG---KFVAVFRGHVGP----------VYQISWSADSRLLLSGSKDSTL---------- 426
+ K + V R + V SWSAD ++ +K+ L
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Query: 427 --------------------------------KVWDIRTQKLKQDLPGHADEVFAVDWSP 454
++W+I ++ D GH V V +SP
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892
Query: 455 DGEKVASGGKDRVLKLW 471
DG + D+ +++W
Sbjct: 893 DGSSFLTASDDQTIRVW 909
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/429 (22%), Positives = 165/429 (38%), Gaps = 62/429 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-- 196
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 928
Query: 197 ------------------------TG-ISWEPVHLNAPC-----RRFVS-ASKDGDARIW 225
TG I + P + C +V+ +DG +I
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1047
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF- 394
S D T +W + P + GH V FS DG +A+ + I++WN + G+
Sbjct: 1104 SADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Query: 395 -----VAVFRG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446
++V G H G V + +S DS+ L+S LK W++ T Q +
Sbjct: 1163 HSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTN 1220
Query: 447 VFAVDWSPD 455
+ + SPD
Sbjct: 1221 LKKIHVSPD 1229
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418
H V H FS DGQ +AS DK+++++ TG+ + + H V ++S+D +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
+ S D +K+WD T KL H+++V ++ +A+G D LKLW
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1183 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1234
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1235 TVDNLGILYILQV 1247
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
V R H VY +S D + + S D TL+V+ T + D+ H DEV +S D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 457 EKVASGGKDRVLKLW 471
+A+ D+ +K+W
Sbjct: 670 SYIATCSADKKVKIW 684
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 24/330 (7%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
++GH V V F P + S S D T+++WD T GH + V I++ GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
L S S ++ WD Q G + GH ++ +S P N VSAS+D +
Sbjct: 164 LLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP---NGD--HIVSASRDKTIK 217
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+W+V CV +GH V V+ DG +I + S D T++VW + EL+ H H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
V ++ + E + YSS E A K G L+SGS D T+
Sbjct: 278 VVECISWAPESS------------YSSISE----ATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
+W+ + T + GH V V F G+++ S + DK++++W+ + + H
Sbjct: 322 MWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
V + + + +++GS D T+KVW+ R
Sbjct: 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 64/307 (20%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GHT++V ++F G+ LAS S D T++LWD + GH + V ++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
H+VS S+ ++ W+ QTG +GH++W+ V N S S D
Sbjct: 205 DHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDC 261
R+W V+ ++C L H V C+ W + + +GS+D
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
TIK+W+ + G + L GH +WV G H+G ++
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVR------------GVLFHSGGKF-------------- 352
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
++S +DD T+ +W+ + KT + H+ V + F +V + S D
Sbjct: 353 ----------ILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 382 KSIKLWN 388
+++K+W
Sbjct: 402 QTVKVWE 408
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 145/331 (43%), Gaps = 28/331 (8%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
+ +GH++ V + + +VS S+ ++ WD +TG L GH + IS
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDIS--- 157
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDC 261
+ + S S D ++WD +C+ + GH V+ V GD ++ + S+D
Sbjct: 158 --FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDK 214
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALER 320
TIK+WE G ++ GH WV + + + L + + D T + + + KA L
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
+ + W P S + TG + + G ++ S S
Sbjct: 275 HRHV--------------VECISWAPESSYSSISEATGSETKKS----GKPGPFLLSGSR 316
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
DK+IK+W+ +TG + GH V + + + + +LS + D TL+VWD + ++ + L
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Query: 441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
H V ++D+ V +G D+ +K+W
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 18/223 (8%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH V SV+ P+G + S S D T+++W++ T + TGH+ WV + +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA----------- 208
DG + S S ++ W T K L H+ + ISW P +
Sbjct: 244 QDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 209 ----PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-GGDGVIYTGSQDCTI 263
P +S S+D ++WDVS C++ L GH V V + G I + + D T+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 264 KVWETTQGKLIRELKGHGHWVNSLAL-STEYALRTGAFDHTGK 305
+VW+ + ++ L H H+V SL T + TG+ D T K
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
K+++S ++K +E +K+ A E SG + + + P K ++GH+ V
Sbjct: 53 KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
V F P + SAS D +IK+W+ TG F +GH V IS+ +LL S S D
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 171
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
T+K+WD + + + + GH V +V P+G+ + S +D+ +K+W
Sbjct: 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
+VS S+D T+ +W+ +T + GH V + F G+ +AS S D +IKLW+
Sbjct: 123 MVSASEDATIKVWDYETGDFERT-LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 451
+ + GH V +S + ++S S+D T+K+W+++T + GH + V V
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 452 WSPDGEKVASGGKDRVLKLWM 472
+ DG +AS D+ +++W+
Sbjct: 242 PNQDGTLIASCSNDQTVRVWV 262
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH V V F G+ + S + D T+R+WD + M H+++V + +
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389
Query: 160 ADGKHLVSGSKAGELQCWD 178
++V+GS ++ W+
Sbjct: 390 KTAPYVVTGSVDQTVKVWE 408
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
RC T+ H V S+ F + +GS D TV++W+
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 47/263 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
++ VS +D +IWD + +C L+GHT +V C+++ + VI TGS D T++VW+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
G+++ L H V L R+N
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+V+ S D ++ +W+ A R + GH+ VN V F D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+T +FV GH + + + RL++SGS D+T+++WDI + L GH + V
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 449 AVDWSPDGEKVASGGKDRVLKLW 471
+ + D +++ SG D +K+W
Sbjct: 341 CIRF--DNKRIVSGAYDGKIKVW 361
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 72/338 (21%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
D +++ SG D T+++WD NT TGH VLC+ + D + +++GS ++ WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW------DVSLRKC 232
TG+ N L H + + +HL V+ SKD +W D++LR+
Sbjct: 200 VNTGEML-NTLIHHCEAV-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ GH AV V + D I + S D TIKVW T+ + +R L GH +
Sbjct: 252 LV---GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-------- 299
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352
A L+ +++ +VSGS D T+ LW+
Sbjct: 300 -----------------------ACLQYRDRL-------VVSGSSDNTIRLWDIECGACL 329
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---------KFVAVFRGHVG 403
+ + GH++LV + F D + + S ++D IK+W+ + H G
Sbjct: 330 RV-LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 441
V+++ + D ++S S D T+ +WD Q P
Sbjct: 387 RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430
D Q + S D +IK+W+ T + + GH G V + + D R++++GS DST++VWD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ T ++ L H + V + + + + + KDR + +W
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVW 238
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 62/342 (18%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V++ G ++ SGS D T+++W T + GH V WS+ +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
++SGS L+ W+ +TG+ + L GH + +HL+ +R VS S+D
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
R+WD+ +C+ L GH AV CV++ G V+ +G+ D +KVW+ + L+GH
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
+ V SL FD +VSGS D ++
Sbjct: 280 NRVYSL-----------QFDGI---------------------------HVVSGSLDTSI 301
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG- 400
+W+ T +TGHQ L + + + + S + D ++K+W+ TG+ + +G
Sbjct: 302 RVWDVETGNCIHT-LTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 401 --HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
H V + ++ + +++ S D T+K+WD++T + ++L
Sbjct: 359 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 125/272 (45%), Gaps = 27/272 (9%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
R VS S D ++W KC+ L GHT V W D +I +GS D T+KVW
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE------MKKAALERYN 322
G+ I L GH V + L E + +G+ D T + + M A R
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+ G R+VSG+ DF + +W+P T + GH V + F DG V S S D
Sbjct: 246 QYDG---RRVVSGAYDFMVKVWDPETETCLHT-LQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442
SI++W+ TG + GH + + +L+SG+ DST+K+WDI+T + Q L G
Sbjct: 300 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 443 ---HADEVFAVDWSPDGEKVASGGKDRVLKLW 471
H V + ++ + V + D +KLW
Sbjct: 358 PNKHQSAVTCLQFNKNF--VITSSDDGTVKLW 387
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 145/338 (42%), Gaps = 33/338 (9%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + + H++ VLC A
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S D + + + S +++ W+ TG+ + H + + H + A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELV-HTYDEHSEQVNC-----CHFTNSSHHLLLAT 724
Query: 218 KDGDA--RIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+K+W+ T
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + ++N P+E + + + +V+
Sbjct: 785 KSINVKQFFLN---------------------LEDPQE-DMEVIVKCCSWSADGARIMVA 822
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ +FL++ S TGH + + FSP A ++LWN +
Sbjct: 823 AKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
VA RGH+ V+ + +S D L+ S D T+++W+ +
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 172/433 (39%), Gaps = 72/433 (16%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD----------------LNTQTP 142
C T+ GHT +V FSPD + LAS S D T++LWD LN + P
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 799
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
+ V C +WSADG ++ +K ++ +D T G +GH I +
Sbjct: 800 Q---EDMEVIVKCCSWSADGARIMVAAK-NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDC 261
P + A V A +W+ R V GH V V + DG + T S D
Sbjct: 856 PQNHLA-----VVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 262 TIKVWETTQG------KLIRELKGHGHWVNSLALSTEYALR-------TGAFDH-TGKQY 307
TI++WET + L +E+ + L+ ++ R TG D+ T Q
Sbjct: 911 TIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQV 970
Query: 308 S----SP---------EEMKKAALERYNK---------------IKGNAPER-LVSGSDD 338
S SP E LE N I+ A E+ L+S SDD
Sbjct: 971 SCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDD 1030
Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
+ +W + K R GHQ+ V + + + S SFD ++K+WN TG F
Sbjct: 1031 AEIQVWNWQLDKCIFLR--GHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 399 RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 458
H G V S D+ S S D T K+W +L GH V +S D
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTL 1147
Query: 459 VASGGKDRVLKLW 471
+A+G + +++W
Sbjct: 1148 LATGDDNGEIRIW 1160
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+R+ S D T+ +++ A + + + H+ V FS D +++A+ S DK +K+WN
Sbjct: 634 QRIASCGADKTLQVFK-AETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
TG+ V + H V ++ S LL +GS D LK+WD+ ++ + + GH + V
Sbjct: 693 MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV 752
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
+SPD + +AS D LKLW
Sbjct: 753 NHCRFSPDDKLLASCSADGTLKLW 776
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 25/256 (9%)
Query: 239 HTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALR 296
HT AV + DG I + D T++V++ G+ + E+K H V A ST+ +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 297 TGAFDHTGKQYSSPE-EMKKAALERYNKIK----GNAPERLV--SGSDDFTMFLWEPAVS 349
T + D K ++S E+ E ++ N+ L+ +GS D + LW+
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-Q 738
Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAV---FRGHVG 403
K+ + M GH VNH FSPD + +AS S D ++KLW+ T+ K + V F
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLED 798
Query: 404 P-------VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPD 455
P V SWSAD ++ +K+ ++DI T L ++ GH + D+SP
Sbjct: 799 PQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQ 857
Query: 456 GEKVASGGKDRVLKLW 471
++LW
Sbjct: 858 NHLAVVALSQYCVELW 873
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 144/374 (38%), Gaps = 31/374 (8%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
GH + FSP V LW+ ++++ + C GH +WV + +S DG
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP----VHLNAPCRRFVSASKDGD 221
++ S ++ W +T K N K+ + + E + ++ R + + G
Sbjct: 904 LTSSDDQTIRLW--ETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQ 961
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
+ C CLS H I G ++ I++ E ++ + H
Sbjct: 962 IDYLTEAQVSCC-CLSPHL-----------QYIAFGDENGAIEILELVNNRIFQSRFQHK 1009
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL----ERYNKIKGNAPERLVSGSD 337
V + + + + D Q + + K L E + RL+S S
Sbjct: 1010 KTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397
D T+ +W + K HQ V S D +S S DK+ K+W+ +
Sbjct: 1070 DGTVKVWNIITGNKEKD-FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE 1128
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--------KQDLPGHADEVFA 449
RGH G V ++S DS LL +G + +++W++ +L ++ H V
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 450 VDWSPDGEKVASGG 463
+ +SPDG+ + S G
Sbjct: 1189 LCFSPDGKMLISAG 1202
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 138/360 (38%), Gaps = 63/360 (17%)
Query: 76 VSVEKVLSIVYQPQAVF--------RIRPVNRCSATIAGHTEAVLSVA-FSPDGRQLASG 126
V +++ + +V+Q V R++ +N + I TEA +S SP + +A G
Sbjct: 926 VMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
+ + + +L HK V I ++AD K L+S S E+Q W+ Q K
Sbjct: 986 DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAV 243
L GH++ + R +S S DG ++W++ + K +C G L+
Sbjct: 1046 --LRGHQETVKDFRL------LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC 1097
Query: 244 TCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
D ++ S D T K+W + EL+GH V A S + L D
Sbjct: 1098 DI---SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD- 1153
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
N R+ + S+ + L P + T H
Sbjct: 1154 ------------------------NGEIRIWNVSNGELLHLCAPLSEEGAAT----HGGW 1185
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--------RGHVGPVYQISWSADS 414
V + FSPDG+ + SA IK WN TG+ F + HV P ++ + D+
Sbjct: 1186 VTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDN 1243
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLC 155
+ GH V AFS D LA+G + +R+W+++ + C H WV
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ +S DGK L+S G ++ W+ TG+ S + G + + +H++ + +V+
Sbjct: 1189 LCFSPDGKMLISA--GGYIKWWNVVTGE------SSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 216 ASKDG 220
G
Sbjct: 1241 VDNLG 1245
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
V R H VY +S D + + S D TL+V+ T + ++ H DEV +S D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 457 EKVASGGKDRVLKLW 471
+A+ D+ +K+W
Sbjct: 676 RFIATCSVDKKVKIW 690
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 78/361 (21%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
T+ HT+ V ++A D + S S D ++ LW L + + TGH ++V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
S+DG+ +SGS GEL+ WD G S GH K + ++ + R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
S+D ++W+ +L +C +S GH V+CV++ + + I + S D T+KVW +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
KL L GH +V+++A+S + +L
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
SG D + LW+ A K K +++ + FSP+ W+ +A+ + IK+W+
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGP-------VY--QISWSADSRLLLSGSKDSTLKVWD 430
+ V + + GP +Y ++WSAD L SG D ++VW
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
Query: 431 I 431
I
Sbjct: 691 I 691
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 113/249 (45%), Gaps = 51/249 (20%)
Query: 236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSLA 288
+ HT VT + D +I + S+D +I +W+ T+ G R L GH H+V +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
LS++ G F +SGS D + LW+ A
Sbjct: 438 LSSD-----GQF-------------------------------ALSGSWDGELRLWDLAA 461
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF----RGHVGP 404
+ R GH + V V FS D + + SAS D++IKLWN T G+ GH
Sbjct: 462 GVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDW 519
Query: 405 VYQISWSADSR--LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462
V + +S ++ ++S S D T+KVW++ KL+ L GH V V SPDG ASG
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 463 GKDRVLKLW 471
GKD V+ LW
Sbjct: 580 GKDGVVLLW 588
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 70/352 (19%)
Query: 148 GHKNWVLCIAWSADGKHL-VSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGISWE 202
H + V IA D + VS S+ + W D + + L+GH ++ E
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV-----E 434
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261
V L++ + +S S DG+ R+WD++ GHT V V + D I + S+D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 262 TIKVWETT-QGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318
TIK+W T + K G GH WV+ + S P ++
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFS-------------------PNTLQPT-- 533
Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
+VS S D T+ +W + K ++ + GH V+ V SPDG AS
Sbjct: 534 -------------IVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT----Q 434
D + LW+ GK + + ++ + +S + R L + + +K+WD+ + +
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVE 637
Query: 435 KLKQDLPGHADEV---------------FAVDWSPDGEKVASGGKDRVLKLW 471
LK DL A++ +++WS DG + SG D V+++W
Sbjct: 638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+ +T+AGHT V +VA SPDG ASG D V LWDL ++ + + + + +
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
S + L + ++ G ++ WD ++ K + + V L A + A
Sbjct: 611 SPNRYWLCAATEHG-IKIWDLES-----------KSIVEDLK---VDLKAEAEK---ADN 652
Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
G A + RK + C T + W DG +++G D I+VW
Sbjct: 653 SGPA----ATKRKVIYC--------TSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 133/334 (39%), Gaps = 52/334 (15%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GH N VLC+ W D + +VS S+ G++ WD T + ++ W+ ++ P
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
C D ++ +++ +K + + + L+ C D I T S
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+L++ GHG V L L+ P E
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLA-------------------PSET------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
GN VSG D +W+ S Q H+ VN V + P G AS S
Sbjct: 210 ------GNT---FVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + VA++ + + +S RLL +G D T+ VWD+
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + SPDG SG D L++W
Sbjct: 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 31/354 (8%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKV---LSIVYQPQAVFRIRP----VNRCSATIAGHTEA 110
+ ++E L L S E K +E+ L V Q R+ V + T+ GH
Sbjct: 7 LHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
VL + + D R++ S S D V +WD T T WV+ A++ G + G
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 171 AGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
+ + P T + N ++ H +++ S+ + + ++AS DG +
Sbjct: 127 DNKCSVY-PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-----QILTASGDGTCAL 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
WDV + + GH V C+ +G D VW+ G+ ++ + H
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 282 HWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP-------ERLV 333
VNS+ + A +G+ D T + Y + + A + + I G + L
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+G +D+T+ +W+ + + + GH+ V+ + SPDG S S+D ++++W
Sbjct: 301 AGYNDYTINVWD-VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 24/256 (9%)
Query: 236 LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH V C+ W D I + SQD + VW++ + WV + A + +
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 294 ALRTGAFDHTGKQY----SSPEEM---KKAALERYNKIKG----NAPERLVSGSDDFTMF 342
A+ G D+ Y E M KK+ N + N+ ++++ S D T
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRG 400
LW+ S Q GH V + +P G S DK +W+ +G+ V F
Sbjct: 180 LWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
Query: 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE--VF---AVDWSPD 455
H V + + SGS D+T +++D+R + ++ ++ E +F +VD+S
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLS 295
Query: 456 GEKVASGGKDRVLKLW 471
G + +G D + +W
Sbjct: 296 GRLLFAGYNDYTINVW 311
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 392 GKFVA----VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
G+FV +GH V + W D R ++S S+D + VWD T + + V
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV 109
Query: 448 FAVDWSPDGEKVASGGKDRVLKLW 471
A ++P G +A GG D ++
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVY 133
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 76/367 (20%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKA---------GELQCW---------DPQTGKP 184
+ K H + V C+ +S DG++L +G G L DP+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
S +P S +I + + P + + ++D RIWD+ RK V+ L GH +
Sbjct: 117 SSSPSS--DLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 245 CVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
+ + GD ++ +GS D T+++W+ G+ SL LS E + T A
Sbjct: 170 SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQC------------SLTLSIEDGVTTVAVSP 216
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
+Y I + +R V D T FL E S+ TGH+
Sbjct: 217 GDGKY----------------IAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDS 258
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWN------------GTTGKFVAVFRGHVGPVYQISW 410
V V F+ DGQ V S S D+S+KLWN +G + GH V ++
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV------DWSPDGEKVASGGK 464
+ + +LSGSKD + WD ++ L GH + V +V P+ A+G
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378
Query: 465 DRVLKLW 471
D ++W
Sbjct: 379 DCKARIW 385
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 143/362 (39%), Gaps = 78/362 (21%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTT-----------VRLWD----------LNTQTPMFK 145
HT V V FS DG LA+G TT RL D LNT +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS---- 118
Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
++ + +S DGK L +G++ ++ WD + K L GH++ I + + P
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-- 175
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
+ VS S D RIWD+ +C + LS T GDG I GS D ++
Sbjct: 176 ---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
VW++ G L+ L +E TG D Y+ +
Sbjct: 233 VWDSETGFLVER------------LDSENESGTGHKDSV-----------------YSVV 263
Query: 325 KGNAPERLVSGSDDFTMFLW------EPAVSKQPKT-----RMTGHQQLVNHVYFSPDGQ 373
+ +VSGS D ++ LW + SK P + GH+ V V + + +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL------LLSGSKDSTLK 427
++ S S D+ + W+ +G + + +GH V ++ + S L +GS D +
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 428 VW 429
+W
Sbjct: 384 IW 385
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKS 383
+ P+ L ++D+ + L+ PA+ ++ + H +V V FS DG+++A+ +K+
Sbjct: 29 SVPDALKKQTNDYYI-LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGP------------------VYQISWSADSRLLLSGSKDST 425
+++ + G VA + + +S D + L +G++D
Sbjct: 87 TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146
Query: 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+++WDI +K+ L GH +++++D+ P G+K+ SG DR +++W
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 24/211 (11%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + + S+ + P G +L SGSGD TVR+WDL T + DGK
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 164 HLVSGSKAGELQCWDPQTG------KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
++ +GS ++ WD +TG +GHK + + + + VS S
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-----TRDGQSVVSGS 275
Query: 218 KDGDARIWDVSLRK------------CVICLSGH-TLAVTCVKWGGDGVIYTGSQDCTIK 264
D ++W++ C + GH ++ D I +GS+D +
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYAL 295
W+ G + L+GH + V S+A++ +L
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 85 VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------- 137
V+ + F + ++ + + GH ++V SV F+ DG+ + SGS D +V+LW+L
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 138 -----NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---L 189
N+ T GHK++VL +A + + ++++SGSK + WD K SGNP L
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD----KKSGNPLLML 348
Query: 190 SGHKKWITGIS-WEPVHLNAPCRRFVSASKDGDARIW 225
GH+ + ++ L F + S D ARIW
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 99 RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHK 150
+CS T++ + V +VA SP DG+ +A+GS D VR+WD T + + TGHK
Sbjct: 198 QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK---PSGNPLS--------GHKKWITGI 199
+ V + ++ DG+ +VSGS ++ W+ Q S P S GHK ++ +
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-------G 252
+ +S SKD WD ++ L GH +V V
Sbjct: 317 A-----TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 371
Query: 253 VIYTGSQDCTIKVWE 267
V TGS DC ++W+
Sbjct: 372 VFATGSGDCKARIWK 386
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 121
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+ GH V SL+L+ + L
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
VSG+ D + LW+ +T TGH+ +N + F P+G A+ S
Sbjct: 210 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 256
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + + + + + +S+S RLLL+G D VWD
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + + DG VA+G D LK+W
Sbjct: 317 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 34/336 (10%)
Query: 72 EKHKVSVEKVLS-IVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT 130
+ K + LS I V RI+ R T+ GH + ++ + D R L S S D
Sbjct: 31 DARKACADATLSQITNNIDPVGRIQMRTR--RTLRGHLAKIYAMHWGTDSRLLVSASQDG 88
Query: 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---GN 187
+ +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 89 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 148
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLSGHTL 241
L+GH +++ C RF V++S D +WD+ + +GHT
Sbjct: 149 ELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 242 AVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYALRTGA 299
V + D ++ +G+ D + K+W+ +G + GH +N++ A TG+
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAVSKQP 352
D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADR 315
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
RGH+ +Y + W DSRLL+S S+D L +WD T +P + V ++P G
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 458 KVASGGKDRVLKLW 471
VA GG D + ++
Sbjct: 122 YVACGGLDNICSIY 135
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 345 EPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------- 391
+P Q +TR T GH + +++ D + + SAS D + +W+ T
Sbjct: 49 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 108
Query: 392 -----------GKFVAV------------------------FRGHVGPVYQISWSADSRL 416
G +VA GH G + + D+++
Sbjct: 109 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 168
Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ S S D+T +WDI T + GH +V ++ +PD SG D KLW
Sbjct: 169 VTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+ GH V SL+L+ + L
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
VSG+ D + LW+ +T TGH+ +N + F P+G A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + + + + + +S+S RLLL+G D VWD
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + + DG VA+G D LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
RGH+ +Y + W DSRLL+S S+D L +WD T +P + V ++P G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 458 KVASGGKDRVLKLW 471
VA GG D + ++
Sbjct: 111 YVACGGLDNICSIY 124
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 345 EPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------- 391
+P Q +TR T GH + +++ D + + SAS D + +W+ T
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 392 -----------GKFVAV------------------------FRGHVGPVYQISWSADSRL 416
G +VA GH G + + D+++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ S S D+T +WDI T + GH +V ++ +PD SG D KLW
Sbjct: 158 VTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + LVS S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+ GH V SL+L+ + L
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
VSG+ D + LW+ +T TGH+ +N + F P+G A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + + + + + +S+S RLLL+G D VWD
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + + DG VA+G D LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 34/336 (10%)
Query: 72 EKHKVSVEKVLS-IVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT 130
+ K + LS I V RI+ R T+ GH + ++ + D R L S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRIQMRTR--RTLRGHLAKIYAMHWGTDSRLLVSASQDG 77
Query: 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---GN 187
+ +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLSGHTL 241
L+GH +++ C RF V++S D +WD+ + +GHT
Sbjct: 138 ELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 242 AVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYALRTGA 299
V + D ++ +G+ D + K+W+ +G + GH +N++ A TG+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAVSKQP 352
D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADR 304
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 398 FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457
RGH+ +Y + W DSRLL+S S+D L +WD T +P + V ++P G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 458 KVASGGKDRVLKLW 471
VA GG D + ++
Sbjct: 111 YVACGGLDNICSIY 124
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 345 EPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------- 391
+P Q +TR T GH + +++ D + + SAS D + +W+ T
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 392 -----------GKFVAV------------------------FRGHVGPVYQISWSADSRL 416
G +VA GH G + + D+++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ S S D+T +WDI T + GH +V ++ +PD SG D KLW
Sbjct: 158 VTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + L+S S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+ GH V SL+L+ + L
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
VSG+ D + LW+ +T TGH+ +N + F P+G A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + + + + + +S+S RLLL+G D VWD
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + + DG VA+G D LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
RGH+ +Y + W DSRLLLS S+D L +WD T +P + V ++P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 457 EKVASGGKDRVLKLW 471
VA GG D + ++
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 345 EPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------- 391
+P Q +TR T GH + +++ D + + SAS D + +W+ T
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 392 -----------GKFVAV------------------------FRGHVGPVYQISWSADSRL 416
G +VA GH G + + D+++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ S S D+T +WDI T + GH +V ++ +PD SG D KLW
Sbjct: 158 VTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 57/334 (17%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVH- 205
GH + + W D + L+S S+ G+L WD T K PL W+ ++ P
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGN 110
Query: 206 ------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
L+ C + +++G+ R+ R+ L+GHT ++C ++ D I T S
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRV----SRE----LAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+ GH V SL+L+ + L
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL------------------------ 198
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
VSG+ D + LW+ +T TGH+ +N + F P+G A+ S
Sbjct: 199 ------------FVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNAFATGS 245
Query: 380 FDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437
D + +L++ + + + + + +S+S RLLL+G D VWD
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
L GH + V + + DG VA+G D LK+W
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 34/336 (10%)
Query: 72 EKHKVSVEKVLS-IVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT 130
+ K + LS I V RI+ R T+ GH + ++ + D R L S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRIQMRTR--RTLRGHLAKIYAMHWGTDSRLLLSASQDG 77
Query: 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---GN 187
+ +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLSGHTL 241
L+GH +++ C RF V++S D +WD+ + +GHT
Sbjct: 138 ELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 242 AVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYALRTGA 299
V + D ++ +G+ D + K+W+ +G + GH +N++ A TG+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAVSKQP 352
D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADR 304
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
RGH+ +Y + W DSRLLLS S+D L +WD T +P + V ++P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 457 EKVASGGKDRVLKLW 471
VA GG D + ++
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 345 EPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------- 391
+P Q +TR T GH + +++ D + + SAS D + +W+ T
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 392 -----------GKFVAV------------------------FRGHVGPVYQISWSADSRL 416
G +VA GH G + + D+++
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ S S D+T +WDI T + GH +V ++ +PD SG D KLW
Sbjct: 158 VTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 11/152 (7%)
Query: 331 RLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
++VS S D T+ W P + P R+ GH V+ V S +G + SAS+D
Sbjct: 30 KVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDH 89
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442
S++LWN G+ F GH V +++S D+R ++SG +D+ L+VW+++ + + G
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 443 -HADEVFAVDWSP--DGEKVASGGKDRVLKLW 471
H D V V +SP D + SGG D ++K+W
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 70/352 (19%)
Query: 104 IAGHTEAVLSVAF--SPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKN 151
+ GH V S+A +P+ ++ S S D T+ W N +C+ GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+V +A S +G VS S L+ W+ Q G+ L GH K + +++ P + R
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDN-----R 122
Query: 212 RFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG---GDGVIYTGSQDCTIKVW 266
+ VS +D R+W+V +C+ LS HT V+CV++ VI +G D +KVW
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
+ G+L+ +LKGH ++V S+ +S + +L K ++ KG
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSL-------------CASSDKDGVARLWDLTKG 228
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
A + +G+ +N + FSP+ W+ +A+ +K I++
Sbjct: 229 EALSEMAAGAP-------------------------INQICFSPNRYWMCAAT-EKGIRI 262
Query: 387 WNGTTGKFVAVF-------RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
++ + + V I+WSAD L SG D+ ++VW +
Sbjct: 263 FDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 145/346 (41%), Gaps = 64/346 (18%)
Query: 147 TGHKNWVLCIAWS---ADGKHLVSGSKAGELQCWDPQTGKPS-----GNP---LSGHKKW 195
TGH+ WV +A +VS S+ L W P + S G P L GH +
Sbjct: 10 TGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAF 69
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254
++ ++ L+ VSAS D R+W++ +C GHT V V + D I
Sbjct: 70 VSDVA-----LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 255 YTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
+G +D ++VW +G+ + L H WV+ + S
Sbjct: 125 VSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSL------------------- 164
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
+AP +VSG D + +W+ A + T + GH V V SPDG
Sbjct: 165 --------------DAPV-IVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDG 208
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
AS+ D +LW+ T G+ ++ P+ QI +S + R + + + ++++D+
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAG-APINQICFSPN-RYWMCAATEKGIRIFDLE 266
Query: 433 TQKLKQDL-PGH------ADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ + +L P H E ++ WS DG + SG D V+++W
Sbjct: 267 NKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIA 157
+C GHT+ VLSVAFSPD RQ+ SG D +R+W++ + G H +WV C+
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 158 WSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+S D +VSG ++ WD TG+ + L GH ++T ++ P + C S
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-LKGHTNYVTSVTVSPD--GSLC---AS 213
Query: 216 ASKDGDARIWDVS 228
+ KDG AR+WD++
Sbjct: 214 SDKDGVARLWDLT 226
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 42/222 (18%)
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
G+++ + T Q L LKGH WV +A + ++
Sbjct: 14 GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF----------------------- 50
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDG 372
P+ ++S S D T+ +W+ + P+ + GH V+ V S DG
Sbjct: 51 ------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-I 431
Q+ S S+D +++LW+ TTG F GH V +++S+D+R ++SGS+D T+K+W+ +
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 432 RTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
K H++ V V +SP+ + S G D+++K+W
Sbjct: 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 64/349 (18%)
Query: 102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 145
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 229
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWDLEG 286
Query: 392 GKFVAVFRGHVGPV---------YQISWSADSRLLLSGSKDSTLKVWDI 431
V + V ++WSAD + L +G D+ ++VW +
Sbjct: 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 31/307 (10%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-----CLSGHTLAV 243
L GH W+T I+ P + +SAS+D +W ++ + L GH+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDM----ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFD 301
+ V DG +GS D T+++W+ T G R GH V S+A S++ + +G+ D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 302 HTGK--------QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
T K +Y+ +E + ++ +VS D + +W A K K
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-K 208
Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
T GH +N V SPDG AS D LW+ GK + G G + +
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSP 266
Query: 414 SRLLLSGSKDSTLKVWD----IRTQKLKQDLPGHAD-----EVFAVDWSPDGEKVASGGK 464
+R L + ++K+WD I +LKQ++ + + ++ WS DG+ + +G
Sbjct: 267 NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 326
Query: 465 DRVLKLW 471
D ++++W
Sbjct: 327 DNLVRVW 333
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 49/126 (38%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----------CTGHKNWVLC 155
GHT + +V SPDG ASG D LWDLN ++ C + LC
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 156 ---------------------------------------IAWSADGKHLVSGSKAGELQC 176
+AWSADG+ L +G ++
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Query: 177 WDPQTG 182
W G
Sbjct: 333 WQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 42/211 (19%)
Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
T Q L LKGH WV +A + ++
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQF---------------------------------- 27
Query: 328 APERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
P+ ++S S D T+ +W+ + P+ + GH V+ V S DGQ+ S S+D +
Sbjct: 28 -PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRTQKLKQDLPG 442
++LW+ TTG F GH V +++S+D+R ++SGS+D T+K+W+ + K
Sbjct: 87 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 443 HADEVFAVDWSPDGEK--VASGGKDRVLKLW 471
H++ V V +SP+ + S G D+++K+W
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 64/349 (18%)
Query: 102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 122
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 206
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWDLEG 263
Query: 392 GKFVAVFRGHVGPV---------YQISWSADSRLLLSGSKDSTLKVWDI 431
V + V ++WSAD + L +G D+ ++VW +
Sbjct: 264 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 31/307 (10%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-----CLSGHTLAV 243
L GH W+T I+ P + +SAS+D +W ++ + L GH+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDM----ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFD 301
+ V DG +GS D T+++W+ T G R GH V S+A S++ + +G+ D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 302 HTGK--------QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
T K +Y+ +E + ++ +VS D + +W A K K
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-K 185
Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413
T GH +N V SPDG AS D LW+ GK + G G + +
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSP 243
Query: 414 SRLLLSGSKDSTLKVWD----IRTQKLKQDLPGHAD-----EVFAVDWSPDGEKVASGGK 464
+R L + ++K+WD I +LKQ++ + + ++ WS DG+ + +G
Sbjct: 244 NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT 303
Query: 465 DRVLKLW 471
D ++++W
Sbjct: 304 DNLVRVW 310
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 49/126 (38%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----------CTGHKNWVLC 155
GHT + +V SPDG ASG D LWDLN ++ C + LC
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 156 ---------------------------------------IAWSADGKHLVSGSKAGELQC 176
+AWSADG+ L +G ++
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 177 WDPQTG 182
W G
Sbjct: 310 WQVTIG 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 30/276 (10%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
Y + TG+ D+T + P+E + P+ D+ + P
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKE-------------SSVPDH--GEEHDYPLVFHTPEE 258
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
+ + GH V V S G V S S+D ++ +W+ K + + GH +Y
Sbjct: 259 NPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST 316
Query: 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+ + + +S S D+T+++WD+ +L L GH
Sbjct: 317 IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L L+GH V L LS ++ + A
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASXDTTIRIWDLENGELX-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL + GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 38/296 (12%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
Y + TG+ D+T + P+E + P+ D+ + P
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKE-------------SSVPDH--GEEHDYPLVFHTPEE 258
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
+ + GH V V S G V S S+D ++ +W+ K + + GH +Y
Sbjct: 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST 316
Query: 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV--------FAVDWSPDG 456
+ + + +S S D+T+++WD+ +L L GH V F V + DG
Sbjct: 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADG 372
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L+ L+GH V L LS ++ + A
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASMDTTIRIWDLENGELM-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL M+ GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + +++SGS+D T+KVW I+ Q L L GH
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K + V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 441 P------GHADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
A E AV WS DG+ + +G D V+++W
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF 241
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 242 SLAFSPN 248
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 134/352 (38%), Gaps = 67/352 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW-- 387
+ S D + LW A K T Q V + FSP+ W+A+A+ IK++
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 265
Query: 388 ------NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433
+ +F + ++WSAD + L +G D+ ++VW + T
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + +++SGS+D T+KVW I+ Q L L GH
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K + V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 441 P------GHADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
A E AV WS DG+ + +G D V+++W
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF 241
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 242 SLAFSPN 248
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 134/352 (38%), Gaps = 67/352 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW-- 387
+ S D + LW A K T Q V + FSP+ W+A+A+ IK++
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 265
Query: 388 ------NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433
+ +F + ++WSAD + L +G D+ ++VW + T
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + +++SGS+D T+KVW I+ Q L L GH
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 140/339 (41%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K + V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 441 ----PGH--ADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
G+ A E AV WS DG+ + +G D V+++W
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF 241
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 242 SLAFSPN 248
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 135/352 (38%), Gaps = 67/352 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A+ IK+++
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 265
Query: 390 TTGKFVAVFR----GHVGP----VYQISWSADSRLLLSGSKDSTLKVWDIRT 433
V R G+ ++WSAD + L +G D+ ++VW + T
Sbjct: 266 DPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG++ A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + +++SGS+D T+KVW I+ Q L L GH
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+++K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K + V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 441 P------GHADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
A E AV WS DG+ + +G D V+++W
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF 241
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 242 SLAFSPN 248
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 132/348 (37%), Gaps = 67/348 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW-- 387
+ S D + LW A K T Q V + FSP+ W+A+A+ IK++
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 265
Query: 388 ------NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429
+ +F + ++WSAD + L +G D+ ++VW
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 24 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + +++SGS+D T+KVW I+ Q L L GH
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LLGHN 142
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+++K W
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 62
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 123 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 152
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 153 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K + V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 268
Query: 441 P------GHADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
A E AV WS DG+ + +G D V+++W
Sbjct: 269 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 66 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 119 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVF 235
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 236 SLAFSPN 242
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 134/352 (38%), Gaps = 67/352 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 119
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 204
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW-- 387
+ S D + LW A K T Q V + FSP+ W+A+A+ IK++
Sbjct: 205 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 259
Query: 388 ------NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433
+ +F + ++WSAD + L +G D+ ++VW + T
Sbjct: 260 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 133 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 192
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLWN-LAAKKAMYTLSAQDE-VFSLAF------SPNRY 244
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 245 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 264 KVWE 267
+VW+
Sbjct: 305 RVWQ 308
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 292 GQTLFAGYTDNVIRVWQVMT 311
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 68/350 (19%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-- 205
GH V + W+ + +VS S+ G L W+ T + + + + H W+ ++ P
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQS 122
Query: 206 -----LNAPCRRF---VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255
L++ C F A +DG+ + V L+GH + ++ D +
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRV--------LTGHKGYASSCQYVPDQETRLI 174
Query: 256 TGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
TGS D T +W+ T G+ I GH + L+LS
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS---------------------- 212
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
N + N +SGS D T+ LW+ ++ + GH+ +N V F PDG
Sbjct: 213 --------INSLNANM---FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQISWSADSRLLLSGSKDST 425
Q + S D + +L++ TG + V+ + V +++S RLL +G +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 426 LKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
VWD ++ +L H + + S DG + +G D+ LK+W
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH+ V S+ ++P+ + S S D + +W+ T H WV+ A++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 160 ADGKHLVSGSKAGELQCW------DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+G+ + G + D P L+GHK + + + P R
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET----RL 173
Query: 214 VSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKWG--GDGVIYTGSQDCTIKVW 266
++ S D +WDV+ + + SGHT V + + +GS D T+++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 267 ET-TQGKLIRELKGHGHWVNSLALSTE---------------YALRTGAFDHTGKQYSSP 310
+ + +R GH +NS+ + + +RTG H + Y+
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290
Query: 311 EEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHV 366
+ L + + RL+ +G + ++W+ +++ T H+ ++ +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 367 YFSPDGQWVASASFDKSIKLW 387
S DG + + S+DK++K+W
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456
+GH G VY + W+ + ++S S+D L VW+ T + + H V ++P+G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 457 EKVASGGKDRVLKLW 471
+ VA GG D ++
Sbjct: 121 QSVACGGLDSACSIF 135
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTPMFKCTGHKN 151
+R +R T GH + SV F PDG++ +GS D T RL+D+ T Q ++ +N
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294
Query: 152 -----WVLCIAWSADGKHLVSGSKAGELQCWD 178
V +A+S G+ L +G G+ WD
Sbjct: 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444
+LW+ TG+ F GH V + + ++SGS+D T+KVW I+ Q L L GH
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT-LLGHN 148
Query: 445 DEVFAVDWSP------DGEKVASGGKDRVLKLW 471
D V V P D + S G D+ +K W
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 136/339 (40%), Gaps = 55/339 (16%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKXVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440
D I LWN K V+ +++S + R L+ + + +KV+ + Q L DL
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPN-RYWLAAATATGIKVFSLDPQYLVDDL 274
Query: 441 P------GHADEVFAVD--WSPDGEKVASGGKDRVLKLW 471
A E AV WS DG+ + +G D V+++W
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
+ A F GH + ++ S D L+ S KD + +W++ +K L DEVF
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVF 241
Query: 449 AVDWSPD 455
++ +SP+
Sbjct: 242 SLAFSPN 248
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 134/352 (38%), Gaps = 67/352 (19%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVX-----SVDIDKKASXIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW-- 387
+ S D + LW A K T Q V + FSP+ W+A+A+ IK++
Sbjct: 211 --IASAGKDGEIXLWNLAAKKAXYT--LSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSL 265
Query: 388 ------NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433
+ +F + ++WSAD + L +G D+ ++VW + T
Sbjct: 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWN-LAAKKAXYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVXT 317
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
K + P R++SGSDD T+ ++E K K+ H + V+ V ++PDG AS D +
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 213
Query: 384 IKLWNGTTGKFVAVFR-------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
I L+NG G VF H G V+ ++WS D + S S D T+K+W++ T K+
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273
Query: 437 KQDLP 441
++ +P
Sbjct: 274 EKTIP 278
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 163/423 (38%), Gaps = 45/423 (10%)
Query: 83 SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
S+ ++P FRI P + +T HT+ V SV ++PDG AS GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
T+ L++ T+T +F K H V + WS DG + S S ++ W+ T
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
K P G + + GI W + VS S +G + L
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYAL 295
GH A+T + DG +++ + I W+ + G R H + + +++ L
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
T ++D K + ++ NK+ VS D + ++ +
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441
Query: 356 MTGHQQLVNH--VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQISWS 411
+T N V S D Q+VA D + ++ +G V+ + V P + +++S
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK-LSGASVSEVKTIVHPAEITSVAFS 500
Query: 412 ADSRLLLSGSKDSTLKVWDIRTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468
+ L++ + + + + H +V V WSPD ++A+G D +
Sbjct: 501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560
Query: 469 KLW 471
+W
Sbjct: 561 IVW 563
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 163/389 (41%), Gaps = 41/389 (10%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H+ +V + +SPDG ++AS S D T+++W++ T + + T ++ L I W+
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-- 294
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ LVS S G + +P+ G GH K IT +S +A + SA +G
Sbjct: 295 QALVSISANGFINFVNPELGSID-QVRYGHNKAITALS-----SSADGKTLFSADAEGHI 348
Query: 223 RIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
WD+S + H +T +K G ++T S D +KV G + K
Sbjct: 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP-AGGSGVDSSKAVA 407
Query: 282 HWVNS----LALSTEYALRTGA-FDHT-----GKQYSSPEEMKKAALERYNKIKGNAPER 331
+ ++S LA+S + + A + H GK P + + N +
Sbjct: 408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND-----KQF 462
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI---KLWN 388
+ G D + +++ + + + + H + V FS +G ++ + + + + N
Sbjct: 463 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-----GH 443
+ H V +SWS D+ L +GS D+++ VW++ D P H
Sbjct: 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK---PSDHPIIIKGAH 579
Query: 444 A-DEVFAVDWSPDGEKVASGGKDRVLKLW 471
A V +V W + + S G+D +K W
Sbjct: 580 AMSSVNSVIWLNE-TTIVSAGQDSNIKFW 607
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 157/412 (38%), Gaps = 52/412 (12%)
Query: 86 YQPQAVFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144
+ A+F P R +A + G+T A D Q +G+ TV + L T T ++
Sbjct: 4 FSQTALFPSLPRTARGTAVVLGNTPA-------GDKIQYCNGTSVYTVPVGSL-TDTEIY 55
Query: 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPSGNPLSGHKKWITGISWEP 203
T H + S G + SG G ++ WD QT + + ISW+
Sbjct: 56 --TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD- 112
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LSGHTLAVTCVKWGGDG--VIYTGS 258
+ +R ++A +G R V L L+G A+ V + I +GS
Sbjct: 113 ----SESKR-IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL--RTGAFDHTGKQYSSPEEMKKA 316
D T+ ++E K H +V+S+ + + +L TG D T Y+ + K
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTG 226
Query: 317 ALERYNKIKGNA-----------PE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV 363
E + +K A P+ ++ S S D T+ +W A K KT G +
Sbjct: 227 VFED-DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
+ Q + S S + I N G V GH + +S SAD + L S +
Sbjct: 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345
Query: 424 STLKVWDIRTQKLKQDLPG-HAD-----------EVFAVDWSPDGEKVASGG 463
+ WDI T + P HA ++F V W + V +GG
Sbjct: 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 55/165 (33%)
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF-----VAVFRGHVGPVYQISWSAD 413
HQ V SP G + AS ++++W+ T + VF GPV ISW ++
Sbjct: 60 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKDISWDSE 114
Query: 414 SR---------------------------------------------LLLSGSKDSTLKV 428
S+ ++SGS D+T+ +
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 429 WDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
++ K K H V +V ++PDG AS G D + L+ G
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
+ E+ + + N P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V + +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
TLK+W+ T K+++ L + + + P G K +ASG + L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
F W+ S D I+++N TG+ V F H + I+ +LSGS D T+K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
+W+ L+Q GH V V ++P D ASG DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + V + F P WV + + +++WN T V + PV + A
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
++ GS D ++V++ T + D H D + ++ P V SG D +KLW
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
+ E+ + + N P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V + +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
TLK+W+ T K+++ L + + + P G K +ASG + L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
F W+ S D I+++N TG+ V F H + I+ +LSGS D T+K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
+W+ L+Q GH V V ++P D ASG DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + V + F P WV + + ++LWN T V + PV + A
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
++ GS D ++V++ T + D H D + ++ P V SG D +KLW
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
+ E+ + + N P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V + +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
TLK+W+ T K+++ L + + + P G K +ASG + L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
F W+ S D I+++N TG+ V F H + I+ +LSGS D T+K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
+W+ L+Q GH V V ++P D ASG DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + V + F P WV + + ++LWN T V + PV + A
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
++ GS D ++V++ T + D H D + ++ P V SG D +KLW
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCS----ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYS---- 308
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 309 -SPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
+ E+ + + N P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V + +++SGS+D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG 473
TLK+W+ T K+++ L + + + P G K +ASG + L +G
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
F W+ S D I+++N TG+ V F H + I+ +LSGS D T+K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLW 471
+W+ L+Q GH V V ++P D ASG DR +K+W
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412
K + V + F P WV + + ++LWN T V + PV + A
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
++ GS D ++V++ T + D H D + ++ P V SG D +KLW
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
+LS+A+SPDG+ LASG+ D + ++D+ T + GH + + +S D + LV+ S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230
G ++ +D Q +G LSGH W+ +++ P FVS+S D ++WDV R
Sbjct: 227 DGYIKIYDVQHANLAGT-LSGHASWVLNVAFCP-----DDTHFVSSSSDKSVKVWDVGTR 280
Query: 231 KCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWE 267
CV H V VK+ G+G I + D I +++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 238 GHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
H A+ V WG + + TGS D +KVW+ +L + GH + +++
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 293 YALRTGAFD-----------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
+ L A GKQ S + ++ + + L +G+ +
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401
++ K+ + T + + + +SPDG+++AS + D I +++ TGK + GH
Sbjct: 147 NIFGVESGKKEYSLDT-RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455
P+ +++S DS+LL++ S D +K++D++ L L GHA V V + PD
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
++ GH V+SV S AS S D +RLWDL + +A+S D
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
++L +G+ G++ + ++GK L K+I I++ P + S + DG
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
I+D++ K + L GH + + + + D ++ T S D IK+++ L L GH
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
WV ++A
Sbjct: 249 SWVLNVAF 256
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 16/270 (5%)
Query: 214 VSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ 270
V+ S D ++W + + L GH L V V + + S D I++W+
Sbjct: 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Query: 271 GKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIK- 325
GK I+ + W + + ++Y L TG H GK + K+ +L+ K
Sbjct: 112 GKQIKSIDAGPVDAWTLAFSPDSQY-LATGT--HVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 326 --GNAPE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
+P+ L SG+ D + +++ A K T + GH + + FSPD Q + +AS D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 441
IK+++ GH V +++ D +S S D ++KVWD+ T+
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 442 GHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
H D+V+ V ++ +G K+ S G D+ + ++
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 81 VLSIVYQPQA-------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
+LSI Y P +F I + T+ GH + S+ FSPD + L + S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
D ++++D+ +GH +WVL +A+ D H VS S ++ WD T + +
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVH 284
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
H+ + G+ + N + VS D + I+D
Sbjct: 285 TFFDHQDQVWGVKY-----NGNGSKIVSVGDDQEIHIYD 318
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 399 RGHVGPVYQISWSAD----SRLLLSGSKDSTLKVWDIRTQK--LKQDLPGHADEVFAVDW 452
+ H ++ ++W + S +++GS D +KVW R ++ L+ L GH V +VD
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 453 SPDGEKVASGGKDRVLKLW 471
S AS D ++LW
Sbjct: 89 SHTLPIAASSSLDAHIRLW 107
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 29/248 (11%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
++GG G + TG +C IK+ + R + + H + + S++ + FD+T K
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
+ P+ E R ++ +G N L+S SDD T+ LW+ P K
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
K TGH +V V + S + D+ + +W+ TT K + H V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 463
+S++ S +L +GS D T+ +WD+R KLK H DE+F V WSP E + AS G
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 464 KDRVLKLW 471
DR L +W
Sbjct: 340 TDRRLNVW 347
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPLS-GHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D +IW ++
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIMQIWQMA 407
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLMIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 29/248 (11%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
++GG G + TG +C IK+ + R + H + + S++ + FD+T K
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
+ P+ E R ++ +G N L+S SDD T+ LW+ P K
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
K TGH +V V + S + D+ + +W+ TT K + H V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 463
+S++ S +L +GS D T+ +WD+R KLK H DE+F V WSP E + AS G
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 464 KDRVLKLW 471
DR L +W
Sbjct: 340 TDRRLNVW 347
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPLS-GHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIW 225
+ SW P N P S S+D +IW
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIXQIW 404
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLXIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
L+S SDD T+ LW+ + + + H D W S + D+ +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
+W N T K H V +S++ S +L +GS D T+ +WD+R KLK
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
H DE+F V WSP E + AS G DR L +W
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPLS-GHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 382 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 409
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 233 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 289 SEFILATGSADKTVALWDLRNLKL 312
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 237 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 288
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 289 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 345 RLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
L+S SDD T+ LW+ + + + H D W S + D+ +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
+W N T K H V +S++ S +L +GS D T+ +WD+R KLK
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
H DE+F V WSP E + AS G DR L +W
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPLS-GHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 384 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 411
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 235 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 291 SEFILATGSADKTVALWDLRNLKL 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 239 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 290
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 291 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 347 RLHVWDLSK 355
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+SGS D T+ +W+ +Q P +TGH V+ + S + + S+S+DK+++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI--RTQKLKQDLPGH 443
LW+ TG F GH VY +++S D+R +LS + +K+W+I + + H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 444 ADEVFAVDWSP---DGEKV-------ASGGKDRVLKLW 471
+D V V +SP KV AS G D LK+W
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 106/265 (40%), Gaps = 70/265 (26%)
Query: 236 LSGHTLAVTCVKWG-------GDGVIYTGSQDCTIKVWETTQ-------GKLIRELKGHG 281
L GH+ VT + G V+ +GS+D T+ +W+ + G + L GH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
H+V+ LALS E +S S D T+
Sbjct: 77 HFVSDLALSQENCF------------------------------------AISSSWDKTL 100
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFR 399
LW+ K R GHQ V V FSPD + + SA ++ IKLWN G A
Sbjct: 101 RLWDLRTGTTYK-RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Query: 400 GHVGPVYQISWSADSRLLLSGSK-------------DSTLKVWDIRTQKLKQDLPGHADE 446
H V + +S ++ S +K D LKVW+ Q ++ H
Sbjct: 160 NHSDWVSCVRYSP---IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESN 215
Query: 447 VFAVDWSPDGEKVASGGKDRVLKLW 471
V + SP+G+ +A+GGKD+ L +W
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIW 240
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH V +A S + S S D T+RLWDL T T + GH++ V +A+S D +
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 164 HLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAP-----CRRFVSAS 217
++S E++ W+ K S H W++ + + P+ +A F S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
DG ++W+ + + H V + +G I TG +D + +W+ +
Sbjct: 192 WDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 277 LKGHGHWVNSLALS 290
G +N +A +
Sbjct: 251 EFDAGSTINQIAFN 264
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 148/372 (39%), Gaps = 90/372 (24%)
Query: 104 IAGHTEAVLSVA--FS----PDGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHK 150
+ GH++ V S+ FS D L SGS D TV +W L + P TGH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
++V +A S + +S S L+ WD +TG + GH+ + +++ P +
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDN----- 130
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ-------- 259
R+ +SA + + ++W++ L +C + H+ V+CV++ ++ + ++
Sbjct: 131 RQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYS--PIMKSANKVQPFAPYF 187
Query: 260 -----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314
D +KVW T ++ K H VN L++S GK
Sbjct: 188 ASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISP-----------NGK--------- 226
Query: 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
+ +G D + +W+ P+ R +N + F+P QW
Sbjct: 227 ----------------YIATGGKDKKLLIWDILNLTYPQ-REFDAGSTINQIAFNPKLQW 269
Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ-------------ISWSADSRLLLSGS 421
VA + D+ +K++N T V P+ + ++W+A + L +G
Sbjct: 270 VAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328
Query: 422 KDSTLKVWDIRT 433
D ++ + T
Sbjct: 329 TDGVIRTFSFET 340
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 140/350 (40%), Gaps = 62/350 (17%)
Query: 148 GHKNWVLCIAW------SADGKHLVSGSKAGELQCWDPQTGKPSG------NPLSGHKKW 195
GH +WV I + D L+SGS+ + W + +G L+GH +
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254
++ ++ + A +S+S D R+WD+ GH V V + D I
Sbjct: 79 VSDLALSQENCFA-----ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 255 YTGSQDCTIKVWETT-QGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
+ + IK+W + K E + H WV+ + +YS
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV------------------RYSPI-- 173
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
MK A NK++ AP G D + +W + Q + H+ VNH+ SP+G
Sbjct: 174 MKSA-----NKVQPFAPYFASVGWDG-RLKVWN--TNFQIRYTFKAHESNVNHLSISPNG 225
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432
+++A+ DK + +W+ + + QI+++ + + G+ D +K++++
Sbjct: 226 KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLM 284
Query: 433 TQK-------------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 469
TQ + G + ++ W+ G+K+ +G D V++
Sbjct: 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR 334
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 92 FRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137
F+IR T H V ++ SP+G+ +A+G D + +WD+
Sbjct: 203 FQIR------YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-------VASASFDKSI 384
L+S SDD T+ LW+ + + + H D W S + D+ +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 385 KLW---NGTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-QD 439
+W N T K H V +S++ S +L +GS D T+ +WD+R KLK
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
H DE+F V WSP E + AS G DR L +W
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 386 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 413
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 237 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 293 SEFILATGSADKTVALWDLRNLKL 316
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 241 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 292
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 293 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 349 RLHVWDLSK 357
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 331 RLVSGSDDFTMFLWE-PAVSKQ-----PKTRMTGHQQLVNHV-YFSPDGQWVASASFDKS 383
L+S SDD T+ LW+ AV K+ KT TGH +V V + S + D+
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 384 IKLWN---GTTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQKLK-Q 438
+ +W+ T K H V +S++ S +L +GS D T+ +WD+R KLK
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 439 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
H DE+F V WSP E + AS G DR L +W
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S ++ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 151 NWVLCIAWSADGKHLVSGSKAG-ELQCWD---------PQTGKPSGNPL----SGHKKWI 196
+ + + WS + +++ S L WD P+ + L GH I
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 378 SDFSWNP---NEPW-VICSVSEDNIMQVWQMA 405
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 141 TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHK 193
P + GH+ ++W+ + HL+S S + WD P+ GK + +GH
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG- 249
+ +SW +H + F S + D IWD + K + HT V C+ +
Sbjct: 228 AVVEDVSWHLLHESL----FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP 283
Query: 250 -GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 284 YSEFILATGSADKTVALWDLRNLKL 308
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 112/298 (37%), Gaps = 76/298 (25%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
P PSG NP L GH+K G+SW P +L+ +SAS D +WD+S
Sbjct: 158 PSKPDPSGECNPDLRLRGHQKEGYGLSWNP-NLSG---HLLSASDDHTICLWDISAVPKE 213
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
+ +GHT V V W + + + + D + +W+T K + H
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
VN L+ + +E+ L T GS D
Sbjct: 274 AEVNCLSFNPYSEFILAT-------------------------------------GSADK 296
Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT------- 391
T+ LW+ K H+ + V +SP + + AS+ D+ + +W+ +
Sbjct: 297 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Query: 392 -------GKFVAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKLKQDLP 441
+ + + GH + SW+ + ++ S S+D+ ++VW + + P
Sbjct: 357 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDP 414
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 128
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
T HQ V V + P + + D+ I++WN +G ++ H V I
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 247
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
WS + L+SG + L +W T +L GH V ++ SPDG VAS D
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 468 LKLW 471
L+LW
Sbjct: 308 LRLW 311
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W++ L SG
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 180
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 241 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 263
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + + GH V + SPDG VASA+ D++++LW
Sbjct: 264 NQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
D +++LW + + +M + ++ V + +G ++A + ++LW+ K +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
H V +SW +S +L SGS+ + D+R + L GH+ EV + W+PD
Sbjct: 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 456 GEKVASGGKDRVLKLW 471
G +ASGG D ++ +W
Sbjct: 162 GRHLASGGNDNLVNVW 177
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 252
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 253 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
Query: 264 KVWE 267
++W
Sbjct: 309 RLWR 312
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 208
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
T HQ V V + P + + D+ I++WN +G ++ H V I
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
WS + L+SG + L +W T +L GH V ++ SPDG VAS D
Sbjct: 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 468 LKLW 471
L+LW
Sbjct: 388 LRLW 391
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 260
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 321 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 343
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 344 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
D +++LW + + +M + ++ V + +G ++A + ++LW+ K +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
H V +SW +S +L SGS+ + D+R + L GH+ EV + W+PD
Sbjct: 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 456 GEKVASGGKDRVLKLW 471
G +ASGG D ++ +W
Sbjct: 242 GRHLASGGNDNLVNVW 257
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 332
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 333 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Query: 264 KVWE 267
++W
Sbjct: 389 RLWR 392
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 17/244 (6%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 219
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409
T HQ V V + P + + D+ I++WN +G ++ H V I
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 338
Query: 410 WSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
WS + L+SG + L +W T +L GH V ++ SPDG VAS D
Sbjct: 339 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 468 LKLW 471
L+LW
Sbjct: 399 LRLW 402
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 216
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 271
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 332 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 354
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 355 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 338 DFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
D +++LW + + +M + ++ V + +G ++A + ++LW+ K +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPD 455
H V +SW +S +L SGS+ + D+R + L GH+ EV + W+PD
Sbjct: 195 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 456 GEKVASGGKDRVLKLW 471
G +ASGG D ++ +W
Sbjct: 253 GRHLASGGNDNLVNVW 268
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 343
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 344 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Query: 264 KVWE 267
++W
Sbjct: 400 RLWR 403
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSR 415
GHQ+ V V +SP G ++ASASFD + +W F V GH V ++W+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 416 LLLSGSKDSTLKVWDIRTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
LL + S+D ++ VW++ + + L H +V V W P E +AS D +KL+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 29/235 (12%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSK 170
+A++P G LAS GD +R+W + + K GH+ V +AWS G +L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 171 AGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVS 228
W Q L GH+ + ++W P +L A C S+D +W+V
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC------SRDKSVWVWEVD 135
Query: 229 LR---KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI--RELKGHGH 282
+CV L+ HT V V W ++ + S D T+K++ + + L+GH
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
V SL AFD +G++ +S + + + R + GN SGSD
Sbjct: 196 TVWSL-----------AFDPSGQRLASCSDDRTVRIWR-QYLPGNEQGVACSGSD 238
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD 161
GH V VA+SP G LAS S D T +W N F+C GH+N V +AW+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS 116
Query: 162 GKHLVSGSKAGELQCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
G L + S+ + W D + + L+ H + + + W P SAS D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-----ELLASASYD 171
Query: 220 GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW 266
+++ V C L GH V + + G + + S D T+++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVA---VFRGHVGPVYQISWSADSRLLLSGSKDS 424
++P G +AS D+ I++W ++ + GH V +++WS L S S D+
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 425 TLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
T +W + L GH +EV +V W+P G +A+ +D+ + +W
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 36/224 (16%)
Query: 66 PLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLAS 125
P G+YL S + I + Q F C T+ GH V SVA++P G LA+
Sbjct: 71 PCGNYLAS--ASFDATTCIWKKNQDDFE------CVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 126 GSGDTTVRLWDLNTQTPMFKC----TGHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQ 180
S D +V +W+++ + ++C H V + W + L S S ++ + + +
Sbjct: 123 CSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---------- 230
L GH+ + ++++P +R S S D RIW L
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGNEQGVACSG 236
Query: 231 -----KCVICLSG-HTLAVTCVKWGG-DGVIYTGSQDCTIKVWE 267
KC+ LSG H+ + + W G + T D I+V++
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD-----------LNTQTPMFKCTG 148
C AT+ GH V S+AF P G++LAS S D TVR+W + P +KC
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245
Query: 149 -----HKNWVLCIAWSADGKHLVSGSKAGELQCW------DPQ--TGKPSGNPLSGHKKW 195
H + IAW L + ++ + DPQ T + + H +
Sbjct: 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIW 225
+ ++W P S S DG+ W
Sbjct: 306 VNCVAWNPKEPGL----LASCSDDGEVAFW 331
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
V SV +S DG L+ G G+ V ++D+ +QT + GH+ V C++W+ +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
++G + D + L GH + G++W L + S D +IWD
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
+ H AV V W ++ T G+ D I W G + + G V
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
SL S S E M G D + +W
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
+ S K + H V + SPDG+ +++A+ D+++K W G V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 33/251 (13%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY---ALRTG 298
V VKW DG + G + + +++ +R + GH V L+ + R+G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVSGSDDFTMFLWEPA 347
A H + A + ++G++ E +L SG +D + +W+ A
Sbjct: 197 AIHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-A 246
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGP 404
S PK T H V V + P +A+ + DK I WN TG V
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ 305
Query: 405 VYQISWSADSRLLLS--GSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVA 460
V + WS S+ ++S G D+ L +W + L + D+P H V SPDG ++
Sbjct: 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS 365
Query: 461 SGGKDRVLKLW 471
+ D LK W
Sbjct: 366 TAASDENLKFW 376
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
+R N T+ GH+ V +A+ DG QLASG D V++WD + P F T H V
Sbjct: 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 154 LCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
+AW +L++ G+ ++ W+ TG +G + +T + W P
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSP-----HS 315
Query: 211 RRFVSAS--KDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265
+ +S D + IW S + + H V DG ++ T + D +K
Sbjct: 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 266 WETTQGKLIRE 276
W G ++
Sbjct: 376 WRVYDGDHVKR 386
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 27/232 (11%)
Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIREL 277
+G I+DV + + ++GH V C+ W V+ +GS+ I + I L
Sbjct: 155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 278 KGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-- 334
+GH V LA ++ L +G D+ + + + ++++ ++ K NA + V+
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA-----RSSIPKFTKTNHNAAVKAVAWC 268
Query: 335 -----------GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--D 381
G+ D + W A + T G Q V + +SP + + S D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPD 326
Query: 382 KSIKLWNGTTGKFV--AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
++ +W+ ++ H V + S D R+L + + D LK W +
Sbjct: 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 42/139 (30%)
Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQISWSADSRLLLSGSKDSTLKVWDIRT 433
V + + ++++ +WN +G A+ V + WS D L G + + ++D+ +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 434 Q-KLKQ----------------------------------------DLPGHADEVFAVDW 452
Q KL+ L GH+ EV + W
Sbjct: 166 QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 453 SPDGEKVASGGKDRVLKLW 471
DG ++ASGG D V+++W
Sbjct: 226 RSDGLQLASGGNDNVVQIW 244
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 128/333 (38%), Gaps = 55/333 (16%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
H E V +V S R + +G G V++WD++ ++P+ C N++ D
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L+ G +A L WD P L+ ++ P + S DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
+ +WD+ + V GHT +C+ DG ++TG D T++ W+ +G+ +++
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
H S S Y TG + G + S+ E +
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLH------------------------- 252
Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399
V+K K ++ H+ V + F+ G+W S D + W G ++F+
Sbjct: 253 --------VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQ 302
Query: 400 G-HVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
V S D + +++GS D V+++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 370 PDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427
PDG + ++ +W+ T + A Y ++ S DS++ S D +
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
VWD+ Q L + GH D +D S DG K+ +GG D ++ W
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 332 LVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
L+ G + T+ +W+ A + + K +T + SPD + S D +I +W+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 391 TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFA 449
V F+GH I S D L +G D+T++ WD+R ++L+Q ++F+
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFS 229
Query: 450 VDWSPDGEKVASG 462
+ + P GE +A G
Sbjct: 230 LGYCPTGEWLAVG 242
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P R A + A ++A SPD + S D + +WDL+ QT + + GH + C
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGK 183
I S DG L +G ++ WD + G+
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGR 216
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
H + V +V+ G Q SGS D +++WDL Q + H V C+A S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
+S S+ + WD + KP+ ++ T ++W P FV ++G +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
D CV+ + H+ VT + + V + S+DC++ V +++ +L R + H
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
+V S L T +DH + P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLL 417
H +V+ V G S S D IK+W+ ++ +R H V ++ S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 418 LSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKD 465
LS S+D+ + +WD R K + PG+ A W P +V G +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA--WHPQQSEVFVFGDE 235
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 378 ASFDKSIKLWNGTTGKFVAVFR----GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433
AS +++LW + + V + H V +S + +SGSKD +KVWD+
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 434 QKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
Q + HA +V V SP + V S +D + LW
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
I++ N T + + + GH + ++ + D LLLS SKD L++W+I+T L
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ GH DEV + D+ GEK+ S G D LKLW
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 198
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
V + ++S D +LK+W I ++++
Sbjct: 199 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
I++ N T + + + GH + ++ + D LLLS SKD L++W+I+T L
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ GH DEV + D+ GEK+ S G D LKLW
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
V + ++S D +LK+W I ++++
Sbjct: 158 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
I++ N T + + + GH + ++ + D LLLS SKD L++W+I+T L
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ GH DEV + D+ GEK+ S G D LKLW
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
V + ++S D +LK+W I ++++
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
I++ N T + + + GH + ++ + D LLLS SKD L++W+I+T L
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ GH DEV + D+ GEK+ S G D LKLW
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
V + ++S D +LK+W I ++++
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLW------DLNTQTPMFKCT-GHKNWVLCIAW 158
H +A+ SVA+ P LA+GS D+TV +W D + + GH+N V +AW
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 159 SADGKHLVSGSKAGELQCWD-PQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVS 215
S DG +L + S+ + W+ ++G+ + L H + + + W P S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-----ALLAS 170
Query: 216 ASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD-----GV--IYTGSQDCTIKVW 266
+S D RIW +CV L+GH V W D GV + +GS D T++VW
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVW 226
Query: 267 E 267
+
Sbjct: 227 K 227
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L +GS D T+ +W S M GH+ V V +S DG ++A+ S DKS+
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 386 LW----NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK--QD 439
+W +G + ++V + H V + W LL S S D T+++W +
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 440 LPGHADEVFAVDWSPDGEK------VASGGKDRVLKLW 471
L GH V WS D +K + SG D +++W
Sbjct: 193 LNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%)
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---- 392
DDFT+ T H++ + V + P +A+ SFD ++ +W
Sbjct: 44 DDFTLI---------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94
Query: 393 ---KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD----LPGHAD 445
+A+ GH V ++WS D L + S+D ++ +W+ + + L H+
Sbjct: 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 446 EVFAVDWSPDGEKVASGGKDRVLKLW 471
+V V W P +AS D +++W
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
S + +SI + ++ R ++ A I GH V VA+S DG LA+ S D +V +W+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
+ ++C H V + W L S S ++ W D L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISWEP-VHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
H+ G W R S S D R+W D ++ +C + H
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
V V WG +G+I + D + V+E G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 375 VASASFDKSIKLWNGTTGKFVAV----FRGHVGPVYQISWSADSRLLLSGSKDSTLKVW- 429
+A+ S D+ IKL + F + H + ++W + LL +GS DST+ +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 430 --DIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ + + DL GH +EV V WS DG +A+ +D+ + +W
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 94/256 (36%), Gaps = 58/256 (22%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRL----WDLNTQTPMFKCTGHKNWVLCIAWSADG 162
+ E + S FS LA+GS D ++L +D T + T HK + +AW
Sbjct: 13 YKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT 70
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSA 216
L +GS + W + + GH+ + G++W + +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-----SNDGYYLATC 125
Query: 217 SKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQG 271
S+D IW+ +C+ L H+ V V W + ++ + S D T+++W+
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 272 --KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
+ + L GH S+++ G F
Sbjct: 186 DWECVAVLNGH----EGTVWSSDFDKTEGVF----------------------------- 212
Query: 330 ERLVSGSDDFTMFLWE 345
RL SGSDD T+ +W+
Sbjct: 213 -RLCSGSDDSTVRVWK 227
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 29/189 (15%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
C + + H++ V V + P LAS S D TVR+W ++C N W
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW--KDYDDDWECVAVLNGHEGTVW 201
Query: 159 SADGK------HLVSGSKAGELQCW--------DPQTGKPSGNPLSGHKKWITGISWE-- 202
S+D L SGS ++ W D Q HK+ + ++W
Sbjct: 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN 261
Query: 203 --PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW---GGDGVIYTG 257
+ A V DG+ ++ K +C + + V VKW G ++ TG
Sbjct: 262 GLIASVGADGVLAVYEEVDGEWKV----FAKRALCHGVYEINV--VKWLELNGKTILATG 315
Query: 258 SQDCTIKVW 266
D + W
Sbjct: 316 GDDGIVNFW 324
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGSKDSTLKVWDIRTQKLKQ---D 439
I++ N T + + + GH + ++ + D LLLS SKD L++W+I+T L
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
+ GH DEV + D+ GEK+ S G D LKLW
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
V + ++S D +LK+W I ++++
Sbjct: 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 26/305 (8%)
Query: 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW--DVSLRKCVIC 235
DP TG L GH + + S S+DG R+W D V+
Sbjct: 3 DPFTGYQLSATLKGHD------QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY 56
Query: 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VWETTQGKLIRELKGHGHWVNSLALSTE 292
L C + +++ G +D I ++ T+ + L GH V SL+
Sbjct: 57 TGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG 115
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYN------KIKGNAPERLVSGSDDFTMFLWEP 346
+ +G++D T K + E L+ +N K+ + + ++ S D T+ LW+
Sbjct: 116 VVI-SGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406
K KT H +V H+ DG ++ S S D IKL + TG + + GH VY
Sbjct: 173 --DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466
I + ++ G +D T+++W LKQ + A +++VD +G+ + G D
Sbjct: 230 CIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDN 287
Query: 467 VLKLW 471
+++++
Sbjct: 288 LVRIF 292
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH V S++F DG + SGS D T ++W + + W + ++
Sbjct: 99 TLIGHQGNVCSLSF-QDG-VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDG 220
K L + S ++ W Q K K +GI + V A F+S S DG
Sbjct: 157 KFL-TASADKTIKLW--QNDKV--------IKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273
++ D + GH V C+K +G I + +D T+++W G L
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 55/289 (19%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
S + + T +S++P + PC + FV DGD+++ V+ +GH + VT
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
VK+ G + +G + + VW T K ++ + + +E+ + G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
++D G++ E + +R N +K + P R ++
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
DD ++ ++ K + T H+Q V V FSPD G++V + D+ I ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPV----YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438
F+ PV + +SW DS+ + D+T++VWD+ T K Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ 288
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 36/191 (18%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFDHTGKQYSS 309
++D ++SS
Sbjct: 354 SYDGRIMEWSS 364
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 135/355 (38%), Gaps = 47/355 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV--------------------HLNAPCRRFV 214
++ + +SGH K IT ++ P+ H N
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380
Query: 215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
S +++ + WD +L+ I DG + D + + ++ G +I
Sbjct: 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440
Query: 275 R--ELKGHGHWV----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
+ L G V N +A+ E F + + S ++K + + I +
Sbjct: 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP 498
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSP----------DGQWVAS 377
E ++ D L S++ KT R +N + + P + VA+
Sbjct: 499 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558
Query: 378 ASFDKSIKLWN-GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
S D +I +++ K + H V + W S L+ SG+ D+ +K W++
Sbjct: 559 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRWNV 612
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 55/289 (19%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
S + + T +S++P + PC + FV DGD+++ V+ +GH + VT
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
VK+ G + +G + + VW T K ++ + + +E+ + G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
++D G++ E + +R N +K + P R +
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
DD ++ ++ K + T H+Q V V FSPD G++V + D+ I ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPV----YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438
F+ PV + +SW DS+ + D+T++VWD+ T K Q
Sbjct: 241 FLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ 288
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFD 301
++D
Sbjct: 354 SYD 356
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 135/355 (38%), Gaps = 47/355 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV--------------------HLNAPCRRFV 214
++ + +SGH K IT ++ P+ H N
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPLISGSYDGRIXEWSSSSXHQDHSNLIVSLDN 380
Query: 215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
S +++ + WD +L+ I DG + D + + ++ G +I
Sbjct: 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440
Query: 275 R--ELKGHGHWV----NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
+ L G V N +A+ E F + + S ++K + + I +
Sbjct: 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP 498
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSP----------DGQWVAS 377
E ++ D L S++ KT R +N + + P + VA+
Sbjct: 499 SETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558
Query: 378 ASFDKSIKLWN-GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431
S D +I +++ K + H V + W S L+ SG+ D+ +K W++
Sbjct: 559 GSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGA-DACIKRWNV 612
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270
V+ ++G+ R+W+ + + L+ H + VKW DG +I ++ TI +W
Sbjct: 123 IVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI-LWNVIS 180
Query: 271 GKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G +++ ELK G A +H+G + ++
Sbjct: 181 GTVMQHFELKETG------------GSSINAENHSGDGSLGVD------------VEWVD 216
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
++ V +F+++ K P ++ GH ++ + F+ + + SAS D ++++W+
Sbjct: 217 DDKFVIPGPKGAIFVYQ-ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Query: 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448
G G F GH + SW D + ++S S D ++++W ++ L +F
Sbjct: 276 GGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334
Query: 449 AVDWSPDGEKVA 460
A S DG+K A
Sbjct: 335 AGRISQDGQKYA 346
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC-------------TGHKN 151
H ++SV ++ DG + S + LW++ + T M F+ +G +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ + W D K ++ G K G + + P+G L GH I+ + N +
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG-KLIGHHGPIS-----VLEFNDTNK 260
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
+SAS DG RIW C GH+ ++ W GD + + S D ++++W Q
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
L+ +L++ + G G++Y+ + Y+ K N+ R
Sbjct: 321 TLL-----------ALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSR 367
Query: 332 LVSGSDD 338
+ G+ D
Sbjct: 368 SLYGNRD 374
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 118/304 (38%), Gaps = 41/304 (13%)
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
N V C+AWS DG +V+G + GEL+ W+ +TG N L+ H+ I + W N
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKW-----NKDG 161
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI----YTGSQDCTIKV- 265
+S + +W+V +SG + +K G I ++G + V
Sbjct: 162 THIISMDVENVTILWNV--------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
W +I KG + + TGK + NK+
Sbjct: 214 WVDDDKFVIPGPKG-----------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL- 261
Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+S SDD T+ +W + + GH Q + + D + V S S D S++
Sbjct: 262 ------LLSASDDGTLRIWHGG-NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHA 444
LW+ +A+ P++ S D + D + V+D++ K + L G+
Sbjct: 314 LWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373
Query: 445 DEVF 448
D +
Sbjct: 374 DGIL 377
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467
++WS D +++G ++ L++W+ +T L L H + +V W+ DG + S + V
Sbjct: 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172
Query: 468 LKLW 471
LW
Sbjct: 173 TILW 176
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 22/159 (13%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
+V+G ++ + LW + + H+ + V ++ DG + S + LWN +
Sbjct: 123 IVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180
Query: 392 GKFVAVFR-----------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434
G + F G +G + W D + ++ G K + V+ I +
Sbjct: 181 GTVMQHFELKETGGSSINAENHSGDGSLG--VDVEWVDDDKFVIPGPKGAIF-VYQITEK 237
Query: 435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473
L GH + ++++ + + S D L++W G
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN----------------TQTP 142
CS + GH + +L+V++SP LA+ S D+ V+LWD+ +Q
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
T H V + +++DG HL++ ++ W+ G+ N L + K + S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
+ C FV ++ V + + L GH V C + + +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
+DC I W
Sbjct: 354 RDCNILAW 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 134/331 (40%), Gaps = 62/331 (18%)
Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTP---MFKCTGHKNWVLCIAWSAD 161
H +V +V + P D S S D T+++WD NT QT F+ T + + + ++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---- 153
Query: 162 GKH--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
KH + G++ ++Q D ++G S + L GH++ I +SW P + +AS D
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYI----LATASAD 208
Query: 220 GDARIWDVSLRK-CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
++WDV C+I L H G + ++ T
Sbjct: 209 SRVKLWDVRRASGCLITLDQH----------------NGKKSQAVESANT---------- 242
Query: 279 GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL----- 332
H VN L +++ L T D+ + ++S + L Y K+ N+ + L
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN--GENTLVNYGKVCNNSKKGLKFTVS 300
Query: 333 VSGSDDFTMFLWEPAV------SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
S +F + + S + T + GH + V+ F + Q + S S D +I
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 387 WNGTTGKFV-----AVFRGHVGPVYQISWSA 412
W + + V + + P ++ +WS+
Sbjct: 361 WVPSLYEPVPDDDETTTKSQLNPAFEDAWSS 391
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 128/336 (38%), Gaps = 70/336 (20%)
Query: 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV------SLRKC-VICLSG------ 238
H I + EPV R +S DG ++D+ S C +C G
Sbjct: 42 HGGGINTLDIEPVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 239 HTLAVTCVKW--GGDGVIYTGSQDCTIKVWET----TQGKLIRELKGHGHWVNSLALSTE 292
H +V V+W G+ + S D T+KVW+T T E + H ++ +ST+
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS--PVSTK 155
Query: 293 YAL---------------RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
+ L ++G+ H Q E + + RY+ I L + S
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHI-LQGHRQEILAVSWSPRYDYI-------LATASA 207
Query: 338 DFTMFLWEP---------------AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
D + LW+ S+ ++ T H VN + F+ DG + + D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 383 SIKLWNGTTGKFVAVFRGHV------GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436
++LWN + G+ V G V G + +S S + ST+ V+ + + +
Sbjct: 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQ 326
Query: 437 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472
L GH V + + +++ SG +D + W+
Sbjct: 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 27/225 (12%)
Query: 101 SATIAGHTEAVLSVAFSPDGRQ---LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
+A + E V S SP + +A G+ V+L DL + + GH+ +L ++
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193
Query: 158 WSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGH--KKWITGISWEPVH---LNAPC- 210
WS ++++ + A ++ WD + L H KK S H +N C
Sbjct: 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253
Query: 211 ----RRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVKWGGDGVIYTG 257
++ D R+W+ S + C G V+C + G
Sbjct: 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY-ALRTGAFD 301
S TI V+ G+ I LKGH V+ + + L +G+ D
Sbjct: 314 S---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
S ++TGH++ + V ++ +G + S S D S +W G+ + GH G ++ I
Sbjct: 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 409 SWSADSRLLLSGSKDSTLKVWDI 431
++ ++GS D ++K+WD+
Sbjct: 81 DVDCFTKYCVTGSADYSIKLWDV 103
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 459
GH P+ Q+ ++ + LL S SKDS+ VW + L GH ++++D +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 460 ASGGKDRVLKLW 471
+G D +KLW
Sbjct: 90 VTGSADYSIKLW 101
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 139 TQTPMFKCTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
++ P+ K H+ + WS GK++++G K G++ +D + + H+K I
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDG 252
+ + + P F+++S+D ++ + DVS L+K +T +T +K +
Sbjct: 222 SDMQFSP-----DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK---EF 273
Query: 253 VIYTGSQDCT-IKVWETTQGKL------------IRELKGHGHWVNSLALS---TEYA 294
+I G Q+ + +GK I ++GH +N++A+S T YA
Sbjct: 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 132/329 (40%), Gaps = 62/329 (18%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAV 243
L+GH++ +T + + N S SKD A +W + + L GHT + V
Sbjct: 28 LTGHERPLTQVKY-----NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR-----------ELKGHGHWVNSLALSTE 292
C TGS D +IK+W+ + G+ + E G++ LA+
Sbjct: 83 DCFT----KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF--LAILDN 136
Query: 293 YALRTGAFD-HTGKQYSSPEEMKKAALERYNKIK-------------GNAPERLVSGSDD 338
G+ + + ++ S+ E+ K + E +KI + +++G D
Sbjct: 137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196
Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
+ ++ + + + + H++ ++ + FSPD + ++S D + L + +T + + +
Sbjct: 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256
Query: 399 RGHVGPVYQISWSADSRLLLSG---SKDSTL--------------KVWDIRTQKLKQDLP 441
+ ++L G +KD T K+++ +++
Sbjct: 257 ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ---- 312
Query: 442 GHADEVFAVDWSPDGEKVASGGKDRVLKL 470
GH + V SP G ASGG+D ++L
Sbjct: 313 GHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 30/237 (12%)
Query: 234 ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALS 290
I L+GH +T VK+ +G ++++ S+D + VW + G+ + L GH W +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 291 TEYALRTGAFDHTGK-----------QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
T+Y + TG+ D++ K + SP +K+ + ++
Sbjct: 86 TKYCV-TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 340 TMFLWE--------PAVSKQPKTRMTGHQQL--VNHVYFSPDGQWVASASFDKSIKLWNG 389
++ E VS++P ++ H+ L +S G+++ + D I ++
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204
Query: 390 TTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT----QKLKQDLP 441
+ ++V H + + +S D ++ S+D+ + D+ T +K + D P
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP 261
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V ++ +G L S S D++ +W + GH + I K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 164 HLVSGSKAGELQCWDPQTGK 183
+ V+GS ++ WD G+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQ 107
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWS--AD 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
+L S S D + +W + Q H+ V +V W+P
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPD--GQWVASASFDKSIKLW- 387
L S S D + +W+ + + + H VN V ++P G + AS D + +
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 388 ---NGTTGKFVAVFRGHVGPVYQISW-------------SADSRLLLSGSKDSTLKVW-- 429
NGTT + H V SW + +SR ++G D+ +K+W
Sbjct: 130 FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 430 --DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 471
D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 102 ATIAGHTEAVLSVAFSPDGR----QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
A A H+ +V SV ++P +AS G +V + N T H V +
Sbjct: 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152
Query: 158 WS-----ADGKH--------LVSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGIS 200
W+ DG+H V+G ++ W D QT L GH W+ ++
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVA 211
Query: 201 WEPVHLNAPCRRFV-SASKDGDARIW 225
W P L R ++ S S+D IW
Sbjct: 212 WSPTVL---LRSYLASVSQDRTCIIW 234
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISW 410
T T H+ +++ G +A+ S D+S+K+++ G +A RGH GPV+Q++W
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAW 65
Query: 411 S--ADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAVDWSPD--GEKVASGGK 464
+ +L S S D + +W + T + + GH V +V W+P G +A G
Sbjct: 66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
Query: 465 DRVLKL 470
D + L
Sbjct: 126 DGAISL 131
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 372 GQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSA-DSRLLLS-GSKDSTLK 427
G +AS S+D+ + +W G + GH V + W+ D L+L+ GS D +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 428 VWDIRTQ---KLKQDLPGHADEVFAVDWSP-----------DGEK------VASGGKDRV 467
+ + ++K+ H AV W+P G+K ASGG D +
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 468 LKLW 471
+KLW
Sbjct: 191 IKLW 194
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 99/266 (37%), Gaps = 51/266 (19%)
Query: 212 RFVSASKDGDARIWDVSLRKCVIC--LSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVW 266
R + S D +I+DV ++ L GH V V W ++ + S D + +W
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 267 ETTQGKLIR--ELKGHGHWVNSLALST-EYAL--RTGAFD-------HTGKQYSSPEEMK 314
G + E GH VNS+ + +Y L G+ D +TG+ +++
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146
Query: 315 KAALERYNKI------------------KGNAPERLVSGSDDFTMFLWEPAVSKQPKT-- 354
A N + K N +R SG D + LW+ Q K
Sbjct: 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ 206
Query: 355 RMTGHQQLVNHVYFSPD----GQWVASASFDKSIKLW-------NGTTGKFVAVFRGHVG 403
++ H V V ++P +AS S D + +W N + K + F
Sbjct: 207 KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND--- 263
Query: 404 PVYQISWSADSRLLLSGSKDSTLKVW 429
V+ +SWS + +L D+ + +W
Sbjct: 264 VVWHVSWSITANILAVSGGDNKVTLW 289
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDL 440
+W+ TG V V P +Y + WS D L+ + +D ++V + R T ++D
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 441 PGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 471
P + +G+ + +G +R + LW
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 356 MTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQ 407
+ GH V + + P + +AS S D ++ +W G V R GH V
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 408 ISWSADSR-LLLSGSKDSTLKVWDIRT----QKLKQDLPGHADEVFAVDWSPDGEKVASG 462
++W ++ +LLS D+ + VWD+ T L D+ H D +++VDWS DG + +
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV--HPDTIYSVDWSRDGALICTS 194
Query: 463 GKDRVLKL 470
+D+ +++
Sbjct: 195 CRDKRVRV 202
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 388 NGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQ-------D 439
G K V + GH PV I+W + ++ SGS+D T+ VW+I L
Sbjct: 67 TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
L GH V V W P + V S G D V+ +W
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------EPV 124
Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
++ E HT K+ + ++ N L+S D + +W+
Sbjct: 125 ITLE--------GHT----------KRVGIVAWHPTAQNV---LLSAGCDNVILVWDVGT 163
Query: 349 SKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVG--P 404
T H + V +S DG + ++ DK +++ G VA R H G P
Sbjct: 164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
Query: 405 VYQISWSADSRLLLSG---SKDSTLKVWDIRTQKLKQDL 440
V+ + + ++ ++L +G + + +WD T+ L++ L
Sbjct: 224 VHAV-FVSEGKILTTGFSRMSERQVALWD--TKHLEEPL 259
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ W+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
+L S S D + +W + Q H+ V +V W+P
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPD--GQWVASASFDKSIKLW- 387
L S S D + +W+ + + + H VN V ++P G + AS D + +
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131
Query: 388 ---NGTTGKFVAVFRGHVGPVYQISW-------------SADSRLLLSGSKDSTLKVW-- 429
NGTT + H V SW + +SR ++G D+ +K+W
Sbjct: 132 FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 430 --DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 471
D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 102 ATIAGHTEAVLSVAFSPDGR----QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
A A H+ +V SV ++P +AS G +V + N T H V +
Sbjct: 95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154
Query: 158 WS-----ADGKH--------LVSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGIS 200
W+ DG+H V+G ++ W D QT + L GH W+ ++
Sbjct: 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVA 213
Query: 201 WEPVHLNAPCRRFV-SASKDGDARIW 225
W P L R ++ S S+D IW
Sbjct: 214 WSPTVL---LRSYLASVSQDRTCIIW 236
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-- 164
H + V +++ DG Q SG D +V++WDL+ + + H + V C+A + GK
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 165 LVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
+S + G + WD + KP+ T ++W P + F + G+
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
+ ++ + H+ +T + + + + S+DCT+ V + ++ R+L H
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
+V +A S T +DH + P E + L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV- 459
H V +S +D +SG KD ++KVWD+ + + + H+ EV V P + +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 460 ASGGKDRVLKLW 471
S G+D + LW
Sbjct: 198 LSCGEDGRILLW 209
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLL 417
H +V + DG S D S+K+W+ + + + H V ++ +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVF--AVDWSPDGEKVASGGKD 465
LS +D + +WD R K + A + +V W P+ + + G +
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDL 440
+W+ TG V V P +Y + WS D L+ + +D ++V + R T ++D
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
Query: 441 PGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 471
P + +G+ + +G +R + LW
Sbjct: 217 PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 356 MTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQ 407
+ GH V + + P + +AS S D ++ +W G V R GH V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 408 ISWSADSR-LLLSGSKDSTLKVWDIRT----QKLKQDLPGHADEVFAVDWSPDGEKVASG 462
++W ++ +LLS D+ + VWD+ T L D+ H D +++VDWS DG + +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV--HPDTIYSVDWSRDGALICTS 194
Query: 463 GKDRVLKL 470
+D+ +++
Sbjct: 195 CRDKRVRV 202
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 388 NGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQ-------D 439
G K V + GH PV I+W + ++ SGS+D T+ VW+I L
Sbjct: 67 TGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 440 LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 471
L GH V V W P + V S G D V+ +W
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW 159
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------EPV 124
Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
++ E HT K+ + ++ N L+S D + +W+
Sbjct: 125 ITLE--------GHT----------KRVGIVAWHPTAQNV---LLSAGXDNVILVWDVGT 163
Query: 349 SKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVG--P 404
T H + V +S DG + ++ DK +++ G VA R H G P
Sbjct: 164 GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223
Query: 405 VYQISWSADSRLLLSG---SKDSTLKVWDIRTQKLKQDL 440
V+ + + ++ ++L +G + + +WD T+ L++ L
Sbjct: 224 VHAV-FVSEGKILTTGFSRMSERQVALWD--TKHLEEPL 259
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVH 175
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G+++A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
H ++++ G+ +A+ S DK+IK++ G T K + GH GPV+++ W+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
+L S S D + +W + Q H+ V +V W+P
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPD--GQWVASASFDKSIKLW- 387
L S S D + +W+ + + + H VN V ++P G + AS D + +
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 388 ---NGTTGKFVAVFRGHVGPVYQISW-------------SADSRLLLSGSKDSTLKVW-- 429
NGTT + H V SW + +SR ++G D+ +K+W
Sbjct: 130 FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 430 --DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 471
D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
+L S S D + +W + Q H+ V +V W+P
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPD--GQWVASASFDKSIKLW- 387
L S S D + +W+ + + + H VN V ++P G + AS D + +
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 388 ---NGTTGKFVAVFRGHVGPVYQISW-------------SADSRLLLSGSKDSTLKVW-- 429
NGTT + H V SW + +SR ++G D+ +K+W
Sbjct: 130 FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 430 --DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 471
D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L++GS + WE S Q PK + H V V +S DG V +AS DK+ K+W+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 390 TTGKFVAVFRGHVGPVYQISW--SADSRLLLSGSKDSTLKVWDIRT 433
++ + + + + H PV I W + + +++GS D TLK WD R+
Sbjct: 116 SSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 368 FSPD---GQWVASASFDKSIKLWN-GTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSK 422
FSP G ++ + S+ ++ W +G+ + + H GPV + WS D + + S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLW 471
D T K+WD+ + + Q + H V + W +P+ V +G D+ LK W
Sbjct: 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 155 CIAWSAD---GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
C+++S G L++GS A +++CW+ Q SG + ++ TG + V +
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQMHTGPVLD-VCWSDDGS 99
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWET 268
+ +AS D A++WD+S + I ++ H V + W + TGS D T+K W+T
Sbjct: 100 KVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 269 TQGKLIRELK 278
+ L+
Sbjct: 159 RSSNPMMVLQ 168
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW--SADGKH 164
HT VL V +S DG ++ + S D T ++WDL++ + + H V I W + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 165 LVSGSKAGELQCWDPQTGKP 184
+++GS L+ WD ++ P
Sbjct: 144 VMTGSWDKTLKFWDTRSSNP 163
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGV 253
I +S+ P L P ++ S D R W+V I HT V V W DG
Sbjct: 42 IGCLSFSPPTL--PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 254 -IYTGSQDCTIKVWETTQGKLIRELKGHG-----HWVNSLALSTEYALRTGAFDHTGK 305
++T S D T K+W+ + + I+ + HW+ + S + TG++D T K
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS---CVMTGSWDKTLK 154
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++ A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGP--XLLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADS- 414
H + ++ G+ A+ S DK+IK++ G T K + GH GPV+++ W+
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSP 454
+L S S D + +W + Q H+ V +V W+P
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPD--GQWVASASFDKSIKL-- 386
L S S D + +W+ + + + H VN V ++P G + AS D + +
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVE 129
Query: 387 --WNGTTGKFVAVFRGHVGPVYQISW-------------SADSRLLLSGSKDSTLKVW-- 429
NGTT + H V SW + +SR ++G D+ +K+W
Sbjct: 130 FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 430 --DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 471
D +T L+ L GH+D V V WSP AS +DR +W
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
++ E+ +A + K+K + E L+S S D + +W P+T + GH+ V
Sbjct: 124 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 182
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
+ G+ V SAS D +I+LW TG + F P
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 222
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 194 LSASLDGTIRLWECGTG 210
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 167 DG---SNPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 210
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 211 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 268
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 269 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 324
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 325 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 357
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417
H + + F P G+ + S+S D +K+W+ G GH V I+ R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 418 LSGSKDSTLKVWDIRT 433
LS S D T+++W+ T
Sbjct: 194 LSASLDGTIRLWECGT 209
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 344 WEPAVSKQPKTRMTGHQQLVNHV------------YFSPDGQWVASASF-----DKSIKL 386
+E S K R+ GH L N + Y + D + F + IK+
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 120
Query: 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446
+ + + HV + ++ + L+S S+D LK+W ++ + L GH
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 447 VFAVDWSPDGEKVASGGKDRVLKLW 471
V + G V S D ++LW
Sbjct: 181 VTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 38/249 (15%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH V +A GR + S S D T+RLW+ T T + +N DG
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN-------PHDG 225
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ ++ + Q + T K + + K++ ++ G
Sbjct: 226 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV-----------------IAGHVSGVI 268
Query: 223 RIWDVSLRKCVICL-SGHTLAVTCVKWGGDGV--IYTGSQDCTIKVWE--TTQGKLIREL 277
+ +V ++ I L S T + + G+ IY G ++ + W+ + + + L
Sbjct: 269 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 328
Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIKGNAPERLVSG 335
G +N++ + + FD + K S PE + A I+ P LVS
Sbjct: 329 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-------IEFETPTFLVSN 381
Query: 336 SDDFTMFLW 344
D+ + F +
Sbjct: 382 DDEVSQFCY 390
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 306 QYSSPEEMKKAALERYNKIKGN-APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
++ E+ +A + K+K + E L+S S D + +W P+T + GH+ V
Sbjct: 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATVT 185
Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
+ G+ V SAS D +I+LW TG + F P
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 197 LSASLDGTIRLWECGTG 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 170 DGS---NPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 213
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 271
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 272 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 327
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 328 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 360
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417
H + + F P G+ + S+S D +K+W+ G GH V I+ R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 418 LSGSKDSTLKVWDIRT 433
LS S D T+++W+ T
Sbjct: 197 LSASLDGTIRLWECGT 212
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 344 WEPAVSKQPKTRMTGHQQLVNHV------------YFSPDGQWVASASF-----DKSIKL 386
+E S K R+ GH L N + Y + D + F + IK+
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 123
Query: 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446
+ + + HV + ++ + L+S S+D LK+W ++ + L GH
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183
Query: 447 VFAVDWSPDGEKVASGGKDRVLKLW 471
V + G V S D ++LW
Sbjct: 184 VTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143
T+ GH V +A GR + S S D T+RLW+ T T +
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
A + H+ +V +V F+ LASG + + +WD+N T++P + +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGK-----PSGNPLSGHKKWITGISWEPVH 205
V+ +AW+ H+ + + + WD + K +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
R + D D I LR L GH + + W + ++ + +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
D T+ +W + + + G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 381 DKSIKLWN--GTTGKFVAVFRGHVGPVYQISW-SADSRLLLSGSKDSTLKVWDIRTQKLK 437
D SI +W+ + +GH + + W D LLLS +D+T+ +W+ + +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 438 QDLPGHADEVFAVDWSPDG 456
P + F ++P+
Sbjct: 299 SQFPARGNWCFKTKFAPEA 317
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 133/353 (37%), Gaps = 55/353 (15%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDGV----IYT 256
N R A + D R W ++ V+ + + H + C+ W +
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
+ + I GKL K GH SL S +A G+ Y K
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA------PSIGRWYQLIATGCKD 239
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
R KI E+L P S++ +T N D Q +
Sbjct: 240 GRIRIFKIT----EKL------------SPLASEES---LTNSNXFDNSADVDXDAQGRS 280
Query: 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429
++ ++ +L + + ++ H G V+ +SW+ +L S D +++W
Sbjct: 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SP 454
GH V+ + + R + + S D +KV+ D +L H + A+DW SP
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 455 D-GEKVASGGKDRVLKLW 471
+ G +AS D+ +KLW
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 133/353 (37%), Gaps = 55/353 (15%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDGV----IYT 256
N R A + D R W ++ V+ + + H + C+ W +
Sbjct: 126 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 185
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
+ + I GKL K GH SL S +A G+ Y K
Sbjct: 186 SALEQAIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA------PSIGRWYQLIATGCKD 237
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
R KI E+L P S++ +T N D Q +
Sbjct: 238 GRIRIFKI----TEKL------------SPLASEES---LTNSNMFDNSADVDMDAQGRS 278
Query: 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429
++ ++ +L + + ++ H G V+ +SW+ +L S D +++W
Sbjct: 279 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SP 454
GH V+ + + R + + S D +KV+ D +L H + A+DW SP
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 455 D-GEKVASGGKDRVLKLW 471
+ G +AS D+ +KLW
Sbjct: 67 EYGRIIASASYDKTVKLW 84
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 133/353 (37%), Gaps = 55/353 (15%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDGV----IYT 256
N R A + D R W ++ V+ + + H + C+ W +
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
+ + I GKL K GH SL S +A G+ Y K
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA------PSIGRWYQLIATGCKD 239
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
R KI E+L P S++ +T N D Q +
Sbjct: 240 GRIRIFKIT----EKL------------SPLASEES---LTNSNMFDNSADVDMDAQGRS 280
Query: 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429
++ ++ +L + + ++ H G V+ +SW+ +L S D +++W
Sbjct: 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SP 454
GH V+ + + R + + S D +KV+ D +L H + A+DW SP
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 455 D-GEKVASGGKDRVLKLW 471
+ G +AS D+ +KLW
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWV------LCIAWSADGKHLVS 167
A S R LA+G + +W+L + P++ GHK + + +V+
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 168 GSKAGELQCWDP-QTGKPSGN--PLSGHKKWITGISWEPVHLNAPCR--RFVSASKD-GD 221
GS+ G ++ WDP Q P N P+ G K W NA + R V A D GD
Sbjct: 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENK---RDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 222 ARIWDV 227
+++D+
Sbjct: 192 IKLFDL 197
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKA 171
A++ + R + +G + ++L+DL ++ T KN V + + LV+ S
Sbjct: 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
G+ +D +T P+ S +K W+ HL F++A G +W
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 356 MTGHQQLVNHV---YFSPDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQISW 410
M H LV + ++ D +A + + ++ + K+V V + H G V I W
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA--VDWSPDGEKVASGGKDRVL 468
+ DS +++ D VW ++ + K L A V W+P+ +K A G RV+
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 469 KL 470
+
Sbjct: 121 SI 122
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKV 459
V P+ +W+ D + + + +++ K Q +L H +V +DW+PD ++
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRI 67
Query: 460 ASGGKDRVLKLW 471
+ G DR +W
Sbjct: 68 VTCGTDRNAYVW 79
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 42/281 (14%)
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ C AW+ D + E+ ++ K + L H +TGI W P
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAP-----DSN 65
Query: 212 RFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVW 266
R V+ D +A +W + R K + + A CV+W + + +GS+ +I +
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125
Query: 267 ETTQG-KLIRELKGHGHWVNSLALSTEY-----ALRTGAFDHTGKQYSSPEEMKKAALER 320
E + + +K + S LS ++ L G+ D + +S+
Sbjct: 126 EQENDWWVCKHIKKP---IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA----------- 171
Query: 321 YNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
Y K P GS F ++E + S V+ V FS +G VA S
Sbjct: 172 YIKEVEERPAPTPWGSKMPFGELMFESSSS----------CGWVHGVCFSANGSRVAWVS 221
Query: 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420
D ++ L + VA P+ +++ +S L+ +G
Sbjct: 222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 262
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKV 459
V P+ +W+ D + + + +++ K Q +L H +V VDW+PD ++
Sbjct: 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 67
Query: 460 ASGGKDRVLKLW 471
+ G DR +W
Sbjct: 68 VTCGTDRNAYVW 79
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 356 MTGHQQLVNHV---YFSPDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQISW 410
M H LV + ++ D +A + + ++ + K+V V + H G V + W
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 60
Query: 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA--VDWSPDGEKVASGGKDRVL 468
+ DS +++ D VW ++ + K L A V W+P+ +K A G RV+
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 469 KL 470
+
Sbjct: 121 SI 122
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+T + Y+S E R KGN R+ + SD ++ VS + +TG
Sbjct: 176 NTNQFYASSME----GTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTG-DN 229
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR-LLLSG 420
+ N + + DG+ +LWN R H V ++ + L +
Sbjct: 230 VGNVILLNMDGK-----------ELWN---------LRMHKKKVTHVALNPCCDWFLATA 269
Query: 421 SKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 270 SVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+T + Y+S E R KGN R+ + SD ++ VS + +TG
Sbjct: 177 NTNQFYASSME----GTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTG-DN 230
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR-LLLSG 420
+ N + + DG+ +LWN R H V ++ + L +
Sbjct: 231 VGNVILLNMDGK-----------ELWN---------LRMHKKKVTHVALNPCCDWFLATA 270
Query: 421 SKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 271 SVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 32/175 (18%)
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+T + Y+S E R KGN R+ + SD ++ VS + +TG
Sbjct: 176 NTNQFYASSME----GTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTG-DN 229
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR-LLLSG 420
+ N + + DG+ +LWN R H V ++ + L +
Sbjct: 230 VGNVILLNMDGK-----------ELWN---------LRMHKKKVTHVALNPCCDWFLATA 269
Query: 421 SKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471
S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 270 SVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFR--- 399
P + + + M + + V FSP G +A A S I L+ G+ +
Sbjct: 229 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 288
Query: 400 ----------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
H V +S++ L S D L+ WD++T++ L H D++
Sbjct: 289 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 270 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 323
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 324 KLRFWDVKTKERITTLNMH 342
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 220 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 279
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 280 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 332
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFR--- 399
P + + + M + + V FSP G +A A S I L+ G+ +
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278
Query: 400 ----------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447
H V +S++ L S D L+ WD++T++ L H D++
Sbjct: 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 260 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 313
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 314 KLRFWDVKTKERITTLNMH 332
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
I ELK H ++S+ + + + H G + EE +E + K+ N +RLV
Sbjct: 140 IMELKYHADLLDSMGIEGKIQI------HVGSSMNGKEESLNRFIENFRKLPSNISKRLV 193
Query: 334 SGSDD 338
+DD
Sbjct: 194 IENDD 198
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 212 RFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKV 265
++ + G +IWD + ++ L+G + + CV V+ TG QD + +
Sbjct: 204 EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 266 WETTQGKL-IRELKGH 280
W+ QG + + LK H
Sbjct: 264 WDVRQGTMPVSLLKAH 279
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 426 LKVWDIRTQ--KLKQDLPGHADEV--FAVDWSPDGEKV-ASGGKDRVLKLW 471
LK+WD R Q + Q L D V VD P+ + V A+GG+D +L +W
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 390 TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL-KVWDIRTQKLKQDLPGHADEVF 448
GK V V + H PV + + ++ + S+D TL +V+ L ++ D
Sbjct: 168 VVGKGVLV-KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTS 226
Query: 449 AVD--WSPDGEKVA 460
+D WSPDG K+A
Sbjct: 227 IIDMRWSPDGSKLA 240
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 359 HQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQISWS-A 412
H+ V H F+P W+ A++S D ++KLW+ K ++A H PV ++
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPT 260
Query: 413 DSRLLLSGSKDSTLKVW 429
DS LL+ + + ++V+
Sbjct: 261 DSTKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 359 HQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQISWS-A 412
H+ V H F+P W+ A++S D ++KLW+ K ++A H PV ++
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPT 261
Query: 413 DSRLLLSGSKDSTLKVW 429
DS LL+ + + ++V+
Sbjct: 262 DSTKLLTTDQRNEIRVY 278
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 273 LIHKVKPHPGQIESAEL-LEWLLRSSPFQDLSREYYSIDKLKKPKQDRY 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,424,348
Number of Sequences: 62578
Number of extensions: 735830
Number of successful extensions: 3779
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 763
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)