Query 011978
Match_columns 473
No_of_seqs 404 out of 2640
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9E-101 2E-105 652.2 40.7 468 5-472 8-479 (480)
2 KOG0313 Microtubule binding pr 100.0 1.7E-55 3.7E-60 375.5 35.2 371 8-473 5-417 (423)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-51 6.2E-56 354.2 24.5 283 105-472 172-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.5E-49 5.5E-54 337.9 26.2 286 143-472 108-437 (480)
5 KOG0286 G-protein beta subunit 100.0 1.6E-47 3.6E-52 316.0 35.5 293 102-472 49-343 (343)
6 KOG0318 WD40 repeat stress pro 100.0 2.5E-43 5.5E-48 313.0 38.3 388 77-472 146-600 (603)
7 KOG0319 WD40-repeat-containing 100.0 2E-44 4.4E-49 332.1 32.3 341 97-472 93-575 (775)
8 KOG0295 WD40 repeat-containing 100.0 9.3E-45 2E-49 308.3 26.9 308 96-472 96-404 (406)
9 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-45 1.3E-49 315.1 20.6 247 99-430 208-458 (459)
10 KOG0319 WD40-repeat-containing 100.0 1.6E-43 3.5E-48 326.2 28.9 371 65-472 91-617 (775)
11 KOG0296 Angio-associated migra 100.0 2.4E-42 5.1E-47 293.8 30.6 328 101-472 57-396 (399)
12 KOG0279 G protein beta subunit 100.0 3.8E-42 8.2E-47 282.6 30.4 284 101-472 8-311 (315)
13 KOG0273 Beta-transducin family 100.0 8.3E-42 1.8E-46 299.5 33.6 320 106-470 176-519 (524)
14 KOG0315 G-protein beta subunit 100.0 1.5E-41 3.3E-46 274.5 30.3 290 121-453 11-309 (311)
15 KOG0291 WD40-repeat-containing 100.0 3.8E-41 8.2E-46 311.1 36.9 340 96-472 133-548 (893)
16 KOG0318 WD40 repeat stress pro 100.0 5.3E-40 1.2E-44 291.9 38.3 371 95-472 134-558 (603)
17 KOG0265 U5 snRNP-specific prot 100.0 1E-40 2.2E-45 276.9 28.6 283 103-470 42-334 (338)
18 KOG0284 Polyadenylation factor 100.0 3.8E-42 8.2E-47 296.5 18.4 280 108-472 96-378 (464)
19 KOG0285 Pleiotropic regulator 100.0 2.1E-40 4.6E-45 281.1 27.2 289 97-472 140-437 (460)
20 KOG0263 Transcription initiati 100.0 4.2E-41 9.1E-46 313.4 22.8 275 102-472 372-647 (707)
21 KOG0279 G protein beta subunit 100.0 5.6E-39 1.2E-43 264.0 26.5 251 98-432 53-313 (315)
22 KOG0266 WD40 repeat-containing 100.0 2.2E-38 4.7E-43 303.4 32.7 288 103-472 153-452 (456)
23 KOG0281 Beta-TrCP (transducin 100.0 1.5E-40 3.3E-45 281.0 14.9 268 107-472 196-475 (499)
24 KOG0315 G-protein beta subunit 100.0 2.5E-38 5.4E-43 255.9 26.7 266 163-472 11-286 (311)
25 cd00200 WD40 WD40 domain, foun 100.0 3.3E-37 7.2E-42 281.1 37.7 286 102-472 3-289 (289)
26 KOG0273 Beta-transducin family 100.0 4.2E-38 9.1E-43 276.3 29.8 288 108-432 235-523 (524)
27 KOG0291 WD40-repeat-containing 100.0 1.2E-36 2.5E-41 281.5 37.4 322 108-473 265-611 (893)
28 KOG0645 WD40 repeat protein [G 100.0 4.6E-37 1E-41 251.7 30.9 283 102-472 8-309 (312)
29 KOG0293 WD40 repeat-containing 100.0 3.9E-38 8.5E-43 272.0 24.2 287 100-472 216-511 (519)
30 KOG0282 mRNA splicing factor [ 100.0 8.2E-39 1.8E-43 281.8 18.2 294 94-472 200-503 (503)
31 KOG0286 G-protein beta subunit 100.0 6.9E-37 1.5E-41 253.2 27.4 246 102-430 91-343 (343)
32 KOG0306 WD40-repeat-containing 100.0 5.1E-36 1.1E-40 277.2 35.2 373 91-473 88-621 (888)
33 PLN00181 protein SPA1-RELATED; 100.0 1.8E-35 3.8E-40 304.4 40.1 303 129-472 457-791 (793)
34 KOG0316 Conserved WD40 repeat- 100.0 2E-36 4.4E-41 242.9 25.3 283 101-472 10-297 (307)
35 KOG0263 Transcription initiati 100.0 1.5E-36 3.2E-41 283.2 23.6 234 101-461 444-702 (707)
36 KOG0276 Vesicle coat complex C 100.0 7.5E-36 1.6E-40 270.6 26.1 283 103-470 8-295 (794)
37 KOG0292 Vesicle coat complex C 100.0 7.4E-36 1.6E-40 280.5 26.9 309 104-468 5-316 (1202)
38 PLN00181 protein SPA1-RELATED; 100.0 4.9E-34 1.1E-38 293.8 39.8 284 104-431 479-792 (793)
39 KOG0295 WD40 repeat-containing 100.0 7.3E-36 1.6E-40 254.2 20.9 265 98-431 140-405 (406)
40 KOG0276 Vesicle coat complex C 100.0 1.3E-33 2.9E-38 256.1 32.0 323 101-471 48-414 (794)
41 KOG0296 Angio-associated migra 100.0 1.5E-33 3.2E-38 240.4 29.0 291 100-432 98-398 (399)
42 KOG0275 Conserved WD40 repeat- 100.0 3.6E-35 7.8E-40 246.4 17.5 284 106-472 211-507 (508)
43 KOG0306 WD40-repeat-containing 100.0 1.1E-32 2.4E-37 255.2 35.1 355 107-472 64-482 (888)
44 KOG0277 Peroxisomal targeting 100.0 1.1E-33 2.4E-38 229.7 23.4 281 112-431 12-308 (311)
45 KOG2106 Uncharacterized conser 100.0 1.2E-31 2.5E-36 237.8 37.3 412 40-472 44-519 (626)
46 KOG0285 Pleiotropic regulator 100.0 1E-33 2.3E-38 240.5 22.2 242 187-472 145-387 (460)
47 KOG0265 U5 snRNP-specific prot 100.0 1.3E-33 2.8E-38 234.8 22.1 247 142-473 39-295 (338)
48 KOG0281 Beta-TrCP (transducin 100.0 4E-35 8.6E-40 248.3 13.2 228 193-472 197-426 (499)
49 KOG0284 Polyadenylation factor 100.0 8.7E-35 1.9E-39 251.1 15.4 246 103-389 133-379 (464)
50 KOG0274 Cdc4 and related F-box 100.0 6.9E-33 1.5E-37 264.3 30.0 285 107-443 207-493 (537)
51 KOG0278 Serine/threonine kinas 100.0 4.9E-34 1.1E-38 231.2 18.1 286 104-436 10-301 (334)
52 KOG0288 WD40 repeat protein Ti 100.0 6.6E-34 1.4E-38 246.1 18.5 288 97-472 164-459 (459)
53 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-31 4.9E-36 223.6 33.1 282 107-472 13-301 (311)
54 KOG0643 Translation initiation 100.0 3.8E-32 8.3E-37 222.4 26.8 283 103-471 5-314 (327)
55 KOG0266 WD40 repeat-containing 100.0 2.4E-32 5.2E-37 261.8 30.0 240 149-472 158-407 (456)
56 KOG0268 Sof1-like rRNA process 100.0 2.1E-33 4.5E-38 239.2 16.8 281 101-473 59-344 (433)
57 KOG0277 Peroxisomal targeting 100.0 3.8E-32 8.2E-37 220.9 21.0 279 154-472 12-307 (311)
58 KOG0316 Conserved WD40 repeat- 100.0 1.2E-31 2.6E-36 215.6 22.8 240 188-472 12-255 (307)
59 KOG0274 Cdc4 and related F-box 100.0 2.3E-31 5E-36 253.9 28.8 272 149-472 207-480 (537)
60 KOG1407 WD40 repeat protein [F 100.0 4.1E-31 8.9E-36 215.7 25.9 276 146-465 16-293 (313)
61 KOG0300 WD40 repeat-containing 100.0 7.9E-32 1.7E-36 225.8 22.0 323 99-472 139-474 (481)
62 KOG0772 Uncharacterized conser 100.0 1E-31 2.2E-36 238.8 23.5 294 99-472 158-485 (641)
63 KOG0305 Anaphase promoting com 100.0 5.1E-31 1.1E-35 242.2 28.7 270 114-472 183-459 (484)
64 KOG0641 WD40 repeat protein [G 100.0 6.2E-30 1.4E-34 204.6 31.0 292 107-472 31-347 (350)
65 KOG0310 Conserved WD40 repeat- 100.0 5.7E-31 1.2E-35 232.8 26.6 276 107-470 25-305 (487)
66 KOG0645 WD40 repeat protein [G 100.0 4.4E-30 9.5E-35 210.9 29.2 242 143-472 7-259 (312)
67 KOG1063 RNA polymerase II elon 100.0 6.7E-31 1.5E-35 241.4 26.8 369 99-472 182-646 (764)
68 KOG0278 Serine/threonine kinas 100.0 4.7E-32 1E-36 219.8 16.7 282 144-472 8-295 (334)
69 KOG0973 Histone transcription 100.0 1.1E-30 2.4E-35 252.4 27.3 288 107-472 12-353 (942)
70 KOG0640 mRNA cleavage stimulat 100.0 1.1E-30 2.4E-35 218.2 23.5 290 100-472 104-424 (430)
71 KOG0301 Phospholipase A2-activ 100.0 2.5E-30 5.3E-35 237.8 27.0 278 143-472 7-286 (745)
72 KOG0282 mRNA splicing factor [ 100.0 2.5E-31 5.5E-36 234.7 19.3 256 92-430 242-503 (503)
73 KOG0313 Microtubule binding pr 100.0 7.9E-30 1.7E-34 218.7 26.9 278 68-431 105-417 (423)
74 cd00200 WD40 WD40 domain, foun 100.0 1.7E-29 3.7E-34 230.2 30.7 243 145-472 4-247 (289)
75 KOG0299 U3 snoRNP-associated p 100.0 5.1E-30 1.1E-34 225.2 25.7 283 102-429 136-453 (479)
76 PTZ00421 coronin; Provisional 100.0 3.8E-29 8.2E-34 238.6 33.8 267 107-455 19-314 (493)
77 KOG0283 WD40 repeat-containing 100.0 2.9E-30 6.3E-35 243.3 25.6 282 148-472 265-574 (712)
78 KOG0283 WD40 repeat-containing 100.0 1.7E-30 3.7E-35 244.8 24.0 252 102-432 260-576 (712)
79 KOG0301 Phospholipase A2-activ 100.0 1.8E-29 3.9E-34 232.2 27.0 279 100-432 6-288 (745)
80 KOG0293 WD40 repeat-containing 100.0 2.6E-30 5.5E-35 223.9 20.0 249 100-433 261-514 (519)
81 KOG0292 Vesicle coat complex C 100.0 3.2E-30 7E-35 242.9 22.0 267 147-472 6-278 (1202)
82 KOG1408 WD40 repeat protein [F 100.0 5.4E-29 1.2E-33 229.5 29.2 323 111-472 327-711 (1080)
83 KOG1036 Mitotic spindle checkp 100.0 1.1E-28 2.4E-33 206.5 27.8 270 107-464 12-294 (323)
84 KOG1539 WD repeat protein [Gen 100.0 1.3E-28 2.8E-33 230.9 31.1 362 98-472 192-646 (910)
85 PTZ00420 coronin; Provisional 100.0 5.1E-28 1.1E-32 231.8 35.3 251 126-456 50-318 (568)
86 KOG1332 Vesicle coat complex C 100.0 7.7E-30 1.7E-34 206.3 18.0 256 105-472 8-284 (299)
87 KOG0305 Anaphase promoting com 100.0 1.1E-28 2.4E-33 226.8 26.5 241 107-434 216-463 (484)
88 KOG0647 mRNA export protein (c 100.0 2.7E-28 5.8E-33 203.4 25.2 270 148-462 25-311 (347)
89 KOG0299 U3 snoRNP-associated p 100.0 2.4E-28 5.2E-33 214.7 25.8 273 144-462 136-443 (479)
90 KOG0647 mRNA export protein (c 100.0 2.6E-28 5.7E-33 203.4 24.4 271 107-420 26-311 (347)
91 KOG0288 WD40 repeat protein Ti 100.0 4.8E-29 1E-33 216.1 19.3 245 100-429 211-458 (459)
92 KOG1407 WD40 repeat protein [F 100.0 1.2E-27 2.6E-32 195.5 26.3 276 102-423 14-293 (313)
93 KOG1539 WD repeat protein [Gen 100.0 1.1E-26 2.3E-31 218.2 35.9 356 111-472 162-604 (910)
94 KOG0289 mRNA splicing factor [ 100.0 1.7E-27 3.8E-32 207.7 27.5 281 109-431 220-505 (506)
95 PTZ00421 coronin; Provisional 100.0 2.5E-27 5.4E-32 226.1 30.6 228 103-413 70-314 (493)
96 KOG0308 Conserved WD40 repeat- 100.0 5.3E-29 1.1E-33 227.5 17.5 236 160-470 35-281 (735)
97 KOG0308 Conserved WD40 repeat- 100.0 1.1E-28 2.3E-33 225.5 19.5 277 113-472 29-325 (735)
98 KOG0289 mRNA splicing factor [ 100.0 7.4E-27 1.6E-31 203.8 27.2 279 151-472 220-504 (506)
99 KOG0264 Nucleosome remodeling 100.0 7.8E-28 1.7E-32 211.5 20.9 243 191-472 122-402 (422)
100 KOG0275 Conserved WD40 repeat- 100.0 3.2E-28 7E-33 204.8 17.1 239 149-472 212-465 (508)
101 KOG2096 WD40 repeat protein [G 100.0 1.2E-26 2.5E-31 195.0 26.2 294 101-470 79-398 (420)
102 KOG0264 Nucleosome remodeling 100.0 1.2E-27 2.5E-32 210.4 20.7 246 106-433 122-405 (422)
103 KOG0310 Conserved WD40 repeat- 100.0 2.6E-27 5.5E-32 209.8 22.8 245 104-433 64-310 (487)
104 KOG4283 Transcription-coupled 100.0 1E-26 2.3E-31 193.2 24.2 298 105-472 40-363 (397)
105 KOG1446 Histone H3 (Lys4) meth 100.0 7E-26 1.5E-30 190.7 28.7 241 146-473 10-261 (311)
106 KOG0650 WD40 repeat nucleolar 100.0 3.8E-27 8.3E-32 213.4 21.8 289 98-429 390-732 (733)
107 KOG0294 WD40 repeat-containing 100.0 2.8E-26 6.1E-31 192.5 24.6 242 103-434 38-283 (362)
108 PTZ00420 coronin; Provisional 100.0 5.4E-26 1.2E-30 217.9 30.0 220 216-472 50-291 (568)
109 KOG0294 WD40 repeat-containing 100.0 4.9E-26 1.1E-30 191.0 25.5 242 142-472 35-279 (362)
110 KOG0639 Transducin-like enhanc 100.0 7.5E-27 1.6E-31 207.3 21.6 280 105-472 416-702 (705)
111 KOG1408 WD40 repeat protein [F 100.0 2.5E-26 5.5E-31 212.1 24.8 289 105-432 366-713 (1080)
112 KOG1063 RNA polymerase II elon 100.0 2.6E-25 5.6E-30 204.9 29.9 365 102-472 261-697 (764)
113 KOG2106 Uncharacterized conser 99.9 4.4E-24 9.6E-29 190.0 35.5 278 103-430 195-519 (626)
114 KOG2445 Nuclear pore complex c 99.9 3.1E-25 6.7E-30 185.7 26.1 262 104-473 9-317 (361)
115 KOG0269 WD40 repeat-containing 99.9 1.1E-26 2.3E-31 216.5 19.3 277 153-469 42-335 (839)
116 KOG0646 WD40 repeat protein [G 99.9 4E-26 8.7E-31 201.2 21.7 229 108-455 81-330 (476)
117 KOG2048 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 198.0 34.4 328 100-472 60-503 (691)
118 KOG0643 Translation initiation 99.9 2E-25 4.3E-30 183.2 23.6 240 145-464 5-251 (327)
119 KOG0772 Uncharacterized conser 99.9 3.4E-26 7.4E-31 203.8 20.6 243 144-464 161-429 (641)
120 KOG0973 Histone transcription 99.9 1.2E-25 2.6E-30 217.8 24.3 268 99-434 60-357 (942)
121 KOG0267 Microtubule severing p 99.9 1.5E-27 3.2E-32 220.6 10.5 254 164-466 6-260 (825)
122 KOG0300 WD40 repeat-containing 99.9 7.4E-26 1.6E-30 190.1 19.2 253 97-434 179-478 (481)
123 KOG2055 WD40 repeat protein [G 99.9 4.5E-25 9.7E-30 194.3 24.9 281 108-472 213-510 (514)
124 KOG0641 WD40 repeat protein [G 99.9 6.9E-24 1.5E-28 170.0 27.9 241 105-432 86-349 (350)
125 KOG1274 WD40 repeat protein [G 99.9 2.7E-24 6E-29 204.4 29.8 283 105-470 10-296 (933)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.5E-23 9.7E-28 189.8 35.8 286 121-454 2-300 (300)
127 KOG0640 mRNA cleavage stimulat 99.9 2.7E-25 5.9E-30 186.1 17.8 254 100-389 164-425 (430)
128 KOG0267 Microtubule severing p 99.9 1.4E-26 3E-31 214.2 10.9 237 103-424 23-260 (825)
129 KOG1445 Tumor-specific antigen 99.9 2.5E-24 5.3E-29 196.6 24.6 112 361-472 628-748 (1012)
130 KOG2048 WD40 repeat protein [G 99.9 4.7E-23 1E-27 189.8 32.9 360 105-471 107-545 (691)
131 KOG4328 WD40 protein [Function 99.9 3.7E-24 8E-29 188.4 22.4 297 136-472 172-493 (498)
132 KOG0646 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 185.7 24.2 270 125-472 12-305 (476)
133 KOG1274 WD40 repeat protein [G 99.9 2E-23 4.4E-28 198.5 25.9 239 148-472 11-260 (933)
134 KOG1273 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 170.2 25.8 279 111-432 26-322 (405)
135 KOG0268 Sof1-like rRNA process 99.9 1.5E-24 3.3E-29 185.4 13.6 238 189-473 62-301 (433)
136 KOG0321 WD40 repeat-containing 99.9 4.3E-23 9.4E-28 188.7 22.0 285 113-472 54-389 (720)
137 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.4E-27 180.8 22.5 285 126-456 8-305 (673)
138 KOG0302 Ribosome Assembly prot 99.9 1.1E-22 2.3E-27 175.0 20.4 241 103-467 146-432 (440)
139 KOG0650 WD40 repeat nucleolar 99.9 3.2E-22 7E-27 181.7 22.5 286 144-472 394-733 (733)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-21 1.2E-25 175.9 31.2 262 163-472 2-277 (300)
141 KOG0321 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 185.3 19.6 277 103-457 95-430 (720)
142 KOG1036 Mitotic spindle checkp 99.9 2E-21 4.4E-26 163.2 24.8 236 106-422 52-294 (323)
143 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-19 2.6E-24 175.4 40.9 326 103-472 60-398 (466)
144 KOG0322 G-protein beta subunit 99.9 8.8E-23 1.9E-27 167.5 15.2 286 103-431 9-322 (323)
145 KOG1034 Transcriptional repres 99.9 8.8E-22 1.9E-26 166.5 21.6 312 103-472 33-381 (385)
146 KOG0269 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 188.8 18.9 282 110-432 41-340 (839)
147 KOG1332 Vesicle coat complex C 99.9 4.1E-22 8.8E-27 161.8 18.3 216 99-390 47-286 (299)
148 KOG4283 Transcription-coupled 99.9 2.1E-21 4.6E-26 161.8 22.9 217 148-435 41-279 (397)
149 KOG4328 WD40 protein [Function 99.9 2.2E-21 4.9E-26 171.0 23.1 288 104-431 182-494 (498)
150 KOG0270 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 169.2 23.4 283 113-436 130-453 (463)
151 KOG0307 Vesicle coat complex C 99.9 2.5E-22 5.5E-27 195.8 15.8 246 110-434 66-329 (1049)
152 KOG0270 WD40 repeat-containing 99.9 6.4E-21 1.4E-25 167.6 22.7 276 156-472 131-447 (463)
153 KOG0307 Vesicle coat complex C 99.9 3.3E-22 7.2E-27 194.9 14.9 278 113-472 11-325 (1049)
154 KOG1538 Uncharacterized conser 99.9 6E-21 1.3E-25 175.6 21.8 276 110-432 14-293 (1081)
155 KOG1445 Tumor-specific antigen 99.9 2.2E-20 4.9E-25 171.0 25.2 139 328-466 639-786 (1012)
156 KOG2096 WD40 repeat protein [G 99.9 3.6E-21 7.8E-26 162.2 18.5 216 145-472 81-306 (420)
157 KOG1009 Chromatin assembly com 99.9 4E-20 8.8E-25 160.8 24.8 308 108-435 13-375 (434)
158 COG2319 FOG: WD40 repeat [Gene 99.9 2.9E-18 6.4E-23 165.7 41.1 327 102-472 102-440 (466)
159 KOG0644 Uncharacterized conser 99.9 2.7E-22 5.9E-27 188.7 11.7 275 101-471 183-465 (1113)
160 KOG0302 Ribosome Assembly prot 99.9 4.4E-21 9.5E-26 165.2 17.8 204 189-472 147-376 (440)
161 KOG2919 Guanine nucleotide-bin 99.9 6.7E-20 1.5E-24 154.9 24.0 278 152-465 51-361 (406)
162 KOG0639 Transducin-like enhanc 99.9 3.6E-21 7.8E-26 171.5 16.3 237 148-472 417-661 (705)
163 KOG1273 WD40 repeat protein [G 99.9 5.7E-20 1.2E-24 154.8 22.3 280 153-472 26-320 (405)
164 KOG4227 WD40 repeat protein [G 99.9 2E-20 4.4E-25 161.9 18.7 320 68-472 20-385 (609)
165 KOG1007 WD repeat protein TSSC 99.9 7.5E-20 1.6E-24 152.3 20.9 253 102-432 57-361 (370)
166 KOG0322 G-protein beta subunit 99.9 1.5E-20 3.3E-25 154.4 15.7 303 141-472 5-321 (323)
167 KOG0642 Cell-cycle nuclear pro 99.9 1E-20 2.2E-25 171.2 15.5 264 103-444 289-573 (577)
168 KOG0649 WD40 repeat protein [G 99.8 2.9E-18 6.4E-23 139.4 25.8 278 110-471 12-313 (325)
169 KOG1007 WD repeat protein TSSC 99.8 6.7E-19 1.4E-23 146.7 21.0 249 188-470 58-357 (370)
170 KOG4378 Nuclear protein COP1 [ 99.8 4.4E-19 9.5E-24 158.1 20.7 260 110-414 36-305 (673)
171 KOG1009 Chromatin assembly com 99.8 2.1E-18 4.6E-23 150.2 22.4 296 150-470 13-368 (434)
172 KOG1034 Transcriptional repres 99.8 3.4E-19 7.5E-24 151.0 17.1 257 106-432 87-383 (385)
173 KOG1524 WD40 repeat-containing 99.8 8.8E-19 1.9E-23 157.6 19.3 266 148-470 12-282 (737)
174 KOG1334 WD40 repeat protein [G 99.8 3.9E-19 8.5E-24 158.2 16.6 291 144-472 136-464 (559)
175 KOG2445 Nuclear pore complex c 99.8 4.4E-18 9.6E-23 143.1 21.5 208 188-472 8-254 (361)
176 KOG2055 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 152.4 20.7 247 106-432 255-512 (514)
177 KOG1517 Guanine nucleotide bin 99.8 1.1E-17 2.3E-22 162.0 25.1 287 106-434 1062-1383(1387)
178 KOG1587 Cytoplasmic dynein int 99.8 1.8E-17 4E-22 157.6 26.1 269 129-472 221-514 (555)
179 KOG0642 Cell-cycle nuclear pro 99.8 2.3E-18 4.9E-23 156.2 17.0 252 145-472 289-559 (577)
180 KOG1188 WD40 repeat protein [G 99.8 6.1E-18 1.3E-22 144.3 18.3 269 121-472 41-344 (376)
181 PRK11028 6-phosphogluconolacto 99.8 2.5E-16 5.5E-21 146.4 30.1 268 124-472 6-302 (330)
182 KOG1538 Uncharacterized conser 99.8 3.1E-17 6.7E-22 151.5 23.0 271 152-472 14-291 (1081)
183 KOG2919 Guanine nucleotide-bin 99.8 2.9E-17 6.3E-22 139.1 21.0 270 112-423 53-361 (406)
184 KOG0771 Prolactin regulatory e 99.8 8.1E-18 1.8E-22 147.6 17.7 201 112-433 148-355 (398)
185 KOG1334 WD40 repeat protein [G 99.8 3.6E-18 7.9E-23 152.1 14.8 293 101-433 135-467 (559)
186 KOG1188 WD40 repeat protein [G 99.8 1E-17 2.2E-22 143.0 16.5 271 90-389 50-345 (376)
187 KOG0290 Conserved WD40 repeat- 99.8 1.8E-16 4E-21 132.4 22.5 277 151-465 45-357 (364)
188 KOG1963 WD40 repeat protein [G 99.8 2.4E-16 5.2E-21 150.5 25.9 273 114-471 22-319 (792)
189 KOG1963 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 148.3 27.7 291 106-472 203-536 (792)
190 KOG0303 Actin-binding protein 99.8 3E-17 6.6E-22 142.5 17.3 164 236-472 77-247 (472)
191 KOG0303 Actin-binding protein 99.8 4.6E-17 1E-21 141.4 18.4 200 188-472 76-292 (472)
192 KOG0290 Conserved WD40 repeat- 99.8 5.8E-16 1.3E-20 129.4 24.2 271 110-422 46-356 (364)
193 KOG1523 Actin-related protein 99.8 1.2E-16 2.6E-21 135.3 20.0 235 150-465 10-269 (361)
194 PRK01742 tolB translocation pr 99.8 1E-16 2.2E-21 153.6 21.2 233 129-455 183-426 (429)
195 KOG2394 WD40 protein DMR-N9 [G 99.8 1E-16 2.2E-21 144.6 19.6 247 153-453 126-383 (636)
196 KOG1517 Guanine nucleotide bin 99.7 5.3E-16 1.2E-20 150.5 23.5 282 152-472 1066-1379(1387)
197 KOG2110 Uncharacterized conser 99.7 1.5E-15 3.3E-20 131.2 23.4 224 208-472 15-246 (391)
198 KOG1310 WD40 repeat protein [G 99.7 3.9E-17 8.5E-22 147.6 13.9 165 101-269 43-231 (758)
199 KOG1524 WD40 repeat-containing 99.7 5E-16 1.1E-20 140.1 20.6 260 107-429 13-283 (737)
200 KOG1240 Protein kinase contain 99.7 2.4E-15 5.3E-20 148.2 25.0 341 95-472 1035-1431(1431)
201 KOG4497 Uncharacterized conser 99.7 4.5E-15 9.7E-20 126.3 22.7 306 156-472 14-389 (447)
202 KOG1523 Actin-related protein 99.7 5.2E-15 1.1E-19 125.5 21.4 155 108-267 10-174 (361)
203 KOG0649 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 118.7 21.4 227 152-471 12-271 (325)
204 KOG0771 Prolactin regulatory e 99.7 8.4E-15 1.8E-19 128.9 21.7 191 244-471 148-351 (398)
205 PRK11028 6-phosphogluconolacto 99.7 1E-13 2.2E-18 129.0 29.7 246 109-432 35-304 (330)
206 KOG1587 Cytoplasmic dynein int 99.7 1.4E-14 2.9E-19 138.2 23.9 246 107-391 241-517 (555)
207 KOG3881 Uncharacterized conser 99.7 1.2E-14 2.6E-19 126.6 20.9 271 150-455 55-342 (412)
208 PRK01742 tolB translocation pr 99.7 7.4E-15 1.6E-19 140.9 21.5 219 101-413 196-426 (429)
209 KOG0644 Uncharacterized conser 99.7 1.3E-16 2.9E-21 150.9 8.9 234 188-472 185-424 (1113)
210 KOG2110 Uncharacterized conser 99.7 1E-13 2.3E-18 120.0 25.8 234 108-433 5-249 (391)
211 KOG1272 WD40-repeat-containing 99.7 4.5E-16 9.8E-21 138.1 10.8 267 150-466 129-401 (545)
212 KOG1310 WD40 repeat protein [G 99.6 3.5E-15 7.5E-20 135.2 14.3 126 144-272 44-181 (758)
213 KOG2111 Uncharacterized conser 99.6 1.2E-12 2.7E-17 111.3 28.0 234 152-433 7-257 (346)
214 PF02239 Cytochrom_D1: Cytochr 99.6 7.9E-13 1.7E-17 122.8 29.6 296 111-441 39-356 (369)
215 PRK03629 tolB translocation pr 99.6 6.6E-13 1.4E-17 127.1 28.7 233 130-454 179-427 (429)
216 PRK02889 tolB translocation pr 99.6 3.8E-13 8.3E-18 128.9 23.7 234 130-455 176-425 (427)
217 PRK04922 tolB translocation pr 99.6 3.8E-13 8.2E-18 129.4 23.7 233 130-454 184-432 (433)
218 KOG4227 WD40 repeat protein [G 99.6 2.8E-13 6E-18 118.1 20.1 246 145-472 51-320 (609)
219 KOG1272 WD40-repeat-containing 99.6 4.6E-15 9.9E-20 131.8 9.1 222 208-472 139-360 (545)
220 KOG2321 WD40 repeat protein [G 99.6 1.2E-12 2.6E-17 119.7 23.8 284 106-471 49-340 (703)
221 PRK05137 tolB translocation pr 99.6 3.8E-12 8.3E-17 122.6 27.3 232 130-454 182-432 (435)
222 KOG4497 Uncharacterized conser 99.6 5.6E-12 1.2E-16 107.7 24.4 329 109-468 49-426 (447)
223 PF08662 eIF2A: Eukaryotic tra 99.5 3.9E-13 8.4E-18 113.4 17.0 108 360-472 59-177 (194)
224 PF02239 Cytochrom_D1: Cytochr 99.5 2.5E-11 5.5E-16 112.8 30.5 306 124-472 10-345 (369)
225 PRK03629 tolB translocation pr 99.5 4.7E-12 1E-16 121.3 26.2 220 102-412 192-427 (429)
226 KOG1354 Serine/threonine prote 99.5 1.3E-12 2.8E-17 112.2 18.6 276 108-472 25-357 (433)
227 KOG0974 WD-repeat protein WDR6 99.5 1.7E-12 3.7E-17 126.7 21.2 186 251-472 99-286 (967)
228 KOG2394 WD40 protein DMR-N9 [G 99.5 6.7E-14 1.4E-18 126.7 9.3 123 108-231 290-455 (636)
229 KOG2111 Uncharacterized conser 99.5 8.6E-12 1.9E-16 106.2 20.8 224 208-472 15-254 (346)
230 KOG3881 Uncharacterized conser 99.5 4.7E-12 1E-16 110.7 19.7 199 241-472 106-318 (412)
231 KOG2315 Predicted translation 99.5 1.1E-10 2.4E-15 106.9 29.2 316 108-472 34-388 (566)
232 KOG2139 WD40 repeat protein [G 99.5 9.7E-11 2.1E-15 101.6 26.8 296 110-431 100-430 (445)
233 KOG2139 WD40 repeat protein [G 99.5 3.8E-12 8.2E-17 110.1 18.1 196 195-463 100-299 (445)
234 TIGR03300 assembly_YfgL outer 99.5 1.5E-10 3.2E-15 109.9 30.8 307 120-472 65-377 (377)
235 PRK04922 tolB translocation pr 99.5 2.4E-11 5.2E-16 116.9 24.8 164 100-272 195-371 (433)
236 PRK02889 tolB translocation pr 99.5 1.3E-11 2.9E-16 118.3 22.4 207 220-466 176-392 (427)
237 PRK05137 tolB translocation pr 99.4 6.3E-11 1.4E-15 114.2 24.7 204 220-465 182-397 (435)
238 KOG1240 Protein kinase contain 99.4 5.1E-11 1.1E-15 118.4 23.7 253 142-435 1040-1337(1431)
239 KOG4547 WD40 repeat-containing 99.4 9.2E-11 2E-15 108.2 22.1 208 117-433 2-221 (541)
240 TIGR02800 propeller_TolB tol-p 99.4 2.8E-10 6E-15 109.8 26.1 231 130-452 170-416 (417)
241 COG5354 Uncharacterized protei 99.4 6.8E-10 1.5E-14 100.7 26.1 304 109-466 72-421 (561)
242 KOG2321 WD40 repeat protein [G 99.4 4.3E-11 9.4E-16 109.7 18.7 235 148-472 49-300 (703)
243 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-10 2.3E-15 98.6 20.1 153 112-276 9-185 (194)
244 KOG0974 WD-repeat protein WDR6 99.4 4.6E-11 9.9E-16 117.0 19.9 267 110-433 9-289 (967)
245 PRK00178 tolB translocation pr 99.4 5E-10 1.1E-14 108.2 27.4 233 131-455 180-428 (430)
246 KOG4547 WD40 repeat-containing 99.4 4.7E-11 1E-15 110.1 18.1 202 253-472 7-218 (541)
247 PRK04792 tolB translocation pr 99.4 6.3E-10 1.4E-14 107.2 26.1 233 131-454 199-446 (448)
248 KOG2315 Predicted translation 99.4 1E-09 2.3E-14 100.7 25.4 297 110-455 75-411 (566)
249 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.2E-15 99.8 18.7 247 100-391 16-271 (404)
250 KOG0309 Conserved WD40 repeat- 99.3 1.4E-11 3.1E-16 116.0 13.6 285 108-433 24-340 (1081)
251 KOG0280 Uncharacterized conser 99.3 3.4E-10 7.4E-15 95.6 20.4 223 213-472 88-331 (339)
252 KOG1064 RAVE (regulator of V-A 99.3 3.5E-11 7.6E-16 123.6 13.5 228 147-467 2205-2439(2439)
253 KOG2314 Translation initiation 99.3 6.1E-09 1.3E-13 95.5 26.3 316 112-466 214-559 (698)
254 PRK01029 tolB translocation pr 99.3 2.8E-09 6.1E-14 101.8 25.5 241 130-456 165-426 (428)
255 TIGR03300 assembly_YfgL outer 99.3 6E-09 1.3E-13 98.9 27.4 260 119-429 104-376 (377)
256 PRK00178 tolB translocation pr 99.3 3.8E-09 8.1E-14 102.1 26.0 162 101-271 191-365 (430)
257 TIGR02800 propeller_TolB tol-p 99.3 2.2E-09 4.7E-14 103.6 24.3 205 220-466 170-386 (417)
258 KOG4190 Uncharacterized conser 99.3 3.4E-11 7.4E-16 109.9 10.3 215 103-437 730-953 (1034)
259 PF08154 NLE: NLE (NUC135) dom 99.2 3.3E-11 7.2E-16 80.4 7.5 62 10-71 1-65 (65)
260 COG5354 Uncharacterized protei 99.2 1.7E-08 3.6E-13 91.9 26.8 323 107-472 31-393 (561)
261 KOG2041 WD40 repeat protein [G 99.2 6.8E-09 1.5E-13 98.0 25.0 295 109-433 15-338 (1189)
262 KOG1064 RAVE (regulator of V-A 99.2 7.6E-11 1.7E-15 121.2 12.8 162 104-276 2204-2373(2439)
263 PRK04792 tolB translocation pr 99.2 5.8E-09 1.3E-13 100.5 25.1 140 103-252 212-361 (448)
264 COG5170 CDC55 Serine/threonine 99.2 1.2E-09 2.5E-14 93.1 16.0 285 107-471 25-364 (460)
265 PRK01029 tolB translocation pr 99.2 1.9E-08 4.1E-13 96.2 26.5 225 103-414 179-426 (428)
266 KOG0280 Uncharacterized conser 99.2 7.3E-09 1.6E-13 87.7 19.8 259 129-430 45-331 (339)
267 PF04762 IKI3: IKI3 family; I 99.2 7.8E-08 1.7E-12 99.5 31.7 312 107-472 74-454 (928)
268 TIGR02658 TTQ_MADH_Hv methylam 99.2 5.2E-07 1.1E-11 82.3 32.1 269 130-440 27-338 (352)
269 COG4946 Uncharacterized protei 99.2 1.8E-07 3.8E-12 84.7 28.3 109 357-466 356-465 (668)
270 KOG0309 Conserved WD40 repeat- 99.1 4.6E-10 1E-14 106.0 12.6 283 150-472 24-337 (1081)
271 PF10282 Lactonase: Lactonase, 99.1 5.4E-07 1.2E-11 84.1 33.2 229 209-472 47-320 (345)
272 PF10282 Lactonase: Lactonase, 99.1 8.4E-07 1.8E-11 82.8 34.0 251 111-437 39-329 (345)
273 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.7E-12 99.9 30.7 262 113-436 572-892 (1057)
274 KOG4532 WD40-like repeat conta 99.1 1.7E-08 3.6E-13 84.5 18.9 233 197-465 71-323 (344)
275 KOG1409 Uncharacterized conser 99.1 4.3E-09 9.3E-14 91.0 15.6 242 144-472 18-268 (404)
276 KOG1354 Serine/threonine prote 99.1 1E-08 2.2E-13 88.7 16.8 281 109-472 85-432 (433)
277 PRK11138 outer membrane biogen 99.0 5.7E-07 1.2E-11 85.8 28.7 305 120-472 69-392 (394)
278 COG4946 Uncharacterized protei 99.0 2E-07 4.4E-12 84.3 22.9 102 361-463 402-507 (668)
279 PF04762 IKI3: IKI3 family; I 99.0 5.1E-06 1.1E-10 86.4 35.9 350 107-469 119-559 (928)
280 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.6E-06 7.7E-11 76.9 30.8 252 172-472 27-328 (352)
281 KOG1912 WD40 repeat protein [G 99.0 1.3E-06 2.8E-11 83.9 27.1 350 100-472 47-549 (1062)
282 KOG3914 WD repeat protein WDR4 98.9 1.8E-08 4E-13 89.1 13.3 161 111-278 65-232 (390)
283 COG2706 3-carboxymuconate cycl 98.9 4.4E-06 9.4E-11 73.6 27.6 257 104-471 35-318 (346)
284 PF00400 WD40: WD domain, G-be 98.9 3.5E-09 7.7E-14 63.7 6.3 39 392-430 1-39 (39)
285 KOG4190 Uncharacterized conser 98.9 3E-09 6.5E-14 97.5 7.9 200 233-472 728-946 (1034)
286 KOG2314 Translation initiation 98.9 7.3E-07 1.6E-11 82.3 22.5 280 109-433 250-574 (698)
287 PLN02919 haloacid dehalogenase 98.9 1.7E-06 3.6E-11 91.6 28.5 143 330-472 696-886 (1057)
288 KOG2041 WD40 repeat protein [G 98.9 1.9E-07 4.2E-12 88.5 19.1 266 151-462 15-326 (1189)
289 PRK04043 tolB translocation pr 98.9 2.1E-06 4.5E-11 81.8 26.0 72 110-182 189-267 (419)
290 PRK11138 outer membrane biogen 98.9 2.1E-06 4.6E-11 81.9 26.3 263 119-431 119-393 (394)
291 PF15492 Nbas_N: Neuroblastoma 98.9 6E-06 1.3E-10 70.5 25.4 144 114-258 3-166 (282)
292 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.5E-13 61.4 5.2 37 100-136 3-39 (39)
293 PRK04043 tolB translocation pr 98.8 5.6E-06 1.2E-10 78.9 25.5 181 242-465 189-388 (419)
294 PF13360 PQQ_2: PQQ-like domai 98.8 8.5E-06 1.9E-10 72.0 24.6 224 129-437 2-235 (238)
295 KOG4532 WD40-like repeat conta 98.7 5.5E-06 1.2E-10 69.8 20.5 233 162-433 84-332 (344)
296 KOG3914 WD repeat protein WDR4 98.7 3E-07 6.5E-12 81.5 13.8 103 335-440 128-231 (390)
297 PF08450 SGL: SMP-30/Gluconola 98.7 0.00011 2.4E-09 65.1 29.6 216 211-462 13-243 (246)
298 PF08450 SGL: SMP-30/Gluconola 98.7 0.00011 2.3E-09 65.3 28.8 217 155-419 4-242 (246)
299 PF07433 DUF1513: Protein of u 98.7 6.7E-05 1.5E-09 66.3 26.5 236 113-422 9-276 (305)
300 PF13360 PQQ_2: PQQ-like domai 98.7 2.5E-05 5.5E-10 68.9 24.2 212 219-472 2-228 (238)
301 KOG4714 Nucleoporin [Nuclear s 98.6 1.2E-06 2.7E-11 73.2 14.0 146 160-347 99-254 (319)
302 KOG4714 Nucleoporin [Nuclear s 98.6 3.7E-07 8E-12 76.3 9.0 145 329-473 101-253 (319)
303 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.7E-12 81.4 7.0 150 124-279 228-386 (425)
304 KOG0882 Cyclophilin-related pe 98.5 1.7E-06 3.7E-11 77.9 12.9 260 107-438 8-311 (558)
305 KOG1912 WD40 repeat protein [G 98.5 2.4E-05 5.1E-10 75.6 21.0 242 153-432 18-304 (1062)
306 COG5170 CDC55 Serine/threonine 98.5 1.9E-06 4.2E-11 73.9 12.3 114 357-472 169-307 (460)
307 KOG2695 WD40 repeat protein [G 98.5 2E-07 4.4E-12 80.9 6.5 128 107-238 251-386 (425)
308 KOG1920 IkappaB kinase complex 98.5 9.2E-05 2E-09 75.3 25.3 68 109-177 69-136 (1265)
309 PF15492 Nbas_N: Neuroblastoma 98.4 0.0008 1.7E-08 57.9 25.8 41 401-441 228-268 (282)
310 KOG0882 Cyclophilin-related pe 98.4 1.7E-06 3.7E-11 77.9 10.1 209 192-439 8-238 (558)
311 KOG1645 RING-finger-containing 98.4 2.4E-05 5.2E-10 69.8 17.0 81 102-183 187-269 (463)
312 cd00216 PQQ_DH Dehydrogenases 98.4 0.00093 2E-08 65.5 29.4 289 120-441 61-433 (488)
313 KOG1832 HIV-1 Vpr-binding prot 98.4 4.3E-07 9.3E-12 88.3 5.2 161 100-273 1093-1259(1516)
314 COG2706 3-carboxymuconate cycl 98.3 0.00061 1.3E-08 60.4 22.9 209 219-464 15-263 (346)
315 KOG1275 PAB-dependent poly(A) 98.3 2E-05 4.2E-10 77.5 14.9 189 210-472 147-340 (1118)
316 KOG1920 IkappaB kinase complex 98.3 0.00028 6E-09 72.0 22.5 108 364-472 199-320 (1265)
317 PF11768 DUF3312: Protein of u 98.3 4.3E-05 9.3E-10 72.0 15.7 75 106-182 257-331 (545)
318 KOG1275 PAB-dependent poly(A) 98.2 4.2E-05 9E-10 75.3 14.6 182 162-388 147-340 (1118)
319 PF07433 DUF1513: Protein of u 98.2 0.0043 9.4E-08 55.1 27.4 246 153-466 7-278 (305)
320 KOG1645 RING-finger-containing 98.2 0.00028 6.1E-09 63.2 17.4 93 174-272 175-269 (463)
321 KOG2066 Vacuolar assembly/sort 98.1 0.00014 3.1E-09 70.7 16.1 142 117-269 80-233 (846)
322 KOG2066 Vacuolar assembly/sort 98.1 0.00031 6.6E-09 68.5 18.0 156 109-279 40-197 (846)
323 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.011 2.4E-07 55.4 28.5 67 117-185 1-76 (353)
324 PF11768 DUF3312: Protein of u 98.0 4.6E-05 1E-09 71.8 10.9 73 359-433 258-330 (545)
325 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.021 4.5E-07 56.4 32.8 112 120-236 69-197 (527)
326 KOG2114 Vacuolar assembly/sort 98.0 0.0015 3.2E-08 64.5 20.2 200 209-446 34-258 (933)
327 PF08596 Lgl_C: Lethal giant l 98.0 0.0025 5.4E-08 60.0 21.3 270 152-464 3-326 (395)
328 KOG1832 HIV-1 Vpr-binding prot 97.9 9.7E-06 2.1E-10 79.3 4.9 187 233-464 1094-1286(1516)
329 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0094 2E-07 50.7 26.9 135 121-263 24-159 (354)
330 cd00216 PQQ_DH Dehydrogenases 97.9 0.0076 1.6E-07 59.2 24.9 116 162-279 61-193 (488)
331 KOG3621 WD40 repeat-containing 97.9 7.9E-05 1.7E-09 71.5 9.4 109 362-470 35-150 (726)
332 KOG3617 WD40 and TPR repeat-co 97.8 0.00039 8.4E-09 68.2 13.6 70 111-180 62-131 (1416)
333 PF08553 VID27: VID27 cytoplas 97.8 0.00056 1.2E-08 68.9 15.2 143 256-431 499-646 (794)
334 PF08596 Lgl_C: Lethal giant l 97.8 0.021 4.5E-07 53.9 24.7 98 332-431 228-334 (395)
335 smart00320 WD40 WD40 repeats. 97.8 6.2E-05 1.3E-09 44.2 5.4 39 392-430 2-40 (40)
336 KOG4640 Anaphase-promoting com 97.8 0.00015 3.2E-09 68.8 9.8 94 109-203 21-115 (665)
337 PF06433 Me-amine-dh_H: Methyl 97.8 0.026 5.7E-07 50.9 25.2 273 130-442 17-330 (342)
338 KOG2114 Vacuolar assembly/sort 97.8 0.0029 6.2E-08 62.6 18.4 126 340-465 93-235 (933)
339 PF04053 Coatomer_WDAD: Coatom 97.7 0.0096 2.1E-07 56.9 20.5 218 149-471 31-259 (443)
340 PF14583 Pectate_lyase22: Olig 97.7 0.044 9.5E-07 50.5 30.7 108 363-472 240-379 (386)
341 KOG1008 Uncharacterized conser 97.7 2.4E-05 5.3E-10 74.0 2.5 198 150-432 56-275 (783)
342 KOG4640 Anaphase-promoting com 97.6 0.0004 8.7E-09 66.0 9.5 92 362-454 22-115 (665)
343 KOG3617 WD40 and TPR repeat-co 97.6 0.00014 3E-09 71.2 6.3 106 365-472 20-129 (1416)
344 PRK02888 nitrous-oxide reducta 97.6 0.07 1.5E-06 52.4 24.2 101 368-472 284-402 (635)
345 smart00320 WD40 WD40 repeats. 97.5 0.00033 7.2E-09 40.9 5.7 37 142-178 4-40 (40)
346 PRK02888 nitrous-oxide reducta 97.5 0.019 4E-07 56.2 19.9 143 115-272 199-354 (635)
347 KOG3621 WD40 repeat-containing 97.5 0.00064 1.4E-08 65.5 9.2 132 329-461 45-186 (726)
348 COG0823 TolB Periplasmic compo 97.4 0.011 2.3E-07 56.4 17.0 128 331-462 252-387 (425)
349 PF08553 VID27: VID27 cytoplas 97.4 0.0058 1.3E-07 61.8 15.1 94 374-468 544-642 (794)
350 PF04841 Vps16_N: Vps16, N-ter 97.3 0.16 3.4E-06 48.7 23.4 66 368-437 186-251 (410)
351 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.16 3.5E-06 47.9 23.0 82 356-437 303-403 (415)
352 KOG2395 Protein involved in va 97.2 0.005 1.1E-07 57.7 11.9 146 254-431 349-499 (644)
353 PF04053 Coatomer_WDAD: Coatom 97.2 0.23 5.1E-06 47.7 23.8 139 110-268 34-172 (443)
354 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.041 9E-07 40.7 13.5 100 363-469 2-109 (111)
355 KOG1008 Uncharacterized conser 97.1 0.00013 2.9E-09 69.1 0.5 161 102-269 96-275 (783)
356 KOG2079 Vacuolar assembly/sort 97.1 0.0015 3.3E-08 66.0 7.6 97 371-467 98-198 (1206)
357 COG0823 TolB Periplasmic compo 97.1 0.0053 1.2E-07 58.4 10.8 120 339-464 218-345 (425)
358 KOG2444 WD40 repeat protein [G 97.1 0.0019 4.1E-08 53.9 6.5 102 371-472 69-175 (238)
359 PF04841 Vps16_N: Vps16, N-ter 97.0 0.32 6.9E-06 46.6 27.0 68 361-430 217-285 (410)
360 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.03 6.6E-07 41.4 12.0 99 153-264 2-109 (111)
361 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.19 4.1E-06 43.1 23.4 67 115-181 100-166 (354)
362 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.0024 5.2E-08 59.9 7.5 95 369-465 1-121 (353)
363 PF06977 SdiA-regulated: SdiA- 96.9 0.26 5.6E-06 43.2 23.3 197 235-471 16-247 (248)
364 PRK13616 lipoprotein LpqB; Pro 96.8 0.013 2.7E-07 58.5 11.2 103 361-470 350-472 (591)
365 PF00780 CNH: CNH domain; Int 96.8 0.4 8.7E-06 43.2 26.9 146 118-273 5-169 (275)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.69 1.5E-05 45.9 27.0 117 162-278 69-198 (527)
367 PF03178 CPSF_A: CPSF A subuni 96.7 0.47 1E-05 43.9 22.3 131 338-470 106-261 (321)
368 KOG2444 WD40 repeat protein [G 96.6 0.01 2.2E-07 49.6 7.5 105 329-433 70-178 (238)
369 PRK13616 lipoprotein LpqB; Pro 96.5 0.11 2.4E-06 51.9 15.7 148 107-267 348-523 (591)
370 KOG2079 Vacuolar assembly/sort 96.4 0.012 2.6E-07 59.9 7.9 97 332-430 102-201 (1206)
371 PF02897 Peptidase_S9_N: Proly 96.3 1.1 2.4E-05 43.2 28.3 61 109-170 124-189 (414)
372 PF02897 Peptidase_S9_N: Proly 96.3 0.11 2.3E-06 50.2 13.8 99 363-463 126-245 (414)
373 PF12894 Apc4_WD40: Anaphase-p 96.3 0.018 4E-07 35.4 5.5 31 402-432 11-41 (47)
374 PF12894 Apc4_WD40: Anaphase-p 96.2 0.021 4.5E-07 35.2 5.6 31 108-138 11-41 (47)
375 COG3386 Gluconolactonase [Carb 96.2 0.92 2E-05 41.3 22.1 105 357-462 159-273 (307)
376 PF03178 CPSF_A: CPSF A subuni 96.1 1.2 2.5E-05 41.3 23.2 170 220-429 62-262 (321)
377 KOG2395 Protein involved in va 96.1 0.082 1.8E-06 49.9 11.1 141 125-268 351-499 (644)
378 PF14870 PSII_BNR: Photosynthe 96.1 0.86 1.9E-05 41.3 17.4 108 358-466 142-254 (302)
379 PF06433 Me-amine-dh_H: Methyl 95.8 1.5 3.1E-05 40.1 26.0 246 114-400 41-330 (342)
380 PF10647 Gmad1: Lipoprotein Lp 95.7 0.52 1.1E-05 41.8 14.4 99 362-463 25-130 (253)
381 COG3386 Gluconolactonase [Carb 95.6 1.8 3.9E-05 39.4 23.5 61 360-421 212-274 (307)
382 KOG4441 Proteins containing BT 95.6 2.9 6.2E-05 42.0 20.3 93 371-467 427-534 (571)
383 COG3391 Uncharacterized conser 95.3 2.7 5.8E-05 39.9 24.7 130 331-464 88-226 (381)
384 PF10647 Gmad1: Lipoprotein Lp 95.2 2.1 4.5E-05 38.0 17.1 105 362-466 67-187 (253)
385 PHA02713 hypothetical protein; 95.1 4 8.7E-05 41.0 19.7 32 371-402 512-545 (557)
386 COG3490 Uncharacterized protei 94.9 2.5 5.5E-05 37.2 18.9 91 113-203 72-171 (366)
387 PF00780 CNH: CNH domain; Int 94.7 3 6.6E-05 37.5 23.8 62 161-231 6-67 (275)
388 COG3490 Uncharacterized protei 94.7 0.53 1.2E-05 41.1 10.6 96 367-462 120-243 (366)
389 TIGR02604 Piru_Ver_Nterm putat 94.5 1.7 3.8E-05 41.0 15.0 99 363-464 74-203 (367)
390 TIGR03074 PQQ_membr_DH membran 94.5 7.1 0.00015 40.6 22.2 116 162-278 194-353 (764)
391 PF06977 SdiA-regulated: SdiA- 94.4 3.3 7.2E-05 36.4 23.4 162 104-273 17-204 (248)
392 PF12234 Rav1p_C: RAVE protein 94.3 1.4 3E-05 44.0 14.0 104 366-471 35-153 (631)
393 PF10168 Nup88: Nuclear pore c 94.2 0.87 1.9E-05 46.7 12.8 71 362-433 86-180 (717)
394 KOG1916 Nuclear protein, conta 94.1 0.07 1.5E-06 53.6 4.7 80 364-444 184-282 (1283)
395 COG3391 Uncharacterized conser 93.9 6.1 0.00013 37.6 30.7 192 212-440 88-291 (381)
396 KOG4460 Nuclear pore complex, 93.8 1.3 2.9E-05 42.2 11.9 75 362-436 105-202 (741)
397 PHA02713 hypothetical protein; 93.7 8.4 0.00018 38.7 19.6 94 371-466 398-523 (557)
398 COG5167 VID27 Protein involved 93.6 1.7 3.6E-05 41.4 12.2 146 254-432 483-632 (776)
399 PF10313 DUF2415: Uncharacteri 93.2 0.44 9.6E-06 28.5 5.2 31 403-433 1-34 (43)
400 PF07569 Hira: TUP1-like enhan 93.0 0.72 1.6E-05 39.7 8.7 65 368-433 18-96 (219)
401 PF10313 DUF2415: Uncharacteri 93.0 0.42 9.2E-06 28.5 4.9 30 362-391 2-34 (43)
402 KOG2377 Uncharacterized conser 92.9 3.5 7.6E-05 38.8 13.0 102 357-460 63-169 (657)
403 KOG2247 WD40 repeat-containing 92.4 0.018 3.9E-07 53.7 -2.0 144 112-264 38-183 (615)
404 PF07995 GSDH: Glucose / Sorbo 92.2 2.7 5.8E-05 39.1 12.0 103 362-466 3-135 (331)
405 PF07995 GSDH: Glucose / Sorbo 91.7 11 0.00024 35.0 26.5 72 397-469 248-330 (331)
406 PF07569 Hira: TUP1-like enhan 91.5 1.6 3.4E-05 37.7 8.9 65 116-181 18-96 (219)
407 KOG1916 Nuclear protein, conta 91.5 0.072 1.6E-06 53.5 0.8 69 111-180 186-265 (1283)
408 PF10168 Nup88: Nuclear pore c 91.2 4.1 8.8E-05 42.0 12.8 68 404-472 86-177 (717)
409 COG5167 VID27 Protein involved 91.2 1.6 3.5E-05 41.5 9.0 53 414-466 573-625 (776)
410 KOG2377 Uncharacterized conser 90.9 9 0.00019 36.2 13.3 151 113-271 27-187 (657)
411 TIGR02604 Piru_Ver_Nterm putat 90.7 3.2 6.9E-05 39.2 11.0 100 362-463 15-142 (367)
412 COG3204 Uncharacterized protei 90.4 7.6 0.00017 34.5 11.8 112 360-471 85-207 (316)
413 PF15390 DUF4613: Domain of un 90.4 10 0.00023 37.1 13.6 117 355-472 51-184 (671)
414 PRK13684 Ycf48-like protein; P 89.8 17 0.00037 33.8 18.0 150 108-267 172-329 (334)
415 PF08728 CRT10: CRT10; InterP 89.7 3.8 8.2E-05 41.6 10.7 102 329-431 114-245 (717)
416 PRK10115 protease 2; Provision 89.4 29 0.00064 36.0 31.7 72 109-182 127-209 (686)
417 TIGR03606 non_repeat_PQQ dehyd 89.3 19 0.00041 34.9 14.8 103 361-465 30-166 (454)
418 PF12234 Rav1p_C: RAVE protein 89.0 3.7 8.1E-05 41.1 10.1 68 404-472 31-102 (631)
419 PHA03098 kelch-like protein; P 89.0 27 0.00058 35.1 17.6 93 371-465 389-497 (534)
420 TIGR03074 PQQ_membr_DH membran 88.9 33 0.00071 35.9 23.7 113 120-237 194-353 (764)
421 PF05096 Glu_cyclase_2: Glutam 88.8 16 0.00035 32.2 22.2 179 243-463 47-249 (264)
422 PF08728 CRT10: CRT10; InterP 88.5 11 0.00023 38.5 12.9 117 110-227 102-245 (717)
423 PF14583 Pectate_lyase22: Olig 88.3 22 0.00048 33.3 21.2 249 199-465 36-303 (386)
424 KOG1897 Damage-specific DNA bi 87.6 41 0.00088 35.4 34.5 121 152-272 489-618 (1096)
425 KOG1900 Nuclear pore complex, 87.4 22 0.00048 38.5 14.7 34 358-391 240-273 (1311)
426 KOG4659 Uncharacterized conser 87.2 50 0.0011 36.0 20.4 26 443-468 660-685 (1899)
427 PF07676 PD40: WD40-like Beta 87.1 1.8 3.9E-05 25.2 4.4 28 444-471 8-38 (39)
428 PF05694 SBP56: 56kDa selenium 86.6 8.9 0.00019 36.4 10.4 102 332-433 215-343 (461)
429 KOG3630 Nuclear pore complex, 86.5 1.7 3.6E-05 45.6 6.2 108 363-471 103-225 (1405)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 86.4 6.3 0.00014 37.6 9.6 82 103-184 302-402 (415)
431 PF07676 PD40: WD40-like Beta 86.0 4 8.7E-05 23.7 5.4 29 149-177 7-38 (39)
432 KOG3630 Nuclear pore complex, 85.7 4.2 9.2E-05 42.8 8.5 97 363-461 158-260 (1405)
433 KOG4499 Ca2+-binding protein R 85.3 23 0.0005 30.5 19.7 46 366-411 217-262 (310)
434 PF12657 TFIIIC_delta: Transcr 84.9 6.8 0.00015 32.3 8.3 27 446-472 87-119 (173)
435 PF11715 Nup160: Nucleoporin N 84.7 3.9 8.4E-05 41.1 8.0 36 403-438 215-254 (547)
436 TIGR02276 beta_rpt_yvtn 40-res 84.7 3.8 8.2E-05 24.1 5.0 31 412-442 1-32 (42)
437 KOG4499 Ca2+-binding protein R 84.3 26 0.00056 30.2 17.0 92 363-454 160-263 (310)
438 KOG4441 Proteins containing BT 83.5 28 0.0006 35.2 13.2 133 331-468 287-440 (571)
439 TIGR02276 beta_rpt_yvtn 40-res 83.4 6.9 0.00015 22.9 5.9 31 370-400 1-32 (42)
440 PF12768 Rax2: Cortical protei 82.9 15 0.00033 33.0 10.0 71 381-452 15-96 (281)
441 KOG2247 WD40 repeat-containing 82.8 0.12 2.6E-06 48.4 -3.2 131 332-468 49-182 (615)
442 PF11715 Nup160: Nucleoporin N 82.7 8.2 0.00018 38.8 9.4 37 362-398 216-256 (547)
443 PF13449 Phytase-like: Esteras 82.5 24 0.00052 32.7 11.7 97 363-460 87-230 (326)
444 KOG1900 Nuclear pore complex, 82.2 31 0.00067 37.5 13.1 150 255-433 93-273 (1311)
445 PHA03098 kelch-like protein; P 82.1 58 0.0013 32.6 18.5 63 370-434 436-513 (534)
446 PF14727 PHTB1_N: PTHB1 N-term 81.1 54 0.0012 31.5 29.3 147 119-267 36-202 (418)
447 PF14781 BBS2_N: Ciliary BBSom 80.8 25 0.00053 27.4 12.8 116 157-274 5-130 (136)
448 smart00564 PQQ beta-propeller 80.5 4.6 9.9E-05 22.2 4.0 26 251-276 6-31 (33)
449 PF12657 TFIIIC_delta: Transcr 80.3 21 0.00045 29.5 9.4 34 195-228 87-121 (173)
450 PF05694 SBP56: 56kDa selenium 80.0 57 0.0012 31.2 13.8 60 361-420 312-391 (461)
451 KOG4460 Nuclear pore complex, 79.6 21 0.00047 34.5 10.0 27 110-136 105-131 (741)
452 PF14870 PSII_BNR: Photosynthe 79.0 51 0.0011 30.1 27.7 135 332-471 159-301 (302)
453 PLN00033 photosystem II stabil 78.8 62 0.0014 30.9 16.5 109 360-473 280-398 (398)
454 PF15390 DUF4613: Domain of un 78.1 19 0.00041 35.5 9.3 66 114-180 118-186 (671)
455 PRK10115 protease 2; Provision 76.0 1E+02 0.0023 32.0 32.1 71 152-230 128-209 (686)
456 KOG3616 Selective LIM binding 76.0 38 0.00082 34.4 10.9 68 108-178 14-81 (1636)
457 PF01011 PQQ: PQQ enzyme repea 75.8 8 0.00017 22.3 4.1 27 253-279 2-28 (38)
458 PLN00033 photosystem II stabil 75.2 79 0.0017 30.2 19.2 146 111-266 241-396 (398)
459 PF14761 HPS3_N: Hermansky-Pud 74.4 15 0.00033 31.2 6.8 48 121-169 29-78 (215)
460 PHA02790 Kelch-like protein; P 74.2 95 0.0021 30.7 17.4 60 370-434 406-472 (480)
461 PF13449 Phytase-like: Esteras 73.3 74 0.0016 29.5 12.0 102 361-463 20-165 (326)
462 PF14781 BBS2_N: Ciliary BBSom 72.6 44 0.00094 26.1 13.7 108 115-228 5-125 (136)
463 PF01436 NHL: NHL repeat; Int 71.5 13 0.00029 19.7 4.0 25 363-387 4-28 (28)
464 KOG1983 Tomosyn and related SN 71.3 1.1E+02 0.0025 33.3 14.1 29 110-138 37-65 (993)
465 KOG3616 Selective LIM binding 70.8 10 0.00023 38.1 5.8 66 403-471 15-80 (1636)
466 PF14727 PHTB1_N: PTHB1 N-term 70.1 1.1E+02 0.0023 29.5 17.1 141 329-471 37-201 (418)
467 PF14269 Arylsulfotran_2: Aryl 69.4 23 0.00051 32.2 7.6 70 362-431 145-219 (299)
468 PRK13684 Ycf48-like protein; P 69.1 99 0.0021 28.8 29.9 109 360-472 214-329 (334)
469 TIGR02171 Fb_sc_TIGR02171 Fibr 68.2 34 0.00073 35.9 8.9 76 382-458 329-412 (912)
470 COG3823 Glutamine cyclotransfe 67.8 76 0.0017 27.0 14.1 68 119-186 55-125 (262)
471 PF14761 HPS3_N: Hermansky-Pud 67.5 26 0.00056 29.8 6.8 49 373-422 29-79 (215)
472 PF10214 Rrn6: RNA polymerase 67.4 74 0.0016 33.6 11.7 93 362-455 147-257 (765)
473 PF05096 Glu_cyclase_2: Glutam 67.1 92 0.002 27.7 23.1 115 153-275 47-163 (264)
474 PF03088 Str_synth: Strictosid 66.3 46 0.001 23.9 7.7 42 379-421 34-75 (89)
475 COG3823 Glutamine cyclotransfe 66.0 83 0.0018 26.8 12.8 92 370-462 138-247 (262)
476 PF01731 Arylesterase: Arylest 65.0 41 0.0009 23.9 6.5 30 403-432 54-84 (86)
477 PF03088 Str_synth: Strictosid 64.1 44 0.00096 24.0 6.6 52 420-472 33-86 (89)
478 KOG2109 WD40 repeat protein [G 63.3 5.8 0.00013 39.2 2.5 82 386-467 299-391 (788)
479 KOG2280 Vacuolar assembly/sort 61.2 2.1E+02 0.0045 29.6 19.6 51 361-412 217-269 (829)
480 PF07250 Glyoxal_oxid_N: Glyox 58.0 39 0.00084 29.7 6.5 81 385-466 49-139 (243)
481 COG3204 Uncharacterized protei 57.7 1.5E+02 0.0032 26.8 19.6 39 148-186 83-121 (316)
482 PF03022 MRJP: Major royal jel 56.5 1.6E+02 0.0034 26.8 19.2 99 363-462 130-253 (287)
483 PF14269 Arylsulfotran_2: Aryl 56.3 45 0.00098 30.4 6.9 69 404-472 145-218 (299)
484 PF08801 Nucleoporin_N: Nup133 55.8 2E+02 0.0043 27.8 15.7 16 254-269 39-54 (422)
485 TIGR03118 PEPCTERM_chp_1 conse 55.6 1.6E+02 0.0036 26.8 13.5 111 363-473 25-169 (336)
486 COG1520 FOG: WD40-like repeat 54.9 1.9E+02 0.0041 27.3 21.6 218 210-472 68-303 (370)
487 PHA02790 Kelch-like protein; P 54.6 2.3E+02 0.0049 28.1 16.7 90 371-465 362-456 (480)
488 PF12768 Rax2: Cortical protei 53.5 1.7E+02 0.0037 26.4 12.5 94 339-433 16-124 (281)
489 PF12341 DUF3639: Protein of u 50.7 38 0.00083 18.0 3.7 25 446-472 3-27 (27)
490 PF13570 PQQ_3: PQQ-like domai 49.0 31 0.00067 20.0 3.2 21 413-433 20-40 (40)
491 PF10395 Utp8: Utp8 family; I 48.8 3.2E+02 0.0069 28.1 13.4 30 108-137 129-158 (670)
492 PRK13615 lipoprotein LpqB; Pro 48.6 2.5E+02 0.0054 28.3 11.1 96 364-463 337-435 (557)
493 PF07250 Glyoxal_oxid_N: Glyox 48.3 1.9E+02 0.0042 25.4 10.0 65 115-179 73-147 (243)
494 KOG1897 Damage-specific DNA bi 47.1 4E+02 0.0086 28.7 28.3 97 371-470 839-938 (1096)
495 COG4590 ABC-type uncharacteriz 46.9 67 0.0015 30.7 6.4 160 105-272 217-389 (733)
496 KOG2280 Vacuolar assembly/sort 45.2 3.8E+02 0.0081 27.9 14.2 38 402-439 216-253 (829)
497 PF11635 Med16: Mediator compl 44.9 80 0.0017 33.3 7.5 67 361-427 260-345 (753)
498 TIGR03548 mutarot_permut cycli 44.0 2.6E+02 0.0057 25.7 12.1 26 369-394 169-198 (323)
499 TIGR03606 non_repeat_PQQ dehyd 43.1 1.3E+02 0.0029 29.3 8.1 55 402-456 29-90 (454)
500 TIGR03118 PEPCTERM_chp_1 conse 41.9 2.8E+02 0.006 25.4 25.4 78 335-412 218-307 (336)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-101 Score=652.22 Aligned_cols=468 Identities=65% Similarity=1.146 Sum_probs=454.9
Q ss_pred cCCcceEEEEEEC---CCCCcCCCeeeecCCCCHHHHHHHHHHHhcC-CCCcceEEEecCeeecccHHhHHHhcCCCccc
Q 011978 5 TETTNNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHKVSVEK 80 (473)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
..|..+|++.|.. ..+.....++.+|..+.+.||..++|+|+.+ +++.|+.|++.+.++..+|++.++...++.|.
T Consensus 8 ~~~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~v~te~ 87 (480)
T KOG0271|consen 8 PAELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQNVSTED 87 (480)
T ss_pred ccccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcccchhh
Confidence 3456788888865 4567788999999999999999999999998 89999999999999999999999999999999
Q ss_pred EEEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC
Q 011978 81 VLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 160 (473)
++.+.|+|+.+++++|..+|...+.||.++|.|++|+|+|.+||+|++|.++|+||+.+..|++.+++|..+|.|++|+|
T Consensus 88 ~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 88 VLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred eeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc
Q 011978 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (473)
Q Consensus 161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~ 240 (473)
||+.||+|+.||+|++||+++|++....+.+|+++|++++|.|.+..++|+++++++.||+++|||+..+.++..+.||+
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (473)
Q Consensus 241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
.+|+|+.|.++|++++|+.|++|++|+...|++++.+++|.++|+.++.+.++.+++++|++.+....+..+....++.+
T Consensus 248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred cceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred hhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC
Q 011978 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (473)
Q Consensus 321 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~ 400 (473)
++......++++++|++|+++++|++...+++..+|.+|+..|+.+.||||+++||++|.|++|++||.++|+.+..|+|
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|-++|+.++||.|.++|++||.|.++++||+++.++...++||.++|++++|+|||+.+++|+.|+.+++|.
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.7e-55 Score=375.49 Aligned_cols=371 Identities=33% Similarity=0.532 Sum_probs=314.9
Q ss_pred cceEEEEEECC--CCCcCCCeeeecCCCCHHHHHHHHHHHhcCC----CCcceEEEecCeeecccHHhHHHhcCCCcccE
Q 011978 8 TNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVEKV 81 (473)
Q Consensus 8 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (473)
..||++.|.++ ++.++..|+++|++.++.+|++++|+|+..+ .+.||+|++.|+.+|++|.+|+++++++.|.+
T Consensus 5 ~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~ 84 (423)
T KOG0313|consen 5 SGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEI 84 (423)
T ss_pred cceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhhe
Confidence 46999999876 4789999999999999999999999999987 78999999999999999999999999999999
Q ss_pred EEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC
Q 011978 82 LSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 161 (473)
++|+|.. .+.++..... .-|.+.|.++... ++++++|++||.+|+||... +......+|.++|.+++|--.
T Consensus 85 leIEYv~----~~~aP~pl~~--~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~ 155 (423)
T KOG0313|consen 85 LEIEYVE----AITAPKPLQC--FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIK 155 (423)
T ss_pred eEEEEEE----ecCCCCcccc--ccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEec
Confidence 9999963 2223222221 2399999999887 88999999999999999865 456678899999998887532
Q ss_pred ---CCeEEEEecCCeEEEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC------
Q 011978 162 ---GKHLVSGSKAGELQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL------ 229 (473)
Q Consensus 162 ---g~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~------ 229 (473)
...+++++.|.++++|.++.++... ....||...|.++...+ ++.+|++|+.|.+++||+...
T Consensus 156 n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 156 NSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred CCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccccc
Confidence 3369999999999999988765322 22359999999987654 678999999999999999321
Q ss_pred -------------------CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 230 -------------------RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 230 -------------------~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
+..+..+.||..+|.++.|.+.+.++++++|.+|+.||+.+++.+.++..
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~----------- 299 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT----------- 299 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-----------
Confidence 23466788999999999999988999999999999999998876543321
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 370 (473)
...+++++++|
T Consensus 300 ---------------------------------------------------------------------~ksl~~i~~~~ 310 (423)
T KOG0313|consen 300 ---------------------------------------------------------------------NKSLNCISYSP 310 (423)
T ss_pred ---------------------------------------------------------------------CcceeEeeccc
Confidence 13467899999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-eeecccccCC
Q 011978 371 DGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQK-LKQDLPGHAD 445 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~~ 445 (473)
..++||+|+.|..+++||.+++. ....|.+|.+.|.++.|+|.. .+|++||.|+++++||+++.+ .+..+.+|.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 99999999999999999999763 456789999999999999955 579999999999999999877 8899999999
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 446 EVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
+|.+++|+. +..++|||.|++|+++.+
T Consensus 391 Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 391 KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEEEeccC-CceEEeccCcceEEEecc
Confidence 999999985 679999999999999864
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-51 Score=354.22 Aligned_cols=283 Identities=28% Similarity=0.506 Sum_probs=263.9
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEeeCCCC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iwd~~~~ 182 (473)
.|-+.+|..+.|++|++.|||||.+|.++||+..+...+..+.+|...|.++.|+|. +..+++|+.||++++|+..+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467889999999999999999999999999999998888999999999999999996 668999999999999999876
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~ 261 (473)
..+ ..+.+|...|..++|+| ++.+++|++.|.+-++||++++..+....||...|.+++|.+|| ++++|+.|.
T Consensus 252 ~~l-~~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 252 TPL-QDLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cch-hhhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 544 45889999999999988 67899999999999999999999999999999999999999999 567899999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.-+|||+++|+++..+.
T Consensus 326 ~~RvWDlRtgr~im~L~--------------------------------------------------------------- 342 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLA--------------------------------------------------------------- 342 (459)
T ss_pred hhheeecccCcEEEEec---------------------------------------------------------------
Confidence 99999999998775443
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec-CCCEEEEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSG 420 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~ 420 (473)
+|.+.|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|.+-|+.|.|+| .|++|+|+
T Consensus 343 ----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 343 ----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ----------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 4556788899999999999999999999999999999999999999999999999 78999999
Q ss_pred eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.|++++||.-.+..+++.+.||.++|.+++.++|+.+++|++.|+++|+|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-49 Score=337.94 Aligned_cols=286 Identities=33% Similarity=0.585 Sum_probs=255.8
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
...+.+|..+|.|+.|+|+|++|++|+.|.++++||+.+..+. ....+|..+|.+++|+| ++..+++|+.||+|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-~t~KgH~~WVlcvawsP-----Dgk~iASG~~dg~I 181 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-FTCKGHKNWVLCVAWSP-----DGKKIASGSKDGSI 181 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-eeecCCccEEEEEEECC-----CcchhhccccCCeE
Confidence 3456799999999999999999999999999999999886654 35789999999999998 67899999999999
Q ss_pred EEEECCCCeEE-EEecCccccEEEEEecC-----C-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 223 RIWDVSLRKCV-ICLSGHTLAVTCVKWGG-----D-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 223 ~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-----~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
++||..++.++ ..+.||...|++++|.| . ..+++++.||+++|||+..++++..+.+|...|.|+.+--
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG---- 257 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG---- 257 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC----
Confidence 99999988765 57899999999999964 2 3689999999999999999999999999999999997642
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC------
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS------ 369 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s------ 369 (473)
...+++++.|++|++|+... ......+.+|..+|+.++.+
T Consensus 258 ---------------------------------~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 258 ---------------------------------EGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred ---------------------------------CceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhh
Confidence 34689999999999999755 34456788999999998876
Q ss_pred -----CCCc-------------------------EEEEEECCCcEEEEeCCC-CceEEEeeCCccCEEEEEEecCCCEEE
Q 011978 370 -----PDGQ-------------------------WVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 370 -----p~g~-------------------------~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
|.++ .|++|++|.++.+|+... .+++....+|...|+.|.||||++++|
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 3333 499999999999999764 457788899999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++|.|..|++||.++|+.+.+++||-+.|+.++||.|.+.|+|||.|.++++|.
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999996
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-47 Score=316.00 Aligned_cols=293 Identities=29% Similarity=0.479 Sum_probs=265.2
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.+|+||...|.++.|++|+++|+++|.||.+.|||.-+..+...++-...+|..++|+|.|+.+|+|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 57899999999999999999999999999999999988877777777889999999999999999999999999999864
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~ 261 (473)
.+.. +.+ +....+.+|...+.|+.|.+|+.|+|++.|.
T Consensus 129 ~d~~----------------------------------g~~--------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~ 166 (343)
T KOG0286|consen 129 RDAE----------------------------------GNV--------RVSRELAGHTGYLSCCRFLDDNHILTGSGDM 166 (343)
T ss_pred cccc----------------------------------ccc--------eeeeeecCccceeEEEEEcCCCceEecCCCc
Confidence 3211 111 1123467899999999999999999999999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
++.+||+++|+.+..+.+|...|.+++++|. .++.+++|+-|+..
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~-----------------------------------~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPS-----------------------------------DGNTFVSGGCDKSA 211 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCC-----------------------------------CCCeEEecccccce
Confidence 9999999999999999999999999998874 24569999999999
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s 419 (473)
++||.+.+ .....+.+|...|++|+|.|+|.-+++|+.|++.|+||++..+.+..|.. -..+|++|+||..|++|.+
T Consensus 212 klWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 212 KLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 99999866 66788999999999999999999999999999999999999998888863 3468999999999999999
Q ss_pred EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|..|.++.+||.-.++....+.||..+|.+|..+|||..+++||.|.++|||.
T Consensus 291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999995
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-43 Score=312.98 Aligned_cols=388 Identities=23% Similarity=0.414 Sum_probs=305.2
Q ss_pred CcccEEEEEEEeceeEEEe-------------ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee
Q 011978 77 SVEKVLSIVYQPQAVFRIR-------------PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~ 143 (473)
+..+++...+.|.+.+|+- |+-+...++..|+.-|+|++|+|||.++|+++.||+|.+||-.+++.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 4556677788888877763 344556677889999999999999999999999999999999999988
Q ss_pred EEEc---CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC--CcEEEEEeceeccCCCCceEEEeeC
Q 011978 144 FKCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSASK 218 (473)
Q Consensus 144 ~~~~---~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~~~~~s~s~ 218 (473)
..+. +|.+.|.+++|+||++++++++.|.+++|||..+.+.......+.+ +...++-|. ...+++.+-
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItVSl 298 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITVSL 298 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEEEc
Confidence 8776 8999999999999999999999999999999998876554433333 333444454 247999999
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceee
Q 011978 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALR 296 (473)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 296 (473)
+|++.+++......+..+.||...|++++.++++ .|++|+.||.|.-|+..+|..-+.. +.|...|..++.+....+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 9999999999999999999999999999999988 6999999999999999988765544 6788888888877744444
Q ss_pred eccccCCCcccCC-------HH------HHHHHH-----------------Hhh-----------hh---cccCCCCceE
Q 011978 297 TGAFDHTGKQYSS-------PE------EMKKAA-----------------LER-----------YN---KIKGNAPERL 332 (473)
Q Consensus 297 ~~~~~~~~~~~~~-------~~------~~~~~~-----------------~~~-----------~~---~~~~~~~~~l 332 (473)
+..+|..-+.... .. +.+... +.+ +. .........+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 4444433221100 00 000000 000 00 0011223468
Q ss_pred EEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~ 410 (473)
+.|+.|+.+++|.+.... ........|...|++++||||+.|||+|...+.+.+||..+.+... .+.-|++.|++++|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEe
Confidence 899999999999987644 4445677899999999999999999999999999999999887632 33459999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|+..++|+||.|..|.||++... +.+.....|...|+.|.|-.+ ..++|.|.|..||+|.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 999999999999999999999753 334444568888999999854 6899999999999997
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-44 Score=332.13 Aligned_cols=341 Identities=27% Similarity=0.479 Sum_probs=282.4
Q ss_pred cccccccccC-CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eEEEEecCCe
Q 011978 97 VNRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGE 173 (473)
Q Consensus 97 ~~~~~~~~~g-h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~ 173 (473)
..++...... |+.+|..++|+|.|..||+|+.|+.++|||+..+.....+++|.+.|.++.|.|+-. .|++|..|++
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~ 172 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGT 172 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCce
Confidence 3466677777 999999999999999999999999999999999999999999999999999999754 5889999999
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceecc-----------------------------------------CCCCce
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----------------------------------------NAPCRR 212 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----------------------------------------~~~~~~ 212 (473)
+++||++++..-......|...|+++.+.+... +..+.+
T Consensus 173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~ 252 (775)
T KOG0319|consen 173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY 252 (775)
T ss_pred EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence 999999977654445677888888887765311 001246
Q ss_pred EEEeeCCCcEEEEECCCCeEE-----------------------------------------------------------
Q 011978 213 FVSASKDGDARIWDVSLRKCV----------------------------------------------------------- 233 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~----------------------------------------------------------- 233 (473)
+.|+|.+|.+++||.++++++
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence 778888888888876543211
Q ss_pred --------------------------EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----ceeeeeeccCc
Q 011978 234 --------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGH 282 (473)
Q Consensus 234 --------------------------~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~ 282 (473)
..+.||...|.++....+| .|++|+.|.++++|.+.++ -++....+|..
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 0124777888888744455 7889999999999976433 23445577888
Q ss_pred eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC----Ce----e
Q 011978 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PK----T 354 (473)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~----~ 354 (473)
.|.+++.+.. ....++++|.|.++++|++...+. .. .
T Consensus 413 svgava~~~~-----------------------------------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 413 SVGAVAGSKL-----------------------------------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred ccceeeeccc-----------------------------------CccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 8877776432 245799999999999999876321 11 1
Q ss_pred eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
....|...|++++++|+.++|||||.|++.++|+++....+.++.||...|++|.|+|..+.+||+|.|++|+||.+.+.
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 435 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 435 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+++++.||...|..+.|-.+|+.|+|++.||.|++|+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999999999999999999999999999997
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-45 Score=308.27 Aligned_cols=308 Identities=29% Similarity=0.459 Sum_probs=274.9
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 96 ~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
|+.++...+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|.+.|.++.|+..|++|++++.|-.++
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 33456667889999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I 254 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l 254 (473)
+||.++.-.-...+.+|...|.++.|.|. +..+++++.|.+|+.||+.++.|++++.+|...|..++.+.||. +
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~-----gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPL-----GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEec-----CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence 99987643333457789999999999995 36899999999999999999999999999999999999999995 6
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++++.|.++++|-+.++++...+..|+++|.++++.+...+... ..++
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i--------------------------------~~at 298 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI--------------------------------SEAT 298 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch--------------------------------hhcc
Confidence 78999999999999999888889999999999998775221000 0011
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
++. ..++++++++.|++|++||+.+|.++.++.+|.++|.+++|+|.|
T Consensus 299 ~~~--------------------------------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 299 GST--------------------------------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred CCC--------------------------------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence 110 046789999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+||+++.+|+++++||++.++.+.++..|...+++++|+.+..+++||+-|.++++|.
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999996
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-45 Score=315.06 Aligned_cols=247 Identities=31% Similarity=0.547 Sum_probs=227.9
Q ss_pred cccccccCCcccEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
....++.||++.|.++.|+|. +..||||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+.++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 345678999999999999998 568999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY 255 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~ 255 (473)
||+.++.... ...||...|.+++|+| ++..++|||.|..-+|||+++++++..+.||..+|.++.|+|+|+ ++
T Consensus 288 WD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 288 WDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred cccccchhhH-hhcccccccceeEecC-----CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEe
Confidence 9999987553 4689999999999987 677899999999999999999999999999999999999999996 88
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
||+.|++++|||++..+.+
T Consensus 362 Tgs~Dnt~kVWDLR~r~~l------------------------------------------------------------- 380 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSEL------------------------------------------------------------- 380 (459)
T ss_pred ecCCCCcEEEeeecccccc-------------------------------------------------------------
Confidence 9999999999998764332
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
..+.+|.+.|+.|.|+| .|.+|+|+|.|+++++|...++.++..+.||.+.|.++.++||+
T Consensus 381 ------------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 381 ------------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred ------------------eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 23456788899999999 78999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEE
Q 011978 415 RLLLSGSKDSTLKVWD 430 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd 430 (473)
+++++++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=326.21 Aligned_cols=371 Identities=27% Similarity=0.456 Sum_probs=299.4
Q ss_pred ccHHhHHHhcCC-CcccEEEEEEEece----------eEEEee--cccccccccCCcccEEEEEECCCCC--eEEEEeCC
Q 011978 65 VPLGSYLEKHKV-SVEKVLSIVYQPQA----------VFRIRP--VNRCSATIAGHTEAVLSVAFSPDGR--QLASGSGD 129 (473)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~gh~~~V~~~~~sp~~~--~lat~s~d 129 (473)
.+.+.+++.-+. +..+++..++.|.. ..+++. .+.|...++||.+.|.++.|+|+-. .|++|..|
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 344566666555 67778888888754 223443 3568899999999999999999865 48899999
Q ss_pred CeEEEEeCCCCce-eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc----------------------
Q 011978 130 TTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG---------------------- 186 (473)
Q Consensus 130 ~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~---------------------- 186 (473)
+++++||+.+... +.....|...|++++|++|+..+++++.|..+.+||+.+.+...
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999986654 66778899999999999999999999999999999974321100
Q ss_pred ---------------------------c---------------------------------------cCCCcCCcEEEEE
Q 011978 187 ---------------------------N---------------------------------------PLSGHKKWITGIS 200 (473)
Q Consensus 187 ---------------------------~---------------------------------------~~~~~~~~v~~i~ 200 (473)
+ .+.|.++.|..+.
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence 0 0012222222222
Q ss_pred ecee-------------------------------------ccCCCCceEEEeeCCCcEEEEECCCC----eEEEEecCc
Q 011978 201 WEPV-------------------------------------HLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH 239 (473)
Q Consensus 201 ~~~~-------------------------------------~~~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h 239 (473)
|... .....+..++||+.|.++++|.+..+ .++....||
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence 2110 00012347899999999999977443 345566799
Q ss_pred cccEEEEEecCCC--eEEEeecCCeEEEEECCCCcee---------eeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI---------RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
...|.+++++..+ .+++++.|+++++|++...+.- .....|+..|++++++|+.
T Consensus 411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd--------------- 475 (775)
T KOG0319|consen 411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND--------------- 475 (775)
T ss_pred ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC---------------
Confidence 9999999997554 6899999999999998763211 1235578889999888763
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
..+++||.|++.++|++. .......+.||...+.+|.|+|..+.+||+|.|++|+||.
T Consensus 476 ---------------------kLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 476 ---------------------KLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred ---------------------ceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 358999999999999987 4455678899999999999999999999999999999999
Q ss_pred CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
+.+..++.+|.||...|..+.|-.+|..|+|++.||-|++|++.++.+..++.+|.++|++++-+|+..+++||+.|+.|
T Consensus 534 is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 534 ISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRI 613 (775)
T ss_pred eccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
.+|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 9995
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-42 Score=293.85 Aligned_cols=328 Identities=24% Similarity=0.400 Sum_probs=262.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
..++..|+++|++++.+|+.+++|||++|....+|++.++.....+.+|+..|+++.||.||.+||+|+.+|.|++|+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45678899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~ 259 (473)
++....... .--..+.=+.|+| ....|+.|+.||.+.+|.+.++...+.+.||+.+++|-.|.|+| .++++..
T Consensus 137 tg~~~~~~~-~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 137 TGGEQWKLD-QEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred cCceEEEee-cccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 887554332 1222334445555 45689999999999999999988888999999999999999999 5899999
Q ss_pred CCeEEEEECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 260 DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
||+|++|+..+++.+..+.+..+ ...++.+.. .+..++.|+.+
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~------------------------------------~~~~~~~g~~e 254 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNL------------------------------------AGSTLTKGNSE 254 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCcccccc------------------------------------ccceeEeccCC
Confidence 99999999999988877653221 111111111 12234455555
Q ss_pred ceEEEEeCCCCCCC-------eeeecCcccceeE---EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978 339 FTMFLWEPAVSKQP-------KTRMTGHQQLVNH---VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 339 ~~i~iwd~~~~~~~-------~~~~~~~~~~v~~---v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v 408 (473)
+.+++-....++.. ......+...+.+ +.++..-.+.|+|+.||+|-|||+.+.++...+. |..+|..+
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l 333 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKL 333 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEE
Confidence 54444432222111 0111233334444 4555567789999999999999998877666665 88899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|-+ ..+|++++.||.|+.||.++|+++.++.||...|++++++|++++++|+|.|++.+||.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9998 77999999999999999999999999999999999999999999999999999999985
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-42 Score=282.60 Aligned_cols=284 Identities=29% Similarity=0.542 Sum_probs=240.0
Q ss_pred cccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCC-----CCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN-----TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
..+++||++.|..++..+. .+.+.+++.|.++.+|++. .+.+...+++|+..|..+..++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4578899999999999988 4678899999999999875 356778899999999999999999999999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc--cccEEEEEecCCC
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG 252 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 252 (473)
++||+.+|+. .+.+.+|...|.+++++| +..++++|+.|+++++|+.. +.|.+++..+ ...|+|+.|+|+.
T Consensus 88 rlWDl~~g~~-t~~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 88 RLWDLATGES-TRRFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEecCCcE-EEEEEecCCceEEEEecC-----CCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC
Confidence 9999999854 456899999999999887 56799999999999999976 4555555444 7889999999873
Q ss_pred ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+|++++.|+++++||+++-+..
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~------------------------------------------------------- 185 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLR------------------------------------------------------- 185 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchh-------------------------------------------------------
Confidence 6889999999999998764332
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
..+.+|...++.+++||||.++++|+.||.+.+||+..++.+..+. |...|.+++
T Consensus 186 ------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 186 ------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred ------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence 2234677889999999999999999999999999999999988875 788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeeccc----cc-----CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GH-----ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|+...|+.+ .+..|+|||+.+++.+.++. +. ...-..++||+||..|.+|-.|+.|++|.
T Consensus 241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 241 FSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99997766655 45669999999987765543 21 12235689999999999999999999996
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.3e-42 Score=299.52 Aligned_cols=320 Identities=28% Similarity=0.494 Sum_probs=280.0
Q ss_pred CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCC--c----eeEE----E----cCCCCCEEEEEECCCCCeEEEEec
Q 011978 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ--T----PMFK----C----TGHKNWVLCIAWSADGKHLVSGSK 170 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~--~----~~~~----~----~~~~~~v~~l~~s~dg~~l~s~~~ 170 (473)
+|..+|.+++|+|-.. .+|+++.|-+.|+|++... . ..++ . ......|++|+|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999887 8899999999999998631 1 0000 0 012357999999999999999999
Q ss_pred CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
||.+++|+..... ...+..|+++|.++.|+. .+.++++++.|+++.+||..++.....+.-|..+-..+.|-.
T Consensus 256 ~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 256 DGEARIWNKDGNL--ISTLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS 328 (524)
T ss_pred CcEEEEEecCchh--hhhhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence 9999999975443 235788999999999986 567999999999999999999999998888888878889998
Q ss_pred CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
+..+++++.|+.|+++.+.....+.++.+|...|.++.+.|.. .
T Consensus 329 ~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg------------------------------------~ 372 (524)
T KOG0273|consen 329 NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG------------------------------------S 372 (524)
T ss_pred CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC------------------------------------c
Confidence 8899999999999999999999999999999999999987653 3
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC---------cEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---------QWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~lasgs~d~~v~lwd~~~~~~~~~~~~h 401 (473)
.|+++|+|++++||.... ......+.+|...|..+.|+|.| ..+++++.|++|++||...|.++..|..|
T Consensus 373 LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 589999999999998543 33456688899999999999975 47999999999999999999999999999
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
..+|.+|+|||+|+++|+|+.||.|.||++++++..+.+.+ .+.|+.|+|+.+|.+|..+-.|+.+.+
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 99999999999999999999999999999999999988876 456999999999999998888888766
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=274.51 Aligned_cols=290 Identities=24% Similarity=0.406 Sum_probs=250.0
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEE
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI 199 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i 199 (473)
-+|+++|.|-+||+|...++.+...++..+..|..|..+||++.|++++. ..|++||+++++. ....+.+|++.|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 46899999999999999999999999888889999999999999988775 7899999998876 445678999999999
Q ss_pred EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeee
Q 011978 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~ 278 (473)
.|.. +++.+++||+||++||||++...+...+ .|..+|+++..+|+. .|++|..+|.|++||+....+.+.+-
T Consensus 90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEee-----cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 8865 6789999999999999999986665544 467899999999876 69999999999999999887766653
Q ss_pred -ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-----CCC
Q 011978 279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQP 352 (473)
Q Consensus 279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~ 352 (473)
.....|.++.+.++. ..++.+...|+.++|++... ..|
T Consensus 164 Pe~~~~i~sl~v~~dg------------------------------------sml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDG------------------------------------SMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred CCCCcceeeEEEcCCC------------------------------------cEEEEecCCccEEEEEccCCCccccceE
Confidence 345567777777653 24777788899999997542 245
Q ss_pred eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 353 ~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
..++..|...+....+|||+++||++|.|.+++||+.++. +....+++|..++++.+||.||+||++|+.|+.+++||+
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 5678889999999999999999999999999999999887 666788999999999999999999999999999999999
Q ss_pred CCCceeecccccCCCEEEEEEe
Q 011978 432 RTQKLKQDLPGHADEVFAVDWS 453 (473)
Q Consensus 432 ~~~~~~~~~~~h~~~i~~l~~s 453 (473)
..++......||.....+++..
T Consensus 288 ~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 288 SAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccCceeeecCCcccccEEEEee
Confidence 9999999999998877776653
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=311.06 Aligned_cols=340 Identities=26% Similarity=0.443 Sum_probs=279.1
Q ss_pred ecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 96 ~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
++-...++..||-+.|.++.|+.|.++|++||.|.++|+|+++..+. ...+.+|.+.|...-|..|...+++.+.||.
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~ 212 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA 212 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence 33445677889999999999999999999999999999999987665 4567899999999999999999999999999
Q ss_pred EEEeeCCC-----------------------Ccc-c---------cccCCCcCCcEEEEEecee----------------
Q 011978 174 LQCWDPQT-----------------------GKP-S---------GNPLSGHKKWITGISWEPV---------------- 204 (473)
Q Consensus 174 i~iwd~~~-----------------------~~~-~---------~~~~~~~~~~v~~i~~~~~---------------- 204 (473)
+.+|.... ++. . ...+......+++.+|++.
T Consensus 213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLY 292 (893)
T ss_pred EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEE
Confidence 99997651 000 0 0001111133444444331
Q ss_pred ---------------------ccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978 205 ---------------------HLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (473)
Q Consensus 205 ---------------------~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~ 261 (473)
.++..+..++.|+. -|.+-+|+..+...+....||...++|++++||| .+++|+.||
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG 372 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence 12233455555443 3788888888888888888999999999999998 588999999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.|++||...|-++.++..|+..|..+.++.. ...+++.+.||++
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtV 416 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTV 416 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeE
Confidence 9999999999999999999999999987643 3468999999999
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
+.||+......++.....+....|++..|.|.++..|+.|. .|.+|+.++|+++.++.||.+||.+++|+|+|..||++
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence 99998776665555555566789999999999999999886 69999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCc-eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 421 SKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.|.+|++||+-... ...++. +...+++++|+|||+.||+++.||.|.+|+
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 999999999996542 334453 567799999999999999999999999996
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-40 Score=291.89 Aligned_cols=371 Identities=23% Similarity=0.385 Sum_probs=290.8
Q ss_pred eecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 95 RPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 95 ~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
+..+....++.||+..|++++|-|... +++||++|++|.+|+-...+-...+..|..-|.|+.|+|||.++++++.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 445566678899999999999999876 5999999999999986544444556789999999999999999999999999
Q ss_pred EEEeeCCCCcccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc----ccEEEEE
Q 011978 174 LQCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVK 247 (473)
Q Consensus 174 i~iwd~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~ 247 (473)
+.+||-.+|+..... -.+|++.|.+++|+| +..+|+|++.|.++||||+.+++++.++.-.. ..+-| -
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsP-----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~-l 287 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC-L 287 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECC-----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE-E
Confidence 999999999876532 248999999999998 66799999999999999999999888775322 23333 4
Q ss_pred ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHH-----HHhhh
Q 011978 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA-----ALERY 321 (473)
Q Consensus 248 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 321 (473)
|. ++.|++-+.+|+|.+++.......+.+.+|...|.++.++++.. +..+.+|+....|......... .....
T Consensus 288 Wq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 288 WQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred Ee-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 55 55789999999999999999999999999999999999998753 4555555544333221111100 01112
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCC-----------CCCCeee-------------------ecCc--------ccce
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAV-----------SKQPKTR-------------------MTGH--------QQLV 363 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~-----------~~~~~~~-------------------~~~~--------~~~v 363 (473)
..+.....+.+++++.|.++++.+... ..+|... +..+ .-..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 223334447789999999999886421 1112110 1111 1235
Q ss_pred eEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-cc
Q 011978 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DL 440 (473)
Q Consensus 364 ~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~ 440 (473)
.++|++|++..+|.|+.|+.|++|.+..+.. ...+..|.++|++++||||+.|||++...+.+.+||+.+.+... .+
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence 6799999999999999999999999886543 34567799999999999999999999999999999999877643 34
Q ss_pred cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 441 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.-|..+|++++|+|+.+++|+|+-|-.|.||.
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 44999999999999999999999999999996
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=276.94 Aligned_cols=283 Identities=26% Similarity=0.554 Sum_probs=242.6
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.+.||.+.|+.+.|+|+|..+|+|+.|..|.+|++... +....+++|.+.|..+.|++|+..|++++.|.+++.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 46799999999999999999999999999999996543 44567789999999999999999999999999999999999
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d 260 (473)
|+... ...+|...|+.+. |...+ ...+.+++.||++++||++...+++++.. ...++++.|..++ .+++|+-|
T Consensus 122 G~~~r-k~k~h~~~vNs~~--p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 122 GKRIR-KHKGHTSFVNSLD--PSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ceeee-hhccccceeeecC--ccccC--CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 98765 4678999888876 44332 24677899999999999998888776643 4578899998765 68899999
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
+.|++||++.+.....
T Consensus 196 n~ikvWd~r~~d~~~~---------------------------------------------------------------- 211 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYT---------------------------------------------------------------- 211 (338)
T ss_pred CceeeeccccCcceEE----------------------------------------------------------------
Confidence 9999999876654433
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----CceEEEeeCCcc----CEEEEEEec
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG----PVYQISWSA 412 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----~~~~~~~~~h~~----~v~~v~~sp 412 (473)
+.||.+.|+.+..+|+|.++.+-+.|.++++||.+- ..++.++.+|.. ....++|||
T Consensus 212 ---------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 212 ---------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ---------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 345667788889999999999999999999999863 356888887643 346789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
+++++..|+.|..+++||......+..++||...|+.++|+|....|.+++.|++|.+
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999998999999999999999999999999999999999875
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-42 Score=296.45 Aligned_cols=280 Identities=29% Similarity=0.587 Sum_probs=242.5
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
..+|+.+.|.|+|++|++|+..|.+.+|+..+-.-...+..|..+|.++.|+++|.++++|+.+|.|++|+..-... ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HH
Confidence 45799999999999999999999999999754332234568999999999999999999999999999999764332 22
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVW 266 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~w 266 (473)
....|...|.+++|+|. ...|++|+.||+|+|||....+....+.||.-.|.|+.|.|. +++++|+.|..|++|
T Consensus 175 ~~ahh~eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred hhHhhhhhhheeccCCC-----CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 23344488999999983 358999999999999999988888888999999999999985 589999999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
|.++|.++.++.
T Consensus 250 DprSg~cl~tlh-------------------------------------------------------------------- 261 (464)
T KOG0284|consen 250 DPRSGSCLATLH-------------------------------------------------------------------- 261 (464)
T ss_pred cCCCcchhhhhh--------------------------------------------------------------------
Confidence 999988765544
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCc
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDST 425 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~ 425 (473)
+|...|..+.|+|++++|+++|.|..++++|+++.+.+..+++|...|+++.|+| ...+|.+|+.||.
T Consensus 262 -----------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 262 -----------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred -----------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 3455678889999999999999999999999999999999999999999999999 5568999999999
Q ss_pred EEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|..|.+...+.+.. -.+|...|++++|+|=|..|++|+.|+++++|.
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999985554443 357999999999999999999999999999995
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=281.10 Aligned_cols=289 Identities=30% Similarity=0.509 Sum_probs=255.0
Q ss_pred cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
+-++.+.+.||.+.|.|+++.|-.+++++|+.|++|+|||+.+++....+.+|-..|..+++|+-..++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY 255 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~ 255 (473)
||++..+.+. .+.||-..|.+++..|. -+.+++|+.|.++++||+++...+.++.||...|..+.+.+ |+.++
T Consensus 220 wDLe~nkvIR-~YhGHlS~V~~L~lhPT-----ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 220 WDLEYNKVIR-HYHGHLSGVYCLDLHPT-----LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EechhhhhHH-HhccccceeEEEecccc-----ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999877654 47889999999988773 35899999999999999999999999999999999999876 66899
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+|+.|++|++||++.|+....+.
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt--------------------------------------------------------- 316 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLT--------------------------------------------------------- 316 (460)
T ss_pred EecCCceEEEeeeccCceeEeee---------------------------------------------------------
Confidence 99999999999998887554333
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
.|...+++++.+|....+|+++.|. |+-|++..|..+..+.+|++.|++++.+.||
T Consensus 317 ----------------------~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 317 ----------------------HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred ----------------------cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-
Confidence 3445678888999999999999884 9999999999999999999999999998886
Q ss_pred EEEEEeCCCcEEEEECCCCceeecc-----cc---cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 416 LLLSGSKDSTLKVWDIRTQKLKQDL-----PG---HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++++|++.|.+..||.+++-..+.. +| .+..|++.+|...|..|++|..|++|++|.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 6778999999999999886543322 11 235799999999999999999999999996
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-41 Score=313.40 Aligned_cols=275 Identities=32% Similarity=0.579 Sum_probs=230.9
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
-++.--...++|..|++|+..||.|-.|..|++|.+...+ +..+++- .. -..+=+.+.|-.+.+.|.+.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~-~~---------l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDA-SD---------LSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccch-hh---------hccccccccchhhhhccccC
Confidence 3333345679999999999999999999999999987542 2222211 11 11222334444455666554
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD 260 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d 260 (473)
+... ..+.+|.++|.+..|+| +.+.+++||.|+++|+|.+.+..++...+||..+|+++.|+|-|+ ++|++.|
T Consensus 441 ~~~~-~~L~GH~GPVyg~sFsP-----d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 441 SGTS-RTLYGHSGPVYGCSFSP-----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred Ccee-EEeecCCCceeeeeecc-----cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCC
Confidence 4333 34789999999999988 457899999999999999999999999999999999999999995 8899999
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
++.++|.....+
T Consensus 515 ~tArLWs~d~~~-------------------------------------------------------------------- 526 (707)
T KOG0263|consen 515 QTARLWSTDHNK-------------------------------------------------------------------- 526 (707)
T ss_pred ceeeeeecccCC--------------------------------------------------------------------
Confidence 999999754322
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
+...+.+|-..|.|++|+|+..|+|+||.|.+||+||..+|..++.|.||.++|.+|+|||+|++||+|
T Consensus 527 -----------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 527 -----------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred -----------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence 222345677789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.||.|++||+.+++....+.+|.+.|+++.||.||..||+||.|++|++|+
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999996
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-39 Score=263.97 Aligned_cols=251 Identities=28% Similarity=0.507 Sum_probs=214.2
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
+.....+.||+..|..+..++||++.++++.|+++|+||+.++++...+.+|...|.+++|++|.++|++|+.|.+|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s 256 (473)
+....-.....-.+++.+|+++.|+|.. ....+++++.|++|++||+++.+....+.||+..++.++++||| +.++
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 9876544333333448999999999964 34589999999999999999999999999999999999999999 4678
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
|+.||.+.+||+..++.+.++.
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~---------------------------------------------------------- 231 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLE---------------------------------------------------------- 231 (315)
T ss_pred CCCCceEEEEEccCCceeEecc----------------------------------------------------------
Confidence 9999999999999887654432
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC----C-----ccCEEE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG----H-----VGPVYQ 407 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~----h-----~~~v~~ 407 (473)
|...|.+++|+|+.-.|+.+.. ..|+|||+.++.++..++. . .....+
T Consensus 232 ----------------------a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 232 ----------------------AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred ----------------------CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 3346888999998777776654 4699999999887765532 1 223578
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECC
Q 011978 408 ISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 408 v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
++||+||+.|.+|-.|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999999999999999999875
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=303.39 Aligned_cols=288 Identities=35% Similarity=0.648 Sum_probs=251.0
Q ss_pred cccCC-cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 103 TIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 103 ~~~gh-~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
.+.+| ...|.++.|+|+|+.+++++.|+.+++|+..+.. ....+.+|...|.+++|+||++++++++.|+++++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444 7899999999999999999999999999997666 55666899999999999999999999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 258 (473)
.........+.+|...|++++|+|. ++.+++|+.|++|++||++++++...+.+|...|++++|++++ .+++++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 5443334467799999999999884 4689999999999999999999999999999999999999987 588889
Q ss_pred cCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 259 QDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
.|+.|++||+.++.. ...+..+
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~-------------------------------------------------------- 331 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGA-------------------------------------------------------- 331 (456)
T ss_pred CCccEEEEECCCCceeeeecccCC--------------------------------------------------------
Confidence 999999999988763 2221110
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC---EEEEEEecC
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP---VYQISWSAD 413 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~---v~~v~~sp~ 413 (473)
.... .+++++|+|++.++++++.|+.+++||+..+.+...+.+|... +.+...++.
T Consensus 332 --------------------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 332 --------------------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred --------------------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 0112 4788999999999999999999999999999999999999874 445556789
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEe--CCCcEEecc
Q 011978 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGG--KDRVLKLWM 472 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~--~D~~i~~w~ 472 (473)
+.++++|+.|+.|++||+.++.....+.+| ...+..+.|+|..+++++++ .|+.+++|.
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 999999999999999999999889999999 88899999999999999999 799999996
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-40 Score=280.99 Aligned_cols=268 Identities=30% Similarity=0.561 Sum_probs=231.6
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
..+.|.|+.+ |...+++|..|++|+|||.++..++..+.||++.|.|+.| |.+.|++|+.|.+|++||+++|+++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 4578999988 5677999999999999999998888889999999999999 46799999999999999999999775
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecCccccEEEEEecCCCeEEEeecCCeE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i 263 (473)
.+-+|...|-.+.|+. +++++++.|+++.+||+.... +...+.||.++|..+.|+.. ++++++.|.+|
T Consensus 272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi 342 (499)
T KOG0281|consen 272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI 342 (499)
T ss_pred -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence 4668889999888754 589999999999999987653 33456799999999999854 89999999999
Q ss_pred EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 343 (473)
++|+..++..++++.+|...|
T Consensus 343 kvW~~st~efvRtl~gHkRGI----------------------------------------------------------- 363 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGI----------------------------------------------------------- 363 (499)
T ss_pred EEEeccceeeehhhhcccccc-----------------------------------------------------------
Confidence 999999998888777665433
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
-|+.+ .|+++++||.|.+|++||...|.++..++||..-|.++.| |.+.+++|+.|
T Consensus 364 --------------------AClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 364 --------------------ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred --------------------eehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 33332 5789999999999999999999999999999999999999 56789999999
Q ss_pred CcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 424 STLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 424 g~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|++||+..+. .+.++..|.+.|+.+.|. ...+++++.|.+|.||+
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999997643 234567799999999994 57899999999999996
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=255.92 Aligned_cols=266 Identities=26% Similarity=0.426 Sum_probs=225.2
Q ss_pred CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCcc
Q 011978 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHT 240 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~ 240 (473)
-+|+++++|.+|++|...+|.+... +......|+.+...| +. .++.++....||+||+++++ .+.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-iqh~dsqVNrLeiTp-----dk-~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-IQHPDSQVNRLEITP-----DK-KDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-EecCccceeeEEEcC-----Cc-chhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 4789999999999999999988753 344456688877655 33 34445556899999998865 578899999
Q ss_pred ccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 241 LAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 241 ~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
..|+++.|..+|. +++|+.||++||||++...+.+.+ .+..+|+++.++|+
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpn--------------------------- 135 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPN--------------------------- 135 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCC---------------------------
Confidence 9999999999885 999999999999999985544444 45588999988875
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC------c
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------K 393 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~------~ 393 (473)
...|++|..+|.|++||+.........+......|.++++.|||.+++.+...|..++|++... +
T Consensus 136 ---------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 136 ---------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred ---------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 2368999999999999987665445555556678999999999999999999999999998654 3
Q ss_pred eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 394 FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 394 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++..|+.|.+-+..+.+|||+++||++|.|.+++||+.... +....+.+|+.-++.++||.||+||++|+.|++.++|.
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 56678999999999999999999999999999999999886 56678899999999999999999999999999999996
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.3e-37 Score=281.12 Aligned_cols=286 Identities=43% Similarity=0.746 Sum_probs=250.0
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.++.+|.++|.+++|+|++++|++++.||.|++|++.++........|...+.++.|+|+++.|++++.+|.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999998877777888999999999999999999999999999999987
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD 260 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d 260 (473)
++... .+..|...+.++.|.|. ...+++++.++.+.+||+.+++....+..|...+.++.|++++. +++++.|
T Consensus 83 ~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 83 GECVR-TLTGHTSYVSSVAFSPD-----GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred ccceE-EEeccCCcEEEEEEcCC-----CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 65433 35678888999998873 34677777799999999999998888889999999999999765 5555569
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
+.+++||+++++.+..+.
T Consensus 157 ~~i~i~d~~~~~~~~~~~-------------------------------------------------------------- 174 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT-------------------------------------------------------------- 174 (289)
T ss_pred CcEEEEEccccccceeEe--------------------------------------------------------------
Confidence 999999987554332221
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
.|...+.+++|+|+++.+++++.|+.+++||..+++.+..+..|...+.+++|+|++.+++++
T Consensus 175 -----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 175 -----------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred -----------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 233467889999999999999999999999999999998888899999999999999999998
Q ss_pred eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.+++|.
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8899999999998888888889999999999999999999999999999995
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-38 Score=276.29 Aligned_cols=288 Identities=28% Similarity=0.522 Sum_probs=250.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
...|++++|+.+|..||+|+.||.+|||+.... .+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+|... +
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~-q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK-Q 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE-E
Confidence 367999999999999999999999999997654 45567789999999999999999999999999999999887654 3
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w 266 (473)
.+.-|..+-..+.|.. ...|++++.|+.|+++.+.....+.++.||...|.++.|++.+ +|++++.|+++++|
T Consensus 313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 4555666655677754 3479999999999999999999999999999999999999987 58899999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
....+.....+..|...|..+.++|........ .....+++++.|.++++||.
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~---------------------------~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP---------------------------NMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCC---------------------------cCCceEEEeecCCeEEEEEc
Confidence 999999999999999999999998864332111 12346899999999999998
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL 426 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i 426 (473)
..+ .+...+..|+..|.+++|+|+|+|+|+|+.||.|.+|+.++++.++.+++ .+.|..|+|+.+|.+|..+-.|+.+
T Consensus 440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCc
Confidence 654 45566778999999999999999999999999999999999999999886 4569999999999999999999999
Q ss_pred EEEECC
Q 011978 427 KVWDIR 432 (473)
Q Consensus 427 ~iwd~~ 432 (473)
.+.|++
T Consensus 518 cvldlr 523 (524)
T KOG0273|consen 518 CVLDLR 523 (524)
T ss_pred eEEEec
Confidence 999875
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=281.52 Aligned_cols=322 Identities=22% Similarity=0.443 Sum_probs=268.9
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-CeEEEeeCCCCcccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSG 186 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~ 186 (473)
...|++.+|++.-..||+|=..|...+|++.....++.+.-....|..++|+..|..|+.|+.. |++.+|++++...+.
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 3789999999999999999999999999999988888888777889999999999999998765 899999998765432
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~ 265 (473)
..++|...+++++++| ++.++++|+.||+|++||...+-|+.++..|+..|+.+.|...| .+++++-||+|+.
T Consensus 345 -KQQgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 345 -KQQGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred -eccccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 3578999999999987 67899999999999999999999999999999999999999877 5889999999999
Q ss_pred EECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-ceEEE
Q 011978 266 WETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFL 343 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i 343 (473)
||+...+..+++..... .-.++++.|. .+.+..|+.| ..|++
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~s------------------------------------GelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPS------------------------------------GELVCAGAQDSFEIFV 462 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCC------------------------------------CCEEEeeccceEEEEE
Confidence 99999998888865433 2344544443 2344455544 47999
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeC
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
|+...+ +....+.||.++|.+++|+|+|..||+||.|++||+||+-... .+.+++ +..-+..++|+|||+.||++.-
T Consensus 463 WS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 463 WSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence 998654 4566789999999999999999999999999999999986542 333443 5667999999999999999999
Q ss_pred CCcEEEEECCCCceeecccc--------------------cCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 423 DSTLKVWDIRTQKLKQDLPG--------------------HADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~~~~~~--------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
||.|.+||+........+.| .....+.+++|+||+.+++||..+.|.++..
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 99999999876544332221 1245788999999999999999999998863
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=251.66 Aligned_cols=283 Identities=28% Similarity=0.511 Sum_probs=232.1
Q ss_pred ccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCc---eeEEE-cCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~---~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
..+.||++.|..++|+|- |..||+|+.|+.||||+...+. +...+ .+|+..|.+++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 456899999999999998 8899999999999999987422 22222 379999999999999999999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~ 255 (473)
|.-..+ ..+++..+.||...|.|++|+.+| +|+
T Consensus 88 w~k~~~----------------------------------------------efecv~~lEGHEnEVK~Vaws~sG~~LA 121 (312)
T KOG0645|consen 88 WKKEDG----------------------------------------------EFECVATLEGHENEVKCVAWSASGNYLA 121 (312)
T ss_pred eecCCC----------------------------------------------ceeEEeeeeccccceeEEEEcCCCCEEE
Confidence 953322 235566788999999999999887 688
Q ss_pred EeecCCeEEEEECCCC---ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 256 TGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+++.|+.+-+|.+..+ .++..++.|.+.|..+.++|. .+.|
T Consensus 122 TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt------------------------------------~dlL 165 (312)
T KOG0645|consen 122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT------------------------------------EDLL 165 (312)
T ss_pred EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC------------------------------------ccee
Confidence 9999999999998754 456678899999999988874 3469
Q ss_pred EEecCCceEEEEeCCCC--CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
++++.|++|++|+.... -.....+.+|...|.+++|+|.|..|++++.|++++||-..+. .-.-|..+++.++|
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence 99999999999985522 1345678899999999999999999999999999999975522 11237889999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC------ce-eecccccCCCEEEEEEeeC-CCEEEEEeCCCcEEecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQ------KL-KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~------~~-~~~~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~ 472 (473)
. ...||+++.|+.|++|..... +. ...-..|...|+++.|.|. .+.|++++.||.+++|.
T Consensus 242 ~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 242 D--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred c--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8 458999999999999976532 11 1233468889999999995 67999999999999995
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-38 Score=272.04 Aligned_cols=287 Identities=26% Similarity=0.397 Sum_probs=238.2
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
....+..|++.|+-+.||++|++||+|+.|.+.-+|++..... .+.+.+|..+|.-+.||||.++|++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3456788999999999999999999999999999999754433 5677899999999999999999999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC-eE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VI 254 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l 254 (473)
||..+|........+|...+.+.+|.| ++.+|++|+.|+++..||+.... .....+- ...|.+++..+|| .+
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 999999877666666778899999998 55689999999999999987443 2223332 2458889998888 47
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++.+.|..|++++.++.....
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~----------------------------------------------------------- 390 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRG----------------------------------------------------------- 390 (519)
T ss_pred EEEecccceeeechhhhhhhc-----------------------------------------------------------
Confidence 788899999998865421110
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC--EEEEEEec
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQISWSA 412 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~--v~~v~~sp 412 (473)
+..-...|+++++|.|++++.+-=.+..+++||++..+.+..+.||... +..-+|--
T Consensus 391 ---------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 391 ---------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred ---------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 0011245888999999999999999999999999988888899998643 44455543
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978 413 -DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM 472 (473)
Q Consensus 413 -~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~ 472 (473)
+..++++||.|+.|+||+..+++++..+.||...|++++|+|... ++||||.||+||||.
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 557999999999999999999999999999999999999999764 779999999999995
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.2e-39 Score=281.81 Aligned_cols=294 Identities=29% Similarity=0.511 Sum_probs=245.7
Q ss_pred EeecccccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978 94 IRPVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (473)
Q Consensus 94 ~~~~~~~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d 171 (473)
+.-+.+.+..+.||+..|.++.|.| .+.+|++++.|+.|+||++.. +.++..+.+|..+|.++.|+++|..+++++.|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 3345667788999999999999999 889999999999999999876 77888899999999999999999999999999
Q ss_pred CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (473)
+.|++||.++|++... +. ....++|+.|.|+
T Consensus 280 ~~lKlwDtETG~~~~~------------------------------------------------f~-~~~~~~cvkf~pd 310 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSR------------------------------------------------FH-LDKVPTCVKFHPD 310 (503)
T ss_pred eeeeeeccccceEEEE------------------------------------------------Ee-cCCCceeeecCCC
Confidence 9999998888864321 10 0123567778776
Q ss_pred C--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 252 G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 252 ~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+ .+++|+.|+.|+.||.++++.+++...|-..|+.+.+-++ .
T Consensus 311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------------------------------------g 354 (503)
T KOG0282|consen 311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------------------------------------G 354 (503)
T ss_pred CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------------------------------------C
Confidence 5 6889999999999999999999988888888888877654 3
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---ceEEEeeCCc--cC
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHV--GP 404 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~--~~ 404 (473)
.+++++++|+++++|+.............+.-...++..+|++++++.-+.|+.|.++..... ..-..|+||. |.
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 468999999999999976654444333334445678999999999999999999999986532 2234678885 45
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEecc
Q 011978 405 VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM 472 (473)
Q Consensus 405 v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w~ 472 (473)
-..|.|||||.+|++|+.||.+.+||.++-++...++.|...+..+.|+|.. ..+|++|.||.|++|.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6779999999999999999999999999999999999999999999999975 4789999999999995
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.9e-37 Score=253.25 Aligned_cols=246 Identities=27% Similarity=0.459 Sum_probs=217.8
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC------ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~------~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
+.++-.+..|..++|+|.|+++|.|+-|+...||++.+. +....+.+|.+.++|+.|.+| .+|++++.|.+..
T Consensus 91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCa 169 (343)
T KOG0286|consen 91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCA 169 (343)
T ss_pred eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEE
Confidence 334556788999999999999999999999999999865 234457899999999999875 5899999999999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I 254 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l 254 (473)
+||+++|+.. ..+.+|.+.|.++++.|. +++.|++|+-|+..++||++.+.+.+.|.||...|.++.|.|+|. +
T Consensus 170 lWDie~g~~~-~~f~GH~gDV~slsl~p~----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 170 LWDIETGQQT-QVFHGHTGDVMSLSLSPS----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred EEEcccceEE-EEecCCcccEEEEecCCC----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCee
Confidence 9999999865 457899999999998885 457899999999999999999999999999999999999999995 8
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++|+.|+++|+||++..+.+..+...
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~------------------------------------------------------ 270 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHD------------------------------------------------------ 270 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccC------------------------------------------------------
Confidence 99999999999999987655433210
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
.-...|++++||..|++|.+|..|.++.+||.-.++.+..+.+|.+.|+++..+|||
T Consensus 271 -----------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 271 -----------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG 327 (343)
T ss_pred -----------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence 001358899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEE
Q 011978 415 RLLLSGSKDSTLKVWD 430 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd 430 (473)
.-+++||.|.+++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 9999999999999994
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-36 Score=277.17 Aligned_cols=373 Identities=25% Similarity=0.401 Sum_probs=288.8
Q ss_pred eEEEeecc--cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE
Q 011978 91 VFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168 (473)
Q Consensus 91 ~~~~~~~~--~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~ 168 (473)
.++++... ....++.||...|+++.|+..|.+||+||.|+.|.+||+-...-++.+.+|.+.|+.+-|..+.+.|++.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~ 167 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSV 167 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEe
Confidence 44555443 4456778999999999999999999999999999999999888899999999999999999888999999
Q ss_pred ecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-------------------
Q 011978 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL------------------- 229 (473)
Q Consensus 169 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~------------------- 229 (473)
+.|+.|++||+.+..+.. ..-.|...+.++.+.+ ..+++++.|+.+++|++..
T Consensus 168 sKDs~iK~WdL~tqhCf~-Thvd~r~Eiw~l~~~~-------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFE-THVDHRGEIWALVLDE-------KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred ccCceEEEEecccceeee-EEecccceEEEEEEec-------ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 999999999999876654 3456788888887655 4688888888888887610
Q ss_pred ----------------CeEE------------------------------------------------------------
Q 011978 230 ----------------RKCV------------------------------------------------------------ 233 (473)
Q Consensus 230 ----------------~~~~------------------------------------------------------------ 233 (473)
.+.+
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 0000
Q ss_pred -----------------------------------------------EEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978 234 -----------------------------------------------ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 234 -----------------------------------------------~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
..+.||...|.+++++.+..++..+..+.+++|
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW 399 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW 399 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence 112367788899999998887777788999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccc-eeeeccccCCCcccCCHHHHHH----HHHhhhhcc-cCCCCceEEEecCCce
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEY-ALRTGAFDHTGKQYSSPEEMKK----AALERYNKI-KGNAPERLVSGSDDFT 340 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~~~~d~~ 340 (473)
+..+.++++++... .+.+..+-|.. .+..+...+.-..|........ +.-.....+ ..+....+++++.|.+
T Consensus 400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence 99999999988654 44444444432 2233332222222221111110 111111111 1233457999999999
Q ss_pred EEEEeCCCC-----CCC------eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 341 MFLWEPAVS-----KQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 341 i~iwd~~~~-----~~~------~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
+++||.... .+. ..+...-.+.|.|+.+||||++||.+=.|.+|++|-+.+.+..-.+.||.-||.|+.
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 999985311 111 112223456799999999999999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
.|||+++++|||.|.+|+||-+.=|.+-+.+.+|.+.|+++.|-|+...+.++|.|+.++-|+|
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence 9999999999999999999999999998999999999999999999999999999999999975
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-35 Score=304.39 Aligned_cols=303 Identities=18% Similarity=0.323 Sum_probs=244.7
Q ss_pred CCeEEEEeCCCCceeEE-----EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC----ccccc--cCCCcCCcEE
Q 011978 129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG----KPSGN--PLSGHKKWIT 197 (473)
Q Consensus 129 d~~i~iwd~~~~~~~~~-----~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~----~~~~~--~~~~~~~~v~ 197 (473)
+|.+++|+......... +..|...|.+++|+|+|++|++|+.|+.|++|+.... ..... ....+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 67788888765433222 3458899999999999999999999999999997542 11000 0112345678
Q ss_pred EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CC-eEEEeecCCeEEEEECCCCceee
Q 011978 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG-VIYTGSQDCTIKVWETTQGKLIR 275 (473)
Q Consensus 198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~ 275 (473)
++.|.|. ...++++++.||+|++||+.+++.+..+.+|...|++++|++ ++ .|++|+.|++|++||++++..+.
T Consensus 537 ~l~~~~~----~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 537 GICWNSY----IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eEEeccC----CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 8888763 245899999999999999999999999999999999999985 44 68999999999999999988887
Q ss_pred eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee
Q 011978 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355 (473)
Q Consensus 276 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 355 (473)
.+..+ ..+.++.+.+. ....+++|+.|+.|++||+.....+...
T Consensus 613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 77654 35666655321 1346899999999999998766555667
Q ss_pred ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw 429 (473)
+.+|...|.+++|. ++.+|++++.|++|++||+.. .+++..+.+|...+..++|+|++.+||+|+.|+.|++|
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 78999999999997 788999999999999999874 35678899999999999999999999999999999999
Q ss_pred ECCCCceee-------------cccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 430 DIRTQKLKQ-------------DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 430 d~~~~~~~~-------------~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+........ ....|...|.+++|+|+++.|++|+.||.|+||.
T Consensus 736 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 736 HKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 976543221 1233456799999999999999999999999996
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-36 Score=242.94 Aligned_cols=283 Identities=24% Similarity=0.390 Sum_probs=242.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|.++|.++.|+-||++.++++.|.+||+|+...+..+....+|...|..++.+.|...+++|+.|..+.+||..
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEecCccccEEEEEecCCCeEEEee
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~s~~ 258 (473)
+|+... .+.+|.+.|+.+.|+. ....+++|+.|.++++||.++. +.++.+......|.++..+ +..|++|+
T Consensus 90 TGkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS 162 (307)
T KOG0316|consen 90 TGKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGS 162 (307)
T ss_pred cCeeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeec
Confidence 998765 5789999999998764 5568999999999999998764 5666676667788888776 34688999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.||++|.||++.|+.....
T Consensus 163 ~DGtvRtydiR~G~l~sDy------------------------------------------------------------- 181 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY------------------------------------------------------------- 181 (307)
T ss_pred cCCcEEEEEeecceeehhh-------------------------------------------------------------
Confidence 9999999999887643210
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE--EEEecCCCE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ--ISWSADSRL 416 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~--v~~sp~g~~ 416 (473)
-..+|+++.|++|++....++.|+++++.|-.+|+++..++||.+.-.. .+++....+
T Consensus 182 --------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 182 --------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred --------------------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 0135899999999999999999999999999999999999999876544 456667789
Q ss_pred EEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+++||.||.|++||+.....+..++.|... |..++++|....|+++..-+ +.+|.
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 999999999999999988888888777766 78999999988887776543 44553
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-36 Score=283.18 Aligned_cols=234 Identities=31% Similarity=0.562 Sum_probs=197.7
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
..++.||+++|..++|+|+.++|+++|+|++||+|.+.+...+...++|..+|+++.|+|-|-++||++.|++-++|...
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 34588999999999999999999999999999999999999999999999999999999998888887777777777654
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~ 259 (473)
. .+.+..+.||...|.|+.|+|+. ++++|+.
T Consensus 524 ~------------------------------------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs 555 (707)
T KOG0263|consen 524 H------------------------------------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS 555 (707)
T ss_pred c------------------------------------------------CCchhhhcccccccceEEECCcccccccCCC
Confidence 3 22233456788899999999986 7999999
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
|.++|+||+.+|..++.+
T Consensus 556 D~tVRlWDv~~G~~VRiF-------------------------------------------------------------- 573 (707)
T KOG0263|consen 556 DRTVRLWDVSTGNSVRIF-------------------------------------------------------------- 573 (707)
T ss_pred CceEEEEEcCCCcEEEEe--------------------------------------------------------------
Confidence 999999999887655433
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 419 (473)
.||...|.+++|||+|++||+|+.||.|.+||+.+++.+..+.+|.+.|.++.||.||..||+
T Consensus 574 -----------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 574 -----------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred -----------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence 356778999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCc------------------------eeecccccCCCEEEEEEeeCCCEEEE
Q 011978 420 GSKDSTLKVWDIRTQK------------------------LKQDLPGHADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~~------------------------~~~~~~~h~~~i~~l~~s~d~~~l~s 461 (473)
|+.|++|++||+..-. .+..+.....+|..|.|.-.+-.|+.
T Consensus 637 gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 637 GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAV 702 (707)
T ss_pred cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEe
Confidence 9999999999985421 12233344557888888876544443
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-36 Score=270.64 Aligned_cols=283 Identities=23% Similarity=0.387 Sum_probs=250.1
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
.+..|++.|.++.|||...+++++-..|.|.|||.+++..+..+...+-+|.+..|-+-.+.+++|+.|..|++|+.+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 44558999999999999999999999999999999999888888777889999999988889999999999999999999
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC--eEEEeec
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG--VIYTGSQ 259 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~ 259 (473)
+... .+.+|.+.|.++..+|.. ..++|+|.|-+|++||.+.. .|.+++.||...|.+++|+|.. .+++++-
T Consensus 88 ekV~-~FeAH~DyIR~iavHPt~-----P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 88 EKVK-TFEAHSDYIRSIAVHPTL-----PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred eeeE-EeeccccceeeeeecCCC-----CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 8765 578999999999988854 48999999999999999765 6888999999999999999854 7999999
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
|++|++|.+.+....
T Consensus 162 DrTVKVWslgs~~~n----------------------------------------------------------------- 176 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPN----------------------------------------------------------------- 176 (794)
T ss_pred cccEEEEEcCCCCCc-----------------------------------------------------------------
Confidence 999999987654333
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
..+.+|...|+|++|-+ |-.||++|++|.++++||.++..|+++++||...|+.+.|+|.=..+
T Consensus 177 --------------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 177 --------------FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred --------------eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 33446667777887776 44699999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
++||.||+++||+..+.+...++.-.-.+|++++-.+.++.++.|...|.+.+
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999998888887766788999998888888888888887755
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-36 Score=280.53 Aligned_cols=309 Identities=24% Similarity=0.422 Sum_probs=253.5
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
++.-+..|..++|+|...++.++-..|.|++||..-+..+..+..|.++|..++|+|++..+++|+.|-+|++|+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456678899999999999999999999999999888888899999999999999999999999999999999999887
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCe
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCT 262 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~ 262 (473)
++. .+.||-+.|..+.|++.. .+++++|.|.+|+||+..+++|+..+.||+..|.|.+|.| +..+++++-|.+
T Consensus 85 clf-tL~GHlDYVRt~~FHhey-----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 85 CLF-TLLGHLDYVRTVFFHHEY-----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ehh-hhccccceeEEeeccCCC-----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 764 578999999999988743 4899999999999999999999999999999999999999 568999999999
Q ss_pred EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (473)
Q Consensus 263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 342 (473)
||+||+..-+.- ... |. +++ +.+ .+.....=+-|+.|-
T Consensus 159 VRVWDisGLRkk-~~~------------pg------~~e---------~~~-----------~~~~~~~dLfg~~Da--- 196 (1202)
T KOG0292|consen 159 VRVWDISGLRKK-NKA------------PG------SLE---------DQM-----------RGQQGNSDLFGQTDA--- 196 (1202)
T ss_pred EEEEeecchhcc-CCC------------CC------Cch---------hhh-----------hccccchhhcCCcCe---
Confidence 999997532211 000 00 000 000 000000001111221
Q ss_pred EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
..+..+.||...|+-++|+|.-.+|++|++|+.|++|.....+ .+.+.+||.+.|+++-|+|...+++|.
T Consensus 197 --------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 197 --------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred --------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 2345678999999999999999999999999999999887544 356789999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
|.|++|+|||+...+..++++-..++-+.++-+|..+.+|.|...|.+
T Consensus 269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 999999999999888888887777889999999999987777665544
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.9e-34 Score=293.75 Aligned_cols=284 Identities=19% Similarity=0.378 Sum_probs=233.7
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeE
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGEL 174 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i 174 (473)
+.+|...|.+++|+|+|++||+|+.|+.|+|||.... .+...+. +...+.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1222233 345799999987 47899999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CC-
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG- 252 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~- 252 (473)
++||+.+++... .+.+|...|.++.|+|. ++..|++|+.|++|++||++++.++..+..+ ..+.++.|.+ ++
T Consensus 558 ~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 558 QVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred EEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 999998876543 46789999999999863 3458999999999999999999888887755 5789999954 45
Q ss_pred eEEEeecCCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 253 VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
.+++|+.|+.|++||+++++ .+..+.+|...|..+.+.+ ...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~~ 674 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SST 674 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CCE
Confidence 68899999999999998765 4567778888888887642 235
Q ss_pred EEEecCCceEEEEeCCCC-----CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe--------
Q 011978 332 LVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-------- 398 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-------- 398 (473)
+++++.|+++++||+... ..+...+.+|...+.+++|+|++++||+|+.|+.|++|+......+..+
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 889999999999998642 2345567889999999999999999999999999999998765433222
Q ss_pred -----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 399 -----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 399 -----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999986
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-36 Score=254.23 Aligned_cols=265 Identities=27% Similarity=0.534 Sum_probs=223.6
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
..+.+.++||++.|.+++|+..|++||+++.|-.+++||..+ .+++....+|+..|.+++|-|.|.+|++++.|.+|+.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 346788999999999999999999999999999999999976 4556667799999999999999999999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s 256 (473)
|+..+|-+.. .+.+|..+|.-+.. +.++..+++|+.|.++++|=+.++.|...+.+|..+|.|++|.+... ++
T Consensus 220 We~~tg~cv~-t~~~h~ewvr~v~v-----~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~ 292 (406)
T KOG0295|consen 220 WECDTGYCVK-TFPGHSEWVRMVRV-----NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP 292 (406)
T ss_pred EecccceeEE-eccCchHhEEEEEe-----cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc
Confidence 9999998765 57899998887764 44788999999999999999999999999999999999999976532 11
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
...+. ++. ......+.+++
T Consensus 293 ~i~~a--------t~~-----------------------------------------------------~~~~~~l~s~S 311 (406)
T KOG0295|consen 293 SISEA--------TGS-----------------------------------------------------TNGGQVLGSGS 311 (406)
T ss_pred chhhc--------cCC-----------------------------------------------------CCCccEEEeec
Confidence 10000 000 00012466777
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL 416 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 416 (473)
.|++|++||+..+ .....+.+|..+|..++|+|.|+||+++.+|+++++||++++++...+..|...|+++.|+.+-.+
T Consensus 312 rDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY 390 (406)
T ss_pred ccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence 7777777776654 344567788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEC
Q 011978 417 LLSGSKDSTLKVWDI 431 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~ 431 (473)
+++|+-|.++++|..
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999964
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=256.12 Aligned_cols=323 Identities=20% Similarity=0.330 Sum_probs=256.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
+..+.-..-+|.+..|-+..+++++|+.|..||||+.++...+..+..|.+.|.|++.+|.-.++++++.|-+|++||++
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 34444456688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEEe
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTG 257 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~ 257 (473)
.+-...+.+.||...|..++|+|. +.+.|++++-|++|++|.+....+..++.||...|.|+.+-+.| +|++|
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPk----D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPK----DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCC----CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 876667789999999999999995 44689999999999999999999999999999999999997665 89999
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|.++++||.++..+++++.+|.+.|..+.++|..+ .+++|+.
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp------------------------------------iiisgsE 247 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP------------------------------------IIISGSE 247 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEEEecCCCc------------------------------------EEEEecC
Confidence 9999999999999999999999999999999988754 4899999
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC----------CCceEE-----------
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT----------TGKFVA----------- 396 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~----------~~~~~~----------- 396 (473)
||+++||....-+.... +.-.-..++|++-.+.++.++.|.+.|.|.+= +- +|+.+.
T Consensus 248 DGTvriWhs~Ty~lE~t-Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-lgreeP~vsMd~~gKIiwa~~~ei~~~~~ 325 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKT-LNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-LGREEPAVSMDSNGKIIWAVHSEIQAVNL 325 (794)
T ss_pred CccEEEecCcceehhhh-hhcCCceEEEEeecCCCCeEEEeccCCcEEEE-ccCCCCceeecCCccEEEEcCceeeeeec
Confidence 99999998654433322 22234579999999988889999888766542 11 111110
Q ss_pred -EeeCC----c-----------c----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC
Q 011978 397 -VFRGH----V-----------G----PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 397 -~~~~h----~-----------~----~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~ 456 (473)
..... . + ....++-||+|+++++|+ ||.-.||..-..+.. .-++-....|++|.
T Consensus 326 ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~RnK-----~fG~~~eFvw~~ds 399 (794)
T KOG0276|consen 326 KSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRNK-----AFGSGLEFVWAADS 399 (794)
T ss_pred eeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhhc-----ccccceeEEEcCCC
Confidence 00000 0 0 013456789999887765 888888865332221 12233456677776
Q ss_pred CEEEEEeCCCcEEec
Q 011978 457 EKVASGGKDRVLKLW 471 (473)
Q Consensus 457 ~~l~s~~~D~~i~~w 471 (473)
+.++.-.+++.|+++
T Consensus 400 ne~avRes~~~vki~ 414 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF 414 (794)
T ss_pred CeEEEEecCCceEEE
Confidence 667777666766665
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=240.38 Aligned_cols=291 Identities=20% Similarity=0.338 Sum_probs=239.7
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
...++.||.+.|.++.|+.||.+||||..+|.|+||+..++.....+...-..+.=|.|+|-+..|++|+.||.+-.|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 55678999999999999999999999999999999999999877777655667888999999999999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC-eEEEe
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~s~ 257 (473)
.++ ...+.+.||..++++-.|.| ++++++++..||+|++||..++..+..+.+- ....+|+.++..+ .+++|
T Consensus 178 p~~-~~~kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 178 PSQ-ALCKVMSGHNSPCTCGEFIP-----DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred CCc-ceeeEecCCCCCcccccccC-----CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 875 34457899999998877766 6889999999999999999999888776532 3356677777766 57789
Q ss_pred ecCCeEEEEECCCCceeeeeec--------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 258 SQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
..++.+++-...+|+.+....+ +...+.++.+.+.. ..-
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---------------------------------s~l 298 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---------------------------------SKL 298 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---------------------------------ccc
Confidence 9999999999888887765542 11122222111100 011
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
...++|+-||+|.|||..... ....-.|...|..+.|-+ ..+|++++.||.|+.||.++|+++..+.||..+|.+++
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA 375 (399)
T ss_pred chhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE
Confidence 246889999999999986543 233456788899999998 78999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
++|+.++++++|.|++.+||++.
T Consensus 376 ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999864
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=246.45 Aligned_cols=284 Identities=28% Similarity=0.432 Sum_probs=236.9
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--------cCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
|...-+.|..|||||++|++|+-||.|.+||..+++....+ --+.++|.|+.||.|...|++|+.||+|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 55667889999999999999999999999999887643322 2367899999999999999999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s 256 (473)
.+++|.++...-.+|++.|+++.|+. ++..+++++.|.++++.-+.+|+++..+.||...|+.+.|.+|| .+++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999998887789999999999875 56789999999999999999999999999999999999999998 6999
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
++.||+|++|+..+..++.+++..+.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~------------------------------------------------------ 391 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGT------------------------------------------------------ 391 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCC------------------------------------------------------
Confidence 99999999999998888776653211
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEec
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSA 412 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp 412 (473)
...|+++-.-| +...++.+...++|++-++. |+.+..|.. ..+...+.+.||
T Consensus 392 -----------------------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 392 -----------------------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred -----------------------cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC
Confidence 11222332223 33455566666677777653 555655532 123455667899
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|.++.+.+.|+.++.|...+|++..++.-|...+..+.-+|..+.||+=+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=255.19 Aligned_cols=355 Identities=25% Similarity=0.376 Sum_probs=268.2
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
-...|+|+.-+|+..+||.|..||.|+||+..++.....+.+|...|+++.|...|..|++|+.|+.|.+||+-... ..
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl 142 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GL 142 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-ee
Confidence 34589999999999999999999999999999888889999999999999999999999999999999999986433 22
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
..+.||+..|+..-|.. +...+++.+.|+.+++||+.+..|..+.-.|...|+.+++.+ ..+++++.|+.+++|
T Consensus 143 ~rL~GHkd~iT~~~F~~-----~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~ 216 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLN-----GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVW 216 (888)
T ss_pred EEeecchHHHhHHhccC-----CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEE
Confidence 45789999988876653 346889999999999999999999999999999999999987 578999999999999
Q ss_pred ECCCC-------c-----eeeee--eccCceEEEEEecccceeeeccccCCCc--ccCCHHHHHHH--------------
Q 011978 267 ETTQG-------K-----LIREL--KGHGHWVNSLALSTEYALRTGAFDHTGK--QYSSPEEMKKA-------------- 316 (473)
Q Consensus 267 d~~~~-------~-----~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 316 (473)
++... . ...++ ++.+..++-+.-..+..+.+...|.... ...+.++....
T Consensus 217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t 296 (888)
T KOG0306|consen 217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAET 296 (888)
T ss_pred EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccc
Confidence 98211 0 00111 1112233322222222222222222111 11112111100
Q ss_pred -------------HHhhhhcc------------cCCC-CceEEEecCCceEEEEeCCCCCCC--------eeeecCcccc
Q 011978 317 -------------ALERYNKI------------KGNA-PERLVSGSDDFTMFLWEPAVSKQP--------KTRMTGHQQL 362 (473)
Q Consensus 317 -------------~~~~~~~~------------~~~~-~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~ 362 (473)
.+.++..+ .+.. ...++. -.++++.++.+...... .....+|...
T Consensus 297 ~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~d 375 (888)
T KOG0306|consen 297 EENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSD 375 (888)
T ss_pred cccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhh
Confidence 00111111 1111 112332 55667777765542211 2356789999
Q ss_pred eeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 442 (473)
|+++++|.+...+++|+. +.+++|+..+.+++.++.. +-+.+..|-|.++++++|...|.+.+||+.+.....+++.
T Consensus 376 VRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred eeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc
Confidence 999999999998888865 5799999999999999873 4889999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 443 HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 443 h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.+.|+.++.+||++.+++||.|++|++|.
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 999999999999999999999999999996
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=229.74 Aligned_cols=281 Identities=23% Similarity=0.428 Sum_probs=228.3
Q ss_pred EEEEECCC--CCe-EEEE-----eCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCC
Q 011978 112 LSVAFSPD--GRQ-LASG-----SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 112 ~~~~~sp~--~~~-lat~-----s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~ 180 (473)
.++.|||- +++ +|++ .+.|.+.|-++...+.+..+. .-.+.+..++|+++ ...+++++.||.+++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 35778884 333 2333 257889999886444343332 34678999999985 4678899999999999965
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEee
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGS 258 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~ 258 (473)
........++.|...|.++.|++.. ...++++|.|++||+|+....+.+.++.||...|....|+|. +.+++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~----r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVR----RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCcchhHHHhhhhheEEecccccc----ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 4444445678999999999998853 467899999999999999999999999999999999999974 4788999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|+++++||++.......+..|...+.+..++.- ....+++|+.|
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd 212 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD 212 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence 9999999998864333337777767777665431 24468999999
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEec-CCC
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSA-DSR 415 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp-~g~ 415 (473)
+.|+.||++..+.+...+.+|.-.|+.+.|||. ..+||+++.|-++|+||...+ .++.++.-|+..|..+.||+ ++.
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG 292 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence 999999999999999999999999999999995 578999999999999999854 45667778999999999998 667
Q ss_pred EEEEEeCCCcEEEEEC
Q 011978 416 LLLSGSKDSTLKVWDI 431 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~ 431 (473)
++|+++.|+.++||+.
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999984
No 45
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=237.77 Aligned_cols=412 Identities=20% Similarity=0.302 Sum_probs=293.1
Q ss_pred HHHHHHhcCCCCcceEEEecCeeecccHHhHHHhcCCCcccEEEEEEE-eceeEEEeecccccccccCCcccEEEEEECC
Q 011978 40 QIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQ-PQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118 (473)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp 118 (473)
..-+.++.+..++.+.+.++|...+.++-- . +.-.+.|. +.-.......++..+.+.||++.|.|++.+|
T Consensus 44 ~~d~~~P~~kl~LewvygYRG~dcR~Nly~--l-------ptgE~vyfvA~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHP 114 (626)
T KOG2106|consen 44 MADVELPTEKLKLEWVYGYRGVDCRNNLYL--L-------PTGELVYFVAAVGVLYNWEERSQRHYLGHNDDIKCMAVHP 114 (626)
T ss_pred hhhccCcccCceeEEEEeecceeeeceeEE--c-------cCccEEEEeccEEEEEeehhhhcccccCCCCceEEEeecC
Confidence 344555666677888999999988766521 1 11123332 3222223333445667889999999999999
Q ss_pred CCCeEEEEeCCC--------eEEEEeCCCCceeEEEcCCCCCEEEEEECCC--CCeEEEE--ecCCeEEEeeCCCCcccc
Q 011978 119 DGRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSG--SKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 119 ~~~~lat~s~d~--------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~--~~dg~i~iwd~~~~~~~~ 186 (473)
|.-++|+|..-| .+||||..+-.-+..+......|.|++||+- |.+|... +.+..+.+||++.+....
T Consensus 115 dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~ 194 (626)
T KOG2106|consen 115 DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG 194 (626)
T ss_pred CceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC
Confidence 999999886554 5999997766555555566788999999983 4555554 334568999998776543
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE---ecCc-cccEEEEEecCCCeEEEeecCCe
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LSGH-TLAVTCVKWGGDGVIYTGSQDCT 262 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~~~~~~~~~l~s~~~d~~ 262 (473)
.....+..|....|+|... +.+++++. +.+.+|+.+.+..... +.++ ...|.|++|.++|.+++|..+|.
T Consensus 195 -~vk~sne~v~~a~FHPtd~----nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~ 268 (626)
T KOG2106|consen 195 -PVKTSNEVVFLATFHPTDP----NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGN 268 (626)
T ss_pred -cceeccceEEEEEeccCCC----cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCce
Confidence 3444566778889999643 46667665 8999999988765432 3332 35799999999999999999999
Q ss_pred EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC----------CHHHHHHHH---------------
Q 011978 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS----------SPEEMKKAA--------------- 317 (473)
Q Consensus 263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------------- 317 (473)
|.+|+..+.+..++...|...|.++....+..+..+..|.....+. .|++.-...
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr 348 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR 348 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence 9999999888888888999999999888777666654442211111 111100000
Q ss_pred ---H-----hhhhc------------ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978 318 ---L-----ERYNK------------IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 318 ---~-----~~~~~------------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
+ ..+.. ......+.+++++.|+.+.+|+ ..+....+.. .+...|++|+|.| .+|.
T Consensus 349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--EDPAECADFHPSG-VVAV 423 (626)
T ss_pred ceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--cCceeEeeccCcc-eEEE
Confidence 0 00000 0112235688999999999998 2222223332 3567899999999 9999
Q ss_pred EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecc-cccCCCEEEEEEeeC
Q 011978 378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDL-PGHADEVFAVDWSPD 455 (473)
Q Consensus 378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~-~~h~~~i~~l~~s~d 455 (473)
|...|...+.|.++...+..-.. ..+++.++|+|+|.+||.||.|+.|+||-+..... .... .-|...|+.|+||+|
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 99999999999999766666555 88999999999999999999999999999865332 2211 113378999999999
Q ss_pred CCEEEEEeCCCcEEecc
Q 011978 456 GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 456 ~~~l~s~~~D~~i~~w~ 472 (473)
+++|.+.+.|-.|..|.
T Consensus 503 s~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEeccCceEEEEEc
Confidence 99999999999999994
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=240.53 Aligned_cols=242 Identities=26% Similarity=0.494 Sum_probs=223.5
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~ 265 (473)
..+.+|.++|.++++.|. ...|++|+.|++++|||+.+++...++.||...|..+++++.. ++++++.|+.|+-
T Consensus 145 rVi~gHlgWVr~vavdP~-----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPG-----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCC-----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 357899999999999884 4699999999999999999999999999999999999998765 7999999999999
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
||++..+.++...+|-..|.+++++|. .+.+++|+.|.++++||
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPT------------------------------------ldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPT------------------------------------LDVLVTGGRDSTIRVWD 263 (460)
T ss_pred EechhhhhHHHhccccceeEEEecccc------------------------------------ceeEEecCCcceEEEee
Confidence 999999999999999999999998874 34699999999999999
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
++.. .....+.||...|.++.+.|-...+++||.|++|++||+..|+...++..|.-.|.+++.+|....+|++|.|.
T Consensus 264 iRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn- 341 (460)
T KOG0285|consen 264 IRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN- 341 (460)
T ss_pred eccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-
Confidence 8754 45678899999999999999888899999999999999999999999999999999999999999999999885
Q ss_pred EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+-|++..+..++.+.+|..-|++++...|| ++++|+..|.|.+|+
T Consensus 342 ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 8999999999999999999999999988886 789999999999996
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=234.79 Aligned_cols=247 Identities=26% Similarity=0.464 Sum_probs=209.3
Q ss_pred eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
++..+.+|++.|..+.|+|+|..|++|+.|..|.+|+......-.-.+.+|++.|..+.|.+ ++..+++++.|.+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT 113 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence 44557899999999999999999999999999999997554433445779999999998876 5678999999999
Q ss_pred EEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
++.||+++++++..+++|...|.++.-..-| .+.+++.|+++++||.++...++++.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------------- 172 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------------- 172 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------------------
Confidence 9999999999999999999999988754434 46688899999999988654433221
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs 379 (473)
....++++.|..++..+.+|+
T Consensus 173 -----------------------------------------------------------~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 173 -----------------------------------------------------------NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred -----------------------------------------------------------cceeEEEEEecccccceeecc
Confidence 123467889999999999999
Q ss_pred CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeecccccCC----CEEEEE
Q 011978 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ----KLKQDLPGHAD----EVFAVD 451 (473)
Q Consensus 380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~h~~----~i~~l~ 451 (473)
-|+.|++||++....+.+++||..+|+.+..+|+|.++.+-+.|.++++||++.. +.+..+.||.. ....++
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999999999999999999999999999999999999999999999853 33555555542 456789
Q ss_pred EeeCCCEEEEEeCCCcEEeccC
Q 011978 452 WSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 452 ~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
|||+++++..|+.|+.+.+|+.
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred ccCCCCccccccccceEEEeec
Confidence 9999999999999999999973
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-35 Score=248.28 Aligned_cols=228 Identities=31% Similarity=0.584 Sum_probs=204.5
Q ss_pred CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCc
Q 011978 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272 (473)
Q Consensus 193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 272 (473)
.+.|.++.+. ...+++|..|.+|+|||..+..|...+.||++.|.|+.|.. ..+++|+.|.+|++||+.+|+
T Consensus 197 skgVYClQYD-------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD-------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEec-------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCc
Confidence 4557777653 36799999999999999999999999999999999999974 389999999999999999999
Q ss_pred eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-
Q 011978 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ- 351 (473)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~- 351 (473)
.++++-+|...|..+.++.. .+++++.|.++.+||+.....
T Consensus 269 ~l~tlihHceaVLhlrf~ng--------------------------------------~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG--------------------------------------YMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC--------------------------------------EEEEecCCceeEEEeccCchHH
Confidence 99999999999988887643 588999999999999865442
Q ss_pred -CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 352 -PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 352 -~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
....+.||...|+.+.|+ .+|++++|.|++|++|+..+++++.++.+|...|-|+.+ .|+++++||.|.+|++||
T Consensus 311 t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEe
Confidence 234578999999999996 459999999999999999999999999999999999887 589999999999999999
Q ss_pred CCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 431 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+..|..+..+.||+.-|.++.|. .+.++||+.||+|++|+
T Consensus 387 i~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence 99999999999999999999995 68999999999999996
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.7e-35 Score=251.14 Aligned_cols=246 Identities=24% Similarity=0.417 Sum_probs=215.9
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
.+..|.++|.++.|+++|.++++|+.+|.|++|+.+-.........|...|.+++|||+...+++++.||+|+|||....
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 35789999999999999999999999999999997644322222345588999999999999999999999999998776
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~ 261 (473)
+... .+.+|.-.|.++.|+|. ...++++|.|..|++||.+++.|+.++.+|...|..+.|++++ .|++++.|.
T Consensus 213 kee~-vL~GHgwdVksvdWHP~-----kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 213 KEER-VLRGHGWDVKSVDWHPT-----KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred chhh-eeccCCCCcceeccCCc-----cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6543 46999999999999994 3589999999999999999999999999999999999999887 799999999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.++++|+++-+.+..+++|...+.++.++|-. ...|.+|+.|+.+
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~-----------------------------------~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN-----------------------------------ESLFTSGGSDGSV 331 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeecccccc-----------------------------------ccceeeccCCCce
Confidence 99999999888888899999999999887742 3468899999999
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
..|...........-.+|...|++++|+|-|..||+|+.|+++++|..
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999987555555566789999999999999999999999999999964
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=264.27 Aligned_cols=285 Identities=33% Similarity=0.605 Sum_probs=250.3
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
|...+.+..|+ +.++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..|++|+.|.++++||..+|.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 67899999999999999999887777 9999999999999876789999999999999999999876
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~ 265 (473)
. .+.+|...+.++...+ ..+++|+.|.+|++|++.+++++..+.+|..+|.++..+ +..+++|+.|++|++
T Consensus 285 ~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 285 H-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKV 355 (537)
T ss_pred E-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEE
Confidence 5 4679999999887654 367888999999999999999999999999999999998 668999999999999
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
||..++++++.+.+|..+|.++.+... ..+++|+.|++|++||
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVWD 398 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEeec
Confidence 999999999999999999999876531 3689999999999999
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCCEEEEEeCCC
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSRLLLSGSKDS 424 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg 424 (473)
+....+....+.+|...+.++.+ .+++|++++.|++|++||..+++++.++.+ |.+.|..+++. ...+++++.||
T Consensus 399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~ 474 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG 474 (537)
T ss_pred CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence 98764566678888888866554 578999999999999999999999999998 77889998886 45788899999
Q ss_pred cEEEEECCCCceeeccccc
Q 011978 425 TLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 425 ~i~iwd~~~~~~~~~~~~h 443 (473)
++++||+++++....+-.+
T Consensus 475 ~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 475 SVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eeEEEecccCchhhhhhhc
Confidence 9999999998887765333
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=231.21 Aligned_cols=286 Identities=24% Similarity=0.384 Sum_probs=241.3
Q ss_pred ccCCcccEEEEEEC---CCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 104 IAGHTEAVLSVAFS---PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 104 ~~gh~~~V~~~~~s---p~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
..||+.+|..++|| |+|-+|++++.|+.-.+-+-+++.=+..+.+|.+.|++...+.+....++++.|-+-++||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 46899999999998 578899999999999998888888888999999999999999988888999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEEEec-CCCeEEEee
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWG-GDGVIYTGS 258 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~-~~~~l~s~~ 258 (473)
+|..+. ...|+..|..++|.. +..++++|+.+..+|++|+...+ ....+.+|...|..+.|. .|..+++++
T Consensus 90 tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 90 TGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 987654 245777788888764 66789999999999999987643 456788999999999996 456789999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|++||+||.++++.++++... .+|.++.++++ ..+++....
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~d-------------------------------------G~ilTia~g 204 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQD-------------------------------------GRILTIAYG 204 (334)
T ss_pred cCCceEEEEeccCcEEEEEecC-CCCcceeeccC-------------------------------------CCEEEEecC
Confidence 9999999999999998887642 34555555443 357778888
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l 417 (473)
+.|.+||...-...+ ...-+..|.+..++|+...+++|+.|..++.||+.+|+.+..+ ++|.++|.||.|+|||...
T Consensus 205 ssV~Fwdaksf~~lK--s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLK--SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred ceeEEecccccccee--eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 899999975433222 2223456888999999999999999999999999999999887 8999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCce
Q 011978 418 LSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~ 436 (473)
|+||.||+|+||....++.
T Consensus 283 AsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eccCCCceEEEEEecCCCc
Confidence 9999999999999876654
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=246.10 Aligned_cols=288 Identities=22% Similarity=0.407 Sum_probs=234.5
Q ss_pred cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
+..+...+..|.+.|..+.|-++...|++|+.|..|++|++...+ ....+.+..+.|+++.|.++++++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 345666778899999999999999999999999999999987765 345566778889999999999999999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l 254 (473)
++|+....+.. ..+.+|.+.|+++.|...+ .+.++|+.|+++++||+....|..+...- ..+..+..+ ...+
T Consensus 244 r~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-~~~~ 315 (459)
T KOG0288|consen 244 RLWNVDSLRLR-HTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-ISDV 315 (459)
T ss_pred eeeeccchhhh-hhhcccccceeeehhhccc-----cceeeccccchhhhhhhhhhheecccccc-ccccceEec-ceee
Confidence 99999887754 4688999999998876532 35899999999999999988877654321 122233322 3356
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++|..|++|++||.+..........
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~------------------------------------------------------- 340 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPL------------------------------------------------------- 340 (459)
T ss_pred eecccccceEEEeccCCceeeEeec-------------------------------------------------------
Confidence 7788888888888776654433221
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC----ccCEEEEEE
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH----VGPVYQISW 410 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~ 410 (473)
.+.|+++..+++|..|.+.+.|.++.+.|+++.+....+.+. ..-.+.+.|
T Consensus 341 -------------------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 341 -------------------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred -------------------------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 135888999999999999999999999999998877776542 123789999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceeecccccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
||++.|+|+||.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999999998777665443 599999999999999999999999995
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-31 Score=223.59 Aligned_cols=282 Identities=23% Similarity=0.361 Sum_probs=227.4
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCcc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKP 184 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~ 184 (473)
-...|+++.|+++|.+|++++.|.+++|||..+++++..+..++..+..+.|......++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4678999999999999999999999999999999998888888889999999887777777776 88999999998887
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC-eE
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TI 263 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-~i 263 (473)
++ .+.||.+.|+.+..+|.. +.|++++-|++|++||++..+|...+.-.. -..++|+|+|++++.+..+ .|
T Consensus 93 lR-YF~GH~~~V~sL~~sP~~-----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 93 LR-YFPGHKKRVNSLSVSPKD-----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EE-EcCCCCceEEEEEecCCC-----CeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeE
Confidence 65 689999999999988853 689999999999999999888876664333 2347899999866655544 99
Q ss_pred EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 343 (473)
++||++.-.. + +-.. +.
T Consensus 165 kLyD~Rs~dk-----g---PF~t----------------------------------------------f~--------- 181 (311)
T KOG1446|consen 165 KLYDLRSFDK-----G---PFTT----------------------------------------------FS--------- 181 (311)
T ss_pred EEEEecccCC-----C---Ccee----------------------------------------------Ec---------
Confidence 9999864210 0 0000 00
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE---EEEEEecCCCEEEEE
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV---YQISWSADSRLLLSG 420 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v---~~v~~sp~g~~l~s~ 420 (473)
+ ..+.....+.+.|||||++|+.+...+.+++.|.-+|.....+.++...- .+..|+||++++.+|
T Consensus 182 --i---------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 182 --I---------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred --c---------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 0 00112346779999999999999999999999999999988888765432 578899999999999
Q ss_pred eCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.||+|.+|++++++....+.+ +...+.++.|+|.-- .-++.+..+.+|.
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~--mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA--MFVSASSNLVFWL 301 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee--eeeecCceEEEEe
Confidence 9999999999999998888877 678899999999654 4455556788884
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-32 Score=222.39 Aligned_cols=283 Identities=22% Similarity=0.353 Sum_probs=228.0
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
.+.||..+++.+.++.+|++|++++.|.++.||=..+++.+....+|.+.|+|++.+-+.+++++|+.|.++++||.++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECC-------CCeEEEEecCccccEEEEEecC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVS-------LRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~-------~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
+++... .-...|..+.|++ .+++++.+.. .+.|.++|++ ...+...+..+...++.+-|.+
T Consensus 85 k~la~~--k~~~~Vk~~~F~~-----~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 85 KQLATW--KTNSPVKRVDFSF-----GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred cEEEEe--ecCCeeEEEeecc-----CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 876432 2344566676665 4455555433 4678999987 3455666677778889999987
Q ss_pred CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 251 ~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
-+ .|++|..||.|..||+++|+....
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~----------------------------------------------------- 184 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVD----------------------------------------------------- 184 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeee-----------------------------------------------------
Confidence 65 688999999999999988754321
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
....|...|+.++++||..++++||.|.+-++||..+.+++.++.- ..||++.+
T Consensus 185 -------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 185 -------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA 238 (327)
T ss_pred -------------------------chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence 0113455788999999999999999999999999999999999874 56999999
Q ss_pred EecCCCEEEEEeCCCcEEE--EECCCC------------ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 410 WSADSRLLLSGSKDSTLKV--WDIRTQ------------KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~i--wd~~~~------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
++|...+++.|+.....-+ =+.+.+ +.+..++||-++|++++|+|||+..+||+.||.|++.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9997777766654322211 112223 2345678999999999999999999999999999985
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=261.76 Aligned_cols=240 Identities=33% Similarity=0.619 Sum_probs=211.4
Q ss_pred CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
+...|.++.|+++|+.+++++.++.+++|+..+++ .....+.+|...|..+.|+| ++..+++++.|+++++||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-----d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-----DGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-----CCcEEEEecCCceEEEeec
Confidence 36789999999999999999999999999997666 12234589999999999988 5569999999999999999
Q ss_pred -CCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978 228 -SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 228 -~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
..+.++.++.+|...|++++|++++ .+++|+.|++|++||++++++.+.+.
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------------------------- 285 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------------------------- 285 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------------
Confidence 5568999999999999999999988 68899999999999999877665443
Q ss_pred ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEE
Q 011978 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~ 385 (473)
+|.+.|++++|++++++|++++.|+.|+
T Consensus 286 ----------------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 286 ----------------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred ----------------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 4556788899999999999999999999
Q ss_pred EEeCCCCc--eEEEeeCCccC--EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC---EEEEEEeeCCCE
Q 011978 386 LWNGTTGK--FVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE---VFAVDWSPDGEK 458 (473)
Q Consensus 386 lwd~~~~~--~~~~~~~h~~~--v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~---i~~l~~s~d~~~ 458 (473)
+||..++. ++..+.++... ++.+.|+|++.++++++.|+.+++||+..++......+|... +++...++++++
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99999998 56777776655 999999999999999999999999999999988888888764 445566889999
Q ss_pred EEEEeCCCcEEecc
Q 011978 459 VASGGKDRVLKLWM 472 (473)
Q Consensus 459 l~s~~~D~~i~~w~ 472 (473)
+++|+.|+.|.+|.
T Consensus 394 i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWD 407 (456)
T ss_pred EEEEeCCceEEEEe
Confidence 99999999999996
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=239.17 Aligned_cols=281 Identities=20% Similarity=0.360 Sum_probs=224.5
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
+..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+....+...+..|.+.|..+++.. ..+++++.|++|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999987 7799999999999999999989999999999999999986 67899999999999987
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEe
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTG 257 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~ 257 (473)
+.. .... +.+ +..+.++. .......|+|||. .|.|||......+..+.-....|.++.|++.. +|+++
T Consensus 137 ~~~-p~~t-ilg-~s~~~gId-----h~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 137 DGP-PLHT-ILG-KSVYLGID-----HHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred cCC-ccee-eec-cccccccc-----cccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 542 1111 111 11122222 1223356888875 58999998888887777777789999999864 67888
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|+.|.+||++++..++.+. ..
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-------------------------------------------------------~~-- 229 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-------------------------------------------------------LT-- 229 (433)
T ss_pred ccCCceEEEecccCCccceee-------------------------------------------------------ee--
Confidence 899999999999877654321 00
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRL 416 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~ 416 (473)
-.-+.|+|+|.+-.+++|+.|..++.||.+.. .++..+++|.+.|.+|.|||.|+-
T Consensus 230 -----------------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 230 -----------------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred -----------------------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 11356899998888999999999999999865 567889999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 417 LLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
+++||.|.+|+||.++.+......... -..|.++.||-|.++++|||.|+.|++|.+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 999999999999999876543332111 135899999999999999999999999975
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-32 Score=220.86 Aligned_cols=279 Identities=24% Similarity=0.388 Sum_probs=226.2
Q ss_pred EEEEECC--CCCeEEEE------ecCCeEEEeeCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 154 LCIAWSA--DGKHLVSG------SKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 154 ~~l~~s~--dg~~l~s~------~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
.++.||| ++++.++. ...|++.|.++..++.+.. .-..-.+.+..++|++.+- +.+++++.||++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e----~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE----NQVIAASGDGSLRL 87 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc----ceEEEEecCceEEE
Confidence 4678888 34333322 2468899999864332221 1122345688899988543 47899999999999
Q ss_pred EECCC-CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 225 WDVSL-RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 225 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
||+.. .+.+..++.|...|.++.|+.-. .+++++.|++||+|+...++.+.++.+|...|....++|.
T Consensus 88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~--------- 158 (311)
T KOG0277|consen 88 FDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH--------- 158 (311)
T ss_pred eccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC---------
Confidence 99654 35677888999999999998643 5788899999999999999999999999999999988875
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEEC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF 380 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~ 380 (473)
.++.++++|.|+++++||++...+... +..|...+.+..|+. +.++|+||+.
T Consensus 159 --------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 159 --------------------------IPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred --------------------------CCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCC
Confidence 356799999999999999877654444 778888999999997 7789999999
Q ss_pred CCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeC-C
Q 011978 381 DKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPD-G 456 (473)
Q Consensus 381 d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d-~ 456 (473)
|+.||.||++.. .++..+.+|.-.|..|+|||.. ..||++|.|=+++|||...+ ..+.+..-|...+..++||+- .
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDP 291 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccC
Confidence 999999999875 4678889999999999999964 58999999999999999754 345667778889999999864 5
Q ss_pred CEEEEEeCCCcEEecc
Q 011978 457 EKVASGGKDRVLKLWM 472 (473)
Q Consensus 457 ~~l~s~~~D~~i~~w~ 472 (473)
.++|+++.|..++||+
T Consensus 292 ~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWN 307 (311)
T ss_pred ceeeecccccceeeec
Confidence 6899999999999997
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=215.60 Aligned_cols=240 Identities=23% Similarity=0.374 Sum_probs=211.0
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w 266 (473)
.+.++.+.|.++.|+. ++++.++|+.|++|++|+...+.++.++.||...|..++.+.|+ .+++|+.|+.+.+|
T Consensus 12 ~l~~~qgaV~avryN~-----dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNV-----DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEcc-----CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 4567888888887654 77899999999999999999999999999999999999988766 69999999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
|+.+|+.++.+.+|...|+.+.++++ ...+++|+.|.++++||.
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNee------------------------------------sSVv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEE------------------------------------SSVVASGSFDSSVRLWDC 130 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCc------------------------------------ceEEEeccccceeEEEEc
Confidence 99999999999999999999998765 235899999999999998
Q ss_pred CCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 347 AVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 347 ~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
+... .|...+....+.|.++.++ +..|++||.||++|.||++.|....-+-+| ||++++|++|++....++.|++
T Consensus 131 RS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred ccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccce
Confidence 6543 4555666667788888875 567999999999999999999887666555 8999999999999999999999
Q ss_pred EEEEECCCCceeecccccCCCEEEE--EEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQKLKQDLPGHADEVFAV--DWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~~~~~~~~~h~~~i~~l--~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+++.|-.++++++.+.||...-+.+ +++.....+++|++||.+.+|.
T Consensus 207 lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 207 LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred eeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 9999999999999999998876654 5667778999999999999996
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=253.86 Aligned_cols=272 Identities=31% Similarity=0.529 Sum_probs=242.5
Q ss_pred CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
+...+.+..|. +.++++++.+++|++|+..++......+.+|.+.|.++.+.. .+..+++|+.|.++++||..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-----~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-----GGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-----CCCEEEEEecCCcEEeEecC
Confidence 56678888887 568999999999999999999988877999999999998753 34689999999999999999
Q ss_pred CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
++.|...+.||...|.|+...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++....
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~----------------- 341 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE----------------- 341 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC-----------------
Confidence 9999999999999999998653 3678899999999999999999999999999999997653
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
..+++|+.|++|++||+. ..+....+.+|...|.++.+.+. ..+++|+.|++|++||
T Consensus 342 ---------------------~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 342 ---------------------PLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred ---------------------CEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence 368999999999999987 45667788899999999988766 8999999999999999
Q ss_pred CCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 389 GTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 389 ~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
++++ +++.++.+|.+.+.++.+ .+++|++++.|++|++||..+++.++.+.+ |...|..+++. ...+++++.|+
T Consensus 399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~ 474 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG 474 (537)
T ss_pred CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence 9999 999999999998876655 578999999999999999999999999988 66889888876 46889999999
Q ss_pred cEEecc
Q 011978 467 VLKLWM 472 (473)
Q Consensus 467 ~i~~w~ 472 (473)
++++|+
T Consensus 475 ~~~l~d 480 (537)
T KOG0274|consen 475 SVKLWD 480 (537)
T ss_pred eeEEEe
Confidence 999996
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-31 Score=215.70 Aligned_cols=276 Identities=25% Similarity=0.416 Sum_probs=226.4
Q ss_pred EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
..+|.+.|.+++|+.+|..|++|+.|+++.+|+++..+.. .....+|.+.|..+.|.|.+. ..|++++.|.+|++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~----d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP----DLFATASGDKTIRI 91 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC----cceEEecCCceEEE
Confidence 4578889999999999999999999999999999876432 234678999999999998653 58999999999999
Q ss_pred EECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (473)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (473)
||++.+++..........+. +.|+|+| +++.+..|..|.+.|.++.+.....+.. ..++.+.+..
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~------------ 157 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNN------------ 157 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecC------------
Confidence 99999999987765444443 5677766 6889999999999999887766543321 1122222221
Q ss_pred CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~ 383 (473)
..+.++.....|++.|-.-. .-++...+..|.....||.|+|+|+|+|+|+.|..
T Consensus 158 ------------------------~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAl 212 (313)
T KOG1407|consen 158 ------------------------SNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL 212 (313)
T ss_pred ------------------------CCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccce
Confidence 12344555556777776654 34566778899999999999999999999999999
Q ss_pred EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
+.+||++..-+++.+..+.-+|..+.||.||++||+||.|..|-|=++.+|.....++ +.++.+.|+|+|....||-+.
T Consensus 213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 9999999998999999999999999999999999999999999999999999888886 778899999999999999887
Q ss_pred CC
Q 011978 464 KD 465 (473)
Q Consensus 464 ~D 465 (473)
.|
T Consensus 292 dd 293 (313)
T KOG1407|consen 292 DD 293 (313)
T ss_pred cC
Confidence 65
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-32 Score=225.78 Aligned_cols=323 Identities=23% Similarity=0.386 Sum_probs=251.4
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
++...+.||.+.|+.++.......+.+++.|.+.+||.++++.++....+|.+.|.|+.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45678899999999999988878899999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEe--eCCC-cEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978 179 PQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (473)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~--s~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 252 (473)
..-.-.. .....+|...-. ...+ .....+..+ ..|| +| ...+..+.||...|.+..|-..|
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE-~e~s-----De~~~d~d~~~~sD~~ti-------RvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEE-EEHS-----DEHNRDTDSSEKSDGHTI-------RVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhh-hhcc-----cccccccccccccCCcee-------eeeeeeeeccccceEehhhhcCcc
Confidence 3211000 001112211000 0000 000111111 1121 22 23566788999999999997665
Q ss_pred eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
.++++++|.+..+||+++|..+..+.+|++....+..+|. ...+
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------------------------------------QrLV 329 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------------------------------------QRLV 329 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCc------------------------------------ceEE
Confidence 6999999999999999999999999999887776665543 2357
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEe
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWS 411 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~s 411 (473)
++++.|.+.++||.+...+....+.||.+.|+++.|.-+.+ +++|+.|.+|++||+++.. ++.+++- ..+++.++.+
T Consensus 330 vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs 407 (481)
T KOG0300|consen 330 VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVS 407 (481)
T ss_pred EEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEee
Confidence 89999999999999877778889999999999999997655 8899999999999998764 5666663 5689999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcee----ecccccCCCEEEEEEeeCC--CEEEEEeCCCcEEecc
Q 011978 412 ADSRLLLSGSKDSTLKVWDIRTQKLK----QDLPGHADEVFAVDWSPDG--EKVASGGKDRVLKLWM 472 (473)
Q Consensus 412 p~g~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~h~~~i~~l~~s~d~--~~l~s~~~D~~i~~w~ 472 (473)
..+..+|.--++..|++||+...++. ..-.||...|.+++|..+- .-|.++|-|..+.=|.
T Consensus 408 ~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 88888888888889999999876542 2446899999999998553 3578999999888775
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1e-31 Score=238.76 Aligned_cols=294 Identities=25% Similarity=0.413 Sum_probs=226.7
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEE-cCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
.+..++.+|+..|.++++.|.|-++++||.|.+|++||+..-. ....+ ..-...|.++.|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 3456788999999999999999999999999999999986421 11111 123346999999999999999999999
Q ss_pred EEEeeCCCCcccc-----------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEe-----
Q 011978 174 LQCWDPQTGKPSG-----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL----- 236 (473)
Q Consensus 174 i~iwd~~~~~~~~-----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~----- 236 (473)
.+++|........ ....||...+++..|+|.. ...|+|++.||++||||+...+. +..+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~----k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN----KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc----ccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 9999965432211 2357899999999999954 35899999999999999976432 2222
Q ss_pred cCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 237 SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 237 ~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
.+....++.++|++++. |++|..||.|.+|+...... + +.
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-~---------------p~----------------------- 354 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-R---------------PV----------------------- 354 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-c---------------cc-----------------------
Confidence 24455788999999984 77889999999999743110 0 00
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc--ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~ 393 (473)
+ ..-..|.. .|+||+||+||++|++-+.|+++++||++..+
T Consensus 355 -------------------------~------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 355 -------------------------M------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred -------------------------e------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 0 00112333 69999999999999999999999999998753
Q ss_pred -eEEEeeCC--ccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 394 -FVAVFRGH--VGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 394 -~~~~~~~h--~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
++.+..+- .-+-+.++|||+.++|++|.. .|++.+||..+....+.+.-....|..+.|+|.=+.|..|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 44444432 234577999999999999864 567999999998888877766788999999999999999999
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
||+++++.
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 99999874
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-31 Score=242.15 Aligned_cols=270 Identities=28% Similarity=0.552 Sum_probs=225.2
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
+.|+ ....||.| ....|++|+..++.....+..++..|+++.|+++|.+|++|..+|.|.|||..+.+........|.
T Consensus 183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 4566 34455555 445899999988875555555588999999999999999999999999999988776655444499
Q ss_pred CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC
Q 011978 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG 271 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~ 271 (473)
..|-+++|.. ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++|+.|+.+.|||....
T Consensus 261 ~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 261 SRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred ceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 9999999984 4688999999999999998776555 88999999999999987 5888999999999986321
Q ss_pred ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
.
T Consensus 334 -------------------------------------------------------------------------------~ 334 (484)
T KOG0305|consen 334 -------------------------------------------------------------------------------E 334 (484)
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred CeeeecCcccceeEEEECC-CCcEEEEEE--CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE--eCCCcE
Q 011978 352 PKTRMTGHQQLVNHVYFSP-DGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG--SKDSTL 426 (473)
Q Consensus 352 ~~~~~~~~~~~v~~v~~sp-~g~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~--s~Dg~i 426 (473)
+...+..|...|.+++|+| ...+||+|+ .|+.|++||..+|+.+..... .+.|..|.|++..+-|+++ -.++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 3344556788899999999 677899875 699999999999998877653 4579999999998766664 357789
Q ss_pred EEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 427 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.||+..+.+....+.+|..+|..+++||||..+++|+.|.++++|+
T Consensus 414 ~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 9999999999999999999999999999999999999999999996
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-30 Score=204.55 Aligned_cols=292 Identities=25% Similarity=0.375 Sum_probs=229.9
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC------------CceeE---EEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------QTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKA 171 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~------------~~~~~---~~~~~~~~v~~l~~s~dg~~l~s~~~d 171 (473)
.+..|.+++|+|.|.+.|.|+..++.||..... ..|.. ..+.|.+.|.|.+|||+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 566899999999999999999999999975421 11222 235789999999999999999999999
Q ss_pred CeEEEeeCC--CCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978 172 GELQCWDPQ--TGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (473)
Q Consensus 172 g~i~iwd~~--~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 246 (473)
++|++...+ +.... ...+.-|.+.|..++|.... ...+..+++++ .|..|.+=|...+.....+.||.+-|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 999886543 32221 12456788999999986532 23344555544 46677777888999999999999998876
Q ss_pred E-ecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 247 K-WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 247 ~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
- |+ +-.+++|+.|.+|++||++-..+++.+...-
T Consensus 190 yswn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~-------------------------------------------- 224 (350)
T KOG0641|consen 190 YSWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDF-------------------------------------------- 224 (350)
T ss_pred EEec-CcEEEccCCCceEEEEeeeccceeeeccCcc--------------------------------------------
Confidence 4 44 3478899999999999998665554332100
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v 405 (473)
.|+ . -....|.++++.|.|++|++|-.|....+||++.++.++.|..|+..|
T Consensus 225 -----------~~~----------g-------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi 276 (350)
T KOG0641|consen 225 -----------HDG----------G-------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI 276 (350)
T ss_pred -----------cCC----------C-------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce
Confidence 000 0 012458899999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 406 YQISWSADSRLLLSGSKDSTLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+|.|||.-.+|.++|.|..|++-|+... ..+.....|.+++..+.|+|..--++|.+.|+++.+|.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 99999999999999999999999998742 12334556889999999999998999999999999995
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-31 Score=232.84 Aligned_cols=276 Identities=27% Similarity=0.401 Sum_probs=229.6
Q ss_pred CcccEEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 107 HTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
....|.+++|+|...+ +|+++ .-.+.||+..+......+......|.++.|-.||++|++|+..|.|+++|..+ +.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence 3467999999997654 44443 35799999887766655666778899999999999999999999999999544 445
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeE
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTI 263 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i 263 (473)
...+.+|..++..+.|.|. +...|++|+.|+.+++||+.+......+.+|...|.|.+|.|-. .++||+.||.|
T Consensus 103 LR~~~ah~apv~~~~f~~~----d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQ----DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHhhccCceeEEEeccc----CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 5568899999999999885 45689999999999999999998877899999999999998743 68999999999
Q ss_pred EEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978 264 KVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (473)
Q Consensus 264 ~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 342 (473)
++||.+... .+.
T Consensus 179 rl~DtR~~~~~v~------------------------------------------------------------------- 191 (487)
T KOG0310|consen 179 RLWDTRSLTSRVV------------------------------------------------------------------- 191 (487)
T ss_pred EEEEeccCCceeE-------------------------------------------------------------------
Confidence 999987531 111
Q ss_pred EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
...|..+|..+.+-|.|..||+++.. .|++||+.+| +.+..+..|.-.|+|+++..++..|++||
T Consensus 192 -------------elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 192 -------------ELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred -------------EecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 12355678889999999999998754 7999999965 44555556999999999999999999999
Q ss_pred CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
-|+.|++||+.+.+....+. -.++|.+++.+||++.++.|..||.+.+
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 99999999998888887775 4678999999999999999999997653
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-30 Score=210.85 Aligned_cols=242 Identities=29% Similarity=0.546 Sum_probs=200.7
Q ss_pred eEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 143 MFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
...+++|.+.+..++|+|- |..|++|+.|+.|++|+...+.. .+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~------------------------ 51 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WT------------------------ 51 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EE------------------------
Confidence 4567789999999999997 77889999999999998653221 00
Q ss_pred EEEEECCCCeEEEEe-cCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC--ceeeeeeccCceEEEEEecccceeee
Q 011978 222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 222 i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (473)
|...+ .+|...|.+++|+|.| +|++|+.|.++.||.-..+ +++..+++|+..|.+++++++
T Consensus 52 ----------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s----- 116 (312)
T KOG0645|consen 52 ----------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS----- 116 (312)
T ss_pred ----------EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC-----
Confidence 11111 2688899999999987 5889999999999987655 577889999999999999875
Q ss_pred ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC--CCCeeeecCcccceeEEEECCCCcEE
Q 011978 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWV 375 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~g~~l 375 (473)
...|++++.|+.+-+|+.... ......+.+|...|..+.|+|...+|
T Consensus 117 -------------------------------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 117 -------------------------------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred -------------------------------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 346999999999999998733 23456788999999999999999999
Q ss_pred EEEECCCcEEEEeCC---CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-ccCCCEEEEE
Q 011978 376 ASASFDKSIKLWNGT---TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVD 451 (473)
Q Consensus 376 asgs~d~~v~lwd~~---~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~ 451 (473)
+++|.|++|++|+-. .-.++.++.+|.+.|.+++|+|.|..|++++.|++|+||-..+ .++ -|..+++.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVP 240 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeee
Confidence 999999999999765 3468899999999999999999999999999999999997653 222 3678999999
Q ss_pred EeeCCCEEEEEeCCCcEEecc
Q 011978 452 WSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 452 ~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|. ...|+|++.|+.|+||.
T Consensus 241 W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 241 WD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred ec--ccceEeccCCCEEEEEE
Confidence 98 45899999999999985
No 67
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.7e-31 Score=241.42 Aligned_cols=369 Identities=25% Similarity=0.428 Sum_probs=260.5
Q ss_pred cccccccCCcccEEEEEECCCCC---eEEEEeCCCeEEEEeCCCCc-----------------eeE----E---------
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT-----------------PMF----K--------- 145 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~---~lat~s~d~~i~iwd~~~~~-----------------~~~----~--------- 145 (473)
.....+.||++.|.+++|...+. +||++|.|..||||.+.-+. +.+ .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 34567899999999999987655 78999999999999763111 111 1
Q ss_pred -EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc--c----cCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978 146 -CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--N----PLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (473)
Q Consensus 146 -~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~--~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~ 218 (473)
+.||+++|.++.|+|++..|++++.|+++.+|...+...+- . ...+......+.-|+| +...+++-+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecc
Confidence 23899999999999999999999999999999876542110 0 1122333455555665 4467888899
Q ss_pred CCcEEEEECCC-C--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----ceeeeeeccCceEEEEEec
Q 011978 219 DGDARIWDVSL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 219 dg~i~iwd~~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~ 290 (473)
.|..++|.... . .....+.||...|..+.|+|.| +|++.+.|.+-|+|-.-.. ..+.+-+.|+..+.++++-
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 99999998222 1 2334567999999999999987 6889999999999864311 2233346688889999877
Q ss_pred c-cceeeeccccCCCcccCCHHHHHHHHHhhhh-ccc--------------CCCCceEEE-ecCCceE-EE-Ee------
Q 011978 291 T-EYALRTGAFDHTGKQYSSPEEMKKAALERYN-KIK--------------GNAPERLVS-GSDDFTM-FL-WE------ 345 (473)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~l~~-~~~d~~i-~i-wd------ 345 (473)
+ +..+..++.....+.|..|............ ... +....-+.- -..+|.. .. .+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 6 5556666655555556555443221111000 000 000000000 0011110 00 00
Q ss_pred ------CCCC--------CCCeeeecCcccceeEEEECCCCcEEEEEECCC-----cEEEEeCCCCceEEEeeCCccCEE
Q 011978 346 ------PAVS--------KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 346 ------~~~~--------~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-----~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
++.. -....++.||...|.+++.+|+|+++|++.... .|++|+..+....+.+.+|.-.|+
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 1000 012345789999999999999999999987543 599999999888889999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCce----eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.++|||||++|++.|.|.++.+|....... ...++.|..-|++++|+||+++++|+|.|+++++|.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999998754321 234678999999999999999999999999999995
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-32 Score=219.77 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=234.6
Q ss_pred EEEcCCCCCEEEEEECC---CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978 144 FKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~---dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg 220 (473)
..+.+|..+|..++||| +|-+|++++.|+.-.+-+-++|..+. .+.+|++.|-+...+ .+..+.++++.|-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-tfeghkgavw~~~l~-----~na~~aasaaadf 81 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-TFEGHKGAVWSATLN-----KNATRAASAAADF 81 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-eeeccCcceeeeecC-----chhhhhhhhcccc
Confidence 45789999999999985 88899999999998888888888776 478999887665433 3445778999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeec
Q 011978 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTG 298 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 298 (473)
+.++||.-++..+..+ .|...|..++|+.|. .|++|+.+.-+|+||+...+ ....+.+|...|..+.+.-.
T Consensus 82 takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------ 154 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------ 154 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------
Confidence 9999999998877766 477889999999876 69999999999999987643 34567778877777655321
Q ss_pred cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (473)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg 378 (473)
...++++++|+++++||.+........... ..|+++.++++|++|.++
T Consensus 155 ------------------------------D~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 155 ------------------------------DKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGRILTIA 202 (334)
T ss_pred ------------------------------CceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCCEEEEe
Confidence 335788899999999998877655444333 358999999999988776
Q ss_pred ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCC
Q 011978 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGE 457 (473)
Q Consensus 379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~ 457 (473)
. .+.|.+||..+..++..++.. ..|.+.+.+|+...+++|+.|..++.||..+++.+... +||.++|.++.|+|||.
T Consensus 203 ~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 203 Y-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred c-CceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 4 468999999998888887643 46889999999999999999999999999999988875 89999999999999999
Q ss_pred EEEEEeCCCcEEecc
Q 011978 458 KVASGGKDRVLKLWM 472 (473)
Q Consensus 458 ~l~s~~~D~~i~~w~ 472 (473)
..++||.||+|+||+
T Consensus 281 ~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQ 295 (334)
T ss_pred eeeccCCCceEEEEE
Confidence 999999999999996
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.1e-30 Score=252.36 Aligned_cols=288 Identities=25% Similarity=0.430 Sum_probs=230.4
Q ss_pred CcccEEEEEECCCCCeEEEEe--CCCeEEEEeCCC------------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg 172 (473)
+...|.+++.+|||..+|||+ .|+.++||+... .+.+.....|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 899999998642 233455678999999999999999999999999
Q ss_pred eEEEeeCCC----------Ccc-------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE
Q 011978 173 ELQCWDPQT----------GKP-------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (473)
Q Consensus 173 ~i~iwd~~~----------~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~ 235 (473)
.|.+|.... |.. ....+.+|...|..+.|+| +..++++++-|++|.+||..+.+++..
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-----~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-----DDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-----CccEEEEecccceEEEEccccceeeee
Confidence 999999763 000 1234678999999999998 456999999999999999999999999
Q ss_pred ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 236 ~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+.+|...|-.+.|+|-| ++++-+.|++|++|+..+-...+.+..+..
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------------------------------- 214 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------------------------------- 214 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------------------------------
Confidence 99999999999999988 577889999999998655333333221100
Q ss_pred HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC----CCcEEEEeCC
Q 011978 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGT 390 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~----d~~v~lwd~~ 390 (473)
.. .-...+..+.|||||++|++.-. -.++.|.+-.
T Consensus 215 -----------------------------------~~------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~ 253 (942)
T KOG0973|consen 215 -----------------------------------ES------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG 253 (942)
T ss_pred -----------------------------------hC------CCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence 00 00123567889999999998743 3478888887
Q ss_pred CCceEEEeeCCccCEEEEEEecC------C-----------CEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEE
Q 011978 391 TGKFVAVFRGHVGPVYQISWSAD------S-----------RLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDW 452 (473)
Q Consensus 391 ~~~~~~~~~~h~~~v~~v~~sp~------g-----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~ 452 (473)
+.+.-..|-||.+++.+++|+|. . ..+|+||.|++|-||.....+.+..+.. -...|..++|
T Consensus 254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW 333 (942)
T KOG0973|consen 254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW 333 (942)
T ss_pred CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence 77877889999999999999972 1 1688999999999999876666443221 2357999999
Q ss_pred eeCCCEEEEEeCCCcEEecc
Q 011978 453 SPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 453 s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|||-.|..+|.||+|.+..
T Consensus 334 spdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 334 SPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred cCCCCeEEEEecCCeEEEEE
Confidence 99999999999999998764
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=218.23 Aligned_cols=290 Identities=23% Similarity=0.406 Sum_probs=229.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-----------------C-ceeEEEcCCCCCEEEEEECCC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------------Q-TPMFKCTGHKNWVLCIAWSAD 161 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-----------------~-~~~~~~~~~~~~v~~l~~s~d 161 (473)
....+..|..++.+.+|+|||.++|||+.|..|+|.|++. + ..+..+-.|...|.++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3445678999999999999999999999999999999861 0 123456689999999999999
Q ss_pred CCeEEEEecCCeEEEeeCCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---c
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---S 237 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~ 237 (473)
...|++|+.|++|+++|........ ........+|.++.|+| .+..++.|..-.++++||+.+-+|...- .
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 9999999999999999986432110 01112235688888887 5678888888899999999998887654 3
Q ss_pred CccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 238 GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 238 ~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
+|...|+++.+++.+. .++|+.||.|++||-.++++++++.. |+
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~---------------------------------- 304 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG---------------------------------- 304 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC----------------------------------
Confidence 6899999999999884 67999999999999888877765421 11
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~ 395 (473)
...|.+..|..+|+||.+.+.|..+++|.+.+++++
T Consensus 305 --------------------------------------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 305 --------------------------------------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred --------------------------------------------CceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 124677889999999999999999999999999999
Q ss_pred EEeeCCc--c---CEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 396 AVFRGHV--G---PVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 396 ~~~~~h~--~---~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
..+.|-. + .-+...|+....+++.-. ..+.+.-||.++......+ -||.+.+..+.-||.+..+.++|.|..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 8887531 1 224455666666666543 3457888999986544332 3799999999999999999999999999
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
|+|.
T Consensus 421 RFWy 424 (430)
T KOG0640|consen 421 RFWY 424 (430)
T ss_pred eeee
Confidence 9995
No 71
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=2.5e-30 Score=237.84 Aligned_cols=278 Identities=27% Similarity=0.458 Sum_probs=235.0
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc-ccCCCcCCcEEE-EEeceeccCCCCceEEEeeCCC
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~-i~~~~~~~~~~~~~~~s~s~dg 220 (473)
...+.+|...|..+++.+. ..+++++.||++++|+-..+.... ..+.+|.+.|.. +.+.+ .+..++++|+.|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e----~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE----SDKGRLVVGGMDT 81 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc----ccCcceEeecccc
Confidence 3457799999999888754 479999999999999986665444 456778887776 66554 2445799999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
.+.+|.......++.+.||...|.|++...++.+++|++|.++++|- .+++...+.+|...|+++..-++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e-------- 151 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPE-------- 151 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCC--------
Confidence 99999999999999999999999999988888899999999999995 45677779999999998876543
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~ 380 (473)
..+++||.|.+|++|.. ......+.+|.+.|+.+++-|++. +++++.
T Consensus 152 -----------------------------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsN 198 (745)
T KOG0301|consen 152 -----------------------------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN 198 (745)
T ss_pred -----------------------------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecC
Confidence 25899999999999974 445567889999999999998754 788999
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEE
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~ 460 (473)
||.|++|+. +|+++..+.+|++.|.+++..+++..+++++.|++++||+.. ++.+.+.-....|+++.+-++|. ++
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Iv 274 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IV 274 (745)
T ss_pred CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EE
Confidence 999999998 789999999999999999988889999999999999999987 45555543345799999888875 79
Q ss_pred EEeCCCcEEecc
Q 011978 461 SGGKDRVLKLWM 472 (473)
Q Consensus 461 s~~~D~~i~~w~ 472 (473)
+|++||.|+||.
T Consensus 275 vg~SDG~VrVfT 286 (745)
T KOG0301|consen 275 VGGSDGRVRVFT 286 (745)
T ss_pred EeccCceEEEEE
Confidence 999999999995
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=2.5e-31 Score=234.69 Aligned_cols=256 Identities=25% Similarity=0.447 Sum_probs=206.8
Q ss_pred EEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEec
Q 011978 92 FRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSK 170 (473)
Q Consensus 92 ~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~ 170 (473)
+.+....+|.+++.||..+|.+++|+++|..+.++|.|+++++||+++|+++..+.. ...+.|+.|.||+ +.+++|+.
T Consensus 242 W~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s 320 (503)
T KOG0282|consen 242 WNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS 320 (503)
T ss_pred EEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC
Confidence 344556789999999999999999999999999999999999999999998877642 3457899999998 78889999
Q ss_pred CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEec
Q 011978 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWG 249 (473)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~ 249 (473)
|+.|+.||+++++.+ +.+..|-+.|..+.|.+ .+.+|++.+.|++++||+.+....+.... .+.....|+...
T Consensus 321 d~ki~~wDiRs~kvv-qeYd~hLg~i~~i~F~~-----~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 321 DKKIRQWDIRSGKVV-QEYDRHLGAILDITFVD-----EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred CCcEEEEeccchHHH-HHHHhhhhheeeeEEcc-----CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 999999999999844 45677888999999877 56799999999999999998876554332 223345677777
Q ss_pred CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 250 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
|++ .+++-+.|+.|.+|.....-
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~-------------------------------------------------------- 418 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPF-------------------------------------------------------- 418 (503)
T ss_pred CCCCeehhhccCceEEEEeccccc--------------------------------------------------------
Confidence 776 45566788888877642110
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
......++.||. +.-..+.|||||++|++|+.||.+.+||..+-+.+..+++|.+++.
T Consensus 419 --------------------r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 419 --------------------RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred --------------------ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 001112233332 2345689999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEeCCCcEEEEE
Q 011978 407 QISWSADS-RLLLSGSKDSTLKVWD 430 (473)
Q Consensus 407 ~v~~sp~g-~~l~s~s~Dg~i~iwd 430 (473)
.+.|+|.. ..+|+++.||.|++||
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 99999954 5899999999999996
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=7.9e-30 Score=218.69 Aligned_cols=278 Identities=26% Similarity=0.466 Sum_probs=220.2
Q ss_pred HhHHHhcCCCcccEEEEEEEeceeEEEee-cccccccccCCcccEEEEEECCCC---CeEEEEeCCCeEEEEeCCCCce-
Q 011978 68 GSYLEKHKVSVEKVLSIVYQPQAVFRIRP-VNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTP- 142 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~~~~sp~~---~~lat~s~d~~i~iwd~~~~~~- 142 (473)
..|+..-+...+-+++-.|.. ..+++. .+++..++.||+++|.++++.-.. ..+++++.|.++++|.++.+..
T Consensus 105 dDWVSsv~~~~~~IltgsYDg--~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDG--TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred hhhhhhhcccCceEEEeecCC--eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 345555555656677776754 345554 467888899999999988875443 3599999999999999876643
Q ss_pred ---eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc------------------------cccccCCCcCCc
Q 011978 143 ---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKW 195 (473)
Q Consensus 143 ---~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~------------------------~~~~~~~~~~~~ 195 (473)
+..+.||+..|-++...++|..+++|+.|.+|.+|+..+.. .....+.||...
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence 23456999999999999999999999999999999922100 011346899999
Q ss_pred EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee
Q 011978 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~ 274 (473)
|.++.|.+ ...+.+++.|.+|+.||+.++.+...+.+ .....|+...+.. +|++|+.|..|++||-+++.
T Consensus 263 Vs~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-- 333 (423)
T KOG0313|consen 263 VSSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-- 333 (423)
T ss_pred eeeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC--
Confidence 99999987 24789999999999999999988877655 3467888887755 57788888888888876541
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
+.....
T Consensus 334 --------------------------------------------------------------------------gs~v~~ 339 (423)
T KOG0313|consen 334 --------------------------------------------------------------------------GSVVSQ 339 (423)
T ss_pred --------------------------------------------------------------------------CceeEE
Confidence 112234
Q ss_pred eecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 355 RMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
.+.+|..+|.++.|+|. -..|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.|.+|+|+.-
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 56789999999999995 4578899999999999999887 899999999999999997 4668999999999999854
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.7e-29 Score=230.18 Aligned_cols=243 Identities=42% Similarity=0.702 Sum_probs=210.2
Q ss_pred EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
.+.+|..+|.+++|+|++++|++++.||.+++|+..+++.. .....|...+..+.|.|. ...+++++.++.+++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~~~i~i 77 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASAD-----GTYLASGSSDKTIRL 77 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCC-----CCEEEEEcCCCeEEE
Confidence 35689999999999999999999999999999999877533 345678888888888773 358999999999999
Q ss_pred EECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (473)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (473)
||+..++.+..+.+|...+.++.|.+++. +++++.|+.+++||+.+++....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------------------- 131 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-------------------------- 131 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe--------------------------
Confidence 99998888888889998999999998864 555666999999998755433221
Q ss_pred CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~ 383 (473)
..|...+.+++|+|++.++++++.|+.
T Consensus 132 -----------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 132 -----------------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred -----------------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 134456889999999999999988999
Q ss_pred EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
|++||.++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.++....+..|...+.++.|+|++.++++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999999998899999999999999999999999999999999999999888888878888999999999999999998
Q ss_pred CCCcEEecc
Q 011978 464 KDRVLKLWM 472 (473)
Q Consensus 464 ~D~~i~~w~ 472 (473)
.|+.+++|+
T Consensus 239 ~~~~i~i~~ 247 (289)
T cd00200 239 EDGTIRVWD 247 (289)
T ss_pred CCCcEEEEE
Confidence 899999996
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=5.1e-30 Score=225.17 Aligned_cols=283 Identities=26% Similarity=0.422 Sum_probs=225.9
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-----------------EEE-cCCCCCEEEEEECCCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----------------FKC-TGHKNWVLCIAWSADGK 163 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-----------------~~~-~~~~~~v~~l~~s~dg~ 163 (473)
..+..|.-+|.+++++|++.+.++++.|++|.-|++.++... ..- +.|...+.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 445779999999999999999999999999999998776422 001 27888999999999999
Q ss_pred eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (473)
Q Consensus 164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 243 (473)
+|++|+.|..|.||+.++.+... .+.+|.+.|.+++|.. ....+.+++.|+++++|++.....+.++.||...|
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 99999999999999999988764 4789999999999875 33579999999999999999888888899999999
Q ss_pred EEEEecCCCeEEE-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 244 TCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 244 ~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
..+....-+.++| |+.|+++++|++..... -.+.++...+.++++-.
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In------------------------------- 337 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN------------------------------- 337 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-------------------------------
Confidence 9988776666555 56999999999954322 23456666666666532
Q ss_pred cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-----------cccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
.+.+++|+++|.|.+|++...+........ +..+|++++..|...++|+|+.+|.|++|-+..
T Consensus 338 ------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 338 ------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 357999999999999997655433322222 234899999999999999999999999998887
Q ss_pred C----ceEEEeeCCccCEEEEEEecCCCEEEEE-eCCCcEEEE
Q 011978 392 G----KFVAVFRGHVGPVYQISWSADSRLLLSG-SKDSTLKVW 429 (473)
Q Consensus 392 ~----~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~iw 429 (473)
+ .++..+. -.+.|++++|+++|+.|++| +....+--|
T Consensus 412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred Cccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 6 3445554 56899999999999966554 455444334
No 76
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=3.8e-29 Score=238.59 Aligned_cols=267 Identities=17% Similarity=0.272 Sum_probs=203.1
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-------------EEEcCCCCCEEEEEECC-CCCeEEEEecCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG 172 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg 172 (473)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4456666777888777888888777788876543221 13568999999999999 889999999999
Q ss_pred eEEEeeCCCCcc------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978 173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (473)
Q Consensus 173 ~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 246 (473)
+|++||+.++.. ....+.+|...|.++.|+|.. ...+++++.|++|++||+.+++.+..+.+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 999999876531 123467899999999999842 2479999999999999999999999999999999999
Q ss_pred EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
+|++++ .|++++.|++|++||+++++.+..+.+|...
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~------------------------------------------ 212 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA------------------------------------------ 212 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC------------------------------------------
Confidence 999988 5889999999999999988766554433210
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE----CCCcEEEEeCCCCc-eEEEeeC
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS----FDKSIKLWNGTTGK-FVAVFRG 400 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs----~d~~v~lwd~~~~~-~~~~~~~ 400 (473)
....+.|.+++..+++++ .|+.|++||+++.. .+.....
T Consensus 213 ------------------------------------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 213 ------------------------------------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred ------------------------------------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 122345667666666554 47899999998754 3444433
Q ss_pred C-ccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc-cCCCEEEEEEeeC
Q 011978 401 H-VGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPD 455 (473)
Q Consensus 401 h-~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d 455 (473)
+ ...+....|++++++|++++ .|+.|++||+..++....... +...+.+++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 3 34566778999999999887 499999999998876554432 3445667777774
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-30 Score=243.32 Aligned_cols=282 Identities=20% Similarity=0.358 Sum_probs=204.8
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE--------eceeccCC-----CCceEE
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--------WEPVHLNA-----PCRRFV 214 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~~-----~~~~~~ 214 (473)
.|.+.|+++.||+||++||+|+.|+.|+||.+...+.... +...-.++. ..|..... .....-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~----~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV----AEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc----cccccchhhhhhhhccccCccccccccccccccccc
Confidence 7999999999999999999999999999999865322110 000000000 00100000 000001
Q ss_pred EeeCCCcEEEEECC----CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 215 SASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 215 s~s~dg~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
.+..... .+.+.. ..+.+..+.||.+.|..+.|+.++.|++++.|.++|||++....+++.| .|...|+|++|+
T Consensus 341 ~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred cccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 1111112 111111 1345567889999999999999999999999999999999988888876 478889999998
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 370 (473)
|. ....+++|+-|+.++||.+...+ ......-.+.|++++|+|
T Consensus 419 Pv-----------------------------------DDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 419 PV-----------------------------------DDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSP 461 (712)
T ss_pred cc-----------------------------------CCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEecc
Confidence 74 24569999999999999975432 222222346799999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCceEEEeeC--C------ccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeccc
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG--H------VGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP 441 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h------~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 441 (473)
||++.+.|+.+|.+++|+....++...+.- | ...|+.+.|.|.. ..+++.+.|..|+|||.+...++..++
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999999999999999887766543321 1 2279999999844 356677889999999998888888888
Q ss_pred ccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 442 GHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 442 ~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+.. .=....|+.||++|++++.|..|.+|.
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 7543 224568999999999999999999996
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=244.84 Aligned_cols=252 Identities=26% Similarity=0.454 Sum_probs=201.6
Q ss_pred cccc-CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--------------------------------C--------
Q 011978 102 ATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------------------------------Q-------- 140 (473)
Q Consensus 102 ~~~~-gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--------------------------------~-------- 140 (473)
+.+. +|.+.|+++.||+||++||+|+.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999997633 0
Q ss_pred --------------------ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE
Q 011978 141 --------------------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (473)
Q Consensus 141 --------------------~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 200 (473)
+|+..+.+|.+.|..|.||.+ .+|++++.|.+|++|++....++. ...|...|+++.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee--EEecCCeeEEEE
Confidence 123346789999999999976 589999999999999998777664 467999999999
Q ss_pred eceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeec
Q 011978 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
|+|. +.++|++|+-||.+|||++...+.+....-+ .-|++++|.|||. .+.|+.+|.+++|+....+.......
T Consensus 417 FnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 417 FNPV----DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eccc----CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9996 4579999999999999999887766544433 6799999999995 77899999999999877665443221
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
+. .. .++. .|
T Consensus 492 ~~-----------------------------------------------------------------~~----~Kk~-~~ 501 (712)
T KOG0283|consen 492 RL-----------------------------------------------------------------HN----KKKK-QG 501 (712)
T ss_pred ee-----------------------------------------------------------------cc----Cccc-cC
Confidence 00 00 0111 12
Q ss_pred ccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 360 QQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 360 ~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
. .|+.+.|.|. ...++..+.|..|||+|.++..++..|+|+.. .=....|+.||++|++++.|..|+||+..
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 2 6899999874 33566778899999999998899999987643 33567899999999999999999999973
No 79
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=232.18 Aligned_cols=279 Identities=25% Similarity=0.434 Sum_probs=232.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEE-EEECC-CCCeEEEEecCCeEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGELQ 175 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~-l~~s~-dg~~l~s~~~dg~i~ 175 (473)
....+.||...|..+++.+. ..++++|.||++++|+-..+.- ...+.+|.+.|.+ +++-+ ++..|++|+.|..|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 34578899999998887654 4789999999999999755442 3446678888877 88775 555799999999999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEE
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (473)
+|...+..+.. .+.+|...|.+++... + ..+++||+|.++++|-. +++...+.+|...|+++..-+++.++
T Consensus 85 v~~~~~~~P~~-~LkgH~snVC~ls~~~-----~-~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 85 VFKLSQAEPLY-TLKGHKSNVCSLSIGE-----D-GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred EEecCCCCchh-hhhccccceeeeecCC-----c-CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence 99998877654 6889999999886322 2 34899999999999964 56677799999999999999999999
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
||+.|.+||+|.- ++.++++.+|...|+.+++-++ ..++++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flSc 196 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLSC 196 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEee
Confidence 9999999999975 7889999999999999987653 258999
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
+.||.|++|+.. .....++.+|...+.+++..+++..+++++.|+++++|+.. ++.+.+.-..-.|+++.+-++|.
T Consensus 197 sNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 197 SNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred cCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC
Confidence 999999999973 34567889999999999988899999999999999999866 77777765555899999988886
Q ss_pred EEEEEeCCCcEEEEECC
Q 011978 416 LLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~ 432 (473)
+++|+.||.||||...
T Consensus 273 -Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 273 -IVVGGSDGRVRVFTVD 288 (745)
T ss_pred -EEEeccCceEEEEEec
Confidence 6678889999999765
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=223.87 Aligned_cols=249 Identities=25% Similarity=0.446 Sum_probs=196.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
...++.||..+|..+.||||.++|++|+.|..+++||+.++....... ++...+.|++|.|||..+++|+.|+++..||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 456789999999999999999999999999999999999998765543 4578899999999999999999999999999
Q ss_pred CCCCccccccCCC-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEE
Q 011978 179 PQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT 256 (473)
Q Consensus 179 ~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s 256 (473)
.+.... . .-.+ ....|.+++.. .++.++++...|..+++++.++........ ....|++.+.+.++. +++
T Consensus 341 lDgn~~-~-~W~gvr~~~v~dlait-----~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 341 LDGNIL-G-NWEGVRDPKVHDLAIT-----YDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV 412 (519)
T ss_pred CCcchh-h-cccccccceeEEEEEc-----CCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence 864321 1 0111 11335555543 477889999999999999988766553333 335789999999885 556
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
.-.+..+.+||++..+.++.+.+|... .+
T Consensus 413 nL~~qei~LWDl~e~~lv~kY~Ghkq~-----------------------------------------------~f---- 441 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKYFGHKQG-----------------------------------------------HF---- 441 (519)
T ss_pred EcccCeeEEeecchhhHHHHhhccccc-----------------------------------------------ce----
Confidence 778999999999987777666655321 00
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-C
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-S 414 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g 414 (473)
+-.-+|-- +..++|+||.|+.|+||+..+|+++.++.||...|++|+|+|. .
T Consensus 442 --------------------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 442 --------------------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP 495 (519)
T ss_pred --------------------------EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH
Confidence 11112322 4578999999999999999999999999999999999999994 5
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 011978 415 RLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~ 433 (473)
.++|+||+||+|+||....
T Consensus 496 ~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 496 EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHhhccCCCCeEEEecCCc
Confidence 6899999999999997754
No 81
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-30 Score=242.86 Aligned_cols=267 Identities=23% Similarity=0.402 Sum_probs=221.0
Q ss_pred cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (473)
Q Consensus 147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd 226 (473)
...+..|..++|+|....++++--+|.|++||.+-+..+. .+..|.++|.++.|+|. ...|++||.|-.|++|+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-rFdeHdGpVRgv~FH~~-----qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVDFHPT-----QPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh-hhhccCCccceeeecCC-----CCeEEecCCccEEEEEe
Confidence 3446678999999999999999999999999998776543 47889999999999984 45899999999999999
Q ss_pred CCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978 227 VSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 227 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
...++|+.++.||...|..+.|+++- .|++++.|.+|++|+..+++++..+.+|.+.|.|..|+|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------------- 146 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------------- 146 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-------------
Confidence 99999999999999999999999875 6999999999999999999999999999999999988874
Q ss_pred ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE---EEEECCC
Q 011978 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV---ASASFDK 382 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l---asgs~d~ 382 (473)
.+.++++|-|.++++||+...+.......+-.+. +.+..+ .-|+.|-
T Consensus 147 -----------------------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~-------~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 147 -----------------------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ-------MRGQQGNSDLFGQTDA 196 (1202)
T ss_pred -----------------------cceEEEecccceEEEEeecchhccCCCCCCchhh-------hhccccchhhcCCcCe
Confidence 3579999999999999986433211110000000 011111 1122222
Q ss_pred cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eecccccCCCEEEEEEeeCCCEEE
Q 011978 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~ 460 (473)
-...+++||...|+-++|+|.-..++||++|..|++|.+...+. ..++.||...|.++-|+|..+.++
T Consensus 197 ----------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 197 ----------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred ----------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 22357899999999999999999999999999999999976553 568899999999999999999999
Q ss_pred EEeCCCcEEecc
Q 011978 461 SGGKDRVLKLWM 472 (473)
Q Consensus 461 s~~~D~~i~~w~ 472 (473)
|.|+|++|++|+
T Consensus 267 SnsEDksirVwD 278 (1202)
T KOG0292|consen 267 SNSEDKSIRVWD 278 (1202)
T ss_pred ecCCCccEEEEe
Confidence 999999999997
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=229.54 Aligned_cols=323 Identities=16% Similarity=0.307 Sum_probs=252.9
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCEEEEEECC-C----------CCeEEEEecCCeEEE
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSA-D----------GKHLVSGSKAGELQC 176 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~---~~~~~~~~~v~~l~~s~-d----------g~~l~s~~~dg~i~i 176 (473)
-.++.|+|..++|.....|..++|||+..-..+ .....|...|+.+.--| + ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 456789999999999999999999999764332 33456777777776544 1 235889999999999
Q ss_pred eeCCCCc---cc-cccC--------------------------------CCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978 177 WDPQTGK---PS-GNPL--------------------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 177 wd~~~~~---~~-~~~~--------------------------------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg 220 (473)
||+..+. .. ..++ -+....+.+++. ++++..+++|...|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v-----Sp~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV-----SPDGQHLASGDRGG 481 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE-----CCCcceecccCccC
Confidence 9987521 10 0000 011122334444 44678899999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEecCC----CeEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEeccccee
Q 011978 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
++++||+..-..+..+..|...|.|+.|+.. .+|++++.|+-|.+||+... .++.++.+|...|.++.|....
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g-- 559 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG-- 559 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--
Confidence 9999999988888888999999999999843 36889999999999998654 5667889999999998875431
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----cccceeEEEECCC
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG----HQQLVNHVYFSPD 371 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~v~~sp~ 371 (473)
...++++++.|+.+.+--..........+.+ ....+..+++.|.
T Consensus 560 --------------------------------ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 560 --------------------------------LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred --------------------------------CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 1235777888877654322211111111211 2345788999999
Q ss_pred CcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE
Q 011978 372 GQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448 (473)
Q Consensus 372 g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~ 448 (473)
.+++++++.|+.|+|||+++|+....|++ |.+....|...|.|.|||+...|.++-++|..++++..++.||...|+
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence 99999999999999999999999999976 667788999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCEEEEEeCCCcEEecc
Q 011978 449 AVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 449 ~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+.|++|-+.|+|++.||.|.||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE
Confidence 999999999999999999999996
No 83
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.1e-28 Score=206.49 Aligned_cols=270 Identities=20% Similarity=0.311 Sum_probs=210.2
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
..+.|.++.|+|.+..|+.++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 3678999999999999999999999999999877443333 4889999999986 468999999999999999988653
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
.+..|...|.++.+.+. ...+++||+|++|++||.+.......+.. ...|.|+...++ .|+.|+.|..+.+|
T Consensus 89 -~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIY 160 (323)
T ss_pred -eeccCCCceEEEEeecc-----CCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEE
Confidence 46779999999988753 35789999999999999886444333322 236777766543 66777788888888
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
|+++-....+
T Consensus 161 DLRn~~~~~q---------------------------------------------------------------------- 170 (323)
T KOG1036|consen 161 DLRNLDEPFQ---------------------------------------------------------------------- 170 (323)
T ss_pred Ecccccchhh----------------------------------------------------------------------
Confidence 8765321100
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC----ceEEEeeCCc---------cCEEEEEEecC
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGHV---------GPVYQISWSAD 413 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~----~~~~~~~~h~---------~~v~~v~~sp~ 413 (473)
.+...-...++||++-|++.-.+.+|-||.|.+=.+... +.-..|+.|. -||++++|+|-
T Consensus 171 -------~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 171 -------RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred -------hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 001112245889999999988999999998876544433 2335566664 37999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
-+.||||+.||.|.+||+...|.+..+..-...|..++|+.||..||.++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 889999999999999999999988888877788999999999999998875
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=230.93 Aligned_cols=362 Identities=22% Similarity=0.346 Sum_probs=254.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEE
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQC 176 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~i 176 (473)
++.+.++.++.+.|+++.-+|-=+.+|.|..+|+|.|++++.++.+..++...+.|++++|..||..+ ++|+..|.+.+
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 45677889999999999999999999999999999999999999988888656899999999999755 56667799999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC--C--eEEEEecCccccEEEEEecC-C
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--R--KCVICLSGHTLAVTCVKWGG-D 251 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~~~~~~-~ 251 (473)
||++..+........|.+.+....|.| .+..+++.+.|..+++|=..+ + +.+..-.||..+..|+.|-. +
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~-----~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLP-----GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecC-----CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 999988877777788988888888776 345788889999888884432 2 23334456666666666642 3
Q ss_pred C-eEEEeecCCeEEEEEC--------------------------------------------------------------
Q 011978 252 G-VIYTGSQDCTIKVWET-------------------------------------------------------------- 268 (473)
Q Consensus 252 ~-~l~s~~~d~~i~~wd~-------------------------------------------------------------- 268 (473)
+ .+.+++.|++.+.+++
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 3 3555566555554432
Q ss_pred ---CCCcee-eeeecc-------CceEEEEEecccceee---eccccC----CCc---cc-CCHHHHHHHHHhhhhc-cc
Q 011978 269 ---TQGKLI-RELKGH-------GHWVNSLALSTEYALR---TGAFDH----TGK---QY-SSPEEMKKAALERYNK-IK 325 (473)
Q Consensus 269 ---~~~~~~-~~~~~~-------~~~v~~~~~~~~~~~~---~~~~~~----~~~---~~-~~~~~~~~~~~~~~~~-~~ 325 (473)
++...- ..+... ....-++...-++.+. .+..+. .+. .| .++. ....... ..
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a-----h~~~V~gla~ 501 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA-----HKGEVTGLAV 501 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc-----ccCceeEEEe
Confidence 211110 001000 1122333333222221 111110 000 00 0000 0000000 01
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCE
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v 405 (473)
......+++++.+|.+..||..........-. ...+.++.++-....+|.+..|-.|+++|..+.+.++.|.||.+.|
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI 579 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence 12234689999999999999754432111112 2356777888888899999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEecc
Q 011978 406 YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM 472 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w~ 472 (473)
++++|||||++|++++.|++|++||+.++..+-.+. -..+...+.|||+|.+||++..| .-|.+|.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999999999999999999998875553 35678899999999999999999 6788884
No 85
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.1e-28 Score=231.78 Aligned_cols=251 Identities=18% Similarity=0.300 Sum_probs=192.0
Q ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccc-------cccCCCcCCcEE
Q 011978 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT 197 (473)
Q Consensus 126 ~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~v~ 197 (473)
|+.++.|++|+.....++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++... ...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556889999998887788889999999999999996 789999999999999999764321 123578999999
Q ss_pred EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeee
Q 011978 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~ 276 (473)
++.|+|.. ...+++++.|++|++||+++++.+..+. |...|.+++|+++|. |++++.|+.|++||.++++.+..
T Consensus 130 sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 130 IIDWNPMN----YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred EEEECCCC----CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999842 2356799999999999999988777665 557899999999884 66788999999999999887776
Q ss_pred eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (473)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 356 (473)
+.+|...+...
T Consensus 205 l~gH~g~~~s~--------------------------------------------------------------------- 215 (568)
T PTZ00420 205 FHIHDGGKNTK--------------------------------------------------------------------- 215 (568)
T ss_pred EecccCCceeE---------------------------------------------------------------------
Confidence 66554321110
Q ss_pred cCcccceeEEEECCCCcEEEEEECCC----cEEEEeCCC-CceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978 357 TGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTT-GKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs~d~----~v~lwd~~~-~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw 429 (473)
.+....|++++.+|++++.|+ .|+|||++. ++++..+. .+.+.+...-..++|.++++|+.|++|++|
T Consensus 216 -----~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 216 -----NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred -----EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence 122345778999999988774 799999985 55555543 334444444445678999999999999999
Q ss_pred ECCCCce--eecccccCCCEEEEEEeeCC
Q 011978 430 DIRTQKL--KQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 430 d~~~~~~--~~~~~~h~~~i~~l~~s~d~ 456 (473)
++..+.. +.... +..++.+++|.|+.
T Consensus 291 e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 291 QHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EccCCcEEeecccc-cCCCccceEEcccc
Confidence 9987643 22222 45677889999863
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.7e-30 Score=206.32 Aligned_cols=256 Identities=23% Similarity=0.394 Sum_probs=184.7
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~ 179 (473)
.+|.+.|..+.+..-|++|||++.|++|+|+.+.... .+..+.+|+++|..++|.. -|..|+++++||+|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 5799999999999999999999999999999987643 5677899999999999975 7999999999999999998
Q ss_pred CCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEE
Q 011978 180 QTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIY 255 (473)
Q Consensus 180 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~ 255 (473)
++|+-.. .... .|...|++++|.|.+ .|+
T Consensus 88 ~~g~w~k~~e~~-----------------------------------------------~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 88 ENGRWTKAYEHA-----------------------------------------------AHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred CCCchhhhhhhh-----------------------------------------------hhcccceeecccccccceEEE
Confidence 7774221 1122 355556666665543 477
Q ss_pred EeecCCeEEEEECCCC-ce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 256 TGSQDCTIKVWETTQG-KL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+++.||.|.+.+.... .. .+....|..-|+++...|...
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~-------------------------------------- 162 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA-------------------------------------- 162 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC--------------------------------------
Confidence 8888998888776543 11 111233444444444333200
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~ 410 (473)
+|.+ ..|.. ...-+.|++|+.|..|+||+..+++ ....+++|.+.|.+|+|
T Consensus 163 -----~g~~---------------~~~~~-------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 163 -----PGSL---------------VDQGP-------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW 215 (299)
T ss_pred -----Cccc---------------cccCc-------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence 0000 00000 0001569999999999999988764 34568999999999999
Q ss_pred ecCC----CEEEEEeCCCcEEEEECCCC-c--eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 411 SADS----RLLLSGSKDSTLKVWDIRTQ-K--LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g----~~l~s~s~Dg~i~iwd~~~~-~--~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|.- .+||++|.||+|.||..+.. + ....+..-.+.++.++||+.|+.|+.++.|+.+.+|.
T Consensus 216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9964 47999999999999977521 1 1222333456899999999999999999999999995
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=226.80 Aligned_cols=241 Identities=31% Similarity=0.532 Sum_probs=211.5
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
+...|+++.|+++|.+||+|..+|.|.|||....+.+..+.+ |...|.+++|+ +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378999999999999999999999999999998888777777 99999999998 678999999999999999887765
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC--CCeEEEe--ecCC
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTG--SQDC 261 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~--~~d~ 261 (473)
...+.+|...|.++.|++ +..++++|+.|+.+.|||.........+..|.++|..++|+| .++|++| +.|+
T Consensus 294 ~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred hhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 556889999999999987 567999999999999999988888889999999999999997 4678875 5899
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
+|++||..+|..+..+. +
T Consensus 369 ~i~fwn~~~g~~i~~vd-------------------------------------------------------t------- 386 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-------------------------------------------------------T------- 386 (484)
T ss_pred EEEEEEcCCCcEecccc-------------------------------------------------------c-------
Confidence 99999998877654321 0
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 419 (473)
...|.+|.|++..+-|+++ -.++.|.||++.+.+.+..+.+|...|..+++||||..+++
T Consensus 387 ------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 387 ------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 1357889999988666654 34678999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCC
Q 011978 420 GSKDSTLKVWDIRTQ 434 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~ 434 (473)
|+.|.++++|++-..
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999998764
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.7e-28 Score=203.39 Aligned_cols=270 Identities=18% Similarity=0.266 Sum_probs=214.6
Q ss_pred CCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC-CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978 148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (473)
Q Consensus 148 ~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw 225 (473)
..++.|.+|+||| ....+++++.||+|++|+++. |.........|.++|.++.|+. ++..+.+|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence 3467899999999 455666899999999999987 4555566778999999999976 56789999999999999
Q ss_pred ECCCCeEEEEecCccccEEEEEecCCC---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
|+.++ .+.....|..+|.++.|-+.. .|+||++|++||.||.+....+.++...+ .+.++.+-
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~------------ 165 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL------------ 165 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc------------
Confidence 99998 455677899999999996532 68999999999999999888777665432 22222211
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d 381 (473)
...++.+..++.|.++.+.......+++.. -.-.++||+..+|....|.|+-.
T Consensus 166 --------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 166 --------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred --------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 124677788899999998655433333222 23458999999999888999999
Q ss_pred CcEEEEeCCCC--ceEEEeeCCcc---------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEE
Q 011978 382 KSIKLWNGTTG--KFVAVFRGHVG---------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV 450 (473)
Q Consensus 382 ~~v~lwd~~~~--~~~~~~~~h~~---------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l 450 (473)
|.+-+..+..+ +.-.+|+.|+. .|++++|+|.-..|++++.||+..+||-.....+.+.+.|..+|++.
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc 299 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC 299 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee
Confidence 99999988776 43456666652 58899999988899999999999999998877777778899999999
Q ss_pred EEeeCCCEEEEE
Q 011978 451 DWSPDGEKVASG 462 (473)
Q Consensus 451 ~~s~d~~~l~s~ 462 (473)
+|+.+|.++|-+
T Consensus 300 ~fn~~G~ifaYA 311 (347)
T KOG0647|consen 300 SFNRNGSIFAYA 311 (347)
T ss_pred EecCCCCEEEEE
Confidence 999999999865
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.4e-28 Score=214.70 Aligned_cols=273 Identities=27% Similarity=0.369 Sum_probs=223.7
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc----------------cC-CCcCCcEEEEEeceecc
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----------------PL-SGHKKWITGISWEPVHL 206 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~----------------~~-~~~~~~v~~i~~~~~~~ 206 (473)
.....|.-++.||+++||+++.++++.+++|.-|+..+|+.... .. .+|.+.+.+++.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--- 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--- 212 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence 34557889999999999999999999999999999988763310 01 26777777777665
Q ss_pred CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEE
Q 011978 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN 285 (473)
Q Consensus 207 ~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 285 (473)
++.+|++|+.|..|.||+..+.+.+..+++|...|.+++|-.. ..+++++.|+++++|++..-..+.++.+|...|.
T Consensus 213 --Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 213 --DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred --CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 7789999999999999999999999999999999999999643 4799999999999999998888888999988888
Q ss_pred EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (473)
.+.... .+++++ |+.|+++++|++.. ..+..+.+|...+.
T Consensus 291 ~IdaL~-------------------------------------reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid 331 (479)
T KOG0299|consen 291 GIDALS-------------------------------------RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID 331 (479)
T ss_pred eechhc-------------------------------------ccceEEeccccceeEEEeccc--cceeeeeCCCCCee
Confidence 775432 234444 55999999999843 33455677888899
Q ss_pred EEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-C-----------ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-H-----------VGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h-----------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
|++|-. ...+++||.||.|.+|++.+.+++.+.+. | ..+|++|+..|...++|+||.+|.|++|-+.
T Consensus 332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 999874 46799999999999999998888776542 2 2389999999999999999999999999998
Q ss_pred CC----ceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 433 TQ----KLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 433 ~~----~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
.+ .++..++ -.+.|++|+|+++|+++++|
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 76 3445555 45789999999999966554
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.6e-28 Score=203.45 Aligned_cols=271 Identities=20% Similarity=0.281 Sum_probs=201.3
Q ss_pred CcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-cee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 107 h~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
..+.|.+|+|||.. ..++++|.|++||+|+++.. ... .....|.++|.+++|+.||..+++|+-|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 56889999999954 45668899999999999763 322 2234689999999999999999999999999999999986
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeE
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i 263 (473)
.. ....|.++|..+.|.+... ...++|||+|.+|+.||.+....+.++.- ...+.++..- ...++.+..++.|
T Consensus 106 ~~--~v~~Hd~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~-~pm~vVata~r~i 178 (347)
T KOG0647|consen 106 VS--QVAAHDAPVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL-YPMAVVATAERHI 178 (347)
T ss_pred ee--eeeecccceeEEEEecCCC---cceeEecccccceeecccCCCCeeeeeec-cceeeehhcc-CceeEEEecCCcE
Confidence 43 4678999999999977432 34689999999999999998877765532 2344444332 2367889999999
Q ss_pred EEEECCCCceee-ee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 264 KVWETTQGKLIR-EL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 264 ~~wd~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.+|+++++.... .. ..-.-.+++++...+ .+..+.|+-.|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGrv 222 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGRV 222 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecceE
Confidence 999998764321 11 111233555554433 1234666777777
Q ss_pred EEEeCCCCC-CCeeeecCcc---------cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978 342 FLWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS 411 (473)
Q Consensus 342 ~iwd~~~~~-~~~~~~~~~~---------~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s 411 (473)
.+..+.... .....+.-|. ..|++|+|+|....|+|++.||++.+||-.....+...+.|..+|++.+|+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 666544321 1122222232 358899999999999999999999999998888888888899999999999
Q ss_pred cCCCEEEEE
Q 011978 412 ADSRLLLSG 420 (473)
Q Consensus 412 p~g~~l~s~ 420 (473)
.+|.++|-+
T Consensus 303 ~~G~ifaYA 311 (347)
T KOG0647|consen 303 RNGSIFAYA 311 (347)
T ss_pred CCCCEEEEE
Confidence 999987765
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.8e-29 Score=216.13 Aligned_cols=245 Identities=26% Similarity=0.438 Sum_probs=205.7
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
...+|.|-.+.|+++.|.++++++++++.|+.+++|++...+....+.+|.+.|+++.|......+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 55678888999999999999999999999999999999999999999999999999999987777999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS 258 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~ 258 (473)
+...+...++.+.. ++.|...+ ..+++|-.|++|++||++...+......+. .|+++..+.++. +++++
T Consensus 291 ~k~~C~kt~l~~S~--cnDI~~~~-------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQ--CNDIVCSI-------SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS 360 (459)
T ss_pred hhhheecccccccc--ccceEecc-------eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence 98877766655433 23333222 357788899999999999999998888776 899999999884 88899
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|.++++.|+++......+...+ +-+
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g--------------------------------------------------~k~---- 386 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEG--------------------------------------------------FKC---- 386 (459)
T ss_pred CCCceeeeecccccEEEEeeccc--------------------------------------------------ccc----
Confidence 99999999998866554432110 001
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc--CEEEEEEecCCCE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQISWSADSRL 416 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~--~v~~v~~sp~g~~ 416 (473)
+| ..+.+.|||++.|+|+||.||.|+||++.++++...+..... .|++++|+|.|..
T Consensus 387 -------------------as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 387 -------------------AS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred -------------------cc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 11 146688999999999999999999999999999888876544 4999999999999
Q ss_pred EEEEeCCCcEEEE
Q 011978 417 LLSGSKDSTLKVW 429 (473)
Q Consensus 417 l~s~s~Dg~i~iw 429 (473)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999999
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-27 Score=195.52 Aligned_cols=276 Identities=24% Similarity=0.351 Sum_probs=224.3
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE--EEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEee
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD 178 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd 178 (473)
+.+.+|...|.+++|+-+|..||+|+.|+++++|++...+... ...+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998765433 34689999999999974 56899999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~ 257 (473)
.+.+++...... +..-.-+.|+| ++.+++.++.|..|.+.|.++.+.+.... ....+..++|+.++ .++.-
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence 999887543221 22223466777 56799999999999999999877665432 33456677787555 45555
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
..-|+|.|.....-+.+.+++.|.....++.++|+. ..+++|+.
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G------------------------------------ryfA~GsA 209 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG------------------------------------RYFATGSA 209 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCC------------------------------------ceEeeccc
Confidence 556999999999989999999999888888888763 35899999
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
|..+.+||+.... ....+..+.-+|+.+.||.||++||+||.|..|-|=+.++|..+..++ +.++-..|+|+|...+|
T Consensus 210 DAlvSLWD~~ELi-C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 210 DALVSLWDVDELI-CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLL 287 (313)
T ss_pred cceeeccChhHhh-hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCcee
Confidence 9999999975332 233445567789999999999999999999999999999999888876 78899999999999999
Q ss_pred EEEeCC
Q 011978 418 LSGSKD 423 (473)
Q Consensus 418 ~s~s~D 423 (473)
|-++.|
T Consensus 288 AyA~dd 293 (313)
T KOG1407|consen 288 AYACDD 293 (313)
T ss_pred eEEecC
Confidence 988765
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-26 Score=218.18 Aligned_cols=356 Identities=20% Similarity=0.313 Sum_probs=266.0
Q ss_pred EEEEEECCCC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 111 V~~~~~sp~~--~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
|+++ +||.- ..++.|+.+|.+++|++++++.+..++++...|+++.=+|-=..++.|..+|+|.+++++.++.+...
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 5443 56653 45788999999999999999999999999999999999998889999999999999999988865432
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w 266 (473)
....+.|+.++|.-. ....+++++..|.+.+||++..+.+..+. .|...|..+.|-+.. .+++++.|+.+++|
T Consensus 241 -k~d~g~VtslSFrtD----G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 241 -KQDWGRVTSLSFRTD----GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred -EccccceeEEEeccC----CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 222488999998742 22467888889999999999988876655 788888888887655 78899999999987
Q ss_pred ECC--CC--ceeeeeeccCceEEEEEeccc--ceeeeccccCCCcccCCHHHHHHHHHhhh---------h---cccC--
Q 011978 267 ETT--QG--KLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERY---------N---KIKG-- 326 (473)
Q Consensus 267 d~~--~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~-- 326 (473)
=.. .| +.++.-.+|..+-.++.+... ..+.....|.+-+.+....+.....+... + ...-
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 544 33 566777888888888876532 23333444444444433322222211110 0 0000
Q ss_pred -------------CC-CceEEEecCCceEEEEeCCCCCCCeeee-----cCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978 327 -------------NA-PERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (473)
Q Consensus 327 -------------~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw 387 (473)
.. .+.+...-.+..++.|+..........+ ......+++++.++.|++.+.|...|+|.+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 00 1123344456678889876543322211 2234568999999999999999999999999
Q ss_pred eCCCCceEEEe---eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----------------------------
Q 011978 388 NGTTGKFVAVF---RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL---------------------------- 436 (473)
Q Consensus 388 d~~~~~~~~~~---~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~---------------------------- 436 (473)
++++|-....| ..|.++|++++...-++.+++++.||-++.||...+..
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 99999888787 58999999999988889999999999999998765431
Q ss_pred -------------eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 437 -------------KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 437 -------------~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...+.||.++|++++|||||+||++++.|++|++|+
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 123458999999999999999999999999999997
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=207.70 Aligned_cols=281 Identities=20% Similarity=0.333 Sum_probs=240.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
..+.++...|....+.+|+.|..+.++|...++.+..++||...|..+.|+|+...+++++.|..|++|....... ...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-ccc
Confidence 5688888888878899999999999999999998899999999999999999999999999999999998765542 234
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC--ccccEEEEEecCCCe-EEEeecCCeEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGV-IYTGSQDCTIKV 265 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~-l~s~~~d~~i~~ 265 (473)
...|..+|+.+..+| .+.+|++++.|+...+.|++++.++..... ....+++.+|+|||. +.+|..|+.+++
T Consensus 299 ~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 677999999988766 568999999999999999999988765543 334689999999996 558999999999
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
||+.++..+..|.+|..+|..+.|+.++ ..++++++|+.+++||
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENG------------------------------------Y~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENG------------------------------------YWLATAADDGSVKLWD 417 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCc------------------------------------eEEEEEecCCeEEEEE
Confidence 9999999999999999999999998764 3489999999999999
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC--CCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT--TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~--~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
++..+..+.........+.++.|.+.|.+|+.++.|=.|++++-. +..++..+..|.+..+.+.|..+.++++++|.|
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence 988776655555555579999999999999999887566665533 455677788899999999999999999999999
Q ss_pred CcEEEEEC
Q 011978 424 STLKVWDI 431 (473)
Q Consensus 424 g~i~iwd~ 431 (473)
..++++-+
T Consensus 498 ~~l~~~a~ 505 (506)
T KOG0289|consen 498 AILRLYAL 505 (506)
T ss_pred hheEEeec
Confidence 99888754
No 95
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.5e-27 Score=226.14 Aligned_cols=228 Identities=20% Similarity=0.303 Sum_probs=179.3
Q ss_pred cccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCe
Q 011978 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE 173 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~ 173 (473)
.+.||.+.|++++|+| ++++||+|+.|++|++||+.++ .++..+.+|...|.+++|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999764 3456788999999999999985 68999999999
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-EEEEecCCC
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-TCVKWGGDG 252 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~ 252 (473)
|++||+++++... .+.+|...|.++.|+| ++..+++++.|++|++||+++++.+..+.+|...+ ..+.|.+++
T Consensus 150 VrIWDl~tg~~~~-~l~~h~~~V~sla~sp-----dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 150 VNVWDVERGKAVE-VIKCHSDQITSLEWNL-----DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEEECCCCeEEE-EEcCCCCceEEEEEEC-----CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence 9999999886543 4678999999999987 45689999999999999999999988888887653 456677654
Q ss_pred -eEEEee----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978 253 -VIYTGS----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (473)
Q Consensus 253 -~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
.+++++ .|+.|++||+++........
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~------------------------------------------------- 254 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTV------------------------------------------------- 254 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEe-------------------------------------------------
Confidence 555543 47889999986532110000
Q ss_pred CCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC-CccCE
Q 011978 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG-HVGPV 405 (473)
Q Consensus 328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~-h~~~v 405 (473)
+ ..+...+....|++++++|++|+ .|+.|++||+.+++++..... +..++
T Consensus 255 -----------------~-----------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 255 -----------------D-----------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred -----------------c-----------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 0 00112344567899999999887 599999999999987766543 44567
Q ss_pred EEEEEecC
Q 011978 406 YQISWSAD 413 (473)
Q Consensus 406 ~~v~~sp~ 413 (473)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 78888874
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.3e-29 Score=227.48 Aligned_cols=236 Identities=23% Similarity=0.457 Sum_probs=197.5
Q ss_pred CCCCeEEEEecCCeEEEeeCCCCcc-----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eE
Q 011978 160 ADGKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC 232 (473)
Q Consensus 160 ~dg~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~ 232 (473)
|.+++|++|+.||.|++|+...... -...++.|.++|+.+.... .++.|+++|.|-+|++|+...+ -|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-----~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-----NGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-----CCCceEEecCCceEEEeecccCcchh
Confidence 4677899999999999999765332 1234678999998875332 3458999999999999999877 67
Q ss_pred EEEecCccccEEEEEe-cCCC-eEEEeecCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 233 VICLSGHTLAVTCVKW-GGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~-~~~~-~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
+.++..|...|.|+++ .++. .+++|+-|+.|.+||+.++.. +.++..
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----------------------------- 160 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----------------------------- 160 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----------------------------
Confidence 8888999999999999 4544 688999999999999987632 211110
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
+ .......|+...|.++|.++.|..|++|+..+.+++||
T Consensus 161 -----------------------~------------------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 161 -----------------------V------------------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred -----------------------c------------------ccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 0 00001116677899999999999999999999999999
Q ss_pred CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
.++++.+..++||+..|..+..++||+.++++|.||+|++||+..++++.++..|.+.|+++..+|+=+++.+|+.|+.|
T Consensus 200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ee
Q 011978 469 KL 470 (473)
Q Consensus 469 ~~ 470 (473)
..
T Consensus 280 ~~ 281 (735)
T KOG0308|consen 280 YR 281 (735)
T ss_pred Ee
Confidence 53
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=225.48 Aligned_cols=277 Identities=22% Similarity=0.406 Sum_probs=209.9
Q ss_pred EEEEC-CCCCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-c
Q 011978 113 SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P 184 (473)
Q Consensus 113 ~~~~s-p~~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~ 184 (473)
.+..+ |.+++|+||+.||.|++|++.... ...++..|.+||..+....+|+.|++++.|-+|++|+...+. .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 456779999999999999985422 255678899999999999999999999999999999987663 1
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--EE--------Eec-CccccEEEEEecCCCe
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--VI--------CLS-GHTLAVTCVKWGGDGV 253 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--~~--------~~~-~h~~~v~~~~~~~~~~ 253 (473)
-...+..|++.|.++++.. .....+++||-|+.|.+||+.++.. +. .+. |+...|.+++-++.|.
T Consensus 109 c~stir~H~DYVkcla~~a----k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIA----KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred hHhhhhcccchheeeeecc----cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 1234678999999998732 2446899999999999999987632 11 112 5555566666555553
Q ss_pred -EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 254 -IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 254 -l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+++|+..+.+++||-++++.+
T Consensus 185 ~ivsGgtek~lr~wDprt~~ki---------------------------------------------------------- 206 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKI---------------------------------------------------------- 206 (735)
T ss_pred EEEecCcccceEEeccccccce----------------------------------------------------------
Confidence 445555555566655443322
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp 412 (473)
.++.||...|.++..++||+.++++|.||+|++||+...+++.++..|...|+++..+|
T Consensus 207 ---------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 207 ---------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ---------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 23457888899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 413 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+=.++++|+.||.|+.=|+++......+-....+|..+..+.+.+-+=+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999999999988544333333445566666664444446667777788775
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.4e-27 Score=203.79 Aligned_cols=279 Identities=20% Similarity=0.282 Sum_probs=237.4
Q ss_pred CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 151 ~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
..+.++...|....+++|+.|..+.++|...++.+ ..+.||...|+.+.++|. ....++++.|..|++|.....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~-----~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKD-----LDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccc-----hhheeecCCcceEEeeccccc
Confidence 45888888887789999999999999998876644 468999999999998874 357889999999999999988
Q ss_pred eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeec--cCceEEEEEecccceeeeccccCCCccc
Q 011978 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQY 307 (473)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (473)
.+......|..+|+.+..++.| ++++++.|++..+.|.++|..+..... .+..+.+.+++|+..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL------------- 360 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL------------- 360 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-------------
Confidence 8888888999999999999887 799999999999999999988766544 344577788887743
Q ss_pred CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw 387 (473)
.+.+|..|+.+++||+.... ...++.+|.+.|..++|+.+|-|||++..|+.|++|
T Consensus 361 -----------------------ifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 361 -----------------------IFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred -----------------------EEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 47789999999999987655 667889999999999999999999999999999999
Q ss_pred eCCCCceEEEeeCCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 388 NGTTGKFVAVFRGHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 388 d~~~~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
|++..+...++.... .+|.++.|.+.|.+|+.++.|=.|++++-. ....+..+..|.+..+.+.|..+.++++++|.
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 999888777765432 369999999999999999887666666633 35567778888888999999999999999999
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
|..++++.
T Consensus 497 d~~l~~~a 504 (506)
T KOG0289|consen 497 DAILRLYA 504 (506)
T ss_pred hhheEEee
Confidence 99998864
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.8e-28 Score=211.51 Aligned_cols=243 Identities=26% Similarity=0.477 Sum_probs=197.9
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----------EEEEecCccccEEEEEecC--CCeEEEee
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----------CVICLSGHTLAVTCVKWGG--DGVIYTGS 258 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~--~~~l~s~~ 258 (473)
.|.+.|+.+.+.|.. ...+++.+..+.+.|||..... .-..+.||...-..++|+. .+.+++++
T Consensus 122 ~h~gEVnRaRymPQn----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQN----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCC----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 477888888888854 3478888999999999975421 1236778988778899986 46899999
Q ss_pred cCCeEEEEECCCCce-------eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 259 QDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
.|++|.+||+..... ...+.+|+..|..+++++. ....
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-----------------------------------h~~l 242 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-----------------------------------HEDL 242 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-----------------------------------chhh
Confidence 999999999865432 3456788888888877653 2346
Q ss_pred EEEecCCceEEEEeCCC-CCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEE
Q 011978 332 LVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQI 408 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v 408 (473)
+.++++|+.+.|||.+. ...+.....+|...++|++|+| ++..||+||.|++|++||+++. +++.++.+|...|.+|
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV 322 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE
Confidence 88999999999999986 4455566788999999999999 6678999999999999999975 4688999999999999
Q ss_pred EEecCC-CEEEEEeCCCcEEEEECCC-C-------------ceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEecc
Q 011978 409 SWSADS-RLLLSGSKDSTLKVWDIRT-Q-------------KLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLWM 472 (473)
Q Consensus 409 ~~sp~g-~~l~s~s~Dg~i~iwd~~~-~-------------~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w~ 472 (473)
.|||+. ..||+++.|+.+.+||+.. + +++..-.||...|..++|+|...++ +|++.|+.+.||+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 999964 6899999999999999864 1 1234456899999999999998765 7899999999996
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.2e-28 Score=204.77 Aligned_cols=239 Identities=27% Similarity=0.490 Sum_probs=196.8
Q ss_pred CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc-------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
...-+.|..|||||++|++|+.||.|.+||..+|+... ..+--+...|.++.|+. +...+++|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-----DsEMlAsGsqDGk 286 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-----DSEMLASGSQDGK 286 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-----cHHHhhccCcCCc
Confidence 34558899999999999999999999999999887432 12345677888888765 5678999999999
Q ss_pred EEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 222 ARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 222 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
|++|.+.+|.|+..+. .|+..|+|+.|+.|+ .+++++.|.++++--+.+|++++.+++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-------------------- 346 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-------------------- 346 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--------------------
Confidence 9999999999998886 899999999999887 699999999999988888877665544
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs 379 (473)
|...|+...|++||.+++++|
T Consensus 347 -----------------------------------------------------------HsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 347 -----------------------------------------------------------HSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -----------------------------------------------------------ccccccceEEcCCCCeEEEec
Confidence 455567778999999999999
Q ss_pred CCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeccccc---CCCEEEEEEe
Q 011978 380 FDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKLKQDLPGH---ADEVFAVDWS 453 (473)
Q Consensus 380 ~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h---~~~i~~l~~s 453 (473)
.||+|++|+..+++|+.+|+. ...+|+++..-|. ..+++.+...++|+|-++..+ ....+... .+.-.+...|
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEEEEec
Confidence 999999999999999998874 3457888888774 467888989999999998754 33443321 2334466789
Q ss_pred eCCCEEEEEeCCCcEEecc
Q 011978 454 PDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 454 ~d~~~l~s~~~D~~i~~w~ 472 (473)
|.|.++.+.+.|+.+..|.
T Consensus 447 pkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred CCCcEEEEEccCcEEEEEE
Confidence 9999999999999998874
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=194.99 Aligned_cols=294 Identities=21% Similarity=0.330 Sum_probs=199.9
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEECCCCCeEEE-EecCCeE
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGEL 174 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i 174 (473)
...|.||.+.|++++|+.||+.|||++.|++|+||++.... .+...- .-+--+.+.|+||-+-++. +-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 46789999999999999999999999999999999987532 111110 1123567899999775554 4455679
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-e
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V 253 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 253 (473)
++|.....+.- ......+.|...++ -..|...+-.+-...++ +
T Consensus 158 ~vyk~~K~~dG-------~~~~~~v~~D~~~f-----------------------------~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 158 CVYKLVKKTDG-------SGSHHFVHIDNLEF-----------------------------ERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred EEEEeeecccC-------CCCccccccccccc-----------------------------chhcccceEEEeecCCceE
Confidence 99976432210 00111111111111 11244444444444445 5
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
|++++.|..|.+|+++ |+.+..+......-...+++|+ ...++
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~------------------------------------GRFia 244 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD------------------------------------GRFIA 244 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC------------------------------------CcEEE
Confidence 8899999999999998 8877766543333333444444 23467
Q ss_pred EecCCceEEEEeCCCCC-------CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----C---ceEEEee
Q 011978 334 SGSDDFTMFLWEPAVSK-------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----G---KFVAVFR 399 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----~---~~~~~~~ 399 (473)
+++.--.+++|++--.+ .....+.||+..|..++|+|+.+.+++.|.||++++||..- + +.+.+..
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~ 324 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS 324 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC
Confidence 77777778899864332 12345789999999999999999999999999999999652 1 2222221
Q ss_pred ----CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 400 ----GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 400 ----~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
...+.-..++.||.|+.||.+. ...+++|..++++...++ ..|...|.+++|++||++++++|.- .+++
T Consensus 325 ~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv 398 (420)
T KOG2096|consen 325 APLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRV 398 (420)
T ss_pred cchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeee
Confidence 1122334899999999888654 457999999988766544 3588899999999999999998764 4444
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=210.40 Aligned_cols=246 Identities=24% Similarity=0.506 Sum_probs=199.8
Q ss_pred CCcccEEEEEECCCCCe-EEEEeCCCeEEEEeCCCC----------ceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCe
Q 011978 106 GHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGE 173 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~ 173 (473)
-|.+.|+.++.-|+... +|+.+..+.|.|||..+. .|-..+.+|++.-..|+|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 48899999999998765 567788899999998543 223467899987788999985 347999999999
Q ss_pred EEEeeCCCCcc------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC--CCeEEEEecCccccEEE
Q 011978 174 LQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTC 245 (473)
Q Consensus 174 i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~ 245 (473)
|.+||++.... ....+.+|...|..++|++.+- ..|++++.|+.+.|||++ +.+......+|.+.|.|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~----~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE----DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccch----hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 99999875432 2234689999999999999654 479999999999999999 56666777899999999
Q ss_pred EEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 246 VKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 246 ~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
++|++-+ +|++|+.|++|++||+++-+
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------------------- 306 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLN--------------------------------------------------- 306 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcc---------------------------------------------------
Confidence 9999743 67888889999999876521
Q ss_pred ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCC-----------
Q 011978 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT----------- 391 (473)
Q Consensus 324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~----------- 391 (473)
.+...+.+|...|.+|.|||+ ...||+++.|+.+.+||+..
T Consensus 307 ---------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 307 ---------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred ---------------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 233445678889999999995 56889999999999999863
Q ss_pred ---CceEEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 011978 392 ---GKFVAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 392 ---~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~ 433 (473)
.+++.+-.||.+.|..+.|+|+.. .|+|++.|+.+.||++..
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 134567789999999999999765 588899999999999864
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=209.84 Aligned_cols=245 Identities=27% Similarity=0.420 Sum_probs=202.2
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCC
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~ 182 (473)
+.--.+.|.++.|-.||++||+|...|.|+|||+++...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 34456889999999999999999999999999977766667788999999999999964 56678888999999999988
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEEeecCC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~ 261 (473)
.. ...+.+|++.|.+.+|.|.. ...++|||.||+|++||++.. ..+..+ .|..+|..+.+-|.|.+++.....
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~----~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPAN----DHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred EE-EEEecCCcceeEeeccccCC----CeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC
Confidence 75 44689999999999999853 357999999999999999887 444444 588899999998887655555567
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.+++||+.+|...
T Consensus 218 ~vkVWDl~~G~ql------------------------------------------------------------------- 230 (487)
T KOG0310|consen 218 SVKVWDLTTGGQL------------------------------------------------------------------- 230 (487)
T ss_pred eEEEEEecCCcee-------------------------------------------------------------------
Confidence 8999998755321
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
...+..|...|+|+++..++..|++|+.|+.|++||+.+-+.+..+. -.++|.+++.+||++.++.|-
T Consensus 231 -----------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 231 -----------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred -----------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec
Confidence 11223477789999999999999999999999999988888888776 467999999999999999999
Q ss_pred CCCcEEEEECCC
Q 011978 422 KDSTLKVWDIRT 433 (473)
Q Consensus 422 ~Dg~i~iwd~~~ 433 (473)
.||.+-+=+...
T Consensus 299 snGlv~~rr~~~ 310 (487)
T KOG0310|consen 299 SNGLVSIRRREV 310 (487)
T ss_pred ccceeeeehhhc
Confidence 999887664433
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1e-26 Score=193.25 Aligned_cols=298 Identities=24% Similarity=0.375 Sum_probs=223.7
Q ss_pred cCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCce--------eEE-------EcCCCCCEEEEEECC-CCCeEEE
Q 011978 105 AGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTP--------MFK-------CTGHKNWVLCIAWSA-DGKHLVS 167 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~~--------~~~-------~~~~~~~v~~l~~s~-dg~~l~s 167 (473)
..|.+.|+++.+.+. |+++++|+.||.|.+||++.... ... -.+|...|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 348999999999885 88999999999999999975320 111 136788899999998 5557778
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (473)
++.|.++++||.++.+.... ..-.+.|.+-+++|.... -..+++|..+-.|++.|+..|.+...+.||...|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~s--HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMS--HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceeeEE--eecCceeehhhcChhhhc--ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 99999999999987654321 223455677777775432 24677888899999999999999999999999999999
Q ss_pred ecCCC--eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978 248 WGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (473)
Q Consensus 248 ~~~~~--~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
|+|.. .|++|+.||.|++||++.. .+.+.+..|...
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k----------------------------------------- 234 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK----------------------------------------- 234 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-----------------------------------------
Confidence 99865 5889999999999998754 333333322110
Q ss_pred cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-EEee--CC
Q 011978 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFR--GH 401 (473)
Q Consensus 325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-~~~~--~h 401 (473)
..+..+.-..|.+.++.++|+.+|.++++.+.|..+++|+..+|+.. ..+. .|
T Consensus 235 ------------------------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~ 290 (397)
T KOG4283|consen 235 ------------------------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH 290 (397)
T ss_pred ------------------------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc
Confidence 00111123467888999999999999999999999999999887532 1110 11
Q ss_pred c---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 402 V---GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 402 ~---~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+ ++-.-+. +.+...++--=.|+.+.++++-++..+..+.+|...|.+..+.|+=+...+++.|+.|..|.
T Consensus 291 n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 291 NQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 1 1111122 33333444444568899999999999999999999999999999999999999999998884
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-26 Score=190.70 Aligned_cols=241 Identities=19% Similarity=0.273 Sum_probs=189.8
Q ss_pred EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC--CCcEE
Q 011978 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDAR 223 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~ 223 (473)
+......|.++.|+++|.++++++.|.++++||..+++.... +..++-.+..+.|-. ....++.++. |.+||
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-i~skkyG~~~~~Fth-----~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-INSKKYGVDLACFTH-----HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-eecccccccEEEEec-----CCceEEEccCCCCCceE
Confidence 344567799999999999999999999999999999887653 333333444444432 1234444444 88999
Q ss_pred EEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
..++.+++.+..+.||...|.+++.+|-+ .+++++.|++|++||++..++...+..
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------------------- 140 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------------------- 140 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------------------
Confidence 99999999999999999999999999854 789999999999999986544322110
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
..-..+||+|.|-++|++....
T Consensus 141 ----------------------------------------------------------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 141 ----------------------------------------------------------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred ----------------------------------------------------------CCCcceeECCCCcEEEEecCCC
Confidence 0112468999999999999888
Q ss_pred cEEEEeCCCC--ceEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE---EEEEEee
Q 011978 383 SIKLWNGTTG--KFVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV---FAVDWSP 454 (473)
Q Consensus 383 ~v~lwd~~~~--~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i---~~l~~s~ 454 (473)
.|++||++.- .+..++. +.....+.+.|||||++|+.+...+.+++.|.-+|..+.++.++...- ....|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999853 2333333 346678999999999999999999999999999999888877765422 5678999
Q ss_pred CCCEEEEEeCCCcEEeccC
Q 011978 455 DGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 455 d~~~l~s~~~D~~i~~w~~ 473 (473)
|++++.+|+.||+|.+|++
T Consensus 243 ds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCcEEEEecCCCcEEEEEc
Confidence 9999999999999999974
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.8e-27 Score=213.40 Aligned_cols=289 Identities=22% Similarity=0.378 Sum_probs=227.2
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCe-EEEEecCCeEEE
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKAGELQC 176 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~-l~s~~~dg~i~i 176 (473)
..|...+.||++.|.+++.+|.|.+||+|+.||+||||.+.|+.++..+. ....|.|++|+|.+.. +++++....+.|
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 45667789999999999999999999999999999999999999987765 3457999999997653 333344444555
Q ss_pred eeCCCCcccc------------------------------------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-
Q 011978 177 WDPQTGKPSG------------------------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKD- 219 (473)
Q Consensus 177 wd~~~~~~~~------------------------------------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d- 219 (473)
-+..-|..+. ...-.|.+.|..+.|+. .+.+|++...+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~~ 543 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPDS 543 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccCC
Confidence 5543221000 01123556667777765 56788876543
Q ss_pred --CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978 220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (473)
Q Consensus 220 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (473)
..|.|+++..++...-|..-.+.|.++.|.|.. +++.+ .-..|++||+..+.+++.+.....+|..+++++.
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~---- 618 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN---- 618 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC----
Confidence 578889988777666565556678999999876 44444 4578999999988888888777788888888764
Q ss_pred eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEE
Q 011978 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~la 376 (473)
.+.++.++.|+.+.++|+..+..+..++.-|...+++|+|++.-.++|
T Consensus 619 --------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa 666 (733)
T KOG0650|consen 619 --------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA 666 (733)
T ss_pred --------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence 457999999999999999988888899999999999999999999999
Q ss_pred EEECCCcEEEEeCC------C-C--ceEEEeeCCccC----EEEEEEecCCCEEEEEeCCCcEEEE
Q 011978 377 SASFDKSIKLWNGT------T-G--KFVAVFRGHVGP----VYQISWSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 377 sgs~d~~v~lwd~~------~-~--~~~~~~~~h~~~----v~~v~~sp~g~~l~s~s~Dg~i~iw 429 (473)
+|+.||++.|+... . . -++..+++|... |.++.|+|...+|++++.||+|++|
T Consensus 667 s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999998532 1 1 245677888654 9999999999999999999999998
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=192.47 Aligned_cols=242 Identities=22% Similarity=0.369 Sum_probs=190.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eEEEEecCCeEEEeeCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~i~iwd~~ 180 (473)
.+..|.++|+++|. ++.++|+||.|-+|+|||+.+..++..+..|.+.|+++.|.++-. +|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 45679999999999 589999999999999999999988888889999999999998765 89999999999999987
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d 260 (473)
.-... ..+.+|.+.|+.++.+| .+..-++.+.|+.+++||+-.++.-..++-. ..-+.+.|++.|--++-+.-
T Consensus 116 ~W~~~-~slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELL-KSLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEe-eeecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEec
Confidence 66443 35788999999999888 4456788999999999999887765544321 12234889888753333333
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
..|-+|.+.+.+....+.
T Consensus 189 ~~i~i~q~d~A~v~~~i~-------------------------------------------------------------- 206 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIE-------------------------------------------------------------- 206 (362)
T ss_pred cEEEEEecccHhHhhhhh--------------------------------------------------------------
Confidence 456677655433222110
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE--ecCCCEEE
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW--SADSRLLL 418 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~--sp~g~~l~ 418 (473)
.+..+.++.|- ++.+|++|+.|+.|++||..+..+...+.+|...|-++.+ .|++.+|+
T Consensus 207 ------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 207 ------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred ------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence 00123344443 5778999999999999999999999999999999999984 56789999
Q ss_pred EEeCCCcEEEEECCCC
Q 011978 419 SGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~ 434 (473)
++|.||.|++||++..
T Consensus 268 TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCceEEEEEcccc
Confidence 9999999999999764
No 108
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5.4e-26 Score=217.88 Aligned_cols=220 Identities=17% Similarity=0.251 Sum_probs=174.4
Q ss_pred eeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCc--------eeeeeeccCceEE
Q 011978 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGK--------LIRELKGHGHWVN 285 (473)
Q Consensus 216 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~ 285 (473)
|+.++.+++|+......+..+.+|...|.+++|+++ ..|++|+.|++|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556788999998887888889999999999999985 479999999999999998642 2345678888899
Q ss_pred EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (473)
+++++|.. ...+++++.|+++++||+....... .+ .|...|.+
T Consensus 130 sVaf~P~g-----------------------------------~~iLaSgS~DgtIrIWDl~tg~~~~-~i-~~~~~V~S 172 (568)
T PTZ00420 130 IIDWNPMN-----------------------------------YYIMCSSGFDSFVNIWDIENEKRAF-QI-NMPKKLSS 172 (568)
T ss_pred EEEECCCC-----------------------------------CeEEEEEeCCCeEEEEECCCCcEEE-EE-ecCCcEEE
Confidence 99888752 1246789999999999987654322 22 35567999
Q ss_pred EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE-----EEEecCCCEEEEEeCCC----cEEEEECCC-Cc
Q 011978 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ-----ISWSADSRLLLSGSKDS----TLKVWDIRT-QK 435 (473)
Q Consensus 366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~-----v~~sp~g~~l~s~s~Dg----~i~iwd~~~-~~ 435 (473)
++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+.. ..|++++.+|++++.|+ .|+|||++. .+
T Consensus 173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 999999999999999999999999999999999999886543 33568999999988774 799999985 44
Q ss_pred eeecc--cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 436 LKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 436 ~~~~~--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+..+ ..+...+......++|.++++|+.|+.|++|.
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 44433 33334444444456689999999999999995
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=191.02 Aligned_cols=242 Identities=21% Similarity=0.342 Sum_probs=197.4
Q ss_pred eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
+++.+..|.+.+++++.+ |.++++|+.|-+|+|||+.+..... .+..|.+.|+++.|.+.. ....+++|+.||.
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-~ll~HagsitaL~F~~~~---S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-ILLSHAGSITALKFYPPL---SKSHLLSGSDDGH 108 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-ceeccccceEEEEecCCc---chhheeeecCCCc
Confidence 466778999999999985 8999999999999999998776554 466789999999987632 1237999999999
Q ss_pred EEEEECCCCeEEEEecCccccEEEEEecCCCeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
|.+|+.....++..+++|...|+.++.+|.+.| ++.+.|+.+++|++.+|+.-..++.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--------------------- 167 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--------------------- 167 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc---------------------
Confidence 999999999999999999999999999999865 5789999999999987764221100
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~ 380 (473)
......|.|+|.|.+++.++.
T Consensus 168 -----------------------------------------------------------~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 168 -----------------------------------------------------------KNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred -----------------------------------------------------------CCcceeeEEcCCCCEEEEEec
Confidence 001223789999999988887
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE--eeCCCE
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEK 458 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~--s~d~~~ 458 (473)
+ .|-+|.+.+.+....+... -.+.++.|- ++..|++|..|+.|.+||-.+......+.+|..+|-++.+ .|++.+
T Consensus 189 ~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY 265 (362)
T ss_pred c-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence 6 4899988877655444322 346666664 5678999999999999999998888899999999988873 567889
Q ss_pred EEEEeCCCcEEecc
Q 011978 459 VASGGKDRVLKLWM 472 (473)
Q Consensus 459 l~s~~~D~~i~~w~ 472 (473)
|+|+|+||.|++|+
T Consensus 266 lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 266 LVTASSDGFIKVWD 279 (362)
T ss_pred EEEeccCceEEEEE
Confidence 99999999999997
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=7.5e-27 Score=207.29 Aligned_cols=280 Identities=20% Similarity=0.417 Sum_probs=223.1
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC---ceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~---~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
..|..-|-++.+|...++++||+ .|.|+|||+... .++..+ ....+.|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 35888999999999999999985 578999998643 233333 334678999999999999999999999999998
Q ss_pred CCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEe
Q 011978 180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG 257 (473)
Q Consensus 180 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~ 257 (473)
..-... ...+....-...+++ .+++.+...+|..||.|.|||+.+...+..+.||...+.|+..+.||. |.+|
T Consensus 495 AapTprikaeltssapaCyALa-----~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALA-----ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhh-----cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence 754321 111111111222333 344667788899999999999999999999999999999999999995 9999
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+-|+++|-||+++++.+.+..
T Consensus 570 GlDntvRcWDlregrqlqqhd----------------------------------------------------------- 590 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD----------------------------------------------------------- 590 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence 999999999999876443210
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
....|.++-++|++.+||.|-..+.+.|-..... ..+.+.-|...|.++.|++-|+++
T Consensus 591 ---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 591 ---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ---------------------hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence 0134677888999999999999999988876543 345556689999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++.+.|+.+..|...-|..+...+ ..+.|++++.|.|.+++++|+.|+...||.
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 999999999999887777666655 457899999999999999999998887764
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=212.09 Aligned_cols=289 Identities=25% Similarity=0.349 Sum_probs=224.0
Q ss_pred cCCcccEEEEEECCC-----------CCeEEEEeCCCeEEEEeCCCCce--e----------------------------
Q 011978 105 AGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQTP--M---------------------------- 143 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~-----------~~~lat~s~d~~i~iwd~~~~~~--~---------------------------- 143 (473)
.-|+..|+.+.--|- ..-+.|++.|++||+||+..... +
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 358888888876551 12478999999999999864210 0
Q ss_pred --E-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978 144 --F-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (473)
Q Consensus 144 --~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~ 216 (473)
+ ..-+....+.+++.||+|++|++|..-|++++|+++.-+... .+..|...|.++.|+-... ....++++
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLLASa 522 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLLASA 522 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhhhhc
Confidence 0 001224579999999999999999999999999998766443 5788999999999875333 23578999
Q ss_pred eCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC---eEEEeecCCeEEEEECCCCceeeeeeccC-----ceEEEE
Q 011978 217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHG-----HWVNSL 287 (473)
Q Consensus 217 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~ 287 (473)
+.|+.|.++|+... ..+.++.+|...|+++.|..+| .+++++.|+.|.+--.+.......+..|. ..+..+
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 99999999998754 4556788999999999997665 58999999988654333221122222221 223444
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee--cCcccceeE
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNH 365 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~ 365 (473)
++.|. ...+++++.|+.|+||++..+++.+... .+|.+..-.
T Consensus 603 ~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 603 AVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred eeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 44332 3468999999999999998877655443 345567778
Q ss_pred EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
+...|.|-|||+...|+++.++|+.+|+++....||...|+.+.|++|.++|++.+.||.|.||.+.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.6e-25 Score=204.94 Aligned_cols=365 Identities=24% Similarity=0.415 Sum_probs=249.3
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-------EEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-------KCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
+.+.||.+.|.++.|+|.+..|.++|.|+++.+|......-+. ...+...+.....|+|++..+++-++.|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 4456999999999999999999999999999999876543221 223445678899999999999999999999
Q ss_pred EEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC----eEEEEecCccccEEEEEe
Q 011978 175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKW 248 (473)
Q Consensus 175 ~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~ 248 (473)
++|..++.. .....+.||.+.|..+.|.| .+.++++.|.|.+-|++-.-.+ ..+..-.-|...++|+++
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-----sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-----SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecC-----CCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 999833221 22335789999999999998 4578999999999999865411 122222347778899998
Q ss_pred cC-CCeEEEeecCCeEEEEECCCCce--e----e-eeecc-----CceEEEEEeccccee----eeccc----------c
Q 011978 249 GG-DGVIYTGSQDCTIKVWETTQGKL--I----R-ELKGH-----GHWVNSLALSTEYAL----RTGAF----------D 301 (473)
Q Consensus 249 ~~-~~~l~s~~~d~~i~~wd~~~~~~--~----~-~~~~~-----~~~v~~~~~~~~~~~----~~~~~----------~ 301 (473)
-+ +-.+++|....-+|+|+....-. + . ...+. +..|..+..+..... ..+.. +
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 76 55788999999999998764310 0 0 11111 111222222211111 00110 0
Q ss_pred CCCcccCCH-HHHHHHH--Hhhhhccc-----------CCCCceEEEecCCc-----eEEEEeCCCCCCCeeeecCcccc
Q 011978 302 HTGKQYSSP-EEMKKAA--LERYNKIK-----------GNAPERLVSGSDDF-----TMFLWEPAVSKQPKTRMTGHQQL 362 (473)
Q Consensus 302 ~~~~~~~~~-~~~~~~~--~~~~~~~~-----------~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~ 362 (473)
.......+| ++..... .....+.. ....+.+++++... .|++|+.....+.. .+.+|+-.
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLT 574 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLT 574 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceE
Confidence 000111111 1111111 11111111 22345566665543 48899977665443 78899999
Q ss_pred eeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ce
Q 011978 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ--KL 436 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~--~~ 436 (473)
|+.++|||||++|++.|.|+++.+|....... ....+.|+.-|++..|+|++.++||+|.|.+|++|..... +.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 99999999999999999999999998754321 2336789999999999999999999999999999998766 33
Q ss_pred ee--cccccCCCEEEEEEeeC-----CCEEEEEeCCCcEEecc
Q 011978 437 KQ--DLPGHADEVFAVDWSPD-----GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 437 ~~--~~~~h~~~i~~l~~s~d-----~~~l~s~~~D~~i~~w~ 472 (473)
+. ....+...|++++|.|- +..++.|-..|.|.+|.
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 32 23357788999988753 22567777889999986
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.4e-24 Score=189.96 Aligned_cols=278 Identities=21% Similarity=0.360 Sum_probs=204.9
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE---EcCC-CCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK---CTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~---~~~~-~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
......+.|....|+|.+..|+...+.+.+.+|+++++..... +..+ ...|.|++|.++|+ +++|..+|.|.||+
T Consensus 195 ~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS 273 (626)
T ss_pred cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence 3344556788999999999888888899999999987653322 2222 36799999999985 88999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--------------------------
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-------------------------- 232 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-------------------------- 232 (473)
..+.+...+.. .|.+.|.++.... ...+++|+.|+.|..||-.-.+.
T Consensus 274 ~~~~~~~k~~~-aH~ggv~~L~~lr------~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT 346 (626)
T KOG2106|consen 274 KGTNRISKQVH-AHDGGVFSLCMLR------DGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGT 346 (626)
T ss_pred CCCceEEeEee-ecCCceEEEEEec------CccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEee
Confidence 97776665555 9999999887543 35788999999999998321110
Q ss_pred --------------EEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978 233 --------------VICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 233 --------------~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (473)
.....+|......++..++. ++++++.|+.+++|+ ..++..+. .-..+..+++++|.
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps----- 418 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS----- 418 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc-----
Confidence 01123566666777777654 789999999999998 33443332 22344556666553
Q ss_pred ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
..++.|...|...+.|..... ....... ..++++++|+|+|.+||.
T Consensus 419 --------------------------------g~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 419 --------------------------------GVVAVGTATGRWFVLDTETQD-LVTIHTD-NEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred --------------------------------ceEEEeeccceEEEEecccce-eEEEEec-CCceEEEEEcCCCCEEEE
Confidence 257888888999998876532 2222223 678999999999999999
Q ss_pred EECCCcEEEEeCCCC-ceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 378 ASFDKSIKLWNGTTG-KFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 378 gs~d~~v~lwd~~~~-~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
|+.|+.|++|.+... ....... -|..+|+.+.||+|+++|.+-|.|-.|..|.
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999987644 3333222 2347999999999999999999999999994
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-25 Score=185.66 Aligned_cols=262 Identities=23% Similarity=0.426 Sum_probs=189.9
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEe
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iw 177 (473)
..+|.+-|.++.|.+-|+++|+|+.|++|+|||.+... .....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 36899999999999999999999999999999975443 3445678999999999975 48999999999999999
Q ss_pred eCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-e
Q 011978 178 DPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-V 253 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~ 253 (473)
.-+... +..|. .++. ..++......|+.+.|.|. | .
T Consensus 89 EE~~~~-----~~~~~~~Wv~-----------------------------------~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 89 EEQEKS-----EEAHGRRWVR-----------------------------------RTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eecccc-----cccccceeEE-----------------------------------EEEeecCCcceeEEEecchhcceE
Confidence 754211 12221 1111 1123334567888999875 3 4
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+++++.||.+|||+...--.+....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~------------------------------------------------------- 153 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWT------------------------------------------------------- 153 (361)
T ss_pred EEEeccCcEEEEEecCCccccccch-------------------------------------------------------
Confidence 8899999999999875432211110
Q ss_pred EecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCC---CcEEEEEECC-----CcEEEEeCCCC----ceEEEeeC
Q 011978 334 SGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPD---GQWVASASFD-----KSIKLWNGTTG----KFVAVFRG 400 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~---g~~lasgs~d-----~~v~lwd~~~~----~~~~~~~~ 400 (473)
+....+ .......+.....|+.|+|. .++||.|+.+ +.++||....+ ..+..+.+
T Consensus 154 ------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 154 ------------LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ------------hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 000000 00001123344567788873 5689988876 47889976543 24566789
Q ss_pred CccCEEEEEEecCC----CEEEEEeCCCcEEEEECCCC--------------------ceeecccccCCCEEEEEEeeCC
Q 011978 401 HVGPVYQISWSADS----RLLLSGSKDSTLKVWDIRTQ--------------------KLKQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 401 h~~~v~~v~~sp~g----~~l~s~s~Dg~i~iwd~~~~--------------------~~~~~~~~h~~~i~~l~~s~d~ 456 (473)
|..+|++++|.|+- .+||+++.|| |+||++... +.+..+.+|..+|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999953 4799999999 999998731 1234577899999999999999
Q ss_pred CEEEEEeCCCcEEeccC
Q 011978 457 EKVASGGKDRVLKLWMG 473 (473)
Q Consensus 457 ~~l~s~~~D~~i~~w~~ 473 (473)
..|+|.|.||.+|+|++
T Consensus 301 tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWKA 317 (361)
T ss_pred eEEeecCCCceeeehhh
Confidence 99999999999999974
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=216.54 Aligned_cols=277 Identities=20% Similarity=0.368 Sum_probs=212.7
Q ss_pred EEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCCc----CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGH----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd 226 (473)
..++..+++-.+|+.++. ..+.+|...... .......+. .-....+.|.. ...+.++|++..|.|.+||
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~----~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ----LYSNLIATCSTNGVISVWD 116 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc----chhhhheeecCCCcEEEEe
Confidence 445556677777776664 345555443211 100000011 11233456652 2456899999999999999
Q ss_pred CCC---CeEEEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 227 VSL---RKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 227 ~~~---~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
+.. .+.+..+..|...+.++.|++- .+|++|++||+|+.||++..+...++.+....|..+.++|.+
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-------- 188 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-------- 188 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC--------
Confidence 987 6777789999999999999864 489999999999999999988888888777778888887652
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d 381 (473)
+..++++.+.|.+++||++...+....+..|.+.|.|+.|+|++.+|||||.|
T Consensus 189 ---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 189 ---------------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred ---------------------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 45689999999999999999988889999999999999999999999999999
Q ss_pred CcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCC-EEEEEeC--CCcEEEEECCCC-ceeecccccCCCEEEEEEee-C
Q 011978 382 KSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSR-LLLSGSK--DSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-D 455 (473)
Q Consensus 382 ~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~-~l~s~s~--Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~-d 455 (473)
+.|+|||..+++.-....- -..+|.+|+|-|+.+ +||+++. |-.|+|||++.. -...++..|.+.++.++|-. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 9999999986653222222 346899999999764 6888774 778999999764 34567888999999999964 5
Q ss_pred CCEEEEEeCCCcEE
Q 011978 456 GEKVASGGKDRVLK 469 (473)
Q Consensus 456 ~~~l~s~~~D~~i~ 469 (473)
-..|-+++.|+++.
T Consensus 322 ~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 322 RINLWSCSKDGTVL 335 (839)
T ss_pred ceeeEeecCccHHH
Confidence 56788999998763
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-26 Score=201.20 Aligned_cols=229 Identities=28% Similarity=0.405 Sum_probs=182.2
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
.++|.|++-+|+|.+|+.|...+.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|++|+.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 45799999999999999999999999999999998888899999999999999999999999999999998632
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC---CeEEEeecCCeEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---GVIYTGSQDCTIK 264 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~~~d~~i~ 264 (473)
++....++ +-+.+..+..|..+|+.+..... ..++|++.|.+++
T Consensus 155 -------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 155 -------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred -------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 12222222 22344556789999999888654 4799999999999
Q ss_pred EEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 265 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
+||+..|.++.++..
T Consensus 202 ~wdlS~g~LLlti~f----------------------------------------------------------------- 216 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITF----------------------------------------------------------------- 216 (476)
T ss_pred EEEeccceeeEEEec-----------------------------------------------------------------
Confidence 999998876544321
Q ss_pred eCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC----------------CceEEEeeCCcc--CEE
Q 011978 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------------GKFVAVFRGHVG--PVY 406 (473)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~----------------~~~~~~~~~h~~--~v~ 406 (473)
+..+.+++.+|.++.+..|+.+|.|.+.++.. +..+..+.||.+ .|+
T Consensus 217 ---------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 217 ---------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred ---------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 12355666666666677777777666655432 234567789988 999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d 455 (473)
|++.+-||..|++|+.||.|.|||+.+.+.++++..-.++|+.+.+.|=
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999999999999999888887655678888888554
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-24 Score=197.95 Aligned_cols=328 Identities=20% Similarity=0.290 Sum_probs=242.6
Q ss_pred ccccccCCc-ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 100 CSATIAGHT-EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 100 ~~~~~~gh~-~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
+...+.|+. ..|.+++|+ ++.+|++.+.+|.|.-||+.+.++........+.|++++.+|.+..++.|+.||.++..+
T Consensus 60 ~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 344555655 469999999 566788999999999999999999988888889999999999999999999999888888
Q ss_pred CCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--------cCccccEEEEEec
Q 011978 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--------SGHTLAVTCVKWG 249 (473)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~ 249 (473)
...++... ..+...++++.+++|+| +..++++|+.||.|++||...+..+... ++....|+++.|-
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~-----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNP-----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL 213 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecC-----CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe
Confidence 87765432 23444568899999988 4457999999999999999988776621 1234567888888
Q ss_pred CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 250 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.++.|++|..-|+|++||...|.+++.+..|...|.+++.+++ .
T Consensus 214 rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------------------------~ 257 (691)
T KOG2048|consen 214 RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN------------------------------------E 257 (691)
T ss_pred ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC------------------------------------C
Confidence 8999999999999999999999999999999999999988764 3
Q ss_pred ceEEEecCCceEEEEeCCCCCC---CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC---------------
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--------------- 391 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~--------------- 391 (473)
+.+++++-|+.+..+.....+. .......|...+++++..++ .+.+|+.|.++.+-..+.
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccccc
Confidence 4678888888888776554433 22334567777888888766 677777777666543211
Q ss_pred ---------------------------C----c-----eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC--
Q 011978 392 ---------------------------G----K-----FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT-- 433 (473)
Q Consensus 392 ---------------------------~----~-----~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-- 433 (473)
. + +++........|.+.+.||+|++++.+.- ...+||.+..
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP 414 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc
Confidence 0 0 00001111235788899999999987751 1233332221
Q ss_pred ----------------------------------------------C--ceeecc--cccCCCEEEEEEeeCCCEEEEEe
Q 011978 434 ----------------------------------------------Q--KLKQDL--PGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 434 ----------------------------------------------~--~~~~~~--~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
. +....+ .+....|..+..||||++||..+
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~ 494 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS 494 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe
Confidence 0 000001 11235688899999999999999
Q ss_pred CCCcEEecc
Q 011978 464 KDRVLKLWM 472 (473)
Q Consensus 464 ~D~~i~~w~ 472 (473)
.++.|.+|+
T Consensus 495 t~g~I~v~n 503 (691)
T KOG2048|consen 495 TRGQIFVYN 503 (691)
T ss_pred ccceEEEEE
Confidence 999999986
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2e-25 Score=183.22 Aligned_cols=240 Identities=23% Similarity=0.359 Sum_probs=196.2
Q ss_pred EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
.+++|+.+++.+.++.+|.+|++++.|.+..+|-..+|+.+. .+.+|.+.|-++...- +...+++|+.|.++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~-----~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDW-----DSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecC-----CcceeeeccccceeEE
Confidence 467999999999999999999999999999999988888766 4789999998876432 4578999999999999
Q ss_pred EECCCCeEEEEecCccccEEEEEecCCCeEEEeecC------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeec
Q 011978 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (473)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 298 (473)
||+++|+++..++- ..+|..+.|+.+|.++..+.| +.|.++|++....-
T Consensus 79 WDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~------------------------ 133 (327)
T KOG0643|consen 79 WDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD------------------------ 133 (327)
T ss_pred EEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh------------------------
Confidence 99999999988764 457889999988865555544 34555554421100
Q ss_pred cccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE
Q 011978 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (473)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg 378 (473)
...+.|..++..+...++.+-|+|-+++|++|
T Consensus 134 ------------------------------------------------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 134 ------------------------------------------------IDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred ------------------------------------------------hcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 00122334444556778889999999999999
Q ss_pred ECCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978 379 SFDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 379 s~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
..||.|..||.++|+ .+..-+.|...|++++++||..+++++|.|.+-++||+.+...++++. -..+|++.+++|-..
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLD 244 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccc
Confidence 999999999999985 455667899999999999999999999999999999999998888876 357899999999988
Q ss_pred EEEEEeC
Q 011978 458 KVASGGK 464 (473)
Q Consensus 458 ~l~s~~~ 464 (473)
+++.||.
T Consensus 245 ~VilgGG 251 (327)
T KOG0643|consen 245 HVILGGG 251 (327)
T ss_pred eEEecCC
Confidence 8887765
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=203.79 Aligned_cols=243 Identities=24% Similarity=0.345 Sum_probs=181.3
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d 219 (473)
..+++|...|+++++.|.|..+++|+.|-.|++||.+.... ..+....-...|+++.|++ .+.+|+..+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-----Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-----TGDQILVVSGS 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-----CCCeEEEEecC
Confidence 45778999999999999999999999999999999875432 2222333445678888877 45688888888
Q ss_pred CcEEEEECCCCeEE------------EEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEE
Q 011978 220 GDARIWDVSLRKCV------------ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN 285 (473)
Q Consensus 220 g~i~iwd~~~~~~~------------~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 285 (473)
...+++|-.....+ ...+||...++|.+|+|.. .+++++.||++|+||+..-+...++-
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi------- 308 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI------- 308 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE-------
Confidence 89999985543322 2236899999999999875 69999999999999987543211110
Q ss_pred EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (473)
.... ..+..-.+++
T Consensus 309 -----------------------------------------------------------k~k~-------~~g~Rv~~ts 322 (641)
T KOG0772|consen 309 -----------------------------------------------------------KTKP-------AGGKRVPVTS 322 (641)
T ss_pred -----------------------------------------------------------eecc-------CCCcccCcee
Confidence 0000 0111234678
Q ss_pred EEECCCCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeec
Q 011978 366 VYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVG--PVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQD 439 (473)
Q Consensus 366 v~~sp~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~ 439 (473)
.+|+|||++||+|..||+|.+|+..+.. ....-.+|.. .|++|.||+||++|++-+.|+++++||++..+ .+..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 8999999999999999999999975432 2334467877 89999999999999999999999999998643 3333
Q ss_pred ccccC--CCEEEEEEeeCCCEEEEEeC
Q 011978 440 LPGHA--DEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 440 ~~~h~--~~i~~l~~s~d~~~l~s~~~ 464 (473)
..+-. -+-+.++||||.+.|++|+.
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEeccc
Confidence 33221 23467899999999998864
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-25 Score=217.75 Aligned_cols=268 Identities=28% Similarity=0.413 Sum_probs=200.9
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC----------C--------ceeEEEcCCCCCEEEEEECC
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------Q--------TPMFKCTGHKNWVLCIAWSA 160 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----------~--------~~~~~~~~~~~~v~~l~~s~ 160 (473)
+...+...|.+.|+|+.|+|||++||+||+|+.|.||.... + +....+.+|...|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34455677999999999999999999999999999999762 0 13456789999999999999
Q ss_pred CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc
Q 011978 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (473)
Q Consensus 161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~ 240 (473)
++.+|++++.|++|.+||..+.+ ....+.+|...|.++.|.|. +.+|++-+.|+++++|+..+..+.+.+.++.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CccEEEEecccceEEEEccccce-eeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 99999999999999999999984 44568999999999999984 5799999999999999987766666555443
Q ss_pred ------ccEEEEEecCCCe-EEEee----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978 241 ------LAVTCVKWGGDGV-IYTGS----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (473)
Q Consensus 241 ------~~v~~~~~~~~~~-l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
.....+.|+|||. |++.- .-.++.|.+-.+-+.-..+-+|..++..+.++|...-+.
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~------------ 281 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN------------ 281 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc------------
Confidence 2456789999995 44431 234566666655555566667777777776665310000
Q ss_pred HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
. . +|+ ..++ . ..-..+|+||.|++|.||..
T Consensus 282 ------------~--------~------ng~--------~~~~-----------~-----~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 282 ------------N--------K------NGT--------STQP-----------N-----CYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred ------------c--------c------cCC--------ccCC-----------C-----cceEEEEEecCCccEEEEec
Confidence 0 0 000 0000 0 00125889999999999998
Q ss_pred CCCceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 390 TTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 390 ~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
...+++.... -....|.+++|+|||..|..+|.||+|.+..+...
T Consensus 312 ~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 312 ALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7777654432 23468999999999999999999999999988753
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.5e-27 Score=220.61 Aligned_cols=254 Identities=27% Similarity=0.520 Sum_probs=215.4
Q ss_pred eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (473)
Q Consensus 164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 243 (473)
.++....+-.+++|+.+. ...|...+.++... ...+.+++|+.|..+-+|.+....++..+.+|...|
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~~-----~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespI 73 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKIR-----KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPI 73 (825)
T ss_pred ccceeeeeeccccccchh-------hhhhhhhhceeeee-----ccceeeccCCCceeeccccccCCchhheeeccCCcc
Confidence 344555566778888653 33455555555431 234567889999999999998888888899999999
Q ss_pred EEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.|+.|+.+. +|++|+.+|+|++||++.++.++++.+|...+.++.++|-.
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~----------------------------- 124 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG----------------------------- 124 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-----------------------------
Confidence 999999765 67889999999999999999999999999999999887742
Q ss_pred cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc
Q 011978 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~ 402 (473)
++.++|+.|..+.+||.... .+.....+|...+.+++|+|+|++++.|+.|.++++||...|+.+..|+.|.
T Consensus 125 -------~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e 196 (825)
T KOG0267|consen 125 -------EFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE 196 (825)
T ss_pred -------EEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence 34678999999999998643 3445566799999999999999999999999999999999999999999999
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+.+.++.|+|..-++++||.|++|++||+++.+.+.........|.++.|+||++.+.+|..+.
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999999999999999999999999999999888877777778899999999999998887654
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-26 Score=190.09 Aligned_cols=253 Identities=29% Similarity=0.469 Sum_probs=205.3
Q ss_pred cccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeC------CC-------------------------------
Q 011978 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT------------------------------- 139 (473)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~------~~------------------------------- 139 (473)
..+|..++.||.+.|++++|++.+.+++++++|++..||.. ..
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 46788999999999999999999999999999999999962 10
Q ss_pred ---CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978 140 ---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (473)
Q Consensus 140 ---~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~ 216 (473)
..|+..+++|...|.+..|-..|+++++++.|.+-.+||+++|... .++.||....+.+.-+| ..+..++.
T Consensus 259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-~~LtGHd~ELtHcstHp-----tQrLVvTs 332 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-NILTGHDSELTHCSTHP-----TQRLVVTS 332 (481)
T ss_pred ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-ccccCcchhccccccCC-----cceEEEEe
Confidence 0145667899999999999999999999999999999999999865 57899999888876655 34678899
Q ss_pred eCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 217 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
+.|-+.++||++.. ..+..|.||...|+++.|+-+..+++|+.|.+|++||+++-+. +
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs---------p------------ 391 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS---------P------------ 391 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC---------c------------
Confidence 99999999999843 4567889999999999999988999999999999999875321 0
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 375 (473)
+++-- -...++.++++..+..|
T Consensus 392 ------------------------------------lATIR----------------------tdS~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 392 ------------------------------------LATIR----------------------TDSPANRVAVSKGHPII 413 (481)
T ss_pred ------------------------------------ceeee----------------------cCCccceeEeecCCceE
Confidence 11100 01245667788778888
Q ss_pred EEEECCCcEEEEeCCCCceEE----EeeCCccCEEEEEEecCC--CEEEEEeCCCcEEEEECCCC
Q 011978 376 ASASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQISWSADS--RLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 376 asgs~d~~v~lwd~~~~~~~~----~~~~h~~~v~~v~~sp~g--~~l~s~s~Dg~i~iwd~~~~ 434 (473)
|.-..++.|++||+....+.. .-++|...|+|++|..+- .-|.+++.|..+.-|.+...
T Consensus 414 AiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 888888999999987544322 336899999999998643 45889999999999998653
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=194.25 Aligned_cols=281 Identities=15% Similarity=0.275 Sum_probs=218.9
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCcc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~ 184 (473)
.+.|+++.|+|....|.+|+.|++++||.+..+. .+..+.--..+|.+.+|.|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999986543 3344333457899999999999 888999999999999998764
Q ss_pred cc-ccCCCcCC-cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978 185 SG-NPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (473)
Q Consensus 185 ~~-~~~~~~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~ 261 (473)
.. .+..++.. .+.....+ .++..++..|..|.|.+.-..++..+..++ -.+.|..++|++++ .|++++.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVS-----hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVS-----HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ccccCCCCcccchhheeEec-----CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence 32 12333332 22222222 355688999999999999888887776654 34578899999888 478888999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.|.+||+++..+++.+...+ .+
T Consensus 367 eV~v~nl~~~~~~~rf~D~G----------------------------------------------------------~v 388 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDG----------------------------------------------------------SV 388 (514)
T ss_pred eEEEEecCCcceEEEEeecC----------------------------------------------------------cc
Confidence 99999999877666543211 10
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------CceEEEeeCCccCEEEEEEecCCC
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
.-++++.+++|.|||+||..|.|.|||..+ .+++..+..-...|+++.|+||++
T Consensus 389 --------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 389 --------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred --------------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 124678889999999999999999999653 355666666667899999999999
Q ss_pred EEEEEeC--CCcEEEEECCCCceeecccccC---CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 416 LLLSGSK--DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 416 ~l~s~s~--Dg~i~iwd~~~~~~~~~~~~h~---~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.||.+|. +..+++-.+.+......++... +.|++++|||.|.+||.|-.+|++.+|.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 9988874 6789999998876666555432 4689999999999999999999999995
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.9e-24 Score=170.02 Aligned_cols=241 Identities=27% Similarity=0.446 Sum_probs=192.5
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-----eEEEcCCCCCEEEEEECCC----CCeEEEEe-cCCeE
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSAD----GKHLVSGS-KAGEL 174 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~s~d----g~~l~s~~-~dg~i 174 (473)
+-|.+.|.|.+|+|+|+++|+|+.|++|++--.+...+ -..+.-|.+.|..++|..+ |..|++++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 45899999999999999999999999999987654322 2345668999999999643 45666654 46778
Q ss_pred EEeeCCCCccccccCCCcCCcEEEE-EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEE
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCV 246 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~ 246 (473)
++=|..+|... ..+.+|++.|.++ .|+ +.+|++|+.|.+|++||++-..|+.++.. ...+|.++
T Consensus 166 y~tdc~~g~~~-~a~sghtghilalyswn-------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 166 YITDCGRGQGF-HALSGHTGHILALYSWN-------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred EEeecCCCCcc-eeecCCcccEEEEEEec-------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 88888777654 4578999998886 454 35899999999999999998888876532 23578888
Q ss_pred EecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 247 KWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 247 ~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
+..|.|. |++|-.|....+||++.++.++.+.
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~----------------------------------------------- 270 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH----------------------------------------------- 270 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeC-----------------------------------------------
Confidence 9998884 6788889999999988877665443
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC----ceEEEeeCC
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGH 401 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~----~~~~~~~~h 401 (473)
.|...|+|+.|+|...|+.+++.|..|++-|++.. -.+.+...|
T Consensus 271 --------------------------------phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 271 --------------------------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred --------------------------------CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 34566889999999999999999999999998632 234455679
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
...+..+.|+|..--+++.|.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999889999999999999653
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=204.36 Aligned_cols=283 Identities=17% Similarity=0.322 Sum_probs=218.4
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
.+|+.+-+.+.|.|+|.+|++++.||.|++|+.... .....+.-+...|.+++- ++.+|++|+.+++|.+|....+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368899999999999999999999999999987554 211112226667777775 45699999999999999987765
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCe
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~ 262 (473)
... .+...+-++..++++. ++.+++.||.|-.|++-+.........+.+|.++|.++.|+|++ .|++.+.||.
T Consensus 88 ~~~-iL~Rftlp~r~~~v~g-----~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 88 EDT-ILARFTLPIRDLAVSG-----SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred ccc-eeeeeeccceEEEEec-----CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 432 2333445566666543 66789999999999999999999999999999999999999987 5778899999
Q ss_pred EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (473)
Q Consensus 263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 342 (473)
+++||+.++.+..++.+-.. +
T Consensus 162 v~iw~~~~~~~~~tl~~v~k---------~-------------------------------------------------- 182 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDK---------D-------------------------------------------------- 182 (933)
T ss_pred EEEEEcccchhhhhcccCCc---------c--------------------------------------------------
Confidence 99999998876655432100 0
Q ss_pred EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEE
Q 011978 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~ 420 (473)
.+ ......+..++|+|+|..+|..+.|+.|++|+...++....++. +...+..+.|+|.|+|||++
T Consensus 183 -n~-----------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 183 -NE-----------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred -cc-----------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence 00 00023466789999988889899999999999999988877764 44559999999999999999
Q ss_pred eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 421 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
+.||.|-|||..+-.. ......|.+++|.|+++.+-.-..-|..-+
T Consensus 251 ~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 251 TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred ccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999987221 223467999999999887755554444433
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.5e-23 Score=189.78 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=199.2
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i 199 (473)
..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+|+.+ ++++.++.|++||..+++.... +..+.. +..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~-~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSGPD-PELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCCCC-ccEE
Confidence 4678899999999999998887777765544 6789999999977 5667889999999988765432 222322 3455
Q ss_pred EeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCC-eEEEEECCCCceeee
Q 011978 200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDC-TIKVWETTQGKLIRE 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~-~i~~wd~~~~~~~~~ 276 (473)
.|+| +++.+ ++++.++.+++||+.+++.+..+..+ ..+.+++|++++. +++++.++ .+.+||..+++....
T Consensus 79 ~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 79 ALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 6655 33444 55567899999999988877666432 3467899999884 55666554 567789887766544
Q ss_pred eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE-EEecCCceEEEEeCCCCCCCeee
Q 011978 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR 355 (473)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~ 355 (473)
+... .....+.++++ ...+ +++..++.+++||....+.....
T Consensus 153 ~~~~-~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 153 VLVD-QRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred EEcC-CCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 3221 12233333332 1234 45567899999998754322211
Q ss_pred -ecC---cc--cceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE-eCCCcEE
Q 011978 356 -MTG---HQ--QLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG-SKDSTLK 427 (473)
Q Consensus 356 -~~~---~~--~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~Dg~i~ 427 (473)
... +. .....++|+|++++++.+ +.++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|+
T Consensus 196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 110 11 123468899999986554 456689999999888776553 34578999999999999886 4689999
Q ss_pred EEECCCCceeecccccCCCEEEEEEee
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
+||+.+++.+..++.. ...++++++|
T Consensus 275 v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 275 VIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999988887654 5558888765
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=186.13 Aligned_cols=254 Identities=25% Similarity=0.440 Sum_probs=196.7
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
.++++..|.+.|+++.|+|....|++|+.|++|+++|+..... .++.-....+|.++.|+|.|.+|+.|..-.++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 4567888999999999999999999999999999999864321 12222234579999999999999999999999999
Q ss_pred eCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-Ccc-ccEEEEEecCCC-
Q 011978 178 DPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG- 252 (473)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~-~~v~~~~~~~~~- 252 (473)
|+++-++. ..+-..|++.|+++.+++ .+...++++.||.|++||--+++|+.++. .|. ..|.+..|..++
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 99987642 345678999999999876 45789999999999999998999987764 454 468888899888
Q ss_pred eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
++++.+.|..+++|.+.+|+.+....+.+.. +...+ +.+.+.....+.+
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t--------------grq~~-----------------rtqAvFNhtEdyV 367 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTT--------------GRQKH-----------------RTQAVFNHTEDYV 367 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCcc--------------cchhh-----------------hhhhhhcCccceE
Confidence 5889999999999999999998877653210 00000 0000111111222
Q ss_pred -EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 333 -VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 333 -~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
.---..+.+.-||.++.........+|.+.++.+.-||.+.-++++|.|..+|+|--
T Consensus 368 l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 368 LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 222234568889988777777777899999999999999999999999999999953
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.4e-26 Score=214.25 Aligned_cols=237 Identities=28% Similarity=0.524 Sum_probs=208.8
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
.+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|+.+|.|+.|+++..+|++|+.+|+|++||++.+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 34568899999998778899999999999999998877777778999999999999999999999999999999999988
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~ 261 (473)
+... .+.+|...+..+.|+| .+.++++|+.|+.+++||++..-|.+.+.+|...|.++.|.|+| .++.|+.|.
T Consensus 103 k~vr-tLtgh~~~~~sv~f~P-----~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 103 KIVR-TLTGHLLNITSVDFHP-----YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhh-hhhccccCcceeeecc-----ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 7654 6889999999999988 45688999999999999999999999999999999999999999 678889999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
++++||+..|+.+..++.|
T Consensus 177 tvki~d~~agk~~~ef~~~------------------------------------------------------------- 195 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSH------------------------------------------------------------- 195 (825)
T ss_pred eeeeecccccccccccccc-------------------------------------------------------------
Confidence 9999999888876655543
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
...+.++.|+|..-++++||.|+++++||+++.+.+...+.....|.+++|+|+++.+++|.
T Consensus 196 ------------------e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 196 ------------------EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ------------------cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 34455667888888899999999999999999888888777788999999999999999887
Q ss_pred CCC
Q 011978 422 KDS 424 (473)
Q Consensus 422 ~Dg 424 (473)
.+.
T Consensus 258 q~s 260 (825)
T KOG0267|consen 258 QIS 260 (825)
T ss_pred hhh
Confidence 654
No 129
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=2.5e-24 Score=196.59 Aligned_cols=112 Identities=31% Similarity=0.583 Sum_probs=101.6
Q ss_pred cceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-------ceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 011978 361 QLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-------KFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 361 ~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~ 431 (473)
..|+.+.|.| |...||.++.||.|++|.+..+ .....+.+|...|+++.|+| -...|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4588899999 7889999999999999998754 34567889999999999999 4568999999999999999
Q ss_pred CCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 432 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 432 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++.+....+.||.+.|++++|||||+.+|+.+.||+|+++.
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99999889999999999999999999999999999999985
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-23 Score=189.85 Aligned_cols=360 Identities=20% Similarity=0.271 Sum_probs=239.1
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
..-.+.|++++.+|.+..++.|+.||.+..++...+...+. +...++.|.+++|+|++..|++|+.||.|++||..++
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 44567899999999999999999999888888777654332 3345688999999999999999999999999999887
Q ss_pred ccccc---cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEee
Q 011978 183 KPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258 (473)
Q Consensus 183 ~~~~~---~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~ 258 (473)
..... .+.+-...=..+.|+-... .+..+++|.+.|+|++||...+..+..+..|...|.|++.+++ ..+++++
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 65431 1112222223445544332 3468999999999999999999999999999999999999877 4899999
Q ss_pred cCCeEEEEECCCCce----eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 259 QDCTIKVWETTQGKL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
.|+.|..|...+++. ......|.+.|.+++..+. .+..+..|..-..... .+.+..... ..........+.+
T Consensus 265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s-~~~~~~~h~--~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSS-REFKNMDHR--QKNLFPASDRVSV 340 (691)
T ss_pred CCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccc-cccCchhhh--ccccccccceeec
Confidence 999999888766533 2234668888999887765 3333333221111100 000000000 0001111223333
Q ss_pred ecCCceEEEE--------eCCCC----CC----CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-------
Q 011978 335 GSDDFTMFLW--------EPAVS----KQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------- 391 (473)
Q Consensus 335 ~~~d~~i~iw--------d~~~~----~~----~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------- 391 (473)
+..+..+.+| .+... .. ...........|.+.+.||+|++||.+.-. .+++|.+.-
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence 4444444444 32211 00 011122234568899999999999988732 233433221
Q ss_pred -----------------------------------------C--ceEEEe--eCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978 392 -----------------------------------------G--KFVAVF--RGHVGPVYQISWSADSRLLLSGSKDSTL 426 (473)
Q Consensus 392 -----------------------------------------~--~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg~i 426 (473)
+ +.+..+ ++-.+.|+.+..||+|++||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 0 000000 0123578999999999999999999999
Q ss_pred EEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEeCCCcEEec
Q 011978 427 KVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 427 ~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~~w 471 (473)
.+|++.+++.......-...|++++++ ++.+.|+.+..|+++.=|
T Consensus 500 ~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef 545 (691)
T KOG2048|consen 500 FVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF 545 (691)
T ss_pred EEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence 999999877654443344789999999 556789999999987644
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=188.37 Aligned_cols=297 Identities=19% Similarity=0.321 Sum_probs=219.9
Q ss_pred eCCCCceeEEEcCCCCCEEEEEECCCC--CeEEEEecCCeEEEeeCCCC---ccccccCCCcCCcEEEEEeceeccCCCC
Q 011978 136 DLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPC 210 (473)
Q Consensus 136 d~~~~~~~~~~~~~~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 210 (473)
|+.+..+....+.+...|++++|+|.. +.+++|+.-|+|-+||+.+. ......+..|..+|.++.|+|...
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---- 247 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---- 247 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh----
Confidence 333333344455678899999999964 47788889999999999522 222234678999999999999644
Q ss_pred ceEEEeeCCCcEEEEECCCCeEEE--EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCce-eeeeeccCceEEE
Q 011978 211 RRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNS 286 (473)
Q Consensus 211 ~~~~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~ 286 (473)
.++++.|.||+|+.-|++....-. .+........++.|+.+. .++.+..-|...+||++++.. ...+..|...|.+
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 589999999999999998754322 222234445666776554 577788778999999998754 5556778889999
Q ss_pred EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC---CeeeecCcccce
Q 011978 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLV 363 (473)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v 363 (473)
++++|.. +..+++++.|++++|||++.... +......|...|
T Consensus 328 v~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV 372 (498)
T KOG4328|consen 328 VALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV 372 (498)
T ss_pred eecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence 9988752 45799999999999999875332 234566899999
Q ss_pred eEEEECCCCcEEEEEECCCcEEEEeCC----CCceEEEeeCCc----c--CEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 364 NHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHV----G--PVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 364 ~~v~~sp~g~~lasgs~d~~v~lwd~~----~~~~~~~~~~h~----~--~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.++.|||.+..|+|.+.|..|+|||.. .-++..++. |. . .....+|.|+..++++|-.-..|-|+|-..
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 999999988889999999999999973 223333332 22 1 245678999999999999989999999998
Q ss_pred CceeecccccC-CCEEEE-EEeeCCCEEEEE-eCCCcEEecc
Q 011978 434 QKLKQDLPGHA-DEVFAV-DWSPDGEKVASG-GKDRVLKLWM 472 (473)
Q Consensus 434 ~~~~~~~~~h~-~~i~~l-~~s~d~~~l~s~-~~D~~i~~w~ 472 (473)
++....+.... ..|.++ .|+|-+..+++| +..|.|.||+
T Consensus 452 ~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 452 GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred CEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 88666654332 245554 799998845554 5678899885
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=185.75 Aligned_cols=270 Identities=22% Similarity=0.336 Sum_probs=200.0
Q ss_pred EEeCC-CeEEEEeCCCCceeEEEcCC-CCCEEEEEECCCCCeEEEEecC-CeEEEeeCCCCccccccCCCcCCcEEEEEe
Q 011978 125 SGSGD-TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGHKKWITGISW 201 (473)
Q Consensus 125 t~s~d-~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 201 (473)
+++.| .++.+||+.++.....+++. ...-.++..- .+.+++++... ..+.+|.+....... ...--.+.+.++.-
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeec
Confidence 33445 45999999999887777654 2221222211 24577776543 578999886543322 11222345666654
Q ss_pred ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeecc
Q 011978 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH 280 (473)
Q Consensus 202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 280 (473)
.| .+.+++.|+..|.+.+|.+.+|..+..+.+|-..|+|+.|+.|+ .+++|+.||.|.+|++.+
T Consensus 90 ~n-----~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~---------- 154 (476)
T KOG0646|consen 90 SN-----LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD---------- 154 (476)
T ss_pred CC-----CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----------
Confidence 43 33445555599999999999999999999999999999999888 699999999999998632
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 360 (473)
+++...|+ .-.+...+..|.
T Consensus 155 ---------------------------------------------------lv~a~~~~---------~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 155 ---------------------------------------------------LVSADNDH---------SVKPLHIFSDHT 174 (476)
T ss_pred ---------------------------------------------------ecccccCC---------CccceeeeccCc
Confidence 11222221 113344566788
Q ss_pred cceeEEEECCC--CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---
Q 011978 361 QLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK--- 435 (473)
Q Consensus 361 ~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~--- 435 (473)
-.|+++...+. ..+|+|+|.|.++++||+..|.++..+.- ...+.+++.+|.++.++.|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 88888877764 46899999999999999999998877653 4579999999999999999999999998875321
Q ss_pred -------------eeecccccCC--CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 436 -------------LKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 436 -------------~~~~~~~h~~--~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
....+.||.. .|++|+.+-||..|+||+.||++.||+
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 2345678887 999999999999999999999999996
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-23 Score=198.53 Aligned_cols=239 Identities=19% Similarity=0.399 Sum_probs=191.5
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
.|..+-+.++|.|+|..|++++.||.|++|+..........+.-+...|.+++.. ..+|++|+.+++|..|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------ccceEEeeccceEEEeeC
Confidence 6888899999999999999999999999998765422222233366667776532 348999999999999999
Q ss_pred CCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978 228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
..+..-..+.....++++++++.+| .++.|+.|-.|++-+..+...
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--------------------------------- 130 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--------------------------------- 130 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---------------------------------
Confidence 8876544444556788999999888 477788888888876544322
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l 386 (473)
...+.+|...|.++.|+|++++||+.+-||.|++
T Consensus 131 ----------------------------------------------~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 131 ----------------------------------------------EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ----------------------------------------------heeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 2335577888999999999999999999999999
Q ss_pred EeCCCCceEEEeeC--------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--cCCCEEEEEEeeCC
Q 011978 387 WNGTTGKFVAVFRG--------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDG 456 (473)
Q Consensus 387 wd~~~~~~~~~~~~--------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~d~ 456 (473)
||++++.+..++.+ ....+..++|+|+|..++..+.|+.|++|+...+.....+.. +...+..+.|||.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99999887665543 145678899999988888888999999999999887766644 34458899999999
Q ss_pred CEEEEEeCCCcEEecc
Q 011978 457 EKVASGGKDRVLKLWM 472 (473)
Q Consensus 457 ~~l~s~~~D~~i~~w~ 472 (473)
+|||+++.||.|.||+
T Consensus 245 ~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWN 260 (933)
T ss_pred cEEeeeccCCcEEEEe
Confidence 9999999999999997
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=170.25 Aligned_cols=279 Identities=18% Similarity=0.329 Sum_probs=202.3
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 190 (473)
-.|+.|++.|.+||.|+.||.|.|||+.|......+.+|..+|.|++||+||+.|++++.|..|.+||+..|......
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence 679999999999999999999999999998877778899999999999999999999999999999999988754432
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---Cc-cccEEEEEecCCC-eEEEeecCCeEEE
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GH-TLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~-~l~s~~~d~~i~~ 265 (473)
....+|....|+|... +.++..-.+..-.+-++..++....-. +. +..-.+..|...| ++++|...|.+.+
T Consensus 104 rf~spv~~~q~hp~k~----n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKR----NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EccCccceeeeccccC----CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 2346777888887543 244444444444444444322211111 11 1111223466655 6899999999999
Q ss_pred EECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
+|..+-+++..++... ..|..+-++. ..+.++.-+.|+.|+.+
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTY 223 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEec------------------------------------cCcEEEEecCCceEEEE
Confidence 9999988888776544 4444444332 24568888899999999
Q ss_pred eCCCCC-----CCee---eec--CcccceeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEeeCCc-cCEEEEEEec
Q 011978 345 EPAVSK-----QPKT---RMT--GHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHV-GPVYQISWSA 412 (473)
Q Consensus 345 d~~~~~-----~~~~---~~~--~~~~~v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~sp 412 (473)
+...-. .... ++. -....-.+++||.+|.|++.|+.. ..+++|.-..|.+++++.|.. ....+|.|+|
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 864111 0111 100 011223568999999999988753 579999999999999998877 5678899999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 011978 413 DSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~~ 432 (473)
-...+++- ..|+|+||...
T Consensus 304 ~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ceeeeeec-cCCceEEEEee
Confidence 98888887 67899999753
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=185.36 Aligned_cols=238 Identities=21% Similarity=0.377 Sum_probs=183.9
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~ 268 (473)
+.+|.+.|.+++=+|... ..+++|+.||.|+|||+....|+..+..|.+.|..+++.. +.+++++.|.+|+.|..
T Consensus 62 L~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccccccchhhcCcchh----hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence 578888888888777543 3689999999999999999999999999999999999886 67899999999999986
Q ss_pred CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 348 (473)
.. ..++++.+... +..+.-+ .....+++|+. .|-|||...
T Consensus 137 ~~-~p~~tilg~s~-~~gIdh~------------------------------------~~~~~FaTcGe--~i~IWD~~R 176 (433)
T KOG0268|consen 137 DG-PPLHTILGKSV-YLGIDHH------------------------------------RKNSVFATCGE--QIDIWDEQR 176 (433)
T ss_pred cC-Ccceeeecccc-ccccccc------------------------------------cccccccccCc--eeeeccccc
Confidence 53 23333222110 0000000 01224556554 488999753
Q ss_pred CCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 349 ~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
..|...+....+.|.++.|+|.. ..|++++.|+.|.|||++++.++....- .-.-+.++|+|.+--+++|+.|..++
T Consensus 177 -~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 177 -DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred -CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccce
Confidence 34556666667789999999965 5677888999999999999988765432 22456799999887889999999999
Q ss_pred EEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 428 VWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 428 iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
.||++.. ..+....+|.+.|++++|||.|+-++|||.|++|+||.+
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 9999864 456777889999999999999999999999999999853
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=4.3e-23 Score=188.71 Aligned_cols=285 Identities=24% Similarity=0.383 Sum_probs=202.6
Q ss_pred EEEECCC---CCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 113 SVAFSPD---GRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 113 ~~~~sp~---~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
+..|++. ...||.+.+||.|.++|..... .+.....|.+.|..+.|-|....|++++.|.++++||+++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3556543 4568899999999999986432 234456899999999999976789999999999999999887
Q ss_pred cccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--E-------------------------EE
Q 011978 184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V-------------------------IC 235 (473)
Q Consensus 184 ~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~--~-------------------------~~ 235 (473)
..+. ...+|...|.+++|.|.. ...|++|+.||.+.|||++-... + ..
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTN----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred eecceeecccccccchhhhccCC----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 6543 467999999999998854 35799999999999999864320 0 00
Q ss_pred ecCccc----cEEEEEecCCCeEEEeec-CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 236 LSGHTL----AVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 236 ~~~h~~----~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
-..+.. .|+.+.|..+..|++++. |+.|+|||+++..........
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~------------------------------ 259 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR------------------------------ 259 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC------------------------------
Confidence 011222 345566666667777665 888888888765432211000
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc---ccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASFDKSIKLW 387 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~lasgs~d~~v~lw 387 (473)
.......| ...+.++.....|.+|.+.+.|++|++|
T Consensus 260 -----------------------------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 260 -----------------------------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred -----------------------------------------cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 00000001 2245677777788888888889999999
Q ss_pred eCCCCc--eEEEeeCCccC--EEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEeeCC-CEEEE
Q 011978 388 NGTTGK--FVAVFRGHVGP--VYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPDG-EKVAS 461 (473)
Q Consensus 388 d~~~~~--~~~~~~~h~~~--v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~d~-~~l~s 461 (473)
|+.+.. ++..+.++... -..-..+||+.+|++|+.|...++|.+..-+. ...+.||...|++++|.|.. .-+++
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 987643 34445444321 12334589999999999999999999987543 45678999999999997642 34677
Q ss_pred EeCCCcEEecc
Q 011978 462 GGKDRVLKLWM 472 (473)
Q Consensus 462 ~~~D~~i~~w~ 472 (473)
++.|.++++|.
T Consensus 379 cSdD~~~kiW~ 389 (720)
T KOG0321|consen 379 CSDDFRVKIWR 389 (720)
T ss_pred eccCcceEEEe
Confidence 79999999996
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=180.75 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=210.9
Q ss_pred EeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCCCCeEEE--EecCCeEEEeeCCCCcccccc----CCCcCC-cE
Q 011978 126 GSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVS--GSKAGELQCWDPQTGKPSGNP----LSGHKK-WI 196 (473)
Q Consensus 126 ~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s--~~~dg~i~iwd~~~~~~~~~~----~~~~~~-~v 196 (473)
++....+++||+..-...-.+. ..+..+.++.|+.... |++ .+.|..+++|.-. |+....+ ..+... .|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEeccc-CCCCccceeeccccchHHHH
Confidence 3444579999986432211111 1233489999987653 444 4567889999633 2211111 111111 11
Q ss_pred EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeEEEEECCCCceee
Q 011978 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIR 275 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~ 275 (473)
.+.. ...++++|+..+.|+|||++...+...+++|...|+++.++. |.+|++++..|.|.+-.+.++....
T Consensus 86 ~~~s--------~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 86 ACAS--------QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred hhhh--------cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 1111 224789999999999999998888888999999999999985 5689999999999999999887777
Q ss_pred eeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 276 ELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 276 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
.+... ++.|.-+.+++.. ...|.+++++|.+.+||.........
T Consensus 158 ~f~~~sgqsvRll~ys~sk-----------------------------------r~lL~~asd~G~VtlwDv~g~sp~~~ 202 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSK-----------------------------------RFLLSIASDKGAVTLWDVQGMSPIFH 202 (673)
T ss_pred ceecCCCCeEEEeeccccc-----------------------------------ceeeEeeccCCeEEEEeccCCCcccc
Confidence 77554 4555555555431 23578899999999999877666666
Q ss_pred eecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 355 RMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
....|..+...|+|+| +..+|++.+.|..|.+||..+.+....+.. ..|...|+|+++|.+|+.|+..|.|+.||++.
T Consensus 203 ~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 203 ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 6778999999999999 456888999999999999987766655543 34889999999999999999999999999987
Q ss_pred C-ceeecccccCCCEEEEEEeeCC
Q 011978 434 Q-KLKQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 434 ~-~~~~~~~~h~~~i~~l~~s~d~ 456 (473)
. .....+..|...|++++|-|.-
T Consensus 282 ~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 282 TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCCCceEeeecccceeEEEeeecc
Confidence 4 4567888999999999998764
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=175.01 Aligned_cols=241 Identities=27% Similarity=0.474 Sum_probs=175.5
Q ss_pred cccCCcccEEEEEECCCCCe--EEEEeCCCeEEEEeCCC----------------CceeEEEcCCCCCEEEEEECCC-CC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQ--LASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSAD-GK 163 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~--lat~s~d~~i~iwd~~~----------------~~~~~~~~~~~~~v~~l~~s~d-g~ 163 (473)
...+|.+.++.+.-++-++- .|+=+..|.|+|||+.. .++++++.+|...=..|+|||- -.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34579999999998887654 44456789999999742 3577888999998999999992 22
Q ss_pred eEEEEecCCeEEEeeCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978 164 HLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241 (473)
Q Consensus 164 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 241 (473)
.|++|.-.+.|++|...+|... ..++ .+|..
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-----------------------------------------------~gH~~ 258 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPF-----------------------------------------------TGHTK 258 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccc-----------------------------------------------ccccc
Confidence 5888888889999988766421 1222 34555
Q ss_pred cEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 242 AVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 242 ~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
.|-.++|+| ++.+++|+.||+|+|||++.+..-.
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-------------------------------------------- 294 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-------------------------------------------- 294 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCCccc--------------------------------------------
Confidence 666666655 3567788888888888877652110
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC---CceEE
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVA 396 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~---~~~~~ 396 (473)
......|...|+.|.|+-+-.+||+|+.||+++|||++. ++++.
T Consensus 295 ---------------------------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 295 ---------------------------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred ---------------------------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 001124556788899998888999999999999999874 56889
Q ss_pred EeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-----------e-----eccccc--CCCEEEEEEeeCCC
Q 011978 397 VFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKL-----------K-----QDLPGH--ADEVFAVDWSPDGE 457 (473)
Q Consensus 397 ~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~-----------~-----~~~~~h--~~~i~~l~~s~d~~ 457 (473)
.|+-|..+|+++.|+|. ...|++++.|..|.|||+..-.- + +.+.-| +..+-.|.|++.-.
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 99999999999999994 45788888999999999853211 1 112224 34677889997743
Q ss_pred -EEEEEeCCCc
Q 011978 458 -KVASGGKDRV 467 (473)
Q Consensus 458 -~l~s~~~D~~ 467 (473)
+|+|.+.||.
T Consensus 422 G~lvsTa~dGf 432 (440)
T KOG0302|consen 422 GLLVSTAIDGF 432 (440)
T ss_pred CeEEEecccce
Confidence 6778888874
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.2e-22 Score=181.72 Aligned_cols=286 Identities=19% Similarity=0.308 Sum_probs=211.2
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-------
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA------- 216 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~------- 216 (473)
..+.+|++.|.|+...|.|.+|++|+.||++++|.+.+|+++.... ....|.+++|+|.... ..++.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~---~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDL---CVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCc---eeEEEEecCceEE
Confidence 4467999999999999999999999999999999999999876443 2347899999985321 112211
Q ss_pred -------------------------eCCCcEEEEECCC----CeEEEEecCccccEEEEEecCCC-eEEEeec---CCeE
Q 011978 217 -------------------------SKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTI 263 (473)
Q Consensus 217 -------------------------s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~---d~~i 263 (473)
..++.+..|.-.. .+.+.....|...|..+.|+..| +|++..- ...|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 1233444554321 11122334577889999999887 4555433 3567
Q ss_pred EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 343 (473)
.|.++...+...-+......+.++.|+|... .++.+ ....+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p------------------------------------~lfVa-Tq~~vRi 591 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP------------------------------------YLFVA-TQRSVRI 591 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCc------------------------------------eEEEE-eccceEE
Confidence 7888876655555555556677777776422 12222 2467899
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeC
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
||+.... ..+++.....+|.+++++|.|.-|+.|+.|+.+..+|+.-. ++.++++-|...+.+|+|++.=.++++|+.
T Consensus 592 YdL~kqe-lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 592 YDLSKQE-LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred EehhHHH-HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 9976532 23344445678999999999999999999999999999854 567788899999999999999999999999
Q ss_pred CCcEEEEECCCC---------ceeecccccCCC----EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 423 DSTLKVWDIRTQ---------KLKQDLPGHADE----VFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 423 Dg~i~iwd~~~~---------~~~~~~~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
||++.|+.-+-. -.++.+.||... |..+.|+|...+|.|+|.|++|++|.
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 999999864321 125678898765 88999999999999999999999995
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=5.4e-21 Score=175.91 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=181.9
Q ss_pred CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTL 241 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 241 (473)
..+++++.|+.+++||+.+++.... +..+. .+.++.|.| ++..+ ++++.++.+++||..+++....+..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~-~~~~l~~~~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQ-RPRGITLSK-----DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEE-EECCC-CCCceEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence 5688999999999999988775432 33333 345677765 34444 6778899999999999887766655433
Q ss_pred cEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 242 AVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 242 ~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
+..+.|++++. ++ +++.|+.+++||+.+++.+..+... ..+..++++++.
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg-------------------------- 126 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDG-------------------------- 126 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCC--------------------------
Confidence 46778888874 44 4567899999999988776665422 223445554432
Q ss_pred hhhcccCCCCceEEEecCCc-eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEE
Q 011978 320 RYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAV 397 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~ 397 (473)
..+++++.++ .+.+||........... ....+.+++|+|+|++|+.+ ..++.|++||+.+++.+..
T Consensus 127 ----------~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 127 ----------KIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred ----------CEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 2355555543 56677865432211111 22345779999999988654 4689999999999987766
Q ss_pred eeCCc-----c--CEEEEEEecCCCEEEE-EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE-eCCCcE
Q 011978 398 FRGHV-----G--PVYQISWSADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVL 468 (473)
Q Consensus 398 ~~~h~-----~--~v~~v~~sp~g~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~-~~D~~i 468 (473)
+..+. . ....++|+|++++++. .+.++.+.+||+.+++....+. +...+.+++|+|+|++|+++ +.++.|
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence 54321 1 2346889999998554 4556789999999887765543 34578999999999999886 468999
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
++|+
T Consensus 274 ~v~d 277 (300)
T TIGR03866 274 SVID 277 (300)
T ss_pred EEEE
Confidence 9996
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=185.26 Aligned_cols=277 Identities=20% Similarity=0.325 Sum_probs=190.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP 179 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~ 179 (473)
....|...|..+.|-|-...|+++++|.++++||+++.+.... +.+|...|.+++|.|+.. .+++|+.||.|.|||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3457999999999999666789999999999999998876655 789999999999999654 6778999999999997
Q ss_pred CCCccc------cccC--------------------CCcCCcEEE-EEeceeccCCCCceEEEeeC-CCcEEEEECCCCe
Q 011978 180 QTGKPS------GNPL--------------------SGHKKWITG-ISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRK 231 (473)
Q Consensus 180 ~~~~~~------~~~~--------------------~~~~~~v~~-i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~ 231 (473)
+-.... .... ..+...|.+ +. +.+..+...+++++. |+.|++||++...
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT---vv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT---VVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE---EEEEeccceeeeccCCCcceEEEeecccc
Confidence 532100 0000 112222222 00 112235568888887 9999999999876
Q ss_pred EEEEec--------Cc---cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 232 CVICLS--------GH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 232 ~~~~~~--------~h---~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
+..... -| ...++++..+..| +|++.+.|++|+.|++..-..- |.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s----------------P~------- 308 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS----------------PV------- 308 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC----------------ch-------
Confidence 554321 22 3456777776655 6777777999999997652210 00
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs 379 (473)
.++.+....++ -..-..+||+.+|++|+
T Consensus 309 -------------------------------~~~sg~~~~sf---------------------~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 309 -------------------------------AEFSGKLNSSF---------------------YVKSELSPDDCSLLSGS 336 (720)
T ss_pred -------------------------------hhccCccccee---------------------eeeeecCCCCceEeccC
Confidence 00111000000 01124689999999999
Q ss_pred CCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc--------------eeeccccc
Q 011978 380 FDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQK--------------LKQDLPGH 443 (473)
Q Consensus 380 ~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~~~h 443 (473)
.|...++|.+.+.+ ....+.+|.-.|++|+|.|.. .-+++++.|.+++||++..+- ....+++|
T Consensus 337 sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~ 416 (720)
T KOG0321|consen 337 SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGH 416 (720)
T ss_pred CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcc
Confidence 99999999988765 356678999999999998843 457778999999999986431 12344666
Q ss_pred CCCEEEEEEeeCCC
Q 011978 444 ADEVFAVDWSPDGE 457 (473)
Q Consensus 444 ~~~i~~l~~s~d~~ 457 (473)
...+..+.|+-.+.
T Consensus 417 ~p~~~nv~ss~~~t 430 (720)
T KOG0321|consen 417 LPQVLNVNSSLRKT 430 (720)
T ss_pred cccccccccccccc
Confidence 66666666654443
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2e-21 Score=163.18 Aligned_cols=236 Identities=22% Similarity=0.267 Sum_probs=176.9
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
-|..++.+++|.+ ...+++|+-||.|+.+|++++... .+..|..+|.|+.+++....+++|+.|++|++||.+.....
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 4899999999987 456899999999999999988654 35679999999999998889999999999999999863322
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEEEeecCCe
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~s~~~d~~ 262 (473)
.. ....+.|.++.. .+++++.|+.+..+.+||+++.....+. .+....+.|++..|++ -.+.++-||.
T Consensus 130 ~~--~d~~kkVy~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 130 GT--FDQGKKVYCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred cc--cccCceEEEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence 21 222336666653 3468999999999999999876544322 2345578899888865 3778899999
Q ss_pred EEEEECCCCceee----eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 263 IKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 263 i~~wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
|.+=.+....... .++.|- -..+
T Consensus 201 VavE~~d~s~~~~skkyaFkCHr-----------------------------------------------------~~~~ 227 (323)
T KOG1036|consen 201 VAVEYFDDSEEAQSKKYAFKCHR-----------------------------------------------------LSEK 227 (323)
T ss_pred EEEEccCCchHHhhhceeEEeee-----------------------------------------------------cccC
Confidence 8774433321110 011000 0001
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
++-. -.+|++++|+|-...||||+.||.|.+||+.+.+.+..+..-...|.+++|+.||..||
T Consensus 228 ~~~~-----------------~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 228 DTEI-----------------IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred CceE-----------------EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 1111 13589999999999999999999999999999988888876667899999999999999
Q ss_pred EEeC
Q 011978 419 SGSK 422 (473)
Q Consensus 419 s~s~ 422 (473)
.++.
T Consensus 291 ia~s 294 (323)
T KOG1036|consen 291 IASS 294 (323)
T ss_pred EEec
Confidence 9874
No 143
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.2e-19 Score=175.44 Aligned_cols=326 Identities=38% Similarity=0.668 Sum_probs=248.8
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCC-CCEEEEEE-CCCCC-eEEEEec-CCeEEEe
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHK-NWVLCIAW-SADGK-HLVSGSK-AGELQCW 177 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~-s~dg~-~l~s~~~-dg~i~iw 177 (473)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999998876 555555533 36777777 88887 5555444 8999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY 255 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~ 255 (473)
+..........+..|...|..+.|.|. ...+++++. |+.+++|+...+..+..+.+|...|.+++|.+++. ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPD-----GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCC-----CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 998722233457788999999988874 336777775 99999999999888888999999999999998874 44
Q ss_pred -EeecCCeEEEEECCCCceee-eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 256 -TGSQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 256 -s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+++.|+.+++||...+..+. .+..|.... ...+++. ...++
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~~ 257 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLLA 257 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEEE
Confidence 44999999999988777776 466655442 2123222 13577
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEe
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWS 411 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~s 411 (473)
+++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........ .|...+..+.|+
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 899999999999876554233336788899999999999999989999999999998887766665 788889999994
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEE-EeCCCcEEecc
Q 011978 412 ADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS-GGKDRVLKLWM 472 (473)
Q Consensus 412 p~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s-~~~D~~i~~w~ 472 (473)
+++..++.+ ..|+.+++|++............ ..+..+.+++ ...+.. +..++.+.+|.
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 343555555 68899999999877633333222 2288899988 544454 78899999986
No 144
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=8.8e-23 Score=167.46 Aligned_cols=286 Identities=21% Similarity=0.302 Sum_probs=194.9
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.+.+|.+.|+++-|-.+++ |.+|...|.|.+|++.+.+....+. .|...|+.+.--|+ ..|.+-+.|..+.+|++.-
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3457999999999988776 8899999999999999988777676 56788999998887 5788999999999999876
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCC----ceEEEeeCCC-cEEEEECCCCeEEEEe----cCccccEEEEEecCC-
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPC----RRFVSASKDG-DARIWDVSLRKCVICL----SGHTLAVTCVKWGGD- 251 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~----~~~~s~s~dg-~i~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~- 251 (473)
+.. ...|.-.++++.|.+....... ..++.-+... .+.+-|......+... .+..+.+.|..+..+
T Consensus 87 s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 87 SAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 542 3334445555555543322111 0111111100 0122222211111111 133456777776432
Q ss_pred C---eEEEeecCCeEEEEECCCCceeeee----------eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 252 G---VIYTGSQDCTIKVWETTQGKLIREL----------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 252 ~---~l~s~~~d~~i~~wd~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
+ .+++|-.+|.+-+||+.++..+-.+ ..|..+|.++.+.+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-------------------------- 216 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-------------------------- 216 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--------------------------
Confidence 2 4678889999999999988443333 345555555554422
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCC----CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~ 394 (473)
.++-++|+.+..+..|.+..... .......| ..+..+.+-||++.+||++.|+.||+|+.+++.+
T Consensus 217 ----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 217 ----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred ----------hcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence 11234555555666665543211 11111222 3477889999999999999999999999999999
Q ss_pred EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 395 VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 395 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
+.+++.|.+.|++|+|+||...+|.+|.|++|-+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999986
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=8.8e-22 Score=166.53 Aligned_cols=312 Identities=22% Similarity=0.378 Sum_probs=218.0
Q ss_pred cccCCcccEEEEEECC----CCCeEEEEeCCCeEEEEeCCCCceeEEE-----cCCCCCEEEEEECCC----CCeEEEEe
Q 011978 103 TIAGHTEAVLSVAFSP----DGRQLASGSGDTTVRLWDLNTQTPMFKC-----TGHKNWVLCIAWSAD----GKHLVSGS 169 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp----~~~~lat~s~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~d----g~~l~s~~ 169 (473)
..++|..+|..++|++ +...+++..+.+.+.+|.......+..+ ..|+.....++|+-| ..++|.|+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3467999999999984 2233444445668899987654422222 246667788888754 34788999
Q ss_pred cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEE
Q 011978 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCV 246 (473)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~ 246 (473)
.-|.|++.|+.+++... .+.+|...|+.+.+.|... ..++++|.|.+||+|++++..|+..+. ||...|.++
T Consensus 113 ~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~----qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRP----QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred ceeEEEEEecchhhhcc-ceeccCccchhhhcCCCCC----cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 99999999998877654 5789999999999998643 589999999999999999999998874 799999999
Q ss_pred EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
.|+.++ .+++++.|.+|++|++...+....++. +..++++. +.+.+..+
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~---------t~~pfpt~--------------- 237 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNK---------TTRPFPTP--------------- 237 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCC---------ccCcCCcc---------------
Confidence 999987 699999999999999875332211111 01111110 00000000
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CC------------
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TG------------ 392 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~------------ 392 (473)
...+.+ .....-|...|-|+.|- |.++++=|-++.|..|... -+
T Consensus 238 --------------~~~fp~-------fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 238 --------------KTHFPD-------FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred --------------cccccc-------ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 000000 01223466777777775 5889998999999999762 11
Q ss_pred -ceEEEeeCCccCEEEEEE--ecCCCEEEEEeCCCcEEEEECCCCcee--eccc--ccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 393 -KFVAVFRGHVGPVYQISW--SADSRLLLSGSKDSTLKVWDIRTQKLK--QDLP--GHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 393 -~~~~~~~~h~~~v~~v~~--sp~g~~l~s~s~Dg~i~iwd~~~~~~~--~~~~--~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
..+..+.-....|+-+.| .|-+++||.|...|.|++||++..... .++. .....|.+.+||.||..|+....|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 123344445566666655 466789999999999999999875441 2222 123578899999999999999999
Q ss_pred CcEEecc
Q 011978 466 RVLKLWM 472 (473)
Q Consensus 466 ~~i~~w~ 472 (473)
++|.=|+
T Consensus 375 ~~Vwrwd 381 (385)
T KOG1034|consen 375 GTVWRWD 381 (385)
T ss_pred CcEEEEE
Confidence 9998775
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=188.81 Aligned_cols=282 Identities=18% Similarity=0.304 Sum_probs=214.3
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCC---CCEEEEEECC-CCCeEEEEecCCeEEEeeCCC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHK---NWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~---~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~ 181 (473)
..++|+..++-..++.++. ...+||.++... .....+... ..+..+.|.. +.++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4566777788777777654 367777665321 111111111 1244566764 467999999999999999976
Q ss_pred --CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--CeEEEe
Q 011978 182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTG 257 (473)
Q Consensus 182 --~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~ 257 (473)
.......+..|+..++.+.|++... ..+++||.||.|++||++..+...++.+....|..+.|++. ..++++
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep----~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEP----NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCc----cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 2233346789999999999998654 58999999999999999999998889898899999999864 368888
Q ss_pred ecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 258 SQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 258 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
...|.+++||++.. ++...+..|.++|.++.++|+. +.|++|+
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr------------------------------------~~lATGG 239 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR------------------------------------EWLATGG 239 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC------------------------------------ceeeecC
Confidence 99999999999875 5567788999999999999863 4599999
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE--CCCcEEEEeCCCCc-eEEEeeCCccCEEEEEEec
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS--FDKSIKLWNGTTGK-FVAVFRGHVGPVYQISWSA 412 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs--~d~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp 412 (473)
.|+.+++||....+........-...+.+|.|-|+.+ .||+++ .|-.|+|||++..- +..++..|...++.++|..
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 9999999998654433333333346789999999766 466665 47789999998654 4567889999999999965
Q ss_pred -CCCEEEEEeCCCcEEEEECC
Q 011978 413 -DSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 413 -~g~~l~s~s~Dg~i~iwd~~ 432 (473)
|...|.+++.||+|..-.++
T Consensus 320 ~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred CCceeeEeecCccHHHHhhhh
Confidence 45578899999987654433
No 147
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.1e-22 Score=161.80 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=165.5
Q ss_pred cccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCC
Q 011978 99 RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG 172 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg 172 (473)
+...+|.||.++|+.++|.. .|..||+++.||.|.||.-++++ +......|...|.+++|.|. |-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 46678999999999999975 69999999999999999987763 34456789999999999985 66889999999
Q ss_pred eEEEeeCCCC--ccccccCCCcCCcEEEEEeceeccC---------CCCceEEEeeCCCcEEEEECCCCeE--EEEecCc
Q 011978 173 ELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLN---------APCRRFVSASKDGDARIWDVSLRKC--VICLSGH 239 (473)
Q Consensus 173 ~i~iwd~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~---------~~~~~~~s~s~dg~i~iwd~~~~~~--~~~~~~h 239 (473)
.|.+.+.++. -........|.-.|+++.|.|.... ....+|++|+-|..|+||+...+.- -..+.+|
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH 206 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence 9999887653 2334567889999999999986321 1236899999999999999887532 2347789
Q ss_pred cccEEEEEecCC-----CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978 240 TLAVTCVKWGGD-----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 240 ~~~v~~~~~~~~-----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
..-|+.++|.|. ..+++++.||++.||-.....
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~------------------------------------------ 244 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY------------------------------------------ 244 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc------------------------------------------
Confidence 999999998764 257777777777777532100
Q ss_pred HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
.....+.+......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus 245 ----------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 ----------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 000011112234568899999999999999999999999643
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.1e-21 Score=161.85 Aligned_cols=217 Identities=22% Similarity=0.386 Sum_probs=157.0
Q ss_pred CCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCcc--------------ccccCCCcCCcEEEEEeceeccCCCCce
Q 011978 148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR 212 (473)
Q Consensus 148 ~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~ 212 (473)
.|.+.|.++...+ .|+++++|+.||.|.+||+++... ...-..+|+-.|..+.|-|. +...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCce
Confidence 5788899999887 689999999999999999976431 11223578888999999996 4468
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC----CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 288 (473)
|.+++.|.++++||..+-+....++- ...|.+-+++|- .++++|..|-.|++.|+..|...+.+.+|...|.++.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 99999999999999998877666542 234666666652 3577888899999999999988877777766666666
Q ss_pred ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 368 (473)
++|.+.+ .|++|+.|+.+++||++...
T Consensus 196 Wsp~~e~-----------------------------------vLatgsaDg~irlWDiRras------------------ 222 (397)
T KOG4283|consen 196 WSPSSEW-----------------------------------VLATGSADGAIRLWDIRRAS------------------ 222 (397)
T ss_pred eccCcee-----------------------------------EEEecCCCceEEEEEeeccc------------------
Confidence 6554321 35556666666666543211
Q ss_pred CCCCcEEEEEECCCcEEEEeCCCCceEE---EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 369 SPDGQWVASASFDKSIKLWNGTTGKFVA---VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 369 sp~g~~lasgs~d~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
|.+++-|...++... .-..|.+.|+.++|+.||.++++++.|..+++|+...|+
T Consensus 223 -------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 223 -------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -------------ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 112222322222211 223688999999999999999999999999999998764
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.2e-21 Score=170.97 Aligned_cols=288 Identities=19% Similarity=0.251 Sum_probs=207.1
Q ss_pred ccCCcccEEEEEECCCCC--eEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEE
Q 011978 104 IAGHTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC 176 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~--~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~i 176 (473)
+.-|...|++++|+|... .+|+|..-|+|-+||+.++. .+..+..|..+|.+|.|+|. -.++++.++||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 345889999999999864 67888889999999996433 34556789999999999994 468999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEecCCC--e
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG--V 253 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~--~ 253 (473)
=|++++.... .+...+. .+.|+...++.....++.+..-|...+||.+++.. ...+.-|...|.+++++|-. .
T Consensus 262 ~D~~~~i~e~-v~s~~~d---~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 262 QDFEGNISEE-VLSLDTD---NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeecchhhHH-HhhcCcc---ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9998754221 1111111 12233334444556677788878999999998765 44556788899999999865 6
Q ss_pred EEEeecCCeEEEEECCCCcee----eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 254 IYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
++|++.|++.+|||+++-..- -..-.|...|.+..++|..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~------------------------------------ 381 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG------------------------------------ 381 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC------------------------------------
Confidence 999999999999998864322 2334577788888888752
Q ss_pred ceEEEecCCceEEEEeCC-C-CCCCeeeecCcc----c--ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978 330 ERLVSGSDDFTMFLWEPA-V-SKQPKTRMTGHQ----Q--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~-~-~~~~~~~~~~~~----~--~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h 401 (473)
..+++.+.|..|++||.. . ...+...+..|. . .....+|.|+..++++|-.-..|-++|...++.+..+-..
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 248999999999999973 1 111112222222 1 2345689999999999999999999999988877665332
Q ss_pred c-cCEEE-EEEecCCCEEEEE-eCCCcEEEEEC
Q 011978 402 V-GPVYQ-ISWSADSRLLLSG-SKDSTLKVWDI 431 (473)
Q Consensus 402 ~-~~v~~-v~~sp~g~~l~s~-s~Dg~i~iwd~ 431 (473)
. ..|.+ .+|+|-+..+++| +..|.|+||--
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccccccceeecccccceeccCCccceEEEEec
Confidence 2 24444 4799988745554 56778888843
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.5e-21 Score=169.19 Aligned_cols=283 Identities=21% Similarity=0.341 Sum_probs=197.4
Q ss_pred EEEECCCCCeEEEEe-C--CCeEEEEeCCCCceeEEEcCCC----CCEEEEEECC-------CCCeEEEEecCCeEEEee
Q 011978 113 SVAFSPDGRQLASGS-G--DTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSA-------DGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 113 ~~~~sp~~~~lat~s-~--d~~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~-------dg~~l~s~~~dg~i~iwd 178 (473)
.+.+-|+...+++|- . ...+.+|=.+...+- ....|. ..-.|++|.. .|+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 345667666666653 2 234444433322211 111222 2235666642 367999999999999999
Q ss_pred CCCCcc--------------------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978 179 PQTGKP--------------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 179 ~~~~~~--------------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~ 238 (473)
+.--.. ......+|+..|-.+.|+... .+.+++||.|.+|++||+.++++...+..
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~----~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF----RNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc----ceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 752110 111234677777777776532 35799999999999999999999999999
Q ss_pred ccccEEEEEecCCC--eEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 239 h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
|...|.++.|++.. .|++|+.|+++++.|.+..... ..++. ...|..+++.+.
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~~----------------------- 340 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDPH----------------------- 340 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecCC-----------------------
Confidence 99999999998754 6999999999999999842111 11111 223555555432
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCce
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF 394 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~ 394 (473)
.+..++++.+||+++-+|.+....+...+..|.+.|.++++++. ..++++++.|+.|++|++..-..
T Consensus 341 ------------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 341 ------------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ------------CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 24568899999999999999988899999999999999999985 45789999999999999764332
Q ss_pred --EEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCce
Q 011978 395 --VAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 395 --~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
+..-.-..+...|.++.|+-. +||.|+..+.++|||+.+...
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 222111234467777788654 677788888899999987543
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.5e-22 Score=195.77 Aligned_cols=246 Identities=22% Similarity=0.380 Sum_probs=192.7
Q ss_pred cEEEEEECCCCCe----EEEEeCCCeEEEEeCCCC------ceeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEee
Q 011978 110 AVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWD 178 (473)
Q Consensus 110 ~V~~~~~sp~~~~----lat~s~d~~i~iwd~~~~------~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd 178 (473)
.-+.++|.+.|.. ||.|..||.|.+||...- ..+..+..|.+.|..+.|++... .|++|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4567899988776 788889999999997541 12445678999999999999765 999999999999999
Q ss_pred CCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc--cEEEEEecCCC--e
Q 011978 179 PQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG--V 253 (473)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~--~ 253 (473)
+.+-+..... -..-...|.+++|+.. ....|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+. .
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 9874432222 1224567899999763 345789999999999999999888777765544 46778898876 4
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+++++.|..
T Consensus 222 l~~As~dd~----------------------------------------------------------------------- 230 (1049)
T KOG0307|consen 222 LLVASGDDS----------------------------------------------------------------------- 230 (1049)
T ss_pred eeeecCCCC-----------------------------------------------------------------------
Confidence 555544421
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp 412 (473)
+-.|.+||++....+...+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+++..+.|+|
T Consensus 231 ----~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 231 ----APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred ----CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 11244555554455566667899999999999965 8999999999999999999999999988889999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCC
Q 011978 413 DSR-LLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 413 ~g~-~l~s~s~Dg~i~iwd~~~~ 434 (473)
..- .++.++-||.|-||.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 654 8888999999999998764
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.4e-21 Score=167.57 Aligned_cols=276 Identities=22% Similarity=0.347 Sum_probs=195.5
Q ss_pred EEECCCCCeEEEEecCC-----eEEEeeCCCCccccccCCCcCCcE----EEEEecee--ccCCCCceEEEeeCCCcEEE
Q 011978 156 IAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNPLSGHKKWI----TGISWEPV--HLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 156 l~~s~dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v----~~i~~~~~--~~~~~~~~~~s~s~dg~i~i 224 (473)
+..-|+...|+++-.+. .+++|+..... .+..|.-.+ -|+.|... .-...+++++.|+.|..|.|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 44456666777665432 25556543211 122232212 23344322 22345679999999999999
Q ss_pred EECCCCeEE---------------------EEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccC
Q 011978 225 WDVSLRKCV---------------------ICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHG 281 (473)
Q Consensus 225 wd~~~~~~~---------------------~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 281 (473)
||+.-...+ ....+|+.+|..++|+.. +.|++|+.|.+|++||+.+|++..++..|+
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 998643211 012368889999998864 579999999999999999999999999999
Q ss_pred ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc
Q 011978 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361 (473)
Q Consensus 282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 361 (473)
..|.++.+++. .+..+++|+.|+++.+.|.+........ -.-.+
T Consensus 287 k~Vq~l~wh~~-----------------------------------~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk~~g 330 (463)
T KOG0270|consen 287 KKVQTLEWHPY-----------------------------------EPSVLLSGSYDGTVALKDCRDPSNSGKE-WKFDG 330 (463)
T ss_pred CceeEEEecCC-----------------------------------CceEEEeccccceEEeeeccCccccCce-EEecc
Confidence 99999998864 3567999999999999998742221111 11235
Q ss_pred ceeEEEECCCC-cEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceee
Q 011978 362 LVNHVYFSPDG-QWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 362 ~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
.|..++|.|.. ..+.++..||+|+-+|.+.. +++.+++.|.++|.++++++.- .+|+++|.|++|++|++.......
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 68889999965 46677789999999999875 8999999999999999999854 579999999999999986533211
Q ss_pred cccccC---CCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978 439 DLPGHA---DEVFAVDWSPDGE-KVASGGKDRVLKLWM 472 (473)
Q Consensus 439 ~~~~h~---~~i~~l~~s~d~~-~l~s~~~D~~i~~w~ 472 (473)
...|. +...+.++.|+-- .||.||..+.++||+
T Consensus 411 -v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 411 -VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred -cccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 11222 2344556666643 567888888899996
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-22 Score=194.95 Aligned_cols=278 Identities=23% Similarity=0.473 Sum_probs=206.5
Q ss_pred EEEECCCCC-eEEEE----------eCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCCCCe----EEEEecC
Q 011978 113 SVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA 171 (473)
Q Consensus 113 ~~~~sp~~~-~lat~----------s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~dg~~----l~s~~~d 171 (473)
.++|+|++. ++|+| +.+.++.||.+.-.. +...+. -......|+|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888776 44443 345567777654222 112221 2456889999988776 8888899
Q ss_pred CeEEEeeCCC---Cc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEE
Q 011978 172 GELQCWDPQT---GK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT 244 (473)
Q Consensus 172 g~i~iwd~~~---~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~ 244 (473)
|.|.+||... +. ........|++.|.++.|++.. ++.+++|+.||.|.|||+..-+...... .....|.
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q----~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ----GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccC----CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999865 21 1223457899999999998854 3489999999999999998755444432 2346799
Q ss_pred EEEecCC--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 245 ~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
|++|+.. .+|++++.+|.+.|||++..+.+-.+..+.
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----------------------------------------- 204 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----------------------------------------- 204 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-----------------------------------------
Confidence 9999854 367888889999999988765433221110
Q ss_pred cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCC---cEEEEeCCCC-ceEEE
Q 011978 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDK---SIKLWNGTTG-KFVAV 397 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~---~v~lwd~~~~-~~~~~ 397 (473)
....+..++|+|++ ..|++++.|. .|.+||++.. ..+++
T Consensus 205 ------------------------------------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 205 ------------------------------------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred ------------------------------------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 01236678999975 4566666553 6999998854 56788
Q ss_pred eeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978 398 FRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM 472 (473)
Q Consensus 398 ~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~ 472 (473)
+++|...|.++.|++.+ .+|+|++.|+.|.+|+.++++.+..+....+.++.+.|.|... .++.++-||.|-|+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 89999999999999965 8999999999999999999999999988788999999999876 778889999998863
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=6e-21 Score=175.65 Aligned_cols=276 Identities=20% Similarity=0.360 Sum_probs=207.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
.|..++|-|||..|+.+.+ ..+.+||.+.+..+..+++|.+.|.|++|+.||+.+++|+.|+.|.+|+.+- .+...
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 7899999999998877654 4799999999999999999999999999999999999999999999998643 22345
Q ss_pred CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEEC
Q 011978 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWET 268 (473)
Q Consensus 190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~ 268 (473)
-.|.+.|.++.|+|.. ..+++|+- ...-+|.......... .-...|.+.+|+.||. ++.|-.+|+|.+-+-
T Consensus 90 YSH~D~IQCMsFNP~~-----h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-----HQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred eccCCeeeEeecCchH-----HHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 6799999999999864 35666653 3456676543322211 1234677889999985 778999999999853
Q ss_pred CCCceeeee---eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 269 TQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 269 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
+|+....+ -+.+.+|.+++++|.... ...+.++......++.++.
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~-------------------------------G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGE-------------------------------GRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCC-------------------------------CccceEEEEeccceeEEEE
Confidence 33332223 346778999988875320 1234567777777887777
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
+....-.+.+..+ -...|+.+.|+|.|+..|+.|+.+++|- +.|-.+.++.....+|+.|+..|+++.++.|+.||+
T Consensus 210 LsG~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 210 LSGKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred ecceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 6543222222222 2346889999999999999999999995 456667777666779999999999999999999999
Q ss_pred EEEEECC
Q 011978 426 LKVWDIR 432 (473)
Q Consensus 426 i~iwd~~ 432 (473)
|-.|++.
T Consensus 287 iACyNl~ 293 (1081)
T KOG1538|consen 287 IACYNLI 293 (1081)
T ss_pred eehhhhH
Confidence 9999864
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=2.2e-20 Score=170.96 Aligned_cols=139 Identities=29% Similarity=0.509 Sum_probs=115.6
Q ss_pred CCceEEEecCCceEEEEeCCCCC------CCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeC
Q 011978 328 APERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (473)
Q Consensus 328 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~ 400 (473)
.+++|+.+++|+.|++|.+.... .+...+..|...|.++.|+| ....||+++.|.+|++||+.+++....+.+
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 35689999999999999875433 34567788999999999999 567899999999999999999999999999
Q ss_pred CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeccccc-CCCEEEEEEeeCCCEEEEEeCCC
Q 011978 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGH-ADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
|++.|.+++|||||+.+|+.+.||+|++|+.++++. +++-.+- ..+-..+.|--||+++++.|-|+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999999999999999999887543 2222221 12334577888999999988875
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=162.18 Aligned_cols=216 Identities=23% Similarity=0.336 Sum_probs=154.5
Q ss_pred EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
.+++|.+.|++|+|+.||++|++++.|+.|++|++++-. ...|.. +..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~----~R~----------------------- 128 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRC----IRQ----------------------- 128 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhH----hhc-----------------------
Confidence 467999999999999999999999999999999987632 222310 000
Q ss_pred EECCCCeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
++ -.+| -+.+.|.||. .+++.....++++|.....+- +
T Consensus 129 -nv--------e~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----G----------------------- 168 (420)
T KOG2096|consen 129 -NV--------EYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----G----------------------- 168 (420)
T ss_pred -cc--------cCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----C-----------------------
Confidence 00 0112 2456677775 456666777888886432110 0
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
+......-||- ......|+-.+..+-...++.+|++++.|.
T Consensus 169 ---------------------------------~~~~~~v~~D~------~~f~~kh~v~~i~iGiA~~~k~imsas~dt 209 (420)
T KOG2096|consen 169 ---------------------------------SGSHHFVHIDN------LEFERKHQVDIINIGIAGNAKYIMSASLDT 209 (420)
T ss_pred ---------------------------------CCCcccccccc------cccchhcccceEEEeecCCceEEEEecCCC
Confidence 00000011120 011123444555566677889999999999
Q ss_pred cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC---CCc-----eeecccccCCCEEEEEEee
Q 011978 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR---TQK-----LKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~---~~~-----~~~~~~~h~~~i~~l~~s~ 454 (473)
.|.+|+++ |+.+..+......-+..+.||+|+++|+++---.|++|.+- .|. ....++||...|..++|||
T Consensus 210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 99999998 88888877666666778899999999999988889999863 222 2457899999999999999
Q ss_pred CCCEEEEEeCCCcEEecc
Q 011978 455 DGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 455 d~~~l~s~~~D~~i~~w~ 472 (473)
+.+.++++|.||+++||+
T Consensus 289 ~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred CcceeEEEecCCcEEEee
Confidence 999999999999999996
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=4e-20 Score=160.82 Aligned_cols=308 Identities=26% Similarity=0.383 Sum_probs=206.6
Q ss_pred cccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCce---------eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 108 ~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
..+|..+.|.++.. .+|||+.|..|+||-++...+ +..+..|...|.++.|+|+|..|++|+.+|++.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35789999999877 999999999999998764321 23467899999999999999999999999999999
Q ss_pred eCC--------C-----C--ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc
Q 011978 178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (473)
Q Consensus 178 d~~--------~-----~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 242 (473)
... + . -.....+.+|.+.+..+.|.| +...+++++.|.++++||+..+.....+.+|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-----d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-----DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-----CCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 765 2 0 012334677999999999988 4457899999999999999999999999999999
Q ss_pred EEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc-cCCCcccCCHHHHHHHHHhh
Q 011978 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF-DHTGKQYSSPEEMKKAALER 320 (473)
Q Consensus 243 v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (473)
+..++|++-+ .+++-+.|...+.+.+...+.+..... ..+...+..+........+ |.+.+. .+.+
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~--~~m~~~~~~~~e~~s~rLfhDeTlks----------FFrR 235 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL--DIMPAKAFNEREGKSTRLFHDETLKS----------FFRR 235 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee--eEeeecccCCCCcceeeeeecCchhh----------hhhh
Confidence 9999999866 577888888777776554433322210 0000001111000000000 000000 0000
Q ss_pred hhcccCCCCceEEE-------ecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECC------------------CCc
Q 011978 321 YNKIKGNAPERLVS-------GSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------------------DGQ 373 (473)
Q Consensus 321 ~~~~~~~~~~~l~~-------~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------------------~g~ 373 (473)
. .+. .....+++ +.. -++.++++....++|...+.+.......+.|+| -+.
T Consensus 236 l-sfT-PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 236 L-SFT-PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred c-ccC-CCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 0 000 00011111 111 234455655555556666666555666666555 223
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 374 WVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 374 ~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
.+|.++.+ .|.+||.++..++.... -|-..|++++|++||..|+..|.||..-+-.+...+
T Consensus 314 vfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 314 VFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 46666654 79999999888776654 488899999999999999999999988877666543
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2.9e-18 Score=165.66 Aligned_cols=327 Identities=38% Similarity=0.653 Sum_probs=244.3
Q ss_pred ccccCCc-ccEEEEEE-CCCCC-eEEEEeC-CCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEE
Q 011978 102 ATIAGHT-EAVLSVAF-SPDGR-QLASGSG-DTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ 175 (473)
Q Consensus 102 ~~~~gh~-~~V~~~~~-sp~~~-~lat~s~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~ 175 (473)
..+.++. ..+..+.+ ++++. .++..+. |+.+++||... ......+..|...|.+++|+|+++.+++++. |+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 3444433 36777777 88888 4555444 99999999988 6667778899999999999999998888885 99999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccEEEEEecCCC-e
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDG-V 253 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~ 253 (473)
+|+..+++.. ..+.+|...+.++.|.|... ..+++++.|+.+++||...+.... .+.+|.... ...|.+++ .
T Consensus 182 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 182 LWDLRTGKPL-STLAGHTDPVSSLAFSPDGG----LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred EEEcCCCceE-EeeccCCCceEEEEEcCCcc----eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE
Confidence 9999875443 34566999999999985321 245556999999999998888877 688888775 44788887 6
Q ss_pred EEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 254 IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+++++.|+.+++|+...... ...+..|...+.++.+.+. ...+
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------~~~~ 299 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------------------------GKLL 299 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------------------------CCEE
Confidence 77899999999999986654 4444566677777766542 2345
Q ss_pred EEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
++++.|+.+.+|+........... ..|...+..+.|.+++..++.+ ..|+.+++|+.............. .+..+.+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSF 378 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEE
Confidence 567778889999765544332222 4677778999994343556655 688999999998877333333222 2889999
Q ss_pred ecCCCEEEE-EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 411 SADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++ ...+.. +..++.+.+|+............+...+....+++++..+++++.+..+++|.
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 98 544444 68899999999998777666554436789999999999999999999999996
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=188.69 Aligned_cols=275 Identities=27% Similarity=0.437 Sum_probs=202.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
+..+.||...|.|+.|...|.++++|+.|..++||.+++..++..+.||++.|+.++.+.+...+++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC----ccccEEEEEecCCC-eEE
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~-~l~ 255 (473)
++..+. .+.+|++.|++++|+| +.+.+.||++++||.+-.-.++.-.. ...-+.++.|..++ .+.
T Consensus 263 ~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 263 DGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred CCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 987654 5889999999999998 34778999999999872111111000 00112222222222 233
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
|++.|+.-..|....
T Consensus 333 Tgs~d~ea~n~e~~~----------------------------------------------------------------- 347 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQ----------------------------------------------------------------- 347 (1113)
T ss_pred cccCCcccccchhhH-----------------------------------------------------------------
Confidence 444444433332211
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
. ..+...+.-+.++.+ ..+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.++|-+
T Consensus 348 -------------l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 348 -------------L-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred -------------h-------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 0 000000011111111 1456666677889999999999999999999999999999954
Q ss_pred -CEEEEEeCCCcEEEEECCCCceeecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 415 -RLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 415 -~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+...+++.||...|||+..+..++.. .+| ..+..-.||+||+.++....-|.+.|.
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 55668899999999999887665433 344 557788999999999988888888775
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=4.4e-21 Score=165.16 Aligned_cols=204 Identities=26% Similarity=0.484 Sum_probs=156.2
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----------------CeEEEEecCccccEEEEEecC--
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------------RKCVICLSGHTLAVTCVKWGG-- 250 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~-- 250 (473)
...|.+.++.+.-.+.. .....++-+..|.|.|||+.. .+.++++.+|...=..+.|+|
T Consensus 147 ~i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 34566667776655533 223566778899999999753 244566777777777788876
Q ss_pred CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
.|.+++|..-+.|++|...+|...
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~-------------------------------------------------------- 247 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWK-------------------------------------------------------- 247 (440)
T ss_pred ccccccCccccceEeeeeccCcee--------------------------------------------------------
Confidence 456777777777777765544321
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC---ceEEEeeCCccCEE
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVY 406 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~~v~ 406 (473)
.....+.+|...|..++|||. ..+||+||.||+|+|||++.+ .++.+ +.|.+-|+
T Consensus 248 --------------------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 248 --------------------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred --------------------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 001224468889999999995 568999999999999999988 33333 88999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCC---CceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEecc
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM 472 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w~ 472 (473)
-+.|+-+-.+||+|+.||+++|||++. ++...+++-|..+|+++.|+|.. ..|+++|.|.+|.+|+
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 999999888999999999999999986 44566788899999999999864 5778999999999996
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=6.7e-20 Score=154.90 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=200.4
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-----cccccCCCc-------CCcEEEEEeceec--cCCCCceEEEee
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-----PSGNPLSGH-------KKWITGISWEPVH--LNAPCRRFVSAS 217 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~-------~~~v~~i~~~~~~--~~~~~~~~~s~s 217 (473)
-...+.|||||..|++-+.|..+.+|++-... ........| ...|..-.|-+.. ..++...+++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567899999999999999999999874211 000011111 2234455554422 223456889999
Q ss_pred CCCcEEEEECCCCeEEEEecC--ccc---cEEEEEecCCCeEEEeecCCeEEEEEC-CCCceeeee-------eccCceE
Q 011978 218 KDGDARIWDVSLRKCVICLSG--HTL---AVTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIREL-------KGHGHWV 284 (473)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~-------~~~~~~v 284 (473)
.+.-|++||.-+++....+.+ |.. +..|++|++||.-+-++..++|++||. +.|+..... .+....+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999999887665543 333 345899999997666778899999998 666543221 1224456
Q ss_pred EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (473)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (473)
.+++++|.. +..++.++....+-|+.-. ...+...+.+|.+.|+
T Consensus 211 sc~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 211 SCFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVT 254 (406)
T ss_pred eeeeccCCC-----------------------------------CcceeeecccceeeeEecC-CCCceeeecccCCCee
Confidence 666666541 2346777777776666533 3456677789999999
Q ss_pred EEEECCCCcEEEEEEC-CCcEEEEeCCC-CceEEEeeCCcc-CEEEEE--EecCCCEEEEEeCCCcEEEEECCC-Cceee
Q 011978 365 HVYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVG-PVYQIS--WSADSRLLLSGSKDSTLKVWDIRT-QKLKQ 438 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~-d~~v~lwd~~~-~~~~~~~~~h~~-~v~~v~--~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~ 438 (473)
.++|+++|+.|.+|+. |-.|..||++. +..+..+..|.+ .-..+- ..|+|++||+|+.||.|++||+.. +....
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 9999999999999975 66899999985 456667777765 333344 468999999999999999999987 55556
Q ss_pred cccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 439 DLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 439 ~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
.+..|.+-++.++++|--..+|+++..
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccceecCcccceeeeccCc
Confidence 666788999999999998888888764
No 162
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=3.6e-21 Score=171.47 Aligned_cols=237 Identities=21% Similarity=0.389 Sum_probs=180.8
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc---C--CCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---L--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~---~--~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
.|..-|.+++.|...+++++|+. |-|++||+..... ..+ + ......|..+... ++++.+++|+.-.++
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~-----pdgrtLivGGeastl 489 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLL-----PDGRTLIVGGEASTL 489 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEec-----CCCceEEecccccee
Confidence 57777888999988899999875 8899999864310 011 1 1112334444433 467889999999999
Q ss_pred EEEECCCCeEE--EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 223 RIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 223 ~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.|||+...... ..+..-.-++..++.++|. ..+++..||.|.|||+.+...+++++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------------------- 548 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------- 548 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc---------------------
Confidence 99999764332 2233333455667778886 46788899999999988765555443
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs 379 (473)
||.+.+.||.+++||..|-||+
T Consensus 549 ----------------------------------------------------------GhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 549 ----------------------------------------------------------GHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred ----------------------------------------------------------CCCCCceeEEecCCCceeecCC
Confidence 5566778899999999999999
Q ss_pred CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE
Q 011978 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 459 (473)
Q Consensus 380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l 459 (473)
.|++||-||+++++.+.... ....|.++.++|++.+|+.|-..+.+.+-.... .....+..|++-|.+|.|.+.|+++
T Consensus 571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCcee
Confidence 99999999999998665543 346799999999999999999999888877654 3345667789999999999999999
Q ss_pred EEEeCCCcEEecc
Q 011978 460 ASGGKDRVLKLWM 472 (473)
Q Consensus 460 ~s~~~D~~i~~w~ 472 (473)
+|.|.|+.+..|.
T Consensus 649 vStGkDnlLnawr 661 (705)
T KOG0639|consen 649 VSTGKDNLLNAWR 661 (705)
T ss_pred eecCchhhhhhcc
Confidence 9999999999885
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.7e-20 Score=154.77 Aligned_cols=280 Identities=18% Similarity=0.296 Sum_probs=198.2
Q ss_pred EEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE
Q 011978 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~ 232 (473)
..|+.|++.|.+||+|+.||.|.|||..+.. ....+.+|..+|.+++|++ +++.++|+|.|-.+++||+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence 6899999999999999999999999998876 4457899999999999998 678999999999999999999998
Q ss_pred EEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
++.+. ...+|+.+.|.|.. ..++.-.+..-.+-++..++. . .+..+++..+...+.
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~---------~Lp~d~d~dln~sas---------- 157 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--S---------VLPKDDDGDLNSSAS---------- 157 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--e---------eccCCCccccccccc----------
Confidence 77664 45688999998743 344333333333333332111 0 011111110000000
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
.......++.+++|...|.+.+++....+.....-......|..+.|+-.|+.|+.-+.|+.||.|+.+
T Consensus 158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred -----------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 000112356799999999999999765433222111223568889999999999999999999999875
Q ss_pred C-------CceE--EEeeC--CccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccC-CCEEEEEEeeCCC
Q 011978 391 T-------GKFV--AVFRG--HVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGE 457 (473)
Q Consensus 391 ~-------~~~~--~~~~~--h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~ 457 (473)
. +++. +.++. ..-.=.+++||.||.|++.++. -..++||.-..|.+.+.+.|.. .....+.|+|-..
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence 2 1111 11111 1123356889999999887764 4579999999999999998876 4677899999988
Q ss_pred EEEEEeCCCcEEecc
Q 011978 458 KVASGGKDRVLKLWM 472 (473)
Q Consensus 458 ~l~s~~~D~~i~~w~ 472 (473)
.+++- ..|.+.+|.
T Consensus 307 ~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 307 IIASI-ASGVVYIWA 320 (405)
T ss_pred eeeec-cCCceEEEE
Confidence 88888 678999995
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-20 Score=161.88 Aligned_cols=320 Identities=17% Similarity=0.256 Sum_probs=219.6
Q ss_pred HhHHHhcCCCcccEEEEEEEeceeEEEeecccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC------CCc
Q 011978 68 GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQT 141 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~------~~~ 141 (473)
..||.+.++...+.+.-.|+|...- ..-|..-+.+|.+.|+++.|+.++++||+|+.|..+++|++. +.+
T Consensus 20 ~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K 95 (609)
T KOG4227|consen 20 ESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK 95 (609)
T ss_pred eeeeeecccCCChhhhhhhchhhhh----cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC
Confidence 3444445555444444444443221 234556678999999999999999999999999999999974 334
Q ss_pred eeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC---CcEEEEEeceeccCCCCceEEEee
Q 011978 142 PMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSAS 217 (473)
Q Consensus 142 ~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~~~~s~s 217 (473)
|+.... .|...|.||+|....+.+++|..+++|...|+++.+.+. ...|. +.|..+..+|. .+.|++.+
T Consensus 96 PI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~-----DN~~~~~t 168 (609)
T KOG4227|consen 96 PIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPT-----DNTLIVVT 168 (609)
T ss_pred CceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCCC-----CceEEEEe
Confidence 444332 455789999999999999999999999999999877543 23343 47888887775 35899999
Q ss_pred CCCcEEEEECCCCe---EEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccc
Q 011978 218 KDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (473)
Q Consensus 218 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~ 292 (473)
.++.|.+||.+... .+..+..-......+.|+|.. +|++.+..+-+.+||.+..+.-
T Consensus 169 ~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------------ 230 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------------ 230 (609)
T ss_pred cCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch------------------
Confidence 99999999998654 122233333455667787754 6778888888888887643210
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g 372 (473)
+.++... .-+......-.++.|+|+|
T Consensus 231 -------------------------~~~~~~~-----------------------------~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 231 -------------------------VYQRSMF-----------------------------KGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred -------------------------HHhhhcc-----------------------------ccCcccchhhhheeeCCCC
Confidence 0000000 0000000112456789999
Q ss_pred cEEEEEECCCcEEEEeCCCCceE-EEeeCCc-------cCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----C-----
Q 011978 373 QWVASASFDKSIKLWNGTTGKFV-AVFRGHV-------GPVYQISWSADSRLLLSGSKDSTLKVWDIRT-----Q----- 434 (473)
Q Consensus 373 ~~lasgs~d~~v~lwd~~~~~~~-~~~~~h~-------~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-----~----- 434 (473)
+.+.+--....-.+||+.+..+. ..+ .|. ..+.+++|-.| .-+++||.+=.|++|.+.. |
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccC
Confidence 88887665555567787764432 222 232 23566777644 4599999999999998742 1
Q ss_pred -------------ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 435 -------------KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 435 -------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+....++||..-++.+.|+|...+|+|.|-.+.++||.
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12346789999999999999999999999999999995
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=7.5e-20 Score=152.27 Aligned_cols=253 Identities=21% Similarity=0.362 Sum_probs=185.2
Q ss_pred ccccCCcccEEEEEECCCCCeE-EEEeC---C----CeEEEEeCCCCc---------eeEEEc-CCCCCEEEEEECCCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQL-ASGSG---D----TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADGK 163 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~l-at~s~---d----~~i~iwd~~~~~---------~~~~~~-~~~~~v~~l~~s~dg~ 163 (473)
..+.-|.+.|+.++-+|..+.+ +|+.. | -.+.||.+.... .+..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4556688999999999977654 55532 2 247899885321 122222 3445899999999999
Q ss_pred eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE
Q 011978 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (473)
Q Consensus 164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 243 (473)
.|++-. |..|.+|+++.+..+...+ ..+++. ++....
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev-----------------------~ss~s~-------------------e~~~~f 173 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEV-----------------------LSSESA-------------------EMRHSF 173 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheee-----------------------cccccc-------------------ccccee
Confidence 999876 8999999998765421100 011111 122233
Q ss_pred EEEEecC--CCeEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978 244 TCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (473)
Q Consensus 244 ~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
++-+|+| ++.-+....|+++..||+++.+....+ ..|++.|..+.+.|+.
T Consensus 174 tsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk--------------------------- 226 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK--------------------------- 226 (370)
T ss_pred cccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc---------------------------
Confidence 4455665 455566777899999999987766555 4688889888887752
Q ss_pred hhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-------
Q 011978 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------- 392 (473)
Q Consensus 321 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~------- 392 (473)
...|++|++|+.+++||.+..+.+...+.+|.-+|.+|.|+| ..++|.+|+.|..|.+|...+-
T Consensus 227 --------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~ 298 (370)
T KOG1007|consen 227 --------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIE 298 (370)
T ss_pred --------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccc
Confidence 236899999999999999999999999999999999999999 4678999999999999954210
Q ss_pred ----------------------ceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 011978 393 ----------------------KFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 393 ----------------------~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~ 432 (473)
..+.++..|...|++++||. |.-.+|+-|.||.+.|=.+.
T Consensus 299 ~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 299 FEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12446778999999999987 45578899999999876554
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=154.39 Aligned_cols=303 Identities=17% Similarity=0.247 Sum_probs=195.7
Q ss_pred ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 141 ~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg 220 (473)
.|.+.+..|...|+|+.|..++ +|++|...|.+++|++++.+......-.|...|+.+.-.| ++.+.+-+.|+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p------~d~l~tqgRd~ 77 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP------NDSLDTQGRDP 77 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC------CcchhhcCCCc
Confidence 4567788999999999998776 4999999999999999987755433335666777665443 35788999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCC-eEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.+.+|++.....+.. |...+.++.|.+-. +...+... ..-.++-+.....+... ...-..+.+.++...
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~h~~D--~g~~tqv~i~dd~~~---- 147 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDETHKQD--GGDTTQVQIADDSER---- 147 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccce-eccCCCcchhheecCCcccchhhhhc--cCccceeEccCchhc----
Confidence 999999987554432 33444444443221 11111111 11111111100000000 000000111110000
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC---------CeeeecCcccceeEEEECC
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------PKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~v~~v~~sp 370 (473)
...+... ...........-.++.|-.+|.+.+||+..+.. .......|...|.++.|.+
T Consensus 148 -~Klgsvm-----------c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas 215 (323)
T KOG0322|consen 148 -SKLGSVM-----------CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS 215 (323)
T ss_pred -cccCcee-----------eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech
Confidence 0000000 000000111123577889999999999876421 1223456888999999998
Q ss_pred CCcEEEEEECCCcEEEEeCCC--CceE--EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC
Q 011978 371 DGQWVASASFDKSIKLWNGTT--GKFV--AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~--~~~~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~ 446 (473)
.-..=++|+.+..+..|++.. +.+. ....-.+..|..+...||++.+|+++.|+.||||+.++...+..++-|.+.
T Consensus 216 ~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag 295 (323)
T KOG0322|consen 216 SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG 295 (323)
T ss_pred hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc
Confidence 666667888888888998753 3221 122223456889999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 447 VFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 447 i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|++++|+||...+|.+|.|.+|-+|.
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeee
Confidence 99999999999999999999999996
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-20 Score=171.17 Aligned_cols=264 Identities=21% Similarity=0.373 Sum_probs=186.1
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
++..|.+.|..++|+|....|++|+.||++++|++.. .+++..+.+|.++|.|++..+++.++++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6678999999999999999999999999999999932 24678899999999999999999999999999999
Q ss_pred EEeeCC------CC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC--ccccE
Q 011978 175 QCWDPQ------TG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAV 243 (473)
Q Consensus 175 ~iwd~~------~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v 243 (473)
+.|++- +. ......+.||.+.+-.+.+++.. .++++|+.||++++|+...... .++.. ....-
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccc-----cceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 999543 11 12334678999999888887643 5799999999999999765443 11111 01111
Q ss_pred EEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 244 ~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
+++.+.... ..++...-+.--+++...+..+
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~----------------------------------------------- 475 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDL----------------------------------------------- 475 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhhe-----------------------------------------------
Confidence 222221111 0011111111111111111000
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h 401 (473)
.++..+.+... .....++.+..+|.+.+.+++..|+.|+++|..+++.+.....|
T Consensus 476 ---------~~~~s~~~~~~----------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 476 ---------LIFESSASPGP----------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred ---------eeccccCCCcc----------------cccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 01111111000 01124666788999999999999999999999999999999999
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~ 444 (473)
...++++++.|+|-+|++++.|+.+++|.+....+......|.
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999999987766655554443
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.9e-18 Score=139.44 Aligned_cols=278 Identities=18% Similarity=0.310 Sum_probs=194.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
.|.+-+++|.+++|+.|+.+|+|.+..++. +.++...++|+++|..|+|. ..+|++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 466678999999999999999999998753 23455668999999999998 357777765 99999987
Q ss_pred CCCccc-------cccCCCcC-----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978 180 QTGKPS-------GNPLSGHK-----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (473)
Q Consensus 180 ~~~~~~-------~~~~~~~~-----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (473)
+..... .....-|. -.|+++...|. .+-++.++.|+.+.-||+++++...+++||+..|.|+.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-----enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-----ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccC-----CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 643221 11112222 23455554442 34566777999999999999999999999999999998
Q ss_pred e-cCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978 248 W-GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (473)
Q Consensus 248 ~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
- +.++.+++|+.||++|+||.++++.+..+.....
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-------------------------------------------- 199 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-------------------------------------------- 199 (325)
T ss_pred ecccCcceeecCCCccEEEEeccccceeEEeccccC--------------------------------------------
Confidence 7 5677999999999999999999988765532110
Q ss_pred CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
+...-.....+|.+++.+ ..++++|+. ..+.+|++++.++..+|. -.+++.
T Consensus 200 -------------------------~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~ 250 (325)
T KOG0649|consen 200 -------------------------PNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVH 250 (325)
T ss_pred -------------------------hhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEe-ccccee
Confidence 000000112456666654 568888764 469999999998888776 345788
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCC-CEEEEEeCCCcEEec
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLW 471 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~~w 471 (473)
.+.|-.| .+++++..+.|.-|.+. +.+...++.....-+...|+..- ++|-.++-.+.+.++
T Consensus 251 ~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 251 LVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 8888644 56677777789989775 34444444444445666665332 445555666666654
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=6.7e-19 Score=146.66 Aligned_cols=249 Identities=20% Similarity=0.345 Sum_probs=169.3
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCC-------CcEEEEECCCCe---------EEEEec-CccccEEEEEecC
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRK---------CVICLS-GHTLAVTCVKWGG 250 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-------g~i~iwd~~~~~---------~~~~~~-~h~~~v~~~~~~~ 250 (473)
.+..|.+.|-.++-+|. +.+.|+++-.+ -.+.||.+.... ++..+. .+-+.|.|+.|.|
T Consensus 58 vf~h~agEvw~las~P~----d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPF----DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhcCCcceehhhcCCC----CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 34445555655555553 22345554331 246789876432 222232 3456899999999
Q ss_pred CCeEEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 251 DGVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
++.-+.+-.|..|.+|++..+.. +..+......- -...+..+.+.+ ...
T Consensus 134 ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e------~~~~ftsg~Wsp------------------------HHd 183 (370)
T KOG1007|consen 134 NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAE------MRHSFTSGAWSP------------------------HHD 183 (370)
T ss_pred CCCeeEEeccCceEEEEcccCcchheeeccccccc------ccceecccccCC------------------------CCc
Confidence 88644555599999999987755 22222111000 000111111111 111
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQ 407 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~ 407 (473)
...+....|+++..||.+...+....-..|...|+.+.|+|+-+ +|++++.||.|++||.+.. .++..+.+|..+|++
T Consensus 184 gnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 184 GNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred cceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 22344556899999999977776677778888999999999865 6889999999999999865 467889999999999
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEECCCCc-----------------------------eeecccccCCCEEEEEEeeCCC
Q 011978 408 ISWSA-DSRLLLSGSKDSTLKVWDIRTQK-----------------------------LKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 408 v~~sp-~g~~l~s~s~Dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
|.|+| ..+++.+||.|..|.+|.+.+-. .++++..|.+.|++++||.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 56789999999999999653210 1235667999999999997666
Q ss_pred E-EEEEeCCCcEEe
Q 011978 458 K-VASGGKDRVLKL 470 (473)
Q Consensus 458 ~-l~s~~~D~~i~~ 470 (473)
+ +||-+.||++.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 5 589999999876
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.4e-19 Score=158.09 Aligned_cols=260 Identities=17% Similarity=0.254 Sum_probs=194.7
Q ss_pred cEEEEEECCCCCe-EEEEeCCCeEEEEeCCCCc---eeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978 110 AVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQT---PMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 110 ~V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~---~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 184 (473)
.++++.|+..... +|+.++|..|++|.-.... +... ..+. .-.|++......++++|+..+.|+|||++ .+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-AKL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH-HHH
Confidence 3888888876643 3455689999999755442 2222 2222 33455544555899999999999999998 444
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-cccEEEEEecCCC--eEEEeecCC
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG--VIYTGSQDC 261 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~--~l~s~~~d~ 261 (473)
....+.+|...|+++.++- ...++++++..|.|.|..+.++.....+.-. ...|.-+.|++.. .|.+++.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~-----~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G 187 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNN-----TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG 187 (673)
T ss_pred HhhhccCCcceeEEEEecC-----CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC
Confidence 5567899999999998764 3468999999999999999887666555433 2345577787654 577899999
Q ss_pred eEEEEECCCCceeee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
.|.+||+.....+.. .+.|..+...++++|.. +..+++-+.|..
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----------------------------------e~l~vsVG~Dkk 232 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----------------------------------EALLVSVGYDKK 232 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcCcceecCCc-----------------------------------cceEEEecccce
Confidence 999999876555443 36677777777777652 336889999999
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCC
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g 414 (473)
|.+||....+........ .+...++|+++|.+|+.|...|.|..||++.. .++.++..|...|++|+|-|..
T Consensus 233 i~~yD~~s~~s~~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecccccccceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999998754433333333 35789999999999999999999999999854 5788888999999999998764
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=2.1e-18 Score=150.25 Aligned_cols=296 Identities=18% Similarity=0.349 Sum_probs=190.6
Q ss_pred CCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCcccc--------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978 150 KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSG--------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 150 ~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg 220 (473)
..+|.++.|.+++. .|++|+.|..|++|.+..+.... ..+..|...|+.+.|+| .++.+++|+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-----~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-----DGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-----CcCeeeecCCCc
Confidence 35788999998776 99999999999999876543221 24678999999999987 567899999999
Q ss_pred cEEEEECC--------C--------CeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCce
Q 011978 221 DARIWDVS--------L--------RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283 (473)
Q Consensus 221 ~i~iwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 283 (473)
.+.+|... + ......+.+|...|..++|.+++ .+++++.|..+++||+..|+....+..|.+.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 99999765 2 12345667899999999999988 5889999999999999999999999999999
Q ss_pred EEEEEecccceee-eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe----cCCceEEEEeCCCCCCCeeeecC
Q 011978 284 VNSLALSTEYALR-TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTG 358 (473)
Q Consensus 284 v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~ 358 (473)
+..+++.|..... .-..+.....+... +.+. +....-..+.+. ......+++--..
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~-------~~~~--~~~~~~~~m~~~~~~~~e~~s~rLfhDeT---------- 228 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAK-------LKQV--IKRHGLDIMPAKAFNEREGKSTRLFHDET---------- 228 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeee-------eeee--eeeeeeeEeeecccCCCCcceeeeeecCc----------
Confidence 9999887643221 11111100000000 0000 000000000000 0001111111000
Q ss_pred cccceeEEEECCCCcEEEEEEC----CC-----cEEEEeCCC-CceEEEeeCCccCEEEEEEec----------------
Q 011978 359 HQQLVNHVYFSPDGQWVASASF----DK-----SIKLWNGTT-GKFVAVFRGHVGPVYQISWSA---------------- 412 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs~----d~-----~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp---------------- 412 (473)
-..-...++|+|+|.++++.+. ++ +.++|+-.. .++...+.+-.-++..+.|+|
T Consensus 229 lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~ 308 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV 308 (434)
T ss_pred hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence 0122456789999999998642 22 234444321 122333333334455555553
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCceeeccc-ccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 413 --DSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 413 --~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
-+-.+|.++. +.|++||..+...+.... -|-..|+.++|++||..|+..|.||.+-+
T Consensus 309 lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 309 LPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2334555554 569999998866654433 37789999999999999999999997643
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.4e-19 Score=150.97 Aligned_cols=257 Identities=20% Similarity=0.294 Sum_probs=185.8
Q ss_pred CCcccEEEEEECCCC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCC
Q 011978 106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 106 gh~~~V~~~~~sp~~----~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~ 180 (473)
.|...-..++|+.|. .++|.|+.-|.|||.|+.+++....+.+|...|..+.|.|+. +++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477778889998653 478888999999999999999888899999999999999975 578899999999999999
Q ss_pred CCcccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE------E-------------------
Q 011978 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC------V------------------- 233 (473)
Q Consensus 181 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~------~------------------- 233 (473)
+..++... ..+|...|-++.|++ ++.++++|+.|.++++|++...+. .
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 98765432 578999999999876 567999999999999999873210 0
Q ss_pred E---EecCccccEEEEEecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978 234 I---CLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (473)
Q Consensus 234 ~---~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
. +..-|...|.|+.|-.+ ++++=+-++.|..|...+ ++.+...+..+.
T Consensus 242 p~fst~diHrnyVDCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es--------------------------- 293 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPES--------------------------- 293 (385)
T ss_pred ccccccccccchHHHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCcc---------------------------
Confidence 0 11246677778877753 677777788888886421 111111100000
Q ss_pred HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
... .+.-++.. .-.-+....+|.|-+++||.|...|.|.+||+
T Consensus 294 -------------------~~T--------i~~~~~~~----------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 294 -------------------ATT--------ILGEFDYP----------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred -------------------cee--------eeeEeccC----------ccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 000 00001110 00112334567788999999999999999999
Q ss_pred CCCceE--EEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 390 TTGKFV--AVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 390 ~~~~~~--~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
+..++. .++. .....|...+||-||..|+...+|++|.-||..
T Consensus 337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 876542 1221 123579999999999999999999999999853
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=8.8e-19 Score=157.64 Aligned_cols=266 Identities=17% Similarity=0.279 Sum_probs=178.4
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEe-eCCCCccccccCCCcCCcEEEEEe-ce--eccCCCCceEEEeeCCCcEE
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSGHKKWITGISW-EP--VHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~~i~~-~~--~~~~~~~~~~~s~s~dg~i~ 223 (473)
.|..-|.|+.|+.+...+.+ +.|..+.+| |+.+..... ..--...+....+ -+ ..-......|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~--~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEV--AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEe-ccCceEEEeecccchhhhh--hhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 45556778999887655554 455555554 544332111 1001111111100 00 00112235799999999999
Q ss_pred EEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
+.+- .++.......|.+++.|-.|++||. |++++.||.|++|. ++|-+..++...+..|.|+++.|+.
T Consensus 89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S--------- 157 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNS--------- 157 (737)
T ss_pred Eecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCC---------
Confidence 8863 3444455678999999999999995 99999999999997 4555555566677789999887752
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
...+.+.+ +.+.+=.+. ......+-..|.+.|.++.|+|...++++|+.|-
T Consensus 158 --------------------------~~vl~c~g--~h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 158 --------------------------NSIVFCQG--GHISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred --------------------------CceEEecC--CeEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCce
Confidence 11223322 222222211 1223345568999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
..++||.. |..+..-..|.-+|++++|+|+ ..++.+|.. +.+ . . +...+.|+.++||+||..+++|
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------~-~--~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------F-S--SPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred eEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee--------e-c--CCCccceEEEEEcCCCceeecc
Confidence 99999965 6667777789999999999999 666666542 333 1 1 1234689999999999999999
Q ss_pred eCCCcEEe
Q 011978 463 GKDRVLKL 470 (473)
Q Consensus 463 ~~D~~i~~ 470 (473)
...|.+.+
T Consensus 275 t~~G~v~~ 282 (737)
T KOG1524|consen 275 TSTGQLIV 282 (737)
T ss_pred ccCceEEE
Confidence 99987754
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.9e-19 Score=158.20 Aligned_cols=291 Identities=21% Similarity=0.328 Sum_probs=219.1
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~ 223 (473)
.++..|.+.|..|.|+..|..|++|+.|..|.+||+..++.......+|...|..-.|.|.. +...+++++.||.++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcCceeccccCcee
Confidence 35678999999999999999999999999999999999888777889999999888888743 567899999999999
Q ss_pred EEECCCCe-E--EEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeee---eccCc---eEEEEEeccc
Q 011978 224 IWDVSLRK-C--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL---KGHGH---WVNSLALSTE 292 (473)
Q Consensus 224 iwd~~~~~-~--~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~---~v~~~~~~~~ 292 (473)
+=.+.... + ...+..|.+.|..++..|+. .+++++.|+.+.-+|++++.....+ +.+.. ...+++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87764322 2 34556788899999988765 5899999999999999877543322 11111 2233333332
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-----------CeeeecCccc
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTRMTGHQQ 361 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~ 361 (473)
.+..+++++.|-.+++||.+.-.. +........-
T Consensus 293 -----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 293 -----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred -----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 233567777777777777542211 1111112334
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCC--C----------ceE-EEeeCCcc--CEEEEEE-ecCCCEEEEEeCCCc
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFV-AVFRGHVG--PVYQISW-SADSRLLLSGSKDST 425 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~--~----------~~~-~~~~~h~~--~v~~v~~-sp~g~~l~s~s~Dg~ 425 (473)
.|++++|+.++.-|.+.-.|-.|+++...- | ..+ ..|+||.. .|-.|-| -|...|+++||.-|.
T Consensus 338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh 417 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH 417 (559)
T ss_pred cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce
Confidence 699999998776666667777899995332 2 122 24889965 4667765 578899999999999
Q ss_pred EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.||+-.+++.+.-+.+-..-|+||.=+|--..|||.|-|.-||||.
T Consensus 418 IFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 418 IFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred EEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 99999999999988888777899999999999999999999999995
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.4e-18 Score=143.08 Aligned_cols=208 Identities=26% Similarity=0.517 Sum_probs=154.8
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----CeEEEEecCccccEEEEEecCC--C-eEEEeecC
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTCVKWGGD--G-VIYTGSQD 260 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d 260 (473)
...+|.+.|.++.|.+ .++++++|+.|++++|||.+. -.+....+.|.+.|..+.|.+. | .+++++.|
T Consensus 8 i~s~h~DlihdVs~D~-----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDF-----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cccCCcceeeeeeecc-----cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 3467888899998876 568999999999999999643 3566677889999999999753 3 58899999
Q ss_pred CeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 261 CTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
++++||.-. ...++.|+ .++.
T Consensus 83 rtv~iWEE~----~~~~~~~~~~Wv~------------------------------------------------------ 104 (361)
T KOG2445|consen 83 RTVSIWEEQ----EKSEEAHGRRWVR------------------------------------------------------ 104 (361)
T ss_pred Cceeeeeec----ccccccccceeEE------------------------------------------------------
Confidence 999999732 11222222 1221
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCc------eEEEee-------CCccC
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGK------FVAVFR-------GHVGP 404 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~------~~~~~~-------~h~~~ 404 (473)
...+......|+.|.|.| -|-.||+++.||.+|||+..... +...++ .+..+
T Consensus 105 -------------~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 105 -------------RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred -------------EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 122333445789999999 47899999999999999865432 222232 45668
Q ss_pred EEEEEEecC---CCEEEEEeCC-----CcEEEEECCCC----ceeecccccCCCEEEEEEeeCC----CEEEEEeCCCcE
Q 011978 405 VYQISWSAD---SRLLLSGSKD-----STLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDG----EKVASGGKDRVL 468 (473)
Q Consensus 405 v~~v~~sp~---g~~l~s~s~D-----g~i~iwd~~~~----~~~~~~~~h~~~i~~l~~s~d~----~~l~s~~~D~~i 468 (473)
..||.|+|. ..+||.|+.+ +.++||..... ....++.+|.++|++++|.|.- ..||+++.|| |
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 899999984 4578888876 47899976542 3456888999999999999973 4789999999 9
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
+||+
T Consensus 251 ~I~~ 254 (361)
T KOG2445|consen 251 RIFK 254 (361)
T ss_pred EEEE
Confidence 9986
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=152.41 Aligned_cols=247 Identities=14% Similarity=0.246 Sum_probs=181.4
Q ss_pred CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCcee--EEEcCCC-CCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~--~~~~~~~-~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
--.-+|.++.|.|+|. .+++++.....+.||+.+.+.. ....+++ ..+.....|+++++|+..+..|.|.+.-..+
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 3456899999999999 8899999999999999876532 2223443 4567788999999999999999999998888
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-cEEEEEecCCC-eEEEeec
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-AVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~~~~-~l~s~~~ 259 (473)
++.+... .-.+.|..+.|.. ++..++.++.+|.|.+||++...|+..+..... .-++++.+.++ ++++|+.
T Consensus 335 ~eli~s~--KieG~v~~~~fsS-----dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 335 KELITSF--KIEGVVSDFTFSS-----DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred hhhhhee--eeccEEeeEEEec-----CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 7654321 2245677777763 567899999999999999999988877653211 22344545555 6788888
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
.|.|.|||..+-..
T Consensus 408 ~GiVNIYd~~s~~~------------------------------------------------------------------ 421 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFA------------------------------------------------------------------ 421 (514)
T ss_pred cceEEEeccchhhc------------------------------------------------------------------
Confidence 88888888543100
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCC
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADS 414 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g 414 (473)
....+|...+..-...|++++|+||++.||.+|. +..+|+-.+.+......+.. .-+.|+|++|||.|
T Consensus 422 -------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 422 -------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred -------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 0001122222233346899999999999998875 56899988877665555443 34579999999999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 011978 415 RLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~ 432 (473)
.+||.|..+|.+.+|.+.
T Consensus 495 G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEeecCCCceeeEeec
Confidence 999999999999999764
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.1e-17 Score=161.99 Aligned_cols=287 Identities=21% Similarity=0.332 Sum_probs=198.2
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC---CCCEEEEEECC--CCCeEEEEecCCeEEEeeCC
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~ 180 (473)
+...+-..+.|+|-...++++.+.-.|+|||++.++.+..+..+ ...|+.|.+-. |...+++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445567889999999999988889999999988776555432 35688888754 55689999999999999743
Q ss_pred CC--cccc-----ccCCCcC----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEe
Q 011978 181 TG--KPSG-----NPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKW 248 (473)
Q Consensus 181 ~~--~~~~-----~~~~~~~----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~ 248 (473)
.. +... ..+.++. +.---+.|.. .+..++++|.-+.|+|||.....+...+. +-...|++++-
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 21 1100 0111111 1001123433 23567777778999999999887776654 33445666654
Q ss_pred cC--CCeEEEeecCCeEEEEECCCCc---eeeeeeccCce--EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 249 GG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 249 ~~--~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
+. .+.+++|-.||.+++||.+... .+...+.|..+ |..+.+.+.
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~----------------------------- 1267 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ----------------------------- 1267 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-----------------------------
Confidence 42 2478899999999999987543 34445555554 555544332
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCC-CCCeeeecCcc--c-ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~--~-~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~ 397 (473)
.-..+++|+.||.|++||++.. .........|. + ..+++..|++...+|+|+. +.|+||++. |+.+..
T Consensus 1268 ------G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 ------GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred ------CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence 1225999999999999999874 22222222232 2 4899999999999999998 899999975 444444
Q ss_pred eeC-------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 398 FRG-------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 398 ~~~-------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
++. ..+.+.|++|+|..-+||+|+.|.+|.||.....
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 432 2356899999999999999999999999977543
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1.8e-17 Score=157.60 Aligned_cols=269 Identities=18% Similarity=0.281 Sum_probs=184.4
Q ss_pred CCeEEEEeCCCC-ceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCcc-----ccccCCCcCCcEEEEEe
Q 011978 129 DTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISW 201 (473)
Q Consensus 129 d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~i~~ 201 (473)
++.+.||++... .+...+. -...|.|+.|+|. ..+++.|..+|+|.+||++.+.. +......|...+..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 347999999766 3333332 4567999999995 56777888999999999987654 12234678899999999
Q ss_pred ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE------ec------CccccEEEEEecCCC--eEEEeecCCeEEEEE
Q 011978 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LS------GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE 267 (473)
Q Consensus 202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~------~~------~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd 267 (473)
..... ...|++++.||.|+.|+++.-..... .. .....+++++|.+.. .++.|+.+|.|.--.
T Consensus 300 ~~~~~---~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 300 LQNEH---NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred eccCC---CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence 87432 25799999999999998765432110 00 112345666665432 456666666654321
Q ss_pred CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
....+.-. .
T Consensus 377 r~g~~~~~-----------------------------------------------------------------------~ 385 (555)
T KOG1587|consen 377 RKGYTPAP-----------------------------------------------------------------------E 385 (555)
T ss_pred ccCCcccc-----------------------------------------------------------------------c
Confidence 11000000 0
Q ss_pred CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCc
Q 011978 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQISWSADS-RLLLSGSKDST 425 (473)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~ 425 (473)
...........|.+.|.++.++|-+..+...+.|-+++||... ...++..+..+...|++++|||.. ..++++..||.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 0001223445677889999999977655555559999999977 666777777788889999999965 57888899999
Q ss_pred EEEEECCCC--ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQ--KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.+||+... ....+..-+....+.+.|++.|+.|+.|+..|++.+|.
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 999999653 23333333455667788999999999999999999875
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.3e-18 Score=156.15 Aligned_cols=252 Identities=22% Similarity=0.326 Sum_probs=176.8
Q ss_pred EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE
Q 011978 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i 224 (473)
.+..|.+.|..++|.|-...|++++.||+|.+|+++.... +.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-------s~------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-------SA------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-------cc-------------------------------
Confidence 4556777777788877777788888888888887743110 00
Q ss_pred EECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC----------ceeeeeeccCceEEEEEecccc
Q 011978 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----------KLIRELKGHGHWVNSLALSTEY 293 (473)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~ 293 (473)
....+.++++.+|.++|.|+.+..++ .+++|+.||+|+.|++... .....+.+|...++.++++..
T Consensus 331 --~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~- 407 (577)
T KOG0642|consen 331 --EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST- 407 (577)
T ss_pred --ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-
Confidence 01234566788999999999999887 5999999999999965421 123456778888887776643
Q ss_pred eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-
Q 011978 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG- 372 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g- 372 (473)
.++|++++.||++++|++..................++++-...
T Consensus 408 -----------------------------------~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 408 -----------------------------------KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred -----------------------------------ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence 45799999999999999754433111111112334455554322
Q ss_pred cEEEEEECCCcEEEEeCCCCceEEEeeCC-------ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC
Q 011978 373 QWVASASFDKSIKLWNGTTGKFVAVFRGH-------VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 445 (473)
Q Consensus 373 ~~lasgs~d~~v~lwd~~~~~~~~~~~~h-------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~ 445 (473)
...++...-+.-.+++...+..+..+... ...++.+.++|.+.+.+++-.|+.|+++|..+++.+.....|..
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc
Confidence 11222112222233344444444444321 23577889999999999999999999999999999999999999
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 446 EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.++++++.|+|-+|++++.|+.+++|.
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhh
Confidence 999999999999999999999999995
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.1e-18 Score=144.25 Aligned_cols=269 Identities=14% Similarity=0.225 Sum_probs=182.3
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeCCCCcccccc-CCCcC-CcE
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNP-LSGHK-KWI 196 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-~~v 196 (473)
..+|++...|+|++||..++..+..++++...+..+.|.. ....+.+|+.||+|++||++........ ...+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4578888999999999999988889999999999999976 3567889999999999999875543322 23333 233
Q ss_pred EEEEeceeccCCCCceEEEee----CCCcEEEEECCCCeE-EEE-ecCccccEEEEEecCCC--eEEEeecCCeEEEEEC
Q 011978 197 TGISWEPVHLNAPCRRFVSAS----KDGDARIWDVSLRKC-VIC-LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET 268 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s----~dg~i~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~ 268 (473)
.+++- +...+.+++|+ .+-.+.+||++..+. +.. ...|...|+++.|.|.. +|++|+.||-+.+||+
T Consensus 121 ~~ld~-----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDL-----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeec-----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 33332 11223455443 356799999998776 333 45799999999999864 7999999999999997
Q ss_pred CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 348 (473)
.....-
T Consensus 196 ~~d~Ee-------------------------------------------------------------------------- 201 (376)
T KOG1188|consen 196 KKDNEE-------------------------------------------------------------------------- 201 (376)
T ss_pred CCCcch--------------------------------------------------------------------------
Confidence 643100
Q ss_pred CCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCc------------c-CEEEEEEec-C
Q 011978 349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHV------------G-PVYQISWSA-D 413 (473)
Q Consensus 349 ~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------------~-~v~~v~~sp-~ 413 (473)
........|...|.++.|..++ +.|.+-+.+.+..+|+++.+.+...+.... . -|.+ .+| +
T Consensus 202 --DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~ 277 (376)
T KOG1188|consen 202 --DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGD 277 (376)
T ss_pred --hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCC
Confidence 0000111233457778887665 458888889999999998877544332210 0 1111 123 3
Q ss_pred CCEEEEEeC-CCcEEEEECC---CC---ceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 414 SRLLLSGSK-DSTLKVWDIR---TQ---KLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 414 g~~l~s~s~-Dg~i~iwd~~---~~---~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...++.++. -|...++-+. ++ +....+.| |..-|.++.|...+..+.|||+||.+.+|.
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 445555544 4555555433 22 33445566 555667788888889999999999999996
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=2.5e-16 Score=146.41 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=164.5
Q ss_pred EEEeCCCeEEEEeCCC-Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCC-CCccccccCCCcCCcEEE
Q 011978 124 ASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ-TGKPSGNPLSGHKKWITG 198 (473)
Q Consensus 124 at~s~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~ 198 (473)
++...|+.|++||+.+ ++ .+..+. +......++++|++++|++++ .++.|.+|+++ +++...............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 32 223332 335577899999999987765 47889999986 333211000011123345
Q ss_pred EEeceeccCCCCceEEEee-CCCcEEEEECCCC----eEEEEecCccccEEEEEecCCC-eE-EEeecCCeEEEEECCCC
Q 011978 199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQG 271 (473)
Q Consensus 199 i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~l-~s~~~d~~i~~wd~~~~ 271 (473)
+.+.| +++++++++ .++.+.+||+... +.+..+.+ .....++.+++++ .+ ++...++.|.+||+.+.
T Consensus 85 i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 85 ISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 55554 455566554 4889999998642 22222222 2345667788887 44 45556789999998652
Q ss_pred ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
..+...... .
T Consensus 159 g~l~~~~~~---------------------------------------------------~------------------- 168 (330)
T PRK11028 159 GHLVAQEPA---------------------------------------------------E------------------- 168 (330)
T ss_pred CcccccCCC---------------------------------------------------c-------------------
Confidence 211100000 0
Q ss_pred CeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCC--Cc--eEEEeeCC------ccCEEEEEEecCCCEEEEE
Q 011978 352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GK--FVAVFRGH------VGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 352 ~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~--~~--~~~~~~~h------~~~v~~v~~sp~g~~l~s~ 420 (473)
..... ......++|+|+|++++++.. +++|.+||+.. ++ .+..+..+ ......+.++|+|++|+++
T Consensus 169 -~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 169 -VTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred -eecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 00000 012456899999999988876 89999999873 33 23333221 1223468899999999888
Q ss_pred e-CCCcEEEEECCCCc----eeecccccCCCEEEEEEeeCCCEEEEEeC-CCcEEecc
Q 011978 421 S-KDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPDGEKVASGGK-DRVLKLWM 472 (473)
Q Consensus 421 s-~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~~w~ 472 (473)
. .++.|.+|++.... ........ .....+.++|||++|+++.. +++|.+|.
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 5 47899999986432 12222211 13457899999999987775 88999984
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=3.1e-17 Score=151.51 Aligned_cols=271 Identities=18% Similarity=0.300 Sum_probs=197.4
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
.|..++|-|||..|+.+. +..+.+||.+.|... +++.+|++.|++++|+. ++.+|++|+.|..|.+|.-...-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll-qtLKgHKDtVycVAys~-----dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL-QPLKGHKDTVYCVAYAK-----DGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc-cccccccceEEEEEEcc-----CCceeccCCCceeEEEecccccc
Confidence 688999999999888765 468999999998755 57899999999999976 67899999999999999865432
Q ss_pred EEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 232 CVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
.+. ..|...|.|+.|+|-.. +++++ =...-+|...+....+. .....+.+.++..+
T Consensus 87 ~Lk--YSH~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V~K~--kss~R~~~CsWtnD------------------ 143 (1081)
T KOG1538|consen 87 ILK--YSHNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSVSKH--KSSSRIICCSWTND------------------ 143 (1081)
T ss_pred eee--eccCCeeeEeecCchHHHhhhcc-hhhccccChhhhhHHhh--hhheeEEEeeecCC------------------
Confidence 222 36899999999998654 55554 33455676543222111 11223444444333
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCCC-----cEEEEEECCCcE
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDG-----QWVASASFDKSI 384 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~g-----~~lasgs~d~~v 384 (473)
...++-|-.+|+|.+-+-..... ...+..|....|.+++|+|.. ..++......++
T Consensus 144 ------------------GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 144 ------------------GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred ------------------CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 34578888899998875332222 223445667889999999963 467777777788
Q ss_pred EEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 385 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
.++.+. |+.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|. +.|-.+.++......|+.+...|++++++.|+.
T Consensus 206 SFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 206 SFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred EEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 887764 454443332233456789999999999999999999994 456666777666778999999999999999999
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
||+|..|+
T Consensus 284 DGTiACyN 291 (1081)
T KOG1538|consen 284 DGTIACYN 291 (1081)
T ss_pred cCeeehhh
Confidence 99998764
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.9e-17 Score=139.13 Aligned_cols=270 Identities=20% Similarity=0.334 Sum_probs=197.5
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEeCCCC-------cee-----EEEc-CCCCCEEEEEEC-------CCCCeEEEEecC
Q 011978 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQ-------TPM-----FKCT-GHKNWVLCIAWS-------ADGKHLVSGSKA 171 (473)
Q Consensus 112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~-------~~~-----~~~~-~~~~~v~~l~~s-------~dg~~l~s~~~d 171 (473)
..+.|+|||..|.+-+.|..+++|++... .++ ..+. .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 35789999999999999999999997421 110 0111 113446666663 677889999999
Q ss_pred CeEEEeeCCCCcccccc-CCCcCCcEE---EEEeceeccCCCCceEEEeeCCCcEEEEEC-CCCeEE--EE-----ecCc
Q 011978 172 GELQCWDPQTGKPSGNP-LSGHKKWIT---GISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKCV--IC-----LSGH 239 (473)
Q Consensus 172 g~i~iwd~~~~~~~~~~-~~~~~~~v~---~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~-~~~~~~--~~-----~~~h 239 (473)
.-|++||.-+|+..... .-.|...++ ++.|+ +++.++. ++..+.|+++|+ +.+..- .. -.+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-----~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-----PDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEec-----CCCCeEe-ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999998753211 112333333 34444 4666654 567799999998 444211 11 1245
Q ss_pred cccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (473)
Q Consensus 240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.+.+.|++|+|-. .++.|+...++-||.-..+..+..+-+|+.-|..+.+.++.
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG------------------------ 262 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG------------------------ 262 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc------------------------
Confidence 6788999999853 68889998999998888888888889999999999887752
Q ss_pred HhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCeeeecCccc-ceeE--EEECCCCcEEEEEECCCcEEEEeCCC-C
Q 011978 318 LERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQ-LVNH--VYFSPDGQWVASASFDKSIKLWNGTT-G 392 (473)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~--v~~sp~g~~lasgs~d~~v~lwd~~~-~ 392 (473)
+++++|+ .|-.|..||++....+.-.+..|.. .-.. ....|++++||+|+.||.|++||++. |
T Consensus 263 ------------n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 263 ------------NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ------------CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 2455544 4778999999988877766666654 2222 45568999999999999999999998 7
Q ss_pred ceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978 393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
..+..+..|...++.|+++|--.++|++|..
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CcccccccccccccceecCcccceeeeccCc
Confidence 7788888899999999999998888887653
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=8.1e-18 Score=147.64 Aligned_cols=201 Identities=22% Similarity=0.360 Sum_probs=141.3
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCC
Q 011978 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191 (473)
Q Consensus 112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 191 (473)
.+++|+.+|..|++++.||++|||++..-..+.....|...|.+|.|+|||+.|++-+.| ..++|+.++|.........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999988777666777899999999999999999999999 9999999988432211100
Q ss_pred cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-----eEEEe-ecCCeEEE
Q 011978 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----VIYTG-SQDCTIKV 265 (473)
Q Consensus 192 ~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~s~-~~d~~i~~ 265 (473)
... .. ...+.|..++ ++++. ..-+.|+.
T Consensus 227 ~k~----------------~~------------------------------~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 227 SKD----------------EM------------------------------FSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred ccc----------------hh------------------------------hhhceecccCCCceEEEEEecCCCCceeE
Confidence 000 00 0111222111 11111 12233333
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
||+. +|+
T Consensus 261 ~~~~-------------------------------------------------------------------------~w~ 267 (398)
T KOG0771|consen 261 CDIS-------------------------------------------------------------------------LWS 267 (398)
T ss_pred EEee-------------------------------------------------------------------------eec
Confidence 3321 111
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLLLSGSKDS 424 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg 424 (473)
-. ......+.......|++++++++|+++|.|+.||.|-+++..+.+.++.. +.|...|+.|.|+||.+++++.|.|.
T Consensus 268 ~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 268 GS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 10 00000111112246899999999999999999999999999988877655 57999999999999999999999999
Q ss_pred cEEEEECCC
Q 011978 425 TLKVWDIRT 433 (473)
Q Consensus 425 ~i~iwd~~~ 433 (473)
+..+..+..
T Consensus 347 ~~~v~~l~v 355 (398)
T KOG0771|consen 347 EAAVTKLAV 355 (398)
T ss_pred ceeEEEEee
Confidence 998887654
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=152.10 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=211.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECCC--CCeEEEEecCCeEEEe
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW 177 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iw 177 (473)
...|.+|.+.|+.+.|...|..|++||.|..|.+||+..+.+...+ .+|...|..-.|-|. .+.|++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3457889999999999999999999999999999999988877665 488888887778773 5679999999999887
Q ss_pred eCCC-Cccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE---EecCccc---cEEEEEec
Q 011978 178 DPQT-GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTL---AVTCVKWG 249 (473)
Q Consensus 178 d~~~-~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~---~~~~h~~---~v~~~~~~ 249 (473)
.+.. +... ...+..|.+.|..++..|... ..|.+++.|+.+.-.|++.+.... +-..+.. ....++.+
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 6543 3222 234677889999988877543 479999999999999998764322 2222322 45567777
Q ss_pred CCC--eEEEeecCCeEEEEECCCCcee------eeeec------cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 250 GDG--VIYTGSQDCTIKVWETTQGKLI------RELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 250 ~~~--~l~s~~~d~~i~~wd~~~~~~~------~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
|.. .+++|+.|-.+++||.+.-..- ..+.. ....|.+++++-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh------------------------ 346 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH------------------------ 346 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC------------------------
Confidence 644 6889999999999997643211 11110 011122222221
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-----------Ceee-ecCccc--ceeEEE-ECCCCcEEEEEEC
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PKTR-MTGHQQ--LVNHVY-FSPDGQWVASASF 380 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~-~~~~~~--~v~~v~-~sp~g~~lasgs~ 380 (473)
.+..++++-.|-.|+++....+.. .... ..||.. .|..+- |-|...|+++||.
T Consensus 347 ------------~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 347 ------------DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred ------------CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 122344555566677775322111 1112 456653 355554 5689999999999
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.|.|.||+-.+++.+..+++....|+|+.=+|.-..||+.+.|..||||-..+
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99999999999999998888777999999999999999999999999997643
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-17 Score=142.98 Aligned_cols=271 Identities=17% Similarity=0.267 Sum_probs=184.2
Q ss_pred eeEEEeecc--cccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCcee--EEEcCCC-CCEEEEEECCCC
Q 011978 90 AVFRIRPVN--RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADG 162 (473)
Q Consensus 90 ~~~~~~~~~--~~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~~~--~~~~~~~-~~v~~l~~s~dg 162 (473)
..+++.... +....+.+|...++.++|.. .+..+.+|+.||+||+||++..... .....+. .+..|++-+-.+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 344554443 36677899999999999987 4667899999999999999876543 3445555 577888887777
Q ss_pred CeEEEEe----cCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEE
Q 011978 163 KHLVSGS----KAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVI 234 (473)
Q Consensus 163 ~~l~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~ 234 (473)
+.+++|. .+-.+.+||++..+. +......|...|+.+.|+|..+ +.+++||.||-+.++|+.... .+.
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----nlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----NLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----CeEEeecccceEEeeecCCCcchhhHH
Confidence 7777775 356799999988766 6667789999999999999654 589999999999999987542 122
Q ss_pred EecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 235 CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 235 ~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
....|...|.++.|.+++ .|.+-+...+..+|+++.+.....+.... +.. ...
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~--~~~-----------------------~d~ 260 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD--VSA-----------------------DDL 260 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc--chh-----------------------hhH
Confidence 223466779999999988 79999999999999998876443332110 000 000
Q ss_pred HHHHH-HhhhhcccCCCCceEE-EecCCceEEEEeCC-----CCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcE
Q 011978 313 MKKAA-LERYNKIKGNAPERLV-SGSDDFTMFLWEPA-----VSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSI 384 (473)
Q Consensus 313 ~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~-----~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v 384 (473)
.+... ....+.......+.++ .++.-+...++-.. ........+.+ |...|+++.|...+.++.||+.||.+
T Consensus 261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceE
Confidence 00000 0111111111122233 33324444443321 11223344444 78889999999999999999999999
Q ss_pred EEEeC
Q 011978 385 KLWNG 389 (473)
Q Consensus 385 ~lwd~ 389 (473)
.+|..
T Consensus 341 ~~Wk~ 345 (376)
T KOG1188|consen 341 QAWKV 345 (376)
T ss_pred EEEec
Confidence 99974
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.8e-16 Score=132.38 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=194.2
Q ss_pred CCEEEEEECC--C-CCeEEEEec----CCeEEEeeC--CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 151 NWVLCIAWSA--D-GKHLVSGSK----AGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 151 ~~v~~l~~s~--d-g~~l~s~~~----dg~i~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
-.+.++.|+. + +.+|+.|+. .++|.|-.+ .+++........|.-+++.+-|.|.........++|++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3467778872 2 346777774 466766554 34444444446788899999999976544445565544 57
Q ss_pred EEEEECCCCeEE----EE-----ecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCce---eeeeeccCceEEEE
Q 011978 222 ARIWDVSLRKCV----IC-----LSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKL---IRELKGHGHWVNSL 287 (473)
Q Consensus 222 i~iwd~~~~~~~----~~-----~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~ 287 (473)
+|+|.+...... .. -..+..++++..|+.- .++.+++-|-+..+||++++.. -.++-.|...|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999988732111 11 1245678888888742 4788999999999999998733 45678899999998
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc--ccceeE
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH--QQLVNH 365 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~ 365 (473)
++... ..+.+++.+.||.++++|++............ ......
T Consensus 203 af~~~-----------------------------------s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 203 AFLKG-----------------------------------SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR 247 (364)
T ss_pred EeccC-----------------------------------ccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence 87642 23468999999999999987554332222211 345667
Q ss_pred EEECC-CCcEEEEEECC-CcEEEEeCCCC-ceEEEeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-----
Q 011978 366 VYFSP-DGQWVASASFD-KSIKLWNGTTG-KFVAVFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRTQKL----- 436 (473)
Q Consensus 366 v~~sp-~g~~lasgs~d-~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~~~~----- 436 (473)
++|++ |-+++|+-..| ..|.+-|++.. ..+..+++|.+.|++++|.|. ..+|+++++|..+.|||+..--.
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 88887 56788876655 46899999875 467889999999999999996 46899999999999999975211
Q ss_pred -eecccccCCCEEEEEEee-CCCEEEEEeCC
Q 011978 437 -KQDLPGHADEVFAVDWSP-DGEKVASGGKD 465 (473)
Q Consensus 437 -~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D 465 (473)
+-.+. -..+|+.+.|++ .+.+++.+...
T Consensus 328 Pilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred chhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 11122 346899999994 45677776553
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.4e-16 Score=150.45 Aligned_cols=273 Identities=19% Similarity=0.242 Sum_probs=176.1
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC---eEEEEecCCeEEEeeCCCCccccccCC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK---HLVSGSKAGELQCWDPQTGKPSGNPLS 190 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~---~l~s~~~dg~i~iwd~~~~~~~~~~~~ 190 (473)
-.||+|+++++... +.+|.||...|+.++..+.+|..++.++.+.|... ++++++.+|.|++||...+........
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 46899999887764 46999999999999999999999999999988543 677999999999999988875543211
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEeeC-CC-cEEEEECCCCeEE-----EEe--------cCccccEEEEEecCCCeEE
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSASK-DG-DARIWDVSLRKCV-----ICL--------SGHTLAVTCVKWGGDGVIY 255 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg-~i~iwd~~~~~~~-----~~~--------~~h~~~v~~~~~~~~~~l~ 255 (473)
...+..+.+.|.....+ .++..+. |. .+........+.. .+. .+|.. -.++.+++.+.+.
T Consensus 101 --~~~v~~~~~~~~~a~~s--~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 101 --NLPVHALVYKPAQADIS--ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK 175 (792)
T ss_pred --CCceeEEEechhHhCcc--ceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence 12233333333222111 1111111 00 0000000000000 000 00000 1112222222222
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
....
T Consensus 176 ~i~~---------------------------------------------------------------------------- 179 (792)
T KOG1963|consen 176 GIVH---------------------------------------------------------------------------- 179 (792)
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2222
Q ss_pred cCCceEEEEeCCCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC--C--ceEEEeeCCccCEEEE
Q 011978 336 SDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--G--KFVAVFRGHVGPVYQI 408 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~--~--~~~~~~~~h~~~v~~v 408 (473)
+..+++|...... ........|...+++.++||+++++|+|..||.|.+|.--. + .....+.=|...|+++
T Consensus 180 --~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 180 --MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred --eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 2233444332211 01111234555689999999999999999999999996432 2 1234566688999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+|++||.+|.+|+.++.+.+|.+.+++ .+-++--.+.|..+.+|||+...+....|+.|.+-
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred EEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 999999999999999999999999987 55666677899999999999999999999998764
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.1e-16 Score=148.28 Aligned_cols=291 Identities=22% Similarity=0.278 Sum_probs=199.9
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
-|+-.++|.++||+++++|+|..||.|.+|.--. .. ....+.-|.+.|.+++|++||.+|++|+..|.+.+|...+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999995322 11 1223446888999999999999999999999999999999
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-----------ccccEEEEEecC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-----------HTLAVTCVKWGG 250 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~~~ 250 (473)
++ .+.++.-...|..+.++| ++........|..|.+-...+.....++.| ...-.+.++++|
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred CC--cccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 87 356777778899998886 556778888899998887654332222211 122345566676
Q ss_pred -CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 251 -DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 251 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
-+.++-.+.-|.|.+||+-+.+.+..+..-. ....
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~-----~n~~--------------------------------------- 391 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD-----ENYS--------------------------------------- 391 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEEe-----eccc---------------------------------------
Confidence 4567777888899999887766554432100 0000
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--------CCC--cEEEEeCCCCce----E
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--------FDK--SIKLWNGTTGKF----V 395 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--------~d~--~v~lwd~~~~~~----~ 395 (473)
..|+ .+...+++++.+-.|.+++|+- .|| .+++|-...... .
T Consensus 392 ------~~~~------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~ 447 (792)
T KOG1963|consen 392 ------DGDV------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN 447 (792)
T ss_pred ------CCcc------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence 0000 1123466677777788888863 233 578896553322 1
Q ss_pred -EEeeCCccCEEEEEEec-CCC-EEEEEeCCCcEEEEECCCCc----------eeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 396 -AVFRGHVGPVYQISWSA-DSR-LLLSGSKDSTLKVWDIRTQK----------LKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 396 -~~~~~h~~~v~~v~~sp-~g~-~l~s~s~Dg~i~iwd~~~~~----------~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
.+...|...+...++.+ ... .++++|.||.++||-+...+ +...-.-|..++++++|+.||. ++++
T Consensus 448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~ 526 (792)
T KOG1963|consen 448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAV 526 (792)
T ss_pred EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEE
Confidence 23356877766666654 333 89999999999999873321 1111112678899999999994 6777
Q ss_pred eCCCcEEecc
Q 011978 463 GKDRVLKLWM 472 (473)
Q Consensus 463 ~~D~~i~~w~ 472 (473)
+.|++|.+|+
T Consensus 527 s~~~~Itiwd 536 (792)
T KOG1963|consen 527 SFDDTITIWD 536 (792)
T ss_pred ecCCEEEEec
Confidence 8888999996
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3e-17 Score=142.55 Aligned_cols=164 Identities=29% Similarity=0.499 Sum_probs=136.0
Q ss_pred ecCccccEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978 236 LSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (473)
Q Consensus 236 ~~~h~~~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
..||.++|..+.|+| |..|++|+.|.+|.+|++..+.+.+.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------- 119 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------- 119 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence 468999999999987 45799999999999999876543221
Q ss_pred HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCC
Q 011978 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG 392 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~ 392 (473)
...+...+.+|+..|.-++|+|. .+.|++++.|.+|.+||+.+|
T Consensus 120 -----------------------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 120 -----------------------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred -----------------------------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence 11345667889999999999995 578999999999999999999
Q ss_pred ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEEEEEEeeCCCEEEEE---eCCCcE
Q 011978 393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGEKVASG---GKDRVL 468 (473)
Q Consensus 393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s~d~~~l~s~---~~D~~i 468 (473)
+.+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++...+-.+|.+ +-..+.|-.+|+.+-+| ..+.++
T Consensus 165 eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 165 EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 9888887 999999999999999999999999999999999999887777875 44567788888844433 246788
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
-||.
T Consensus 244 aLwd 247 (472)
T KOG0303|consen 244 ALWD 247 (472)
T ss_pred eccC
Confidence 8885
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4.6e-17 Score=141.43 Aligned_cols=200 Identities=23% Similarity=0.430 Sum_probs=157.5
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-------eEEEEecCccccEEEEEecCC--CeEEEee
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-------KCVICLSGHTLAVTCVKWGGD--GVIYTGS 258 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~--~~l~s~~ 258 (473)
...||++.|..+.|.|.+ ...+++||.|.+|+||++..+ +.+..+.||...|--++|++- +.|++++
T Consensus 76 ~v~GHt~~vLDi~w~Pfn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CccCccccccccccCccC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 467999999999999964 347999999999999998754 346778899999999999874 4789999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|.+|.+|++.+|..+-++
T Consensus 152 ~Dn~v~iWnv~tgeali~l------------------------------------------------------------- 170 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITL------------------------------------------------------------- 170 (472)
T ss_pred CCceEEEEeccCCceeeec-------------------------------------------------------------
Confidence 9999999999887643221
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC-EEEEEEecCCCEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQISWSADSRLL 417 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~-v~~v~~sp~g~~l 417 (473)
.|.+.|.++.|+-||.+|++.+.|+.|||||.++++.+..-.+|.+. -..+.|-.+|..+
T Consensus 171 -------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 171 -------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred -------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 26677899999999999999999999999999999999888888763 4557788888855
Q ss_pred EEEe---CCCcEEEEECCCCc---eeecccccCCCEEEEEEeeCCCEEE-EEeCCCcEEecc
Q 011978 418 LSGS---KDSTLKVWDIRTQK---LKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM 472 (473)
Q Consensus 418 ~s~s---~Dg~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~~w~ 472 (473)
-+|- .+..+-+||....+ ..+++... ..|.---|.+|.+.+. +|-.|+.||.|.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4442 47789999876532 34566543 3455556788888775 555899999763
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=5.8e-16 Score=129.43 Aligned_cols=271 Identities=20% Similarity=0.276 Sum_probs=185.3
Q ss_pred cEEEEEEC--CC-CCeEEEEe----CCCeEEEEeCC--CCceeEE-EcCCCCCEEEEEECCCCC-----eEEEEecCCeE
Q 011978 110 AVLSVAFS--PD-GRQLASGS----GDTTVRLWDLN--TQTPMFK-CTGHKNWVLCIAWSADGK-----HLVSGSKAGEL 174 (473)
Q Consensus 110 ~V~~~~~s--p~-~~~lat~s----~d~~i~iwd~~--~~~~~~~-~~~~~~~v~~l~~s~dg~-----~l~s~~~dg~i 174 (473)
++.++.|+ |+ +.+||.|+ ..+.|.|-.+. +++.+.. ...|..+++.+.|.|+.. +||+.+ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 45667776 33 45688887 34566666543 2222211 136889999999999863 455543 589
Q ss_pred EEeeCCC--Cccc------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE---EEEecCccccE
Q 011978 175 QCWDPQT--GKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAV 243 (473)
Q Consensus 175 ~iwd~~~--~~~~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v 243 (473)
++|.+.. ++.. ......+.+++++..|+... .+++.++|-|-+..|||++++.. -.++-.|...|
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d----p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD----PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCC----cceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 9998863 2211 11124456788888888653 46899999999999999998632 45677899999
Q ss_pred EEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeecc---CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 244 ~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
..++|..++ .+++.+.||.+|+||++.-.....+... ..+...+++++.
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq-------------------------- 253 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-------------------------- 253 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC--------------------------
Confidence 999998755 6889999999999999864322111110 112222222211
Q ss_pred hhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCc---
Q 011978 319 ERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK--- 393 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~--- 393 (473)
.+..+++ +-+...+.+-|++....+..++.+|...|+.++|.|. ...|++++.|..+-+||+.+.-
T Consensus 254 ---------DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 254 ---------DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred ---------CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 1122332 2345568889999888999999999999999999995 6789999999999999987532
Q ss_pred ---eEEEeeCCccCEEEEEEec-CCCEEEEEeC
Q 011978 394 ---FVAVFRGHVGPVYQISWSA-DSRLLLSGSK 422 (473)
Q Consensus 394 ---~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~ 422 (473)
++..+. -.+.|+.+.|++ .+..++.+..
T Consensus 325 ~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 325 GEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 222333 456899999996 4567777653
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.2e-16 Score=135.31 Aligned_cols=235 Identities=23% Similarity=0.360 Sum_probs=174.5
Q ss_pred CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
..+|+|.+|++|+..++.+.....|.||...... .....+..|...|+++.|.|. .+++++|+.|+.-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-----snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-----SNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-----CCceeEccCCCCcccccc
Confidence 4679999999999999999999999999876655 234567889999999999984 358999999999999998
Q ss_pred CC-C--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978 228 SL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (473)
Q Consensus 228 ~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (473)
.. + +....+..++.+.+|+.|+|.+ .+++|+.-+.|.+|-++...--
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW----------------------------- 135 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW----------------------------- 135 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-----------------------------
Confidence 43 3 3455667789999999999876 6888998888888865432100
Q ss_pred CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~ 383 (473)
|- .+ ..-..+...|.+++|+|++-+||+||.|+.
T Consensus 136 ----------------------------------------WV---sK---hikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 136 ----------------------------------------WV---SK---HIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred ----------------------------------------eh---hh---hhCCccccceeeeeccCCcceecccccCcc
Confidence 00 00 000122356899999999999999999999
Q ss_pred EEEEeCC-----C-------------CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeecccccC
Q 011978 384 IKLWNGT-----T-------------GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQDLPGHA 444 (473)
Q Consensus 384 v~lwd~~-----~-------------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~ 444 (473)
+|+|..- + |+++..+....+.|..+.|+|+|..|+-.+.|+++.+-|..... ..+.+..-.
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~ 249 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ 249 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence 9999631 1 23344454566889999999999999999999999999987653 233333223
Q ss_pred CCEEEEEEeeCCCEEEEEeCC
Q 011978 445 DEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 445 ~~i~~l~~s~d~~~l~s~~~D 465 (473)
-+..++.|-.+ +.++.++.|
T Consensus 250 lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 250 LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred CCceeeEeecC-CceeecCCC
Confidence 45667777654 345555555
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1e-16 Score=153.62 Aligned_cols=233 Identities=22% Similarity=0.247 Sum_probs=160.7
Q ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCcccc-ccCCCcCCcEEEEEecee
Q 011978 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSG-NPLSGHKKWITGISWEPV 204 (473)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~ 204 (473)
+..|.+||..... ...+..|...+.+..|||||++|+.++.+ ..|++||+.+++... ....+| ...+.|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP- 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP- 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence 4689999987654 34456778889999999999999987754 369999998875321 122333 23466766
Q ss_pred ccCCCCceEEEee-CCCcEEEE--ECCCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeec
Q 011978 205 HLNAPCRRFVSAS-KDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 205 ~~~~~~~~~~s~s-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
++.+++.++ .+|...|| |+.++.. ..+..+...+.+..|++||. |+ ++..++...+|++......
T Consensus 258 ----DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----- 327 (429)
T PRK01742 258 ----DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----- 327 (429)
T ss_pred ----CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----
Confidence 566777654 67876665 6655543 44556666778899999984 44 4456777777764321000
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
...+ .+
T Consensus 328 -------------------------------------------------------------------------~~~l-~~ 333 (429)
T PRK01742 328 -------------------------------------------------------------------------ASLV-GG 333 (429)
T ss_pred -------------------------------------------------------------------------eEEe-cC
Confidence 0000 01
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCcee
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLK 437 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~~~ 437 (473)
.. ...+|+|||++|+..+.++ +.+||+.+++.......+ ...++.|+|||++|+.++.++.+.+|++. .++..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 11 2357899999999888765 556999888765433322 23568899999999999999998888763 57778
Q ss_pred ecccccCCCEEEEEEeeC
Q 011978 438 QDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 438 ~~~~~h~~~i~~l~~s~d 455 (473)
+.+.+|.+.+...+|||-
T Consensus 409 ~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEccCCCCCCCCcccCCC
Confidence 888888888899999984
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=1e-16 Score=144.59 Aligned_cols=247 Identities=19% Similarity=0.333 Sum_probs=156.9
Q ss_pred EEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
+....++-.|++|+..- -..+++|+.+.+.....+ +.+- .-.+-.|+...-.+.+.-++.|-.-|.+.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecc
Confidence 34444445566665432 246778877643222111 1111 111222322222233445667777888888876
Q ss_pred CCCeEEEEec----CccccEEEEEecC--CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 228 SLRKCVICLS----GHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 228 ~~~~~~~~~~----~h~~~v~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
...+....+. -....|+|+.|-+ ++.++.+-.+|.+++||..-- +-+-.+.+.
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~--------------~~~t~p~~~------- 261 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV--------------CGATAPSYQ------- 261 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc--------------ccCCCCccc-------
Confidence 5432211111 1235799999975 457888899999999986210 000000000
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d 381 (473)
...-.+...|..|.-.....+..+..--...|+..+|+|||++||+.|.|
T Consensus 262 ------------------------------~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 262 ------------------------------ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred ------------------------------ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence 00000111122222222223333333334578999999999999999999
Q ss_pred CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978 382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 453 (473)
Q Consensus 382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 453 (473)
|.+||||..+.+++..++.-.+...||+|||||+||++|+.|--|.||.+..++....-.||...|..|+|.
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999998888877777899999999999999999999999999999999999999999999999998
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.3e-16 Score=150.49 Aligned_cols=282 Identities=15% Similarity=0.257 Sum_probs=191.1
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCC--cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS- 228 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~- 228 (473)
.-..+.|+|-...++++...-.|.+||.+.++.....-.+ ....|+.+.+. ...++..+++|+.||.||||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li---Ne~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI---NEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee---cccchhheeeeccCceEEEecccc
Confidence 3456788888889999988889999999988764322111 12345555443 23466789999999999999642
Q ss_pred ----CCeEEEEecC---c----cccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeecc-CceEEEEEeccccee
Q 011978 229 ----LRKCVICLSG---H----TLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYAL 295 (473)
Q Consensus 229 ----~~~~~~~~~~---h----~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 295 (473)
..+.+....+ + ...=.-+.|.. .|.|++++.-..|+|||....+.+..+... +..+.++....
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~---- 1218 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL---- 1218 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc----
Confidence 2233322221 1 11112245654 467888877899999999876666554321 11222221110
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC--CeeeecCcccc--eeEEEECCC
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQL--VNHVYFSPD 371 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~--v~~v~~sp~ 371 (473)
...+.++.|..||.+++||.+.... .......|... |..+.+.++
T Consensus 1219 -------------------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1219 -------------------------------VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred -------------------------------cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 1245789999999999999765433 33445567666 889999987
Q ss_pred CcE-EEEEECCCcEEEEeCCCCceE--EEeeCCc--c-CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee--ec----
Q 011978 372 GQW-VASASFDKSIKLWNGTTGKFV--AVFRGHV--G-PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK--QD---- 439 (473)
Q Consensus 372 g~~-lasgs~d~~v~lwd~~~~~~~--~~~~~h~--~-~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~--~~---- 439 (473)
|-- |++|+.||.|++||++..... .....|. | ..+++..+++...+|+|+. +.|+||++...+.. +.
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 655 999999999999999874222 1222333 4 4899999999999999998 99999998753321 11
Q ss_pred ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 440 ~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+......+.++.|+|-.-.||.|..|.+|.||.
T Consensus 1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 111234678999999998999999999999874
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.5e-15 Score=131.17 Aligned_cols=224 Identities=16% Similarity=0.225 Sum_probs=153.1
Q ss_pred CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEE
Q 011978 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS 286 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 286 (473)
.+...+..|+.||. +++.................|-..-|+..=. ++....-+.+++.+.+.+..+..+... ..|.+
T Consensus 15 qd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~ 92 (391)
T KOG2110|consen 15 QDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP-TSILA 92 (391)
T ss_pred cceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC-CceEE
Confidence 34445555666653 6666543322111111222344444554422 223333356888888877666554332 23444
Q ss_pred EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC--ccccee
Q 011978 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVN 364 (473)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~ 364 (473)
+.+. ..+++.+-.+. |+++|+...+........ +...+.
T Consensus 93 VrmN--------------------------------------r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 93 VRMN--------------------------------------RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred EEEc--------------------------------------cceEEEEEccc-EEEEecccceeehhhhccCCCccceE
Confidence 4332 23455555444 999998776654444333 455566
Q ss_pred EEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceeeccc
Q 011978 365 HVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST-LKVWDIRTQKLKQDLP 441 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~ 441 (473)
++++++.+.|+|.-+. .|.|.+||..+.+.+..+..|.+++-+++|+++|.+||++|..|+ ||++.+.+++.+.+++
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 6666677789997543 478999999999999999999999999999999999999999996 7999999998887775
Q ss_pred ccC--CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 442 GHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 442 ~h~--~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
-.. ..|++++|+||+++|++.|..++|.+|.
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 332 4789999999999999999999999985
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=147.60 Aligned_cols=165 Identities=24% Similarity=0.405 Sum_probs=129.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECC--CCCeEEEEecCCeEEEe
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCW 177 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iw 177 (473)
.++|.||++-|+|++|+.+|.+|++||.|-.+.|||.-..+++..+ ++|.+-|.|+.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3568899999999999999999999999999999998876666554 69999999999998 46788999999999999
Q ss_pred eCCCCc---------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EE------E---EecC
Q 011978 178 DPQTGK---------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CV------I---CLSG 238 (473)
Q Consensus 178 d~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~------~---~~~~ 238 (473)
|+...+ ........|...|..++-.|.. ...|-++++||+++-+|++... |. . .+.+
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~----PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG----PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC----CceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 997522 1223356677888877766543 2579999999999999998621 11 1 1112
Q ss_pred ccccEEEEEecCCC--eEEEeecCCeEEEEECC
Q 011978 239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETT 269 (473)
Q Consensus 239 h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~ 269 (473)
......|+..+|.. +|+.|+.|-..++||.+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 23455688888754 78999999999999954
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=5e-16 Score=140.13 Aligned_cols=260 Identities=19% Similarity=0.352 Sum_probs=180.8
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEE-EEEE---C----CCCCeEEEEecCCeEEEe
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-MFKCTGHKNWVL-CIAW---S----ADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-~~~~~~~~~~v~-~l~~---s----~dg~~l~s~~~dg~i~iw 177 (473)
|+..|-|+.|+.+...+.+++++..+.-||+.+... +..+. +..|. .+.. + .....++.++.||.+.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 666777889988887777766665666666643321 11110 01010 0000 0 123468889999999998
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY 255 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (473)
+- .++ .......|.+.+.+-.|+| ++.-++++++||.|++|. ++|....++.....+|.|++|.|+. .++
T Consensus 91 ~k-~~r-VE~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 91 NK-SAR-VERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred cc-cch-hhhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 63 333 3345788999999989987 566799999999999997 3444333444556789999999876 455
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+.+ +.+.+=-+.....+-..+.|++.|.++.+++. .+.+++|
T Consensus 163 c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~sg 204 (737)
T KOG1524|consen 163 CQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIASG 204 (737)
T ss_pred ecC--CeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceeec
Confidence 544 45555555555556678899999999988764 4569999
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
+.|...++||.. ..+......|...|++++|.|+ +.++.+|.. ++|+= +...+.|..++||+||.
T Consensus 205 GED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 205 GEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGT 269 (737)
T ss_pred CCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCc
Confidence 999999999953 3444555678889999999999 777777653 44421 22457899999999999
Q ss_pred EEEEEeCCCcEEEE
Q 011978 416 LLLSGSKDSTLKVW 429 (473)
Q Consensus 416 ~l~s~s~Dg~i~iw 429 (473)
.+++|...|.+.+=
T Consensus 270 Q~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 270 QATCGTSTGQLIVA 283 (737)
T ss_pred eeeccccCceEEEe
Confidence 99999988876543
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=2.4e-15 Score=148.17 Aligned_cols=341 Identities=16% Similarity=0.179 Sum_probs=202.1
Q ss_pred eecccccccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCCCeEE
Q 011978 95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV 166 (473)
Q Consensus 95 ~~~~~~~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~ 166 (473)
++.+..++.+..|...|..++.+++. .+++|||.||+|++||...- +......--...+.++...+.++.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 34556778889999999999988765 99999999999999997531 11112222356789999999999999
Q ss_pred EEecCCeEEEeeCCCC--ccc----cccCCCc-CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--c
Q 011978 167 SGSKAGELQCWDPQTG--KPS----GNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--S 237 (473)
Q Consensus 167 s~~~dg~i~iwd~~~~--~~~----~~~~~~~-~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~ 237 (473)
.++.||.|++.+++.- +.. ......+ .+.+..+. ..........++.+...+.+..||++...-...+ .
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~--a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH--AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee--cccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999988652 110 0011111 12222221 1111111247888889999999999876544333 2
Q ss_pred CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 238 ~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
...+.|++++.++.+ .++.|...|.+-+||++-+..+.+... +..++..+...+-+...
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~------------------- 1253 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE------------------- 1253 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC-------------------
Confidence 334679999999876 588999999999999998888777643 33556666655432100
Q ss_pred HHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCeeeec------------------CcccceeEEEECCCCcEEE
Q 011978 316 AALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMT------------------GHQQLVNHVYFSPDGQWVA 376 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~------------------~~~~~v~~v~~sp~g~~la 376 (473)
.-.+.+++ ..+.+-+|+...+........ .+.-......+...+..+.
T Consensus 1254 -------------S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1254 -------------SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred -------------ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee
Confidence 01122222 344455555443321111000 1111122234445567899
Q ss_pred EEECCCcEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE---ECCC-----Cceee--------c
Q 011978 377 SASFDKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW---DIRT-----QKLKQ--------D 439 (473)
Q Consensus 377 sgs~d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw---d~~~-----~~~~~--------~ 439 (473)
+|+.|..||.||....+.. ....+.+........+.+ .-++.++. .+..+ .... ++... .
T Consensus 1321 tggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~--~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQ--FIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred ecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCc--cchhhhhhhhhcCchhhcccccccccCCCCC
Confidence 9999999999998766543 222222222222222211 11222221 11111 0000 00011 1
Q ss_pred ccccCCCEEEEEEeeC-CCEEEEEeCCCcEEecc
Q 011978 440 LPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 440 ~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~ 472 (473)
-..|.+.|+++++-.. ..+|++++.||.|+||+
T Consensus 1398 s~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 1247888998876543 45889999999999995
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4.5e-15 Score=126.31 Aligned_cols=306 Identities=19% Similarity=0.257 Sum_probs=195.7
Q ss_pred EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE
Q 011978 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (473)
Q Consensus 156 l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~ 235 (473)
..|||+|+++|+++.- .+.|-|..+-+... .+ ..-+.|..+.|... .+..+-....++.|.+|++...+--..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q-lf-~cldki~yieW~ad----s~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ-LF-LCLDKIVYIEWKAD----SCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHH-HH-HHHHHhhheeeecc----ceeeeeeeeccceEEEEEeecceeEEE
Confidence 5799999999999876 77777766543211 11 11234555666532 334455667889999999987766666
Q ss_pred ecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978 236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (473)
Q Consensus 236 ~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
+......+.+++|+||| +|.+...|-.|.+|.+.+.+.. .++.....+..++++++..+.........+.|.....-
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 66677889999999998 4778899999999998875543 33444445677788887665544333322222221111
Q ss_pred HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~ 393 (473)
+...+.+..........-+--+-++..+.+||........ .....-.+..++|+|.+++|+.|+.|+.+|+-+--+.+
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 1111111111111111224445566778889854322111 11222457889999999999999999999885411100
Q ss_pred e------------------------------------------------------------EEEee------CCccCEEE
Q 011978 394 F------------------------------------------------------------VAVFR------GHVGPVYQ 407 (473)
Q Consensus 394 ~------------------------------------------------------------~~~~~------~h~~~v~~ 407 (473)
. +..++ .....+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 0 00111 11224677
Q ss_pred EEEecCCCEEEEEeC--CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 408 ISWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 408 v~~sp~g~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++||+|..++++-.+ -+.+.+||++..+....+. ...+|.+..|.|....|+.+.....+.+|.
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 999999999998643 4679999999877655554 345799999999999999888888898885
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=5.2e-15 Score=125.54 Aligned_cols=155 Identities=18% Similarity=0.283 Sum_probs=126.3
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGK 183 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~ 183 (473)
..+|+|.+|++|+..+|.+-....|.||...... +...++.|...|+.++|+|..+.|++|+.|..-++|... .++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 3589999999999999999999999999987654 567788999999999999999999999999999999984 333
Q ss_pred cc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE----EEecCccccEEEEEecCCCe-EEEe
Q 011978 184 PS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV-IYTG 257 (473)
Q Consensus 184 ~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-l~s~ 257 (473)
-. ...+..++...+++.|.|. .+.|++||..+.|.+|-++..+-- ..-+.+...|+++.|.+++. +++|
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred eccceeEEEeccceeeEeecCc-----CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 21 1234567788899999984 368999999999999987643221 12245677899999999985 6788
Q ss_pred ecCCeEEEEE
Q 011978 258 SQDCTIKVWE 267 (473)
Q Consensus 258 ~~d~~i~~wd 267 (473)
+.|+..|+|.
T Consensus 165 s~D~k~rVfS 174 (361)
T KOG1523|consen 165 STDGKCRVFS 174 (361)
T ss_pred ccCcceeEEE
Confidence 9999999986
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-14 Score=118.67 Aligned_cols=227 Identities=19% Similarity=0.286 Sum_probs=153.2
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCC---------CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
.|.+-+|+|.+++|++|..+|.|.+..++. |+....+..+|..+++.+.|.. ..+++|+ ||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~g-dG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeecc-CceE
Confidence 355667899999999999999999998753 2333345589999999998863 2445554 5999
Q ss_pred EEEECCCCeE------EEE--ecCcc-----ccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978 223 RIWDVSLRKC------VIC--LSGHT-----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (473)
Q Consensus 223 ~iwd~~~~~~------~~~--~~~h~-----~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 288 (473)
+=|..+.... +.. .+-|. -.|.++...| ++-++.++.|+.++-||+++|+..+.+++|...+-++.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 9987653221 000 11121 2456666664 34566777899999999999988888877766554442
Q ss_pred ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 368 (473)
-
T Consensus 164 -------------------------------------------------------------------------------~ 164 (325)
T KOG0649|consen 164 -------------------------------------------------------------------------------G 164 (325)
T ss_pred -------------------------------------------------------------------------------e
Confidence 2
Q ss_pred CCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---------Cc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---------HV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 369 sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---------h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
-.....+.+|+.||++|+||.++++++.++.. |. .+|.+++-+. .+|++|+ ...+.+|++++.+...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceE
Confidence 22233478899999999999999988776542 22 2466776644 4887765 4468999999877665
Q ss_pred cccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 439 DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 439 ~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
.++- ...+..+.|-. +.++++|..+.+.-|
T Consensus 242 vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFPI-PARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEec-ccceeEeeeec--ceEEEeccccceeee
Confidence 5442 34566777764 456777766555554
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8.4e-15 Score=128.89 Aligned_cols=191 Identities=22% Similarity=0.263 Sum_probs=141.2
Q ss_pred EEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.+++|+.+| .+++++.||++|+|+..+...+.....|...|.++.++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg----------------------------- 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG----------------------------- 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------------------------
Confidence 578899885 68999999999999988887777778888899999998873
Q ss_pred cccCCCCceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCC-----cEEEEEECCCcEEEEeCCCCce--
Q 011978 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKF-- 394 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g-----~~lasgs~d~~v~lwd~~~~~~-- 394 (473)
..+++-+.| ..++|+...+....... ..-......+.|+.|+ ..++.-..-+.|+.||+.....
T Consensus 199 -------k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 199 -------KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred -------cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 357787888 89999987652221111 1222345567788776 3333334456677776543221
Q ss_pred -E--EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 395 -V--AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 395 -~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
+ ...-.....|++++.|+||+++|.|+.||.|-|++..+.+..+- -+.|...|+.+.|+||.+++++.+.|.++.|
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 1 11111234799999999999999999999999999988666543 3568899999999999999999999988776
Q ss_pred c
Q 011978 471 W 471 (473)
Q Consensus 471 w 471 (473)
.
T Consensus 351 ~ 351 (398)
T KOG0771|consen 351 T 351 (398)
T ss_pred E
Confidence 4
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=1e-13 Score=129.00 Aligned_cols=246 Identities=15% Similarity=0.232 Sum_probs=151.3
Q ss_pred ccEEEEEECCCCCeEEEEe-CCCeEEEEeCCC-Cce--eEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCc
Q 011978 109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGK 183 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s-~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~ 183 (473)
+....++++|++++|++++ .++.|.+|++.. +.. .... ........++|+|+|++|++++. ++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4566789999999987765 578999999863 321 1111 12334678999999999988775 7899999986422
Q ss_pred cccccC--CCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEE-------EecCccccEEEEEecCCCe
Q 011978 184 PSGNPL--SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDGV 253 (473)
Q Consensus 184 ~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~ 253 (473)
...... ..+......+.+.| +++++ ++...++.|.+||+.+...+. .... ......+.|++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~ 187 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence 111111 11112234444544 44455 556667999999997633221 1111 22356789999874
Q ss_pred -EEEee-cCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 254 -IYTGS-QDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 254 -l~s~~-~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
++++. .+++|.+|++.. ++. .. +..+...+.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~-~~-------~~~~~~~p~------------------------------------- 222 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEI-EC-------VQTLDMMPA------------------------------------- 222 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCE-EE-------EEEEecCCC-------------------------------------
Confidence 55555 489999999863 221 10 000000000
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceEEEeeCCc---cCE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHV---GPV 405 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~~~~~~h~---~~v 405 (473)
. . .+......+.++|+|++++++.. ++.|.+|++........+.++. ...
T Consensus 223 ------------------------~-~-~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 223 ------------------------D-F-SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred ------------------------c-C-CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 0 0 01112346889999999998854 6899999986432111222221 234
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECC
Q 011978 406 YQISWSADSRLLLSGSK-DSTLKVWDIR 432 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~s~-Dg~i~iwd~~ 432 (473)
..++|+|||++|+++.. +++|.+|++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 57899999999998775 8999999875
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=1.4e-14 Score=138.24 Aligned_cols=246 Identities=18% Similarity=0.269 Sum_probs=173.9
Q ss_pred CcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCce--eE----EEcCCCCCEEEEEECCCCC--eEEEEecCCeEEEe
Q 011978 107 HTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTP--MF----KCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCW 177 (473)
Q Consensus 107 h~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~--~~----~~~~~~~~v~~l~~s~dg~--~l~s~~~dg~i~iw 177 (473)
-...|.|+.|+|.. .++|.|..+|+|.+||+..+.. .. ....|..++..+.|..+-. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35679999999975 5677788999999999976543 21 1236889999999986544 49999999999999
Q ss_pred eCCCCccc--cccC---C------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE---ECCCCe-----EEEEecC
Q 011978 178 DPQTGKPS--GNPL---S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW---DVSLRK-----CVICLSG 238 (473)
Q Consensus 178 d~~~~~~~--~~~~---~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw---d~~~~~-----~~~~~~~ 238 (473)
+++.-... ...+ . .-...++.+.|.+... ..|+.|+.+|.|.-- +..... ....+..
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p----~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~ 396 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP----NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT 396 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC----ceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence 87642210 0000 0 1123467788877543 579999999988762 222221 2234556
Q ss_pred ccccEEEEEecCCC-eEEEeecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (473)
Q Consensus 239 h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
|.+.|.++.++|=+ .++..+.|.++++|.-. ....+..+..+...+..++++|..
T Consensus 397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr----------------------- 453 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR----------------------- 453 (555)
T ss_pred cCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence 78899999998744 33333339999999876 555666666666778888887752
Q ss_pred HHhhhhcccCCCCceEEEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
+..++++..||.+.+||+.... .+.....-.....+.+.|+++|+.|++|...|++.+|++..
T Consensus 454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4568899999999999986433 23333323345667788999999999999999999999853
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.2e-14 Score=126.64 Aligned_cols=271 Identities=16% Similarity=0.230 Sum_probs=177.2
Q ss_pred CCCEEEEEECCCCC--eEEEEecCCeEEEeeCCCCccccc-----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 150 KNWVLCIAWSADGK--HLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 150 ~~~v~~l~~s~dg~--~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
...|.+++|.-|++ .|...+.+-.+............. ......+.|.++.. ....+++|-.+|.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-------~dg~Litc~~sG~l 127 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-------ADGTLITCVSSGNL 127 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-------cCCEEEEEecCCcE
Confidence 34566777765443 333333555555555544332221 12222334444332 33588999999999
Q ss_pred EEEECCCC-----eEEEEecCccccEEEEEecC--CCeEEEeecC--CeEEEEECCCCceeeeeeccCceEEEEEecccc
Q 011978 223 RIWDVSLR-----KCVICLSGHTLAVTCVKWGG--DGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (473)
Q Consensus 223 ~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~--~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~ 293 (473)
.+|....+ ..+..-.+ ..+..+.-.+ .+++++|+.. ..+++||+++.+.+.+-+.-...-..+
T Consensus 128 ~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L------ 199 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL------ 199 (412)
T ss_pred EEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc------
Confidence 99988733 22221111 1222222222 2356779988 899999999886655433211100000
Q ss_pred eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 373 (473)
+.-.++-.. ..+.+..+..+++++.-+.+++||+..++.|...+.-....++++...|+|+
T Consensus 200 --rVPvW~tdi-----------------~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn 260 (412)
T KOG3881|consen 200 --RVPVWITDI-----------------RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN 260 (412)
T ss_pred --eeeeeeccc-----------------eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc
Confidence 000000000 0011222457999999999999999998889888877788999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978 374 WVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 452 (473)
Q Consensus 374 ~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 452 (473)
+|++|..-+.+..||.+.++.... +++-.|.|.++..+|.+++||+++-|..|||+|+.+.+++....- ...++.+-+
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~ 339 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILL 339 (412)
T ss_pred EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEe
Confidence 999999999999999999998876 889999999999999999999999999999999999766543321 234556665
Q ss_pred eeC
Q 011978 453 SPD 455 (473)
Q Consensus 453 s~d 455 (473)
.++
T Consensus 340 ~~~ 342 (412)
T KOG3881|consen 340 RDD 342 (412)
T ss_pred cCC
Confidence 544
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.4e-15 Score=140.88 Aligned_cols=219 Identities=25% Similarity=0.302 Sum_probs=146.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeE
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGS-KAGEL 174 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i 174 (473)
...+..|...+.+++|||||++|+.++.+ ..|++||+.++.. +..+.+| ..+++|+|||+.|+.++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 45567788899999999999999987643 4799999988753 2223333 44689999999988764 67765
Q ss_pred EEe--eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978 175 QCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 175 ~iw--d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (473)
.|| |+.++... .+..+...+....|+| ++..++..+ .++...||++..........++.. .+..|+++
T Consensus 273 ~Iy~~d~~~~~~~--~lt~~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpD 343 (429)
T PRK01742 273 NIYVMGANGGTPS--QLTSGAGNNTEPSWSP-----DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISAD 343 (429)
T ss_pred EEEEEECCCCCeE--eeccCCCCcCCEEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCC
Confidence 554 66555432 3445555667777877 455565444 578888887643211111113332 45678888
Q ss_pred Ce-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 252 GV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 252 ~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
|. ++..+.++ +.+||+.+++......
T Consensus 344 G~~ia~~~~~~-i~~~Dl~~g~~~~lt~---------------------------------------------------- 370 (429)
T PRK01742 344 GKTLVMINGDN-VVKQDLTSGSTEVLSS---------------------------------------------------- 370 (429)
T ss_pred CCEEEEEcCCC-EEEEECCCCCeEEecC----------------------------------------------------
Confidence 74 55555544 5558876654311000
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC--CCCceEEEeeCCccCEEEE
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG--TTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~--~~~~~~~~~~~h~~~v~~v 408 (473)
.+ ...+++|+|||++|+.++.++..++|++ .+|+....+..|.+.+..+
T Consensus 371 ---------------------------~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 371 ---------------------------TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred ---------------------------CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 00 0123579999999999999998888875 3577888888888889999
Q ss_pred EEecC
Q 011978 409 SWSAD 413 (473)
Q Consensus 409 ~~sp~ 413 (473)
+|||-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99984
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=1.3e-16 Score=150.90 Aligned_cols=234 Identities=25% Similarity=0.436 Sum_probs=185.4
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW 266 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~w 266 (473)
.+.+|...|.+..|.. .+.++++|+.|..++||...+..|+....||...|+.++.+.++. +++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDr-----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR-----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeecc-----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 3578988899887654 578999999999999999999999999999999999999988774 7789999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
.+..+..+..+.+|++.|.+++++|- .+.+.||++++||.
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~----------------------------------------~sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPR----------------------------------------ASSSDDGTCRIWDA 299 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCcc----------------------------------------ccCCCCCceEeccc
Confidence 99999999999999999999998873 36788999999996
Q ss_pred CCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-CCEEEEEeC
Q 011978 347 AVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-SRLLLSGSK 422 (473)
Q Consensus 347 ~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~ 422 (473)
+... .+..........+-++.|..++.-++||+.|+.-+.|...... .+...+.-+.++.| ..+.+++-.
T Consensus 300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeee
Confidence 5211 0111111123567778888899999999999988888654221 12222222222222 246666777
Q ss_pred CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEecc
Q 011978 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLWM 472 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~w~ 472 (473)
+-.+.+|++.++.+...+.+|.+.++.+.++|-+..+ .+++.||.+.||.
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 8889999999999999999999999999999987665 5999999999996
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1e-13 Score=120.00 Aligned_cols=234 Identities=17% Similarity=0.265 Sum_probs=158.8
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS 185 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~ 185 (473)
...++.+.|+.+...|..|+.|| .++|..+..............|.-+-|+. .++|..+.+ ..+++.+.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 34577777999999999998887 46777665444332222334466677874 466655544 34888887765543
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEEEecCCC-eEEE--eec
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDG-VIYT--GSQ 259 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~-~l~s--~~~ 259 (473)
.... ....|-++.++. .+++.+=.+. |.|||+++-+.+.++. .+...+..++++.++ +++- ...
T Consensus 82 Ce~~--fpt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 82 CEIF--FPTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred EEEe--cCCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 3222 223455555433 4677776655 9999999988876653 334445555555443 2221 223
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
-|.|.+||+.+-+
T Consensus 152 ~GdV~l~d~~nl~------------------------------------------------------------------- 164 (391)
T KOG2110|consen 152 SGDVVLFDTINLQ------------------------------------------------------------------- 164 (391)
T ss_pred CceEEEEEcccce-------------------------------------------------------------------
Confidence 3555555544322
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEeeCCc--cCEEEEEEecCCCE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHV--GPVYQISWSADSRL 416 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~g~~ 416 (473)
+...+..|.+.+-+++|+|+|.+|||+|..|+ |||+...+|+.+..|+-.. ..|.+++|+||+++
T Consensus 165 ------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 165 ------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 22334467888999999999999999999997 6999999999999987433 35889999999999
Q ss_pred EEEEeCCCcEEEEECCC
Q 011978 417 LLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~ 433 (473)
|++.|..++|.||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998753
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=4.5e-16 Score=138.11 Aligned_cols=267 Identities=17% Similarity=0.292 Sum_probs=187.3
Q ss_pred CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~ 229 (473)
+.+-..+.++.+|++|+.|+..|.+..+|+.+++..... .-...|..+.|... ..|+......-+.|||- .
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn------eq~~AVAQK~y~yvYD~-~ 199 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN------EQFFAVAQKKYVYVYDN-N 199 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc------hHHHHhhhhceEEEecC-C
Confidence 344567899999999999999999999999988753211 11223444554331 24555666778889984 4
Q ss_pred CeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
|..+.+++.| ..|..+.|-|-.+ |++++..|.++.-|+.+|+++..+......+..+..+|-
T Consensus 200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~---------------- 262 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY---------------- 262 (545)
T ss_pred CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc----------------
Confidence 6667777655 3677788888775 667888899999999999988776544444433333221
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
...+-.|...|++.+|.+. ...+..++..|.+.|.+|++.++|+|+||.+.|+.++|||
T Consensus 263 --------------------NaVih~GhsnGtVSlWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 263 --------------------NAVIHLGHSNGTVSLWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred --------------------cceEEEcCCCceEEecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 2246678889999999975 4456677889999999999999999999999999999999
Q ss_pred CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE-CCC--Cceeeccccc--CCCEEEEEEeeCCCEEEEEe
Q 011978 389 GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRT--QKLKQDLPGH--ADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd-~~~--~~~~~~~~~h--~~~i~~l~~s~d~~~l~s~~ 463 (473)
++.-..+.++.. .-+...+++|..|. || +|....|.||. .-. +.....+-.| ...|..|.|.|-...|-.|.
T Consensus 322 lR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 322 LRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred eccccccceeec-CCCccccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 998876666654 34677888887663 33 34455799994 222 1111122222 24788888888776666555
Q ss_pred CCC
Q 011978 464 KDR 466 (473)
Q Consensus 464 ~D~ 466 (473)
..|
T Consensus 399 ~~G 401 (545)
T KOG1272|consen 399 AGG 401 (545)
T ss_pred cCC
Confidence 444
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.5e-15 Score=135.19 Aligned_cols=126 Identities=29% Similarity=0.465 Sum_probs=107.1
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~ 223 (473)
..+.||++-|.||+|+.||.+|++|+.|-.+.|||.-..+....+-.+|.+.|.++.|.|.. ..+.+++|+.|..|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceEE
Confidence 35779999999999999999999999999999999987777777778999999999999964 346889999999999
Q ss_pred EEECCC----------CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCc
Q 011978 224 IWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK 272 (473)
Q Consensus 224 iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~ 272 (473)
++|+.. ......+..|...|..++..+++ .+.+++.||+|+-+|++...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 999974 22344556688888888877766 68899999999999998643
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.2e-12 Score=111.27 Aligned_cols=234 Identities=19% Similarity=0.299 Sum_probs=154.3
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc--cCCCcCCcEEEEEeceeccCCCCceEE-EeeCC------CcE
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFV-SASKD------GDA 222 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~~-s~s~d------g~i 222 (473)
...+++|+.|...++.|. |.-.++|+.+--+.... ...+. -.+..+-| .+++++ .||.+ .++
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G-~~~veMLf-------R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGG-FKIVEMLF-------RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCc-hhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence 355699999887666665 45578887654222110 00000 11111111 122333 33333 479
Q ss_pred EEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCce--EEEEEecccceeeecc
Q 011978 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHW--VNSLALSTEYALRTGA 299 (473)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~ 299 (473)
.|||-...+++.++. ...+|.++.+..+.+++ -..+.|++|...+ -+.++.+.....+ ..++.-..
T Consensus 78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-------- 146 (346)
T KOG2111|consen 78 IIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-------- 146 (346)
T ss_pred EEEecccCcEEEEEE-eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCC--------
Confidence 999977777776653 45688889888775433 3467999998873 3444444321110 11111000
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceE-EEecCCceEEEEeCCCCCC-CeeeecCcccceeEEEECCCCcEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
....| .-|-.-|.+++-|+..... +......|...|.|++.+-+|.++||
T Consensus 147 ----------------------------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 147 ----------------------------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ----------------------------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence 01112 2244567888888765544 45778899999999999999999999
Q ss_pred EECCCc-EEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 378 ASFDKS-IKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 378 gs~d~~-v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
+|..|+ |||||..+|+.+..++. ....|.+++|||++.+||++|+-|++.||.++.
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999997 79999999999998864 235799999999999999999999999999875
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=7.9e-13 Score=122.77 Aligned_cols=296 Identities=19% Similarity=0.163 Sum_probs=166.8
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccccC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 189 (473)
-..+.|+|||+++++++.||.|.++|+.+.+.+....... ....+++|+||++++++. .++.+.++|.++.+......
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 3457899999999999999999999999998877766433 467899999999998776 57999999999877654321
Q ss_pred CC------cCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEE-EecCccccEEEEEecCCCe-E-EEeec
Q 011978 190 SG------HKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGV-I-YTGSQ 259 (473)
Q Consensus 190 ~~------~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~-l-~s~~~ 259 (473)
.+ ....+.++...| ....|+..-. .+.|.+-|....+.+. ....-........|++++. + ++.-.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp --EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred cccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc
Confidence 11 223455555444 2234554444 4777777876543222 1212223455678898873 3 44566
Q ss_pred CCeEEEEECCCCceeeeeec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 260 DCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
.+.+-++|..+++.+..+.. |..+...+. ++.+...-. ..+ .....++.
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~-~~~-------------------------~~~~~~~~ 245 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWA-TSG-------------------------LGYFAIPL 245 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEE-EEB-------------------------SSSSEEEE
T ss_pred cceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEe-ecc-------------------------ccceeccc
Confidence 77999999999887765432 222222221 121100000 000 00011111
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE----ECCCcEEEEeCCCCceEEEeeCCc-cCEEEEEE
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFRGHV-GPVYQISW 410 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg----s~d~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~ 410 (473)
-....+.+||....+.. ..+...... .-+..||+++++... ...++|.++|.++.+.+..+.... ..+..+.|
T Consensus 246 ig~~~v~v~d~~~wkvv-~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVV-KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EE--TTT-STTTBTSEE-EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccCCccccchhhcCeEE-EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 11112223443332222 222222223 557789999999998 345799999999998777765332 25899999
Q ss_pred ecCCCEEEEEeC--CCcEEEEECCCCceeeccc
Q 011978 411 SADSRLLLSGSK--DSTLKVWDIRTQKLKQDLP 441 (473)
Q Consensus 411 sp~g~~l~s~s~--Dg~i~iwd~~~~~~~~~~~ 441 (473)
++||+++..+.. ++.|.+||..+.+.+.+++
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999997655544 3369999999998887776
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=6.6e-13 Score=127.10 Aligned_cols=233 Identities=18% Similarity=0.185 Sum_probs=150.1
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (473)
..|.+||.....+. .+..+...+.+.+|||||+.|+..+. +..|++|++.+++... +......+....|+|
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SP--- 252 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNGAPAFSP--- 252 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcCCeEECC---
Confidence 37889988765433 23445678999999999999987543 3579999998875322 112222234566776
Q ss_pred CCCCceEEEe-eCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCCeEEEE--ECCCCceeeeeec
Q 011978 207 NAPCRRFVSA-SKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVW--ETTQGKLIRELKG 279 (473)
Q Consensus 207 ~~~~~~~~s~-s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~w--d~~~~~~~~~~~~ 279 (473)
++.+++.. +.+| .|.+||+.+++..... .+...+....|++||. |+..+ .++...+| |+.++... .
T Consensus 253 --DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~--- 325 (429)
T PRK03629 253 --DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R--- 325 (429)
T ss_pred --CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E---
Confidence 55566643 4444 5888999887655433 3344667889999984 54443 33444444 33322110 0
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
+..+
T Consensus 326 ----------------------------------------------------------------------------lt~~ 329 (429)
T PRK03629 326 ----------------------------------------------------------------------------ITWE 329 (429)
T ss_pred ----------------------------------------------------------------------------eecC
Confidence 0000
Q ss_pred ccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc---EEEEECCC
Q 011978 360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST---LKVWDIRT 433 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~---i~iwd~~~ 433 (473)
.......+|+|||++|+..+.+ ..|.+||+.+++....... .......|+|||++|+.++.|+. ++++++.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~- 406 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD- 406 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-
Confidence 1123457899999999887654 3588899988865433222 22346789999999999988775 6677774
Q ss_pred CceeecccccCCCEEEEEEee
Q 011978 434 QKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~s~ 454 (473)
++....+.+|...+...+|+|
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCcccCC
Confidence 555567778888888999987
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.8e-13 Score=128.88 Aligned_cols=234 Identities=21% Similarity=0.276 Sum_probs=147.4
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (473)
..|.++|..+.. ...+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +......+....|+|
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SP--- 249 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSP--- 249 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence 467777775433 33445677789999999999999887653 359999998886432 222333445677776
Q ss_pred CCCCceEE-EeeCCCcEEEEEC--CCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECC--CCceeeeeec
Q 011978 207 NAPCRRFV-SASKDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETT--QGKLIRELKG 279 (473)
Q Consensus 207 ~~~~~~~~-s~s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~--~~~~~~~~~~ 279 (473)
++.+++ +.+.++...||.+ ..+. ...+..+........|++||. ++ ++..++...+|.+. +++. ..
T Consensus 250 --DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~--- 322 (427)
T PRK02889 250 --DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR--- 322 (427)
T ss_pred --CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE---
Confidence 455665 5677887777754 3333 344444555556778999884 44 33344555555432 1110 00
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
+ + . +
T Consensus 323 ----------------------------------------------------l-t---------------------~--~ 326 (427)
T PRK02889 323 ----------------------------------------------------V-T---------------------F--T 326 (427)
T ss_pred ----------------------------------------------------E-e---------------------c--C
Confidence 0 0 0 0
Q ss_pred ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCC
Q 011978 360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRT 433 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~ 433 (473)
.......+|+|||++|+..+.++ .|.+||+.+++......+ .......|+|||++|+.++.++ .+++.++ .
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 01122467999999999877654 599999988875443322 2346789999999988877554 3555566 3
Q ss_pred CceeecccccCCCEEEEEEeeC
Q 011978 434 QKLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~s~d 455 (473)
++....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 5555556556667778888873
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.8e-13 Score=129.39 Aligned_cols=233 Identities=24% Similarity=0.289 Sum_probs=148.3
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (473)
..|.+||..+..+ ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +...........|+|
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~~~~~~Sp--- 257 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGINGAPSFSP--- 257 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCccCceECC---
Confidence 4689999865443 3455567789999999999999987744 469999998776432 222333334566666
Q ss_pred CCCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCCe--EEEEECCCCceeeeeec
Q 011978 207 NAPCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCT--IKVWETTQGKLIRELKG 279 (473)
Q Consensus 207 ~~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~--i~~wd~~~~~~~~~~~~ 279 (473)
++.+++ +.+.++ .|.+||+.+++.. .+..+.......+|++||. ++..+ .++. |.++|+.+++..+ +
T Consensus 258 --DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l-- 331 (433)
T PRK04922 258 --DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L-- 331 (433)
T ss_pred --CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e--
Confidence 455554 455555 5899999887653 3444544556788999884 44433 4444 4444443322110 0
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
..+
T Consensus 332 -----------------------------------------------------------------------------t~~ 334 (433)
T PRK04922 332 -----------------------------------------------------------------------------TFQ 334 (433)
T ss_pred -----------------------------------------------------------------------------ecC
Confidence 000
Q ss_pred ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCC
Q 011978 360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRT 433 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~ 433 (473)
......++|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.++++++..
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 01123478999999998876543 5999999888755 332 22245567999999988877653 3578888854
Q ss_pred CceeecccccCCCEEEEEEee
Q 011978 434 QKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~s~ 454 (473)
.....+..+...+...+|+|
T Consensus 413 -~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 -RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CceEEcccCCCCCCCCccCC
Confidence 34455555556677788886
No 218
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-13 Score=118.09 Aligned_cols=246 Identities=14% Similarity=0.180 Sum_probs=171.7
Q ss_pred EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC------CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~ 218 (473)
.+.+|.+.|.++.||.++++|++|+.|-.+++|+++. .+++...-..|...|.++.|.. ....+.+|+.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-----~N~~~~SG~~ 125 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-----ENRFLYSGER 125 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-----CCeeEecCCC
Confidence 3568999999999999999999999999999999753 2333333445668899998764 4457889999
Q ss_pred CCcEEEEECCCCeEEEEecCc--cccEEEEEecC-CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
+++|...|+++.+.+..+... .+.|..+..+| |+.+++.+.++.|.+||.+..+. |...+
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~------~~~~~----------- 188 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN------PISLV----------- 188 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC------CCcee-----------
Confidence 999999999998888766422 24677777665 55788888888888888765321 00000
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcE
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQW 374 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~ 374 (473)
.+........++-|+|. ..+
T Consensus 189 -----------------------------------------------------------~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 189 -----------------------------------------------------------LPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred -----------------------------------------------------------eecCCCccceeeeecCCCcee
Confidence 00111233556778884 568
Q ss_pred EEEEECCCcEEEEeCCCCce-EEE---eeCC---ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC---
Q 011978 375 VASASFDKSIKLWNGTTGKF-VAV---FRGH---VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA--- 444 (473)
Q Consensus 375 lasgs~d~~v~lwd~~~~~~-~~~---~~~h---~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~--- 444 (473)
|++.+..+-+-+||.+.... +.. +.+- ...-.++.|+|+|+.+.+--....=.+||+.++++..--..|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 88999999999999875431 111 1111 1123678999999988876655556778888765432111222
Q ss_pred ----CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 445 ----DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 445 ----~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+.+++|-.|- -+++|+.+-.|.+|.
T Consensus 290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred ceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 246678888764 489999999999996
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4.6e-15 Score=131.83 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=167.1
Q ss_pred CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 287 (473)
.++..++.|+..|.+..+|..+++....+. -...|..+.|-.+..+++......+++||- .|..++.++.+. .|..+
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~-~v~rL 215 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHI-RVARL 215 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcC-chhhh
Confidence 466789999999999999999988776653 234677888877777888888999999995 455555555432 23333
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEE
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 367 (473)
.|-|-. -.|++++..|-+..-|+..++... .+....+.+..++
T Consensus 216 eFLPyH------------------------------------fLL~~~~~~G~L~Y~DVS~GklVa-~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 216 EFLPYH------------------------------------FLLVAASEAGFLKYQDVSTGKLVA-SIRTGAGRTDVMK 258 (545)
T ss_pred cccchh------------------------------------heeeecccCCceEEEeechhhhhH-HHHccCCccchhh
Confidence 333221 147788888889888877654322 2222345567788
Q ss_pred ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447 (473)
Q Consensus 368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i 447 (473)
-+|-+..+-+|...|+|.+|...+.+++..+-.|.++|.++++.++|+|+||.+.|..++|||++....+.++.. .-..
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 899999999999999999999999998888888999999999999999999999999999999998765554443 2345
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 448 FAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+++|..| +..+|....+.||.
T Consensus 338 ~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 SNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ccccccccc--ceeeecCCeeeeeh
Confidence 678888654 44555555688885
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-12 Score=119.71 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=187.8
Q ss_pred CCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEEcCCC-CC-EEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHK-NW-VLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~~~~~-~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
+|...-+.|..+|||+++ |+|.+.-.|++||+..-.. .+..|. .. |.-.-.+.|-..++.-..|.+|.+... -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 467777889999999985 6777899999999976432 233342 22 332333444445555556666655432 12
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeecCC
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDC 261 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~ 261 (473)
..-...++. .-..+.++. ..|. +..++....|.-.+++.|..+.-+......++++..++. |+|++|+.||
T Consensus 126 ~hy~~RIP~---~GRDm~y~~----~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 126 RHYRTRIPK---FGRDMKYHK----PSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred eeeeeecCc---CCccccccC----CCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence 111000000 001122221 2344 444555567777888888888777777788999999875 5677888899
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.+-.||.+....+..+..... |.+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~-v~s------------------------------------------------------- 221 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASS-VNS------------------------------------------------------- 221 (703)
T ss_pred eEEEecchhhhhheeeecccc-cCC-------------------------------------------------------
Confidence 999999887665544432110 000
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEEEecCC--CEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADS--RLL 417 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~g--~~l 417 (473)
.........|+++.|+.+|-.+++|..+|.+.|||+++.+++..- .| .-+|..+.|.+.+ ..+
T Consensus 222 ------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 222 ------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred ------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceE
Confidence 000011235899999999999999999999999999998876553 34 3579999998753 455
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+|. ....++|||-.+++....+... ..++.+++-|++.++.++-.+..+..+
T Consensus 289 ~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 289 VSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred Eec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 544 3457999999999987777543 459999999999999999888776544
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.8e-12 Score=122.64 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=147.4
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (473)
..|.+||..+..+ ..+..|...+.+..|+|||+.|+..+. +..|++||+.+++.. .+..+...+....|+|
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SP--- 255 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSP--- 255 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECC---
Confidence 4788888865443 445677888999999999999988764 468999999887643 2334455556667776
Q ss_pred CCCCceEE-EeeCCCc--EEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCC--eEEEEECCCCceeeeeec
Q 011978 207 NAPCRRFV-SASKDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKG 279 (473)
Q Consensus 207 ~~~~~~~~-s~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~--~i~~wd~~~~~~~~~~~~ 279 (473)
++.+++ +.+.++. |.+||+.++... .+..+........|++||. ++..+ .++ .|.++|+..++.. .
T Consensus 256 --DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~--- 328 (435)
T PRK05137 256 --DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R--- 328 (435)
T ss_pred --CCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E---
Confidence 455554 5555655 667788877653 3455555567788999883 44333 333 4555554332211 0
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
+..+
T Consensus 329 ----------------------------------------------------------------------------lt~~ 332 (435)
T PRK05137 329 ----------------------------------------------------------------------------ISFG 332 (435)
T ss_pred ----------------------------------------------------------------------------eecC
Confidence 0001
Q ss_pred ccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC------CcEEEEE
Q 011978 360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD------STLKVWD 430 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D------g~i~iwd 430 (473)
...+....|+|||++|+..+.+ ..|.+||...+.. ..+.. ...+..+.|+|||++|+..+.+ ..++++|
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 1123456799999999887654 3588888765543 33322 2346788999999988776543 2578888
Q ss_pred CCCCceeecccccCCCEEEEEEee
Q 011978 431 IRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 431 ~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
+..+.. ..+.. ...+...+|+|
T Consensus 411 l~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 411 LTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCCce-EEccC-CCCccCcccCC
Confidence 876544 34432 33466778876
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=5.6e-12 Score=107.72 Aligned_cols=329 Identities=20% Similarity=0.338 Sum_probs=191.9
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCcccc
Q 011978 109 EAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 109 ~~V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~ 186 (473)
+.|.-+.|..|.-++. .+..|+.|.+|++....-..+.....+++.++.|||||++|+ +...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 5667788888877654 456789999999986655556666778899999999997666 55678899999998866543
Q ss_pred ccCCCcCCcEEEEEeceeccC------CCCce---------------E------EEe---e-CCCcEEEEECCCCeEEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLN------APCRR---------------F------VSA---S-KDGDARIWDVSLRKCVIC 235 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~------~~~~~---------------~------~s~---s-~dg~i~iwd~~~~~~~~~ 235 (473)
.... +..+.+++|+|...- .+|.. | ++| + .+..+.+||--....+..
T Consensus 129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2222 223466666653100 00100 0 011 1 223456676443322222
Q ss_pred ecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 236 ~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
. .....+..++|+|-+ .++.|+.|+.+|+-+--+-+....+- |-..+..-... .+....+
T Consensus 207 Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~---~~~ke~~-------------- 267 (447)
T KOG4497|consen 207 Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLH---LLEKETF-------------- 267 (447)
T ss_pred e-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhh---hhhhhhc--------------
Confidence 1 122467888999854 68889999999986644433332211 00000000000 0000000
Q ss_pred HHHHhhhhcccCCCCceEEEecCCceEEEEeCC-------C------CCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-------V------SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~------~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d 381 (473)
...........-. + .|-...+|... . ..++.....+....+..++|++|..|+||-.+.
T Consensus 268 ~~~ql~~~cLsf~-p-------~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 268 SIVQLLHHCLSFT-P-------TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK 339 (447)
T ss_pred chhhhcccccccC-C-------CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence 0000000000000 0 00011111110 0 001112223334567789999999999997543
Q ss_pred --CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE
Q 011978 382 --KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 459 (473)
Q Consensus 382 --~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l 459 (473)
+.+-+||++..+...++. ...+|....|.|....|+.+.....+++|......... .++..-.|..+.|.-+|..+
T Consensus 340 ~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred CCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEE
Confidence 579999999877655553 35689999999998888888777789999876644433 23334579999999999999
Q ss_pred EEEeCCCcE
Q 011978 460 ASGGKDRVL 468 (473)
Q Consensus 460 ~s~~~D~~i 468 (473)
+-.+.|.-.
T Consensus 418 ~l~~kDafc 426 (447)
T KOG4497|consen 418 VLCGKDAFC 426 (447)
T ss_pred EEEcCCceE
Confidence 999998643
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=3.9e-13 Score=113.38 Aligned_cols=108 Identities=31% Similarity=0.611 Sum_probs=87.8
Q ss_pred ccceeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCC
Q 011978 360 QQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQ 434 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~ 434 (473)
...|.+++|+|+|+.+|.. ..++.|.+||.+ ++.+..+. ...++.+.|||+|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4469999999999987654 456799999996 66666664 5678999999999999998754 56999999988
Q ss_pred ceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcEEecc
Q 011978 435 KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM 472 (473)
Q Consensus 435 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~~w~ 472 (473)
+.+.... |. .+..++|||||++|++++. |+.++||.
T Consensus 136 ~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 136 KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 8777664 33 4789999999999999875 67788885
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=2.5e-11 Score=112.76 Aligned_cols=306 Identities=17% Similarity=0.155 Sum_probs=168.7
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEece
Q 011978 124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203 (473)
Q Consensus 124 at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 203 (473)
++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.......+. ...++++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~ 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAVSP 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEEcC
Confidence 455678999999999988888776544444557899999999999999999999999988655443332 234555554
Q ss_pred eccCCCCceEEEe-eCCCcEEEEECCCCeEEEEecCc-------cccEEEEEecCCC-eEEEe-ecCCeEEEEECCCCce
Q 011978 204 VHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSGH-------TLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQGKL 273 (473)
Q Consensus 204 ~~~~~~~~~~~s~-s~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~-~l~s~-~~d~~i~~wd~~~~~~ 273 (473)
++++++++ -..+.+.++|.++.+.+..+... ...+..+..++.+ .++.. -.-+.|-+-|..+.+.
T Consensus 88 -----DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 88 -----DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp -----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred -----CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 56666654 57899999999998888776532 2244555545444 24444 3447777777665432
Q ss_pred eee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978 274 IRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (473)
Q Consensus 274 ~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 352 (473)
... ....+.......+.++ ++. .++....+..+-++|....+..
T Consensus 163 ~~~~~i~~g~~~~D~~~dpd-----------gry------------------------~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPD-----------GRY------------------------FLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TT-----------SSE------------------------EEEEEGGGTEEEEEETTTTEEE
T ss_pred cceeeecccccccccccCcc-----------cce------------------------eeecccccceeEEEeeccceEE
Confidence 211 1111111222223322 221 1333344445556664432211
Q ss_pred eeeec---CcccceeEE---------EECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE
Q 011978 353 KTRMT---GHQQLVNHV---------YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 353 ~~~~~---~~~~~v~~v---------~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
..... .|......+ +....+...++.-....+.+||..+.+.+..+....++ .-+.-+|+++++.+.
T Consensus 208 ~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 208 ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred EEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 11111 111111111 11122222222222235667898999999999877666 778889999999987
Q ss_pred ----eCCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCCEEEEEeCC--CcEEecc
Q 011978 421 ----SKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASGGKD--RVLKLWM 472 (473)
Q Consensus 421 ----s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~~l~s~~~D--~~i~~w~ 472 (473)
...++|.++|.++.+...++.... ..+..+.|++||+++-.+..| +.|.+++
T Consensus 287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 445789999999987776664322 358999999999977544433 3688875
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.7e-12 Score=121.28 Aligned_cols=220 Identities=20% Similarity=0.257 Sum_probs=140.2
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEe---CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCC--eEE
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG--ELQ 175 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s---~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg--~i~ 175 (473)
..+..+...+.+.+|||||+.||..+ .+..|.+||+.+++... +......+..+.|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 44555667899999999999998764 34579999998875432 22233335578999999988865 4444 589
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-CcEEEE--ECCCCeEEEEecCccccEEEEEecCCC
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG 252 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-g~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (473)
+||+++++... +..+...+....|+| +++.++..+.+ +...+| |+.++... .+..+.....+..|++||
T Consensus 271 ~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCC
Confidence 99998876432 233334556677776 55667666543 444555 66655432 222233345567889887
Q ss_pred e-EEEee-cC--CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 253 V-IYTGS-QD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 253 ~-l~s~~-~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
. ++..+ .+ ..|.+||+.+++.. .+.
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt-------------------------------------------------- 371 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLT-------------------------------------------------- 371 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EeC--------------------------------------------------
Confidence 3 44333 22 34666776554321 000
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc---EEEEeCCCCceEEEeeCCccCE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS---IKLWNGTTGKFVAVFRGHVGPV 405 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~---v~lwd~~~~~~~~~~~~h~~~v 405 (473)
. ........|+|||++|+.++.++. +.++++ +|.....+.+|.+.+
T Consensus 372 -----------------------------~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 372 -----------------------------D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQV 420 (429)
T ss_pred -----------------------------C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCc
Confidence 0 000123579999999999998764 677777 456667777888889
Q ss_pred EEEEEec
Q 011978 406 YQISWSA 412 (473)
Q Consensus 406 ~~v~~sp 412 (473)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 9999987
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=1.3e-12 Score=112.22 Aligned_cols=276 Identities=19% Similarity=0.323 Sum_probs=171.7
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce-----eEEEcCCC------------CCEEEEEECCCC--CeEEEE
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHK------------NWVLCIAWSADG--KHLVSG 168 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~~------------~~v~~l~~s~dg--~~l~s~ 168 (473)
.+-|.++.|...|.+||||..+|.|.++.-..... ...++.|+ ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45688999999999999999999999996532211 11233443 247788898765 466778
Q ss_pred ecCCeEEEeeCCCCcccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccE
Q 011978 169 SKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAV 243 (473)
Q Consensus 169 ~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v 243 (473)
+.|.+|++|.+....... .+..+....++.+...... ....++.+ .+.. .-.+|..-|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~---~~~~~vea--------------~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEG---RHDLEVEA--------------SPRRVYANAHTYHI 167 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeec---cccceeee--------------eeeeeccccceeEe
Confidence 899999999886533211 0011111122222110000 00011100 1111 124688889
Q ss_pred EEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 244 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
.++++++|+..+.++.|=.|.+|+++--
T Consensus 168 NSIS~NsD~Et~lSADdLRINLWnlei~---------------------------------------------------- 195 (433)
T KOG1354|consen 168 NSISVNSDKETFLSADDLRINLWNLEII---------------------------------------------------- 195 (433)
T ss_pred eeeeecCccceEeeccceeeeecccccc----------------------------------------------------
Confidence 9999999987777788889999987521
Q ss_pred ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceE----EE-
Q 011978 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFV----AV- 397 (473)
Q Consensus 324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~----~~- 397 (473)
|+...|-|+.. ..|..-...|++..|+|. .++++..+..|+|++-|++...+. ..
T Consensus 196 --------------d~sFnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 196 --------------DQSFNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred --------------CCceeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 11111112111 112222345777789984 567888889999999998843211 11
Q ss_pred -----------eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeecccccC------------CCE---EEE
Q 011978 398 -----------FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHA------------DEV---FAV 450 (473)
Q Consensus 398 -----------~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~------------~~i---~~l 450 (473)
|.+-...|.++.|+++|+++++-+. -+|++||+. ..+...+.+-|. +.| +.+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1122346899999999999987543 589999994 444444444332 333 458
Q ss_pred EEeeCCCEEEEEeCCCcEEecc
Q 011978 451 DWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 451 ~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|+.++.++.||+.....+++.
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEcCCcceEecccccceEEEec
Confidence 9999999999999999988875
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.7e-12 Score=126.73 Aligned_cols=186 Identities=20% Similarity=0.347 Sum_probs=144.1
Q ss_pred CCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
+..++.+..++.+-+||...+.....+............- ...+..+-
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~--------------------------------~g~s~~~~ 146 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI--------------------------------IGDSAEEL 146 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE--------------------------------EeccCcEE
Confidence 4468888899999999987766554433222111100000 00001123
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEE
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIS 409 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~ 409 (473)
.+++|+--+.+.+|++.....+ ..+.+|.+.+-++.++-||+++++.|+|+++|+|++.+.+... +.-+|+..|+.+.
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEeccccccEEEEeccccCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 5788899999999998743333 3789999999999999999999999999999999999988765 6668999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.|+ .+++++.|-+.++|+.... .+..+.+|. +.|..++..++.-.+++++.|+.+++|+
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eccc--eeEEeccceEEEEEecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9998 9999999999999976543 344777776 4699999999999999999999999995
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=6.7e-14 Score=126.73 Aligned_cols=123 Identities=28% Similarity=0.544 Sum_probs=102.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
.+.|+..+|+|||++||+.|.||.+||+|..+...+...+..-+...|++|||||++|++|+.|.-|.+|.....+.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA- 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA- 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE-
Confidence 3489999999999999999999999999999877665556666789999999999999999999999999998877554
Q ss_pred cCCCcCCcEEEEEeceeccC-------------------------------------------CCCceEEEeeCCCcEEE
Q 011978 188 PLSGHKKWITGISWEPVHLN-------------------------------------------APCRRFVSASKDGDARI 224 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~-------------------------------------------~~~~~~~s~s~dg~i~i 224 (473)
.-.+|+.+|+.++|.|-... ....+|.+.+.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 35799999999999852100 01247888999999999
Q ss_pred EECCCCe
Q 011978 225 WDVSLRK 231 (473)
Q Consensus 225 wd~~~~~ 231 (473)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9987543
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=8.6e-12 Score=106.22 Aligned_cols=224 Identities=13% Similarity=0.204 Sum_probs=140.1
Q ss_pred CCCceEEEeeCCCcEEEEECCCCeEEEEecCcc--ccEEEEEecCCCeEEEeecC------CeEEEEECCCCceeeeeec
Q 011978 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~ 279 (473)
.+..-|+.+.. .-.+||+.+--+......-+. ..+..+-|..+=..+.|+.. +.+.|||-...+++.++..
T Consensus 15 QD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f 93 (346)
T KOG2111|consen 15 QDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF 93 (346)
T ss_pred cCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe
Confidence 34455665554 447888876432211111111 12222223323233344433 5789999777777666543
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-CCCeee-ec
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTR-MT 357 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~ 357 (473)
..+|.++.+..+ +++.. ..+.|++|..... ++.... ..
T Consensus 94 -~~~I~~V~l~r~--------------------------------------riVvv-l~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 94 -NSEIKAVKLRRD--------------------------------------RIVVV-LENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred -ccceeeEEEcCC--------------------------------------eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence 234555554432 23322 3567778865422 111111 11
Q ss_pred CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCc-EEEEECCC
Q 011978 358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDST-LKVWDIRT 433 (473)
Q Consensus 358 ~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-i~iwd~~~ 433 (473)
..+....+++=+.+..+||.-| .-|.|+|-|+...+. ...+.+|.+.|.+++.+-+|..+||+|..|+ |||||..+
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence 1122233333233445666544 458999999876554 4678899999999999999999999999997 89999999
Q ss_pred Cceeeccccc--CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 434 QKLKQDLPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 434 ~~~~~~~~~h--~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+..+++++-. ...|++++||||+.+||.+|.-|++.||.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 9998877542 24799999999999999999999999984
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4.7e-12 Score=110.67 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=145.5
Q ss_pred ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (473)
Q Consensus 241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
..|..+.. .|+.|++|-.+|.+.+|....+.. |..+...++..+.... .
T Consensus 106 ~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~------hss~l~~la~g~g~~~-~----------------------- 154 (412)
T KOG3881|consen 106 KSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDL------HSSKLIKLATGPGLYD-V----------------------- 154 (412)
T ss_pred ccccchhh-cCCEEEEEecCCcEEEEeccCCcc------ccccceeeecCCceee-e-----------------------
Confidence 34444433 367899999999999999875431 1111111211111000 0
Q ss_pred hhcccCCCCceEEEecCC--ceEEEEeCCCCCCCeee------ecC--cccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978 321 YNKIKGNAPERLVSGSDD--FTMFLWEPAVSKQPKTR------MTG--HQQLVNHVYFSPD--GQWVASASFDKSIKLWN 388 (473)
Q Consensus 321 ~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~------~~~--~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd 388 (473)
......+..+++|+.. ..+.+||+....+...- ..+ -+-+++++.|-|. ...||+++.-+.||+||
T Consensus 155 --r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 155 --RQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred --ccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence 0001124567778888 78999998765322110 001 1246788999987 88999999999999999
Q ss_pred CCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 389 GTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 389 ~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
.+.+ +++..|.--..+++++...|+|+++++|..-|.+..||++.++.... +.|-.+.|.++..+|.+++||++|-|+
T Consensus 233 t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 233 TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce
Confidence 9866 46777777788999999999999999999999999999999988766 888889999999999999999999999
Q ss_pred cEEecc
Q 011978 467 VLKLWM 472 (473)
Q Consensus 467 ~i~~w~ 472 (473)
.+||++
T Consensus 313 yvRIhD 318 (412)
T KOG3881|consen 313 YVRIHD 318 (412)
T ss_pred eEEEee
Confidence 999986
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.1e-10 Score=106.92 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=184.7
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
..+.+..+++++|+++|.+ .+..++|++..+...+..... ..+.++.|||-|.+|.+ |..-. .
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T---------~e~~~-----i 96 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLT---------WEPWA-----I 96 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeeccccccccc---------ccccc-----c
Confidence 3446778899999988775 556899999888754333222 26889999999987764 21100 0
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd 267 (473)
....+. ..-.+++|+..++.....+......-++..|+.|..+++--..+.+.+|+
T Consensus 97 ~~~~~~------------------------~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 97 YGPKNA------------------------SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYD 152 (566)
T ss_pred ccCCCC------------------------CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEe
Confidence 000000 02456778877744333333222222678888887666555667899998
Q ss_pred CCCCceeeeeeccCceEEEEEeccc-ceeeeccccCC-------CcccCCHHHHHHHHHh--hhhc-------ccCCCCc
Q 011978 268 TTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFDHT-------GKQYSSPEEMKKAALE--RYNK-------IKGNAPE 330 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~ 330 (473)
...-+.+ .-+.|...+..+.+++. .......+-.. .+.+..+.......+. .+.. .......
T Consensus 153 ~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 153 LGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred cCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 8763322 22345666777777765 21111111110 0112111110000000 0000 0001111
Q ss_pred eEE--EecCCc---------eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE--EECCCcEEEEeCCCCceEEE
Q 011978 331 RLV--SGSDDF---------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS--ASFDKSIKLWNGTTGKFVAV 397 (473)
Q Consensus 331 ~l~--~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--gs~d~~v~lwd~~~~~~~~~ 397 (473)
.|+ +.--|. ++++.+.. ...........+.|.++.|+|+|+-++. |-.=..+.|||++ +.++..
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d 308 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQ--GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD 308 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEec--CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe
Confidence 222 221122 45555543 1111122223578999999999976654 4455679999976 555555
Q ss_pred eeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcE
Q 011978 398 FRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVL 468 (473)
Q Consensus 398 ~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i 468 (473)
+ ..++-+++-|+|.|++|+.++-+ |.|-|||+.+.+.+..+..-. -+-+.|+|||+++++++. |+-+
T Consensus 309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCe
Confidence 5 46788999999999999988864 689999999988877776533 345789999999998875 6778
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
+||+
T Consensus 385 Kiwh 388 (566)
T KOG2315|consen 385 KIWH 388 (566)
T ss_pred EEEE
Confidence 8885
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=9.7e-11 Score=101.56 Aligned_cols=296 Identities=20% Similarity=0.288 Sum_probs=169.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCC----c
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTG----K 183 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~----~ 183 (473)
.+.-++|++.-..+|++..|-+||+||-+...+ ..++ .....|.||+|-|.+ +.|+.|+. +-|.+|....- +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 466789999766788999999999999776333 2332 335679999999965 45666665 56889975421 1
Q ss_pred c---------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978 184 P---------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (473)
Q Consensus 184 ~---------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 252 (473)
. ......+| ..|+.+.|++ ++..+++++- |..|+|||..++.++-........++-+.|+||+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-----dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNE-----DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcC-----CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 1 00112344 6788999876 5678888774 6789999999988776554445678889999998
Q ss_pred eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 253 VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
.++++.-|+..++|...+. ...+-.-+.+ .|....++|.......++......|+.. ..+..+..
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~-------------f~~~~~~~ 317 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLT-------------FDGEDSVF 317 (445)
T ss_pred EEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEe-------------ecCCCccc
Confidence 6889999999999954332 2222222333 6777777776543332222221111100 00000000
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecC---cccceeEEEECCCCcEEEEEECCC--------cEEEEeCCCCceEEEe-e
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDK--------SIKLWNGTTGKFVAVF-R 399 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~lasgs~d~--------~v~lwd~~~~~~~~~~-~ 399 (473)
.-.++.-..+.+-|+.. .....+ -.+.+.+++|.|.|.+||+.-..+ .|.+||.+..-.+... -
T Consensus 318 ~~~~~~k~~lliaDL~e----~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c 393 (445)
T KOG2139|consen 318 LRPQSIKRVLLIADLQE----VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC 393 (445)
T ss_pred cCcccceeeeeeccchh----hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence 00011111111222110 000011 124578899999999999876543 3666776543322111 1
Q ss_pred C--CccCEEEEEEec---CCCEEEEEeCCCcEEEEEC
Q 011978 400 G--HVGPVYQISWSA---DSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 400 ~--h~~~v~~v~~sp---~g~~l~s~s~Dg~i~iwd~ 431 (473)
+ ....-..++|+| +|.+|..+=.-|.+.-|++
T Consensus 394 g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 394 GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 1 011133456665 4556666655666666654
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.8e-12 Score=110.11 Aligned_cols=196 Identities=22% Similarity=0.410 Sum_probs=133.3
Q ss_pred cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC--eEEEeecCCeEEEEECCCC
Q 011978 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG 271 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~ 271 (473)
.+..++|++.-+ .|+++..|-.|++||-.. ++...++ .....|+|++|.|.+ .++.|+. +.|.+|....-
T Consensus 100 dlr~~aWhqH~~-----~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHII-----AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred ceeeEeechhhh-----hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 456788887332 588999999999999876 4433333 345689999998865 3555544 56888865321
Q ss_pred ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
..... ...+.... ..
T Consensus 173 ln~~r-------------------------------------------------------~~~~~s~~----------~~ 187 (445)
T KOG2139|consen 173 LNANR-------------------------------------------------------NIRMMSTH----------HL 187 (445)
T ss_pred ccccc-------------------------------------------------------cccccccc----------ch
Confidence 00000 00000000 00
Q ss_pred CeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 352 ~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
...+..+| ..|++++|.+||..+++++. |..|.|||..++..+....-.-+.++-+.|||||.+|..+.-|+..++|+
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 11222344 57999999999999999986 56899999999987766544567889999999999999999999999996
Q ss_pred CCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 431 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 431 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
.....-.....-..+.|...+|+|+|++|.-+.
T Consensus 267 e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 267 ENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred hcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 544322222222345899999999999875443
No 234
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.48 E-value=1.5e-10 Score=109.89 Aligned_cols=307 Identities=13% Similarity=0.057 Sum_probs=187.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i 199 (473)
+..++.++.++.+.-+|..+++.+....-.......... ++..++.++.+|.++.+|..+|+........ ..+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~-- 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVL-- 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceee--
Confidence 667888889999999999999887765433321122222 4678888999999999999998865432111 1111
Q ss_pred EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEE-----EEEecCCCeEEEeecCCeEEEEECCCCcee
Q 011978 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 274 (473)
-.|.. ...+++.++.++.+..||..+++.+........... +.... ++.++.+..++.+..+|.++|+.+
T Consensus 139 -~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 139 -SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred -cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence 11211 234677778899999999999988776543321111 11111 357788888999999999998876
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
.+...... .. ... . . .+...........+.++.++.++.++.+|...++....
T Consensus 214 W~~~~~~~--------~g------~~~-----~---~-----~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 214 WEQRVALP--------KG------RTE-----L---E-----RLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred eeeccccC--------CC------CCc-----h---h-----hhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 54321100 00 000 0 0 00000000000134577778899999999865543221
Q ss_pred eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.... ...... .++..++.++.||.+..+|..+|+.+.......+ ...+... .+..|++++.||.|+++|..+
T Consensus 267 ~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 267 RDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred eccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 1111 111111 2467788888999999999999987755432111 1122122 466888999999999999999
Q ss_pred CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 434 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++.+..++.+...+..--...+ +.|+.++.||.|..|.
T Consensus 340 G~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 340 GSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEeC
Confidence 9988777655544433222333 4588999999998763
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.4e-11 Score=116.93 Aligned_cols=164 Identities=24% Similarity=0.232 Sum_probs=104.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE-EEecCC--e
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAG--E 173 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-s~~~dg--~ 173 (473)
....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +........++.|+|||+.|+ +.+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 34456667788999999999999998773 3479999998876432 333344456789999999876 445555 5
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CCc--EEEEECCCCeEEEEecCccccEEEEEecC
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
|++||+.+++.. .+..+........|+| ++.+++..+. +|. +.++|+.+++... +..+.......+|++
T Consensus 274 Iy~~d~~~g~~~--~lt~~~~~~~~~~~sp-----DG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~Sp 345 (433)
T PRK04922 274 IYVMDLGSRQLT--RLTNHFGIDTEPTWAP-----DGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSP 345 (433)
T ss_pred EEEEECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECC
Confidence 999999887643 2334444445566665 5566766553 444 5666766654332 211222344678898
Q ss_pred CCe-EEEee-cCC--eEEEEECCCCc
Q 011978 251 DGV-IYTGS-QDC--TIKVWETTQGK 272 (473)
Q Consensus 251 ~~~-l~s~~-~d~--~i~~wd~~~~~ 272 (473)
+|. ++..+ .++ .|.+||+.+++
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCC
Confidence 873 44332 222 57777766543
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.3e-11 Score=118.30 Aligned_cols=207 Identities=17% Similarity=0.126 Sum_probs=127.4
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeec---CCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
..+.++|... .....+..+...+.+.+|+|||. |+..+. ...|.+||+.+++... +...........++|+..
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 4577777643 33334445667888999999983 544442 2469999998886533 222222333445554421
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 375 (473)
..+++.+.++...+|...........+..+........|+|||+.|
T Consensus 253 ----------------------------------~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 253 ----------------------------------TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred ----------------------------------EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEE
Confidence 1234556677666665433222334444455556678999999998
Q ss_pred EEEEC-CCcEEEEe--CCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCEEE
Q 011978 376 ASASF-DKSIKLWN--GTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFA 449 (473)
Q Consensus 376 asgs~-d~~v~lwd--~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i~~ 449 (473)
+..+. ++...+|. ..+++..... .+.......+|||||++|+..+.++ .|++||+.+++... +..+ .....
T Consensus 299 ~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~ 375 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDES 375 (427)
T ss_pred EEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccC
Confidence 87664 45666665 4444432222 1223344678999999999877654 59999998876543 3222 23457
Q ss_pred EEEeeCCCEEEEEeCCC
Q 011978 450 VDWSPDGEKVASGGKDR 466 (473)
Q Consensus 450 l~~s~d~~~l~s~~~D~ 466 (473)
..|+|||+.|+.++.++
T Consensus 376 p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 376 PSFAPNGRYILYATQQG 392 (427)
T ss_pred ceECCCCCEEEEEEecC
Confidence 89999999998877554
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.3e-11 Score=114.21 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=131.8
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee---cCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
..|.+||..... ...+..|...+.+.+|++||. |+..+ .+..|.+||+.+++.. .+......+....++|+..
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 478888875443 344556777899999999984 54433 3468999999887643 3333333344444554421
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce--EEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 373 (473)
..+++.+.++. |++||.... ....+..+.......+|+|||+
T Consensus 259 ----------------------------------~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~ 302 (435)
T PRK05137 259 ----------------------------------KVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGS 302 (435)
T ss_pred ----------------------------------EEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCC
Confidence 12344455544 666776543 2344555555667789999999
Q ss_pred EEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeecccccCCCE
Q 011978 374 WVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEV 447 (473)
Q Consensus 374 ~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~~~~~~h~~~i 447 (473)
.|+..+.. + .|+++|...++..... .+.+.+....|||||++|+..+.+ ..|.+||+..+... .+.. ...+
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~ 379 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLV 379 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCCeEEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCC
Confidence 99887743 3 5888898766544333 334556778999999999887654 35888888655432 2321 2246
Q ss_pred EEEEEeeCCCEEEEEeCC
Q 011978 448 FAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D 465 (473)
....|+|||++|+..+.+
T Consensus 380 ~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCeECCCCCEEEEEEcc
Confidence 678999999998876543
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=5.1e-11 Score=118.41 Aligned_cols=253 Identities=19% Similarity=0.248 Sum_probs=162.5
Q ss_pred eeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCCccc----c--ccCCCcCCcEEEEEeceeccCCCCceEE
Q 011978 142 PMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPS----G--NPLSGHKKWITGISWEPVHLNAPCRRFV 214 (473)
Q Consensus 142 ~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~----~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~ 214 (473)
.+..+..|...|..++.+++. .++++|+.||+|++||.+.-... . ....--...+..+...+ .+..|+
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-----~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-----NGDQFA 1114 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-----CCCeEE
Confidence 344556678888888887755 89999999999999998642111 0 00111223344444332 456899
Q ss_pred EeeCCCcEEEEECCCC--eEE-----EE--ecCccccEEEEEecCC--C-eEEEeecCCeEEEEECCCCceeeeeec--c
Q 011978 215 SASKDGDARIWDVSLR--KCV-----IC--LSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKG--H 280 (473)
Q Consensus 215 s~s~dg~i~iwd~~~~--~~~-----~~--~~~h~~~v~~~~~~~~--~-~l~s~~~d~~i~~wd~~~~~~~~~~~~--~ 280 (473)
.++.||.|++.++... +.. .. .......|.+.++... . .++.+..-+.|..||.++.....+++. .
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998752 111 11 1122223444445422 2 566778888999999988766555433 3
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 360 (473)
.+.|.++++++.+ .-++.|...|.+.+||++.......-...+.
T Consensus 1195 hG~vTSi~idp~~------------------------------------~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWC------------------------------------NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred ccceeEEEecCCc------------------------------------eEEEEecCCceEEEEEeecCceeecccCccc
Confidence 4567777777653 2488999999999999876544443334455
Q ss_pred cceeEEEECCCC---cEEEEEE--CCCcEEEEeCCCCceEEEeeCCc-------------------cCEEEEEEecCCCE
Q 011978 361 QLVNHVYFSPDG---QWVASAS--FDKSIKLWNGTTGKFVAVFRGHV-------------------GPVYQISWSADSRL 416 (473)
Q Consensus 361 ~~v~~v~~sp~g---~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~-------------------~~v~~v~~sp~g~~ 416 (473)
.+++.+..+|-. ...++++ ..+.|.+|++.+|.+..++.... -......+..-+.+
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence 778888887733 4555544 46789999999987666554321 01122233334568
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 011978 417 LLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~~~ 435 (473)
+.+|+.|..|+.||....+
T Consensus 1319 ~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eeecCCccceeeccCCCcc
Confidence 8899999999999987644
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=9.2e-11 Score=108.19 Aligned_cols=208 Identities=23% Similarity=0.334 Sum_probs=143.8
Q ss_pred CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
.|-..++|....||.+|+||..+++....+.. -++...++.|. |..... ..+.. .+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s----------~~k~~--~~~--- 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS----------PMKWL--SLE--- 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc----------hHHHH--hHH---
Confidence 34567899999999999999988765443321 12233344442 111110 00000 000
Q ss_pred CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCC-CeEEEeecCCeEEEEECCC
Q 011978 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ 270 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~ 270 (473)
.. .....+...++-|...|.|.+++...++....+. +|.+.|.++.++.+ +.|++++.|+.+..|+...
T Consensus 62 -~~-------~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 62 -KA-------KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred -HH-------hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 00 0111233467888899999999999988877665 68999999998765 5799999999999999876
Q ss_pred CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (473)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 350 (473)
.+.++. |..
T Consensus 134 ~~~~~~-------------------------------------------------------------------~~~---- 142 (541)
T KOG4547|consen 134 KVIIRI-------------------------------------------------------------------WKE---- 142 (541)
T ss_pred ceeeee-------------------------------------------------------------------ecc----
Confidence 554432 221
Q ss_pred CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-----CCEEE-EEeCCC
Q 011978 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-----SRLLL-SGSKDS 424 (473)
Q Consensus 351 ~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-----g~~l~-s~s~Dg 424 (473)
....+.+++++|||..+++++ +.|++||+++++.+..|.||.++|.+++|--+ |.++. +...+.
T Consensus 143 --------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 143 --------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred --------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 122467789999999999987 57999999999999999999999999999876 55554 445566
Q ss_pred cEEEEECCC
Q 011978 425 TLKVWDIRT 433 (473)
Q Consensus 425 ~i~iwd~~~ 433 (473)
-+.+|-+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677886643
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=2.8e-10 Score=109.78 Aligned_cols=231 Identities=22% Similarity=0.282 Sum_probs=139.3
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceecc
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 206 (473)
..|.++|..+..+ ..+..+...+.+..|+|||++|+.+... ..|++||+.+++... +..+...+..+.|+|
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~sp--- 243 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGAPAFSP--- 243 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccceEECC---
Confidence 3678888764433 3444566678999999999999987654 479999998875432 223344455567766
Q ss_pred CCCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee-cCC--eEEEEECCCCceeeeeec
Q 011978 207 NAPCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKG 279 (473)
Q Consensus 207 ~~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~--~i~~wd~~~~~~~~~~~~ 279 (473)
++..|+ +.+.++ .|.+||+.++... .+..+........|++++. |+..+ .++ .|.++|+.+++..
T Consensus 244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----- 315 (417)
T TIGR02800 244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----- 315 (417)
T ss_pred --CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----
Confidence 445554 444444 5888898876543 3333444445667888773 44333 333 3445554432211
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
.+..+
T Consensus 316 ---------------------------------------------------------------------------~l~~~ 320 (417)
T TIGR02800 316 ---------------------------------------------------------------------------RLTFR 320 (417)
T ss_pred ---------------------------------------------------------------------------EeecC
Confidence 00011
Q ss_pred ccceeEEEECCCCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCC
Q 011978 360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRT 433 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~ 433 (473)
......++|+|+|++|+.++.++ .|.+||+.++.... +... .......|+|||++|+..+.++ .+++.+..
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~- 397 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD- 397 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-
Confidence 12234578999999999988776 78899988765432 3222 2234568999999988877654 35555543
Q ss_pred CceeecccccCCCEEEEEE
Q 011978 434 QKLKQDLPGHADEVFAVDW 452 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~ 452 (473)
++....+..+...+..++|
T Consensus 398 g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 398 GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CceeeECCCCCCCcCCCCC
Confidence 3444445444445555555
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=6.8e-10 Score=100.70 Aligned_cols=304 Identities=19% Similarity=0.285 Sum_probs=185.2
Q ss_pred ccEEEEEECCCCCeEEEEeC---------------CCeEEEEeCCCCceeEEEcCCCCC--EE-EEEECCCCCeEEEEec
Q 011978 109 EAVLSVAFSPDGRQLASGSG---------------DTTVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGSK 170 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~---------------d~~i~iwd~~~~~~~~~~~~~~~~--v~-~l~~s~dg~~l~s~~~ 170 (473)
..|..+.|+|.+++|.+=+. ++.+.+||+.++..++.+.+...+ .+ -+.|+-+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 35888999999999987543 335999999999988877665544 44 67889888877654 3
Q ss_pred CCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEE-----EeeCCCcEEEEECCCCeEEEEecCccccEE
Q 011978 171 AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (473)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~-----s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 244 (473)
...++++++ ++.....+...-. ..|....|+|.... ..|+ ..+.++.+++|.+..+..+.+..-....=.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~---~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH---DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCC---ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 457899987 4443222222222 44666677776422 2233 256778999999987665543221111112
Q ss_pred EEEecCCCe--EEEe---e-------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 245 CVKWGGDGV--IYTG---S-------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 245 ~~~~~~~~~--l~s~---~-------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
.+.|+..|. ++-. . ....+++++++. +.++....-.++|..+++.|...
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~------------------ 287 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSS------------------ 287 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCC------------------
Confidence 355666552 2111 1 124566666653 22222223355666666654311
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeC
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNG 389 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~ 389 (473)
.--+++|-.+-.+.++|++.. .+.......-+.+.|+|.+++++.++.| |.+.+||.
T Consensus 288 ----------------~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 288 ----------------RFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ----------------ceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 001344455556666665432 2233334445668899999999998877 57999998
Q ss_pred CCCce-EEEeeCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 390 TTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 390 ~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
..... +..+.+-. ..-+.|+||++++.+.-. |..|+|||+...+.. ..+.+.|.|.|++.-+.
T Consensus 348 ~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~tts 417 (561)
T COG5354 348 AGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTS 417 (561)
T ss_pred CCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceee
Confidence 75543 33565433 345689999998776532 788999999764332 45667788877776655
Q ss_pred eCCC
Q 011978 463 GKDR 466 (473)
Q Consensus 463 ~~D~ 466 (473)
+.+.
T Consensus 418 Ss~~ 421 (561)
T COG5354 418 SSCP 421 (561)
T ss_pred ccCC
Confidence 5543
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.3e-11 Score=109.70 Aligned_cols=235 Identities=17% Similarity=0.242 Sum_probs=146.8
Q ss_pred CCCCCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw 225 (473)
.+....+.+..+|||++++ +|.+.-.|++||+.+-.. -+.-|. ..+. .|.+. +.+....+---.|++|-+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL---KFERhlDae~V--~feiL--sDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL---KFERHLDAEVV--DFEIL--SDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee---eeeecccccce--eEEEe--ccchhhheEeecCceeeeh
Confidence 4566678899999999875 567788999999875432 122222 2222 22221 1122233334445555443
Q ss_pred ECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCC
Q 011978 226 DVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (473)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 304 (473)
..........++. .-..++++ +..-|+.++....|+-+++++|+.+..+...
T Consensus 122 ak~G~hy~~RIP~---~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~------------------------ 174 (703)
T KOG2321|consen 122 AKYGRHYRTRIPK---FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD------------------------ 174 (703)
T ss_pred hhcCeeeeeecCc---CCccccccCCCccEEEeecCcceEEEEccccccccccccc------------------------
Confidence 2211111111110 11223333 2334677777777877888877665433211
Q ss_pred cccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcE
Q 011978 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v 384 (473)
...++++..++-..+||+|+.||.|
T Consensus 175 -------------------------------------------------------~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 175 -------------------------------------------------------SGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred -------------------------------------------------------cccceeeeecCccceEEecccCceE
Confidence 1346778888888899999999999
Q ss_pred EEEeCCCCceEEEee------CCcc-----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEE
Q 011978 385 KLWNGTTGKFVAVFR------GHVG-----PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDW 452 (473)
Q Consensus 385 ~lwd~~~~~~~~~~~------~h~~-----~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~ 452 (473)
.+||.+....+..+. .|.+ .|+++.|+.+|-.+++|..+|.|.|||+++.+.+.. -.+..-+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999998776555443 2333 499999999999999999999999999998776432 2233458999999
Q ss_pred eeC--CCEEEEEeCCCcEEecc
Q 011978 453 SPD--GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 453 s~d--~~~l~s~~~D~~i~~w~ 472 (473)
.+. ++.++|.+. ..++||+
T Consensus 280 ~~~~~q~~v~S~Dk-~~~kiWd 300 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDK-RILKIWD 300 (703)
T ss_pred cccCCCceEEecch-HHhhhcc
Confidence 766 344444433 5788885
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=1.1e-10 Score=98.58 Aligned_cols=153 Identities=27% Similarity=0.448 Sum_probs=104.1
Q ss_pred EEEEECCCCCeEEEEeC----------CCeEEEEeCCC-CceeEEEc-CCCCCEEEEEECCCCCeEEE--EecCCeEEEe
Q 011978 112 LSVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVS--GSKAGELQCW 177 (473)
Q Consensus 112 ~~~~~sp~~~~lat~s~----------d~~i~iwd~~~-~~~~~~~~-~~~~~v~~l~~s~dg~~l~s--~~~dg~i~iw 177 (473)
..+.|+|+|++|+.-.. -+...+|-++. +.+...+. ...++|.+++|+|+|+.++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999988764322 23455665532 22333332 23457999999999998765 4467899999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC---CCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV- 253 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~- 253 (473)
|.+ ++... .-+...++.+.|+| .++++++++. .|.+.+||.++.+.+.... | ..++.++|+|+|.
T Consensus 89 d~~-~~~i~---~~~~~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 89 DVK-GKKIF---SFGTQPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY 157 (194)
T ss_pred cCc-ccEeE---eecCCCceEEEECC-----CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE
Confidence 996 33322 22345678899988 4567887764 4679999999888887654 3 3478999999994
Q ss_pred EEEee------cCCeEEEEECCCCceeee
Q 011978 254 IYTGS------QDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 254 l~s~~------~d~~i~~wd~~~~~~~~~ 276 (473)
++++. .|+.++||+.. |+.+..
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEe
Confidence 55554 38899999974 555543
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.6e-11 Score=116.97 Aligned_cols=267 Identities=21% Similarity=0.304 Sum_probs=178.2
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE------EcCCC--CCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK------CTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~------~~~~~--~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
+++++++-. ++|.+|++ -.|.+||+..+..+.. +..|. +.+.. .+.+++++...+.+..=+...
T Consensus 9 ~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l-----~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL-----LSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhccccccccccccee-----ccceEEEEEeecceeecchhh
Confidence 444444433 56665543 4799999987654322 22341 11111 234556655544443322111
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE--EEEEe--cCCC-eEEE
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV--TCVKW--GGDG-VIYT 256 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~~--~~~~-~l~s 256 (473)
. ....-..++..- .+.....+++....+..+.+||...+............. .++-+ +.+. ++++
T Consensus 81 ~-----~~~~~s~wi~g~-----~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~ 150 (967)
T KOG0974|consen 81 Q-----IIERFSDWIFGA-----KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS 150 (967)
T ss_pred h-----hhhhcccccccc-----chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe
Confidence 1 111112233331 111234578888899999999987765544333222111 12222 3333 5888
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
|+--+.|.+|+....+.-..+.+|...+..+.++.+ ...+++.|
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------------------------------------g~~i~s~S 194 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------------------------------------GRYIASVS 194 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccC------------------------------------CcEEEEEe
Confidence 999999999997743333368899999888877654 34699999
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCC
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSR 415 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~ 415 (473)
+|.++++|++...+.......+|+..+..+.|+|+ .+++++.|-+.++|+.. ++.+.++.+|.+ .|..++..++..
T Consensus 195 dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 195 DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCce
Confidence 99999999998877766677799999999999998 99999999999999654 555568888865 689999999999
Q ss_pred EEEEEeCCCcEEEEECCC
Q 011978 416 LLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~ 433 (473)
.+++++.|+.+++||...
T Consensus 272 ~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeeccCcchhhhhhhc
Confidence 999999999999999754
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=5e-10 Score=108.20 Aligned_cols=233 Identities=19% Similarity=0.287 Sum_probs=142.0
Q ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (473)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 207 (473)
.|.++|..++.+ ..+..+...+.+..|+|||++|+..+.+ ..|.+||+.+++... +......+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~Sp---- 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSP---- 252 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcCCeEECC----
Confidence 477778776543 3344566788999999999999877654 369999998876432 222223344566766
Q ss_pred CCCceEE-EeeCCC--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCC--eEEEEECCCCceeeeeecc
Q 011978 208 APCRRFV-SASKDG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGH 280 (473)
Q Consensus 208 ~~~~~~~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~--~i~~wd~~~~~~~~~~~~~ 280 (473)
++.+++ +.+.++ .|.+||+.+++.. .+..+........|++||. + +++..++ .|.++|+.+++..+ +.
T Consensus 253 -DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt-- 327 (430)
T PRK00178 253 -DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT-- 327 (430)
T ss_pred -CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee--
Confidence 455665 444455 5778898877643 3444544556678998873 4 3443333 35555554433110 00
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 360 (473)
..+
T Consensus 328 ---------------------------------------------------------------------------~~~-- 330 (430)
T PRK00178 328 ---------------------------------------------------------------------------FVG-- 330 (430)
T ss_pred ---------------------------------------------------------------------------cCC--
Confidence 000
Q ss_pred cceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCC
Q 011978 361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD-S--TLKVWDIRTQ 434 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-g--~i~iwd~~~~ 434 (473)
......+|+|||++|+..+.+ + .|.+||+.+++....... .......|+|||++++..+.+ | .++++++..
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g- 407 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING- 407 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-
Confidence 011235799999999887653 3 478899988765332222 222356899999998877654 2 467777754
Q ss_pred ceeecccccCCCEEEEEEeeC
Q 011978 435 KLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 435 ~~~~~~~~h~~~i~~l~~s~d 455 (473)
...+.+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 333455555556777888863
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=4.7e-11 Score=110.09 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=147.3
Q ss_pred eEEEeecCCeEEEEECCCCceeeeeeccCc---eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+++....||.+++||..+++....+....+ ...+..+. + +.....++...+..... .....
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~----L-----------~~~~s~~k~~~~~~~~~-~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG----L-----------SADYSPMKWLSLEKAKK-ASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE----E-----------EeccchHHHHhHHHHhh-ccCCc
Confidence 577788999999999999887766543211 11111111 0 00001111111111111 11223
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v 408 (473)
..++-|...|.+.+++...++...+.. .+|.+.|+++.++.+-..|.+++.|..+..|+...++.++.++.....+.++
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 457788889999999976554433333 5789999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeC-----CCEEE-EEeCCCcEEecc
Q 011978 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD-----GEKVA-SGGKDRVLKLWM 472 (473)
Q Consensus 409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d-----~~~l~-s~~~D~~i~~w~ 472 (473)
+.+|||..|+++| +.|++||+.+++...++.||.+.|.++.|..+ |+++. +...+.-+.+|.
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 9999999999887 57999999999999999999999999999887 66654 444556666663
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.3e-10 Score=107.16 Aligned_cols=233 Identities=18% Similarity=0.171 Sum_probs=129.6
Q ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-C--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (473)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 207 (473)
.+.++|...... ..+..+...+.+..|||||+.|+..+.+ + .|++||+.+++... +.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt----------------- 258 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VT----------------- 258 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ec-----------------
Confidence 567778765443 2344556778899999999999876543 2 47777776553210 00
Q ss_pred CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCCe--EEEEECCCCceeeeeeccCce
Q 011978 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGHW 283 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~ 283 (473)
.+.+ ......|++||. | ++.+.++. |.++|+.+++.. .+..+...
T Consensus 259 ---------------------------~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~ 307 (448)
T PRK04792 259 ---------------------------SFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAI 307 (448)
T ss_pred ---------------------------CCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCC
Confidence 0001 112346777763 3 34555554 777787766543 33322222
Q ss_pred EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc--eEEEEeCCCCCCCeeeecCccc
Q 011978 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQ 361 (473)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~ 361 (473)
.....++++.. ..+++...++ .++++|..... ..++.....
T Consensus 308 ~~~p~wSpDG~-----------------------------------~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~ 350 (448)
T PRK04792 308 DTEPSWHPDGK-----------------------------------SLIFTSERGGKPQIYRVNLASGK--VSRLTFEGE 350 (448)
T ss_pred ccceEECCCCC-----------------------------------EEEEEECCCCCceEEEEECCCCC--EEEEecCCC
Confidence 33334443321 1122332233 45555654332 222221222
Q ss_pred ceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCc
Q 011978 362 LVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD-S--TLKVWDIRTQK 435 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-g--~i~iwd~~~~~ 435 (473)
.....+|+|||++|+..+.+ + .|.++|+.+++....... .......|+|||++|+..+.+ + .+++++.. ++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~ 427 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR 427 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 23457899999999877653 3 455678877765332222 122345799999988776543 3 36777774 55
Q ss_pred eeecccccCCCEEEEEEee
Q 011978 436 LKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 436 ~~~~~~~h~~~i~~l~~s~ 454 (473)
....+..+.+.+...+|||
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 5566666666677888887
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1e-09 Score=100.69 Aligned_cols=297 Identities=18% Similarity=0.233 Sum_probs=172.2
Q ss_pred cEEEEEECCCCCeEEEE-----eCC-----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 110 AVLSVAFSPDGRQLASG-----SGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~-----s~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
.+.++.|+|-|.+|.|= ..+ ..+++|+++++.....+......-++..|+.|..+ ++--..+.+++|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEec
Confidence 67889999999988752 223 35779999985544333322222258899988653 33333578999998
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEE-----EeeCCCcEEEEECCCCeEEE--EecCc-cccEEEEEecCC
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVI--CLSGH-TLAVTCVKWGGD 251 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~-----s~s~dg~i~iwd~~~~~~~~--~~~~h-~~~v~~~~~~~~ 251 (473)
.+.+.... .-|...|+...++|.... ..++ ..|.-+.++||.......-. ..++. ...-..+.|+.-
T Consensus 154 ~~f~~~~~--kl~~~~i~~f~lSpgp~~---~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 154 GSFKTIQH--KLSVSGITMLSLSPGPEP---PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL 228 (566)
T ss_pred CCccceee--eeeccceeeEEecCCCCC---ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC
Confidence 77543322 224556777777764111 1222 34666789999876221110 00000 011123557654
Q ss_pred C--eEEEe--ecCC---------eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 252 G--VIYTG--SQDC---------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 252 ~--~l~s~--~~d~---------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
| +|+.+ .-|. ++++.+.......-.+ ...++|.++.++++..-.
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF---------------------- 285 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREF---------------------- 285 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEE----------------------
Confidence 4 33333 2332 4556555522221111 125567777776653110
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceE
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFV 395 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~ 395 (473)
-++-|-.--.+-++|++. . ..+.-..+.-+++-|+|.|++|+.++.+ |.|.+||..+.+++
T Consensus 286 ------------~VvyGfMPAkvtifnlr~--~--~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 286 ------------AVVYGFMPAKVTIFNLRG--K--PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ------------EEEEecccceEEEEcCCC--C--EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 022233334555666432 1 1122223455788999999999998875 78999999998888
Q ss_pred EEeeCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978 396 AVFRGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d 455 (473)
..+..-. -+-+.|+|||.+++++.. |+.++||+.....+-.... . .+.+.+.|-|-
T Consensus 350 ~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f-~-sEL~qv~W~P~ 411 (566)
T KOG2315|consen 350 AKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF-K-SELLQVEWRPF 411 (566)
T ss_pred cccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh-h-HhHhheeeeec
Confidence 8887543 355889999999998865 7889999986543322111 1 14677777654
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=1.5e-10 Score=99.81 Aligned_cols=247 Identities=17% Similarity=0.252 Sum_probs=166.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeC-CCCceeEEE-cCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL-NTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~-~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
+...++||.+.|++...-|...-+++.+.|.++|||-- +.++--... ..-..+++++.+.++...|+.|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 34567899999999999999999999999999999943 222211111 1224578999999999999999999999888
Q ss_pred eCCCC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc--EEEEEecCCC
Q 011978 178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA--VTCVKWGGDG 252 (473)
Q Consensus 178 d~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~~~~~ 252 (473)
..... .........|...+.++-|.- ....+++.+.|..+.--=.+.+..+- ++... .+++.+.-.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~lg---~Y~~~~~~t~~~~d~~- 166 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRLG---GYNFETPASALQFDAL- 166 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCccc---ceEeeccCCCCceeeE-
Confidence 65321 111223456788888877653 34577777777655432222221110 00000 001111101
Q ss_pred eEEEeecCCeEEEEEC--CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 253 VIYTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
..+.|...|.|..-.+ ..-..+.++++|...+.++.+.+. +.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~ 210 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QR 210 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------Cc
Confidence 2334545555544332 333566778888888888877653 34
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
.+.+|..|..+.+||+.........+.+|...|..+..-+.-+.+.+++.||.|.+||...
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 6899999999999999877777778889999999998888889999999999999999754
No 250
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=1.4e-11 Score=115.96 Aligned_cols=285 Identities=24% Similarity=0.329 Sum_probs=185.9
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCC--CCCEEEEEECCCC--CeEEEEecCCeEEEeeCCC-
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH--KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQT- 181 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~- 181 (473)
.+++.++.++|.|+-+|.++.-|.. +-|+.. ..+..-+ .| .-.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 3567889999999999998876643 445432 2222211 12 2236667787643 3444444455666888753
Q ss_pred -CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEEEecC-CCeEEEee
Q 011978 182 -GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGG-DGVIYTGS 258 (473)
Q Consensus 182 -~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~l~s~~ 258 (473)
.+.+...+.+|...|+.+.|+|.+. ..+++++.|-.+..||++... .++....-..+-+.+.|+- ++-+++.+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p----dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP----DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC----cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 3344556789999999999998654 479999999999999998754 3344433344556678874 45677778
Q ss_pred cCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 259 QDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 259 ~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
..+.|++||.+.| ..+..+++|...|+.+++... ....+.+++.
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~-----------------------------------~~s~~~s~~~ 222 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF-----------------------------------KYSEIMSSSN 222 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhh-----------------------------------hhhhhcccCC
Confidence 8889999999876 455667777666666554321 1124778899
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc--EEEEEECCCcEEEE---------eCCC-CceEEEeeCCccCE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLW---------NGTT-GKFVAVFRGHVGPV 405 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~--~lasgs~d~~v~lw---------d~~~-~~~~~~~~~h~~~v 405 (473)
|++++.|+-............-...|..-.+-|-|. ++.-.-.+..+.++ +..+ .+.++.|.||...|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 999999997655444333333334455556666433 22222222234343 3332 35789999999988
Q ss_pred EEEEEecC----------CCEEEEEeCCCcEEEEECCC
Q 011978 406 YQISWSAD----------SRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 406 ~~v~~sp~----------g~~l~s~s~Dg~i~iwd~~~ 433 (473)
...-|... .-.|++-|.|.++++|-+..
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 87777532 12699999999999998754
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=3.4e-10 Score=95.57 Aligned_cols=223 Identities=20% Similarity=0.318 Sum_probs=145.2
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCcc---cc---EEEEEecCCC-eEEEeecCCeEEEEECCCCcee--eeeeccCce
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHT---LA---VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHGHW 283 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~---~~---v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~ 283 (473)
++-+-..|.|.++..........+.+-. .. ..++.|+..+ .++++..+|.+.+-+.....+. +.++.|+-.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 4445567778887665444333333321 11 2356676655 4888888888885544433333 356677665
Q ss_pred EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe-eeecCcccc
Q 011978 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQL 362 (473)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~ 362 (473)
.....++. ..++.+.+|++|+.+..||.+..+... ....-|...
T Consensus 168 ~Wta~f~~-----------------------------------~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 168 AWTAKFSD-----------------------------------KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eeeeeccc-----------------------------------CCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 55554432 235689999999999999988544322 224457778
Q ss_pred eeEEEECC-CCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccCEEEEEEecCC--CEEEEEeCCCcEEEEECCCCc---
Q 011978 363 VNHVYFSP-DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQISWSADS--RLLLSGSKDSTLKVWDIRTQK--- 435 (473)
Q Consensus 363 v~~v~~sp-~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~g--~~l~s~s~Dg~i~iwd~~~~~--- 435 (473)
|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.- ..|+++-..| .+|-++..+.
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~ 290 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF 290 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch
Confidence 88888886 688999999999999999984 55554432 34789999999953 3454444444 6777775432
Q ss_pred --eeecccccCCCEEEEEEeeCCCEEEEEe-CCCcEE-ecc
Q 011978 436 --LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLK-LWM 472 (473)
Q Consensus 436 --~~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~-~w~ 472 (473)
.......|.+-.+.-+|......|||++ .|+.++ +|.
T Consensus 291 ~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 291 QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred heeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 2344567777778888854445788865 677755 774
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.5e-11 Score=123.59 Aligned_cols=228 Identities=16% Similarity=0.270 Sum_probs=149.8
Q ss_pred cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (473)
Q Consensus 147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd 226 (473)
+.+-..|.++.=+|-..+-++|+.||.+++|.+..+..+..........|+.+.|+. .++.|..+..||.+.+|.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-----qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-----QGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-----cCCceeeeccCCceeecc
Confidence 344566888888888889999999999999998776654433333335566655443 456788888888888888
Q ss_pred CCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978 227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
+. .+.......|....+...|-. ..+++++
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag------------------------------------------------ 2309 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG-SLLATAG------------------------------------------------ 2309 (2439)
T ss_pred cC-CcceeccccCCccccceeeee-hhhhccc------------------------------------------------
Confidence 76 333334445555544444433 1222221
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l 386 (473)
..++++.+.+||.............|...++++++-|..++|++|+.+|.|++
T Consensus 2310 ---------------------------~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2310 ---------------------------RSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred ---------------------------cCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 01234445555533222222223678888999999999999999999999999
Q ss_pred EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc---cCCC--E--EEEEEeeCCCEE
Q 011978 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADE--V--FAVDWSPDGEKV 459 (473)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---h~~~--i--~~l~~s~d~~~l 459 (473)
||++..++.+.++. +. ...++++|+..|.++||++..-..+.++++ |.+- . ..+-..+ ++.|
T Consensus 2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~-~nri 2431 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ-CNRI 2431 (2439)
T ss_pred eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc-CceE
Confidence 99998887766654 33 456899999999999999987666655543 1110 0 1222222 4567
Q ss_pred EEEeCCCc
Q 011978 460 ASGGKDRV 467 (473)
Q Consensus 460 ~s~~~D~~ 467 (473)
.+++.|++
T Consensus 2432 fsCgad~~ 2439 (2439)
T KOG1064|consen 2432 FSCGADGT 2439 (2439)
T ss_pred EEecCCCC
Confidence 78888764
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.1e-09 Score=95.54 Aligned_cols=316 Identities=17% Similarity=0.202 Sum_probs=176.1
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec----------C-CeEEEeeCC
Q 011978 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------A-GELQCWDPQ 180 (473)
Q Consensus 112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~----------d-g~i~iwd~~ 180 (473)
+-+.|||-|.+|+|--. .-|.+|--++-..+..+ .|. .|.-+.|||+.++|++=+. + ..+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45799999999998644 34888965544333333 344 4888999999999998552 1 469999999
Q ss_pred CCccccccCC--CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE--
Q 011978 181 TGKPSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT-- 256 (473)
Q Consensus 181 ~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s-- 256 (473)
+|........ +....-.-..|+. +..+++ .-...+|.|++......+-.-.-.-..|..-.|+|.+.+++
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~-----DdKy~A-rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSH-----DDKYFA-RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred ccchhcceeccCCCccccceEEecc-----CCceeE-EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 9975432111 1110011123332 334444 33447788998766332211111223456667888764432
Q ss_pred -eecC---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 257 -GSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 257 -~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
-..+ .++.+..+.+++.+++...+...-..+.+..+....+...+...+. .
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~------------------------~- 419 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS------------------------K- 419 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc------------------------c-
Confidence 1111 3455666666666655443332222222222222111111100000 0
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCC----CceEEEeeCCccCE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTT----GKFVAVFRGHVGPV 405 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~----~~~~~~~~~h~~~v 405 (473)
..+.=..+-|+.++....+.... .-...|...+|-|.|..+++-+.. .++.+|-.++ .+++..+.. -..
T Consensus 420 -~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~ 495 (698)
T KOG2314|consen 420 -VKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFA 495 (698)
T ss_pred -ccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--ccc
Confidence 00111123444443332222221 234567889999999988876543 4788887763 223344432 356
Q ss_pred EEEEEecCCCEEEEE---eCCCcEEEEECCCCceee-cccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 406 YQISWSADSRLLLSG---SKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~---s~Dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+.|.|+|.|++++.+ |..|.+..+|..-..... ....|. ..+.+.|.|.|+|+++++.-.
T Consensus 496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 789999999998875 457889999987422222 222343 457789999999999988644
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.8e-09 Score=101.82 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=136.0
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEE---EEecC--CeEEEeeCCCCccccccCCCcCCcEEEEEecee
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV---SGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~---s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 204 (473)
..|.+.|..++.+. .++.....+.+-.|||||+.++ +...+ ..|.+.++.+++... +...........|+|
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP- 240 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP- 240 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence 35777777665443 3444455567889999998632 33333 357778887775322 222233334456666
Q ss_pred ccCCCCceEEEeeC-CC----cEEEEECCCC---eEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCcee
Q 011978 205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 205 ~~~~~~~~~~s~s~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~ 274 (473)
++.+++..+. +| .+.+|++..+ .......++.......+|++||. |+ +...+|...+|.+.-.
T Consensus 241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~--- 313 (428)
T PRK01029 241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID--- 313 (428)
T ss_pred ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc---
Confidence 5666665442 22 3444676542 22222223223345678898874 44 3334554444422100
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
.......
T Consensus 314 -------------------------------------------------------------------------~~g~~~~ 320 (428)
T PRK01029 314 -------------------------------------------------------------------------PEGQSPR 320 (428)
T ss_pred -------------------------------------------------------------------------ccccceE
Confidence 0000001
Q ss_pred eecCcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeC---CCcEEE
Q 011978 355 RMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK---DSTLKV 428 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---Dg~i~i 428 (473)
.+..+...+...+|||||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||++|+..+. +..|++
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 111112234567899999999877653 368999999887654433 2345678999999998875443 346888
Q ss_pred EECCCCceeecccccCCCEEEEEEeeCC
Q 011978 429 WDIRTQKLKQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 429 wd~~~~~~~~~~~~h~~~i~~l~~s~d~ 456 (473)
+|+..++..... .....+...+|+|-.
T Consensus 400 vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 400 ISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EECCCCCEEEee-cCCCcccCceecCCC
Confidence 999877654332 234456677888753
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=6e-09 Score=98.93 Aligned_cols=260 Identities=15% Similarity=0.106 Sum_probs=157.4
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEE-EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 197 (473)
++..++.++.++.+..+|..+++.+....... .+.+ ... .+..++.++.+|.++.||.++|+....... ......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCcee
Confidence 46778888899999999999988776544222 2221 111 245777888899999999999875432111 000000
Q ss_pred EE-EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc-c---c------cEE-EEEecCCCeEEEeecCCeEEE
Q 011978 198 GI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-T---L------AVT-CVKWGGDGVIYTGSQDCTIKV 265 (473)
Q Consensus 198 ~i-~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h-~---~------~v~-~~~~~~~~~l~s~~~d~~i~~ 265 (473)
.. .-.|.. ....++.+..++.+..+|..+++.+....-. . . .+. +..+ .++.++.++.+|.+..
T Consensus 180 ~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 180 LRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAA 255 (377)
T ss_pred ecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEE
Confidence 00 001111 1235677888899999999988776543210 0 0 010 1111 2567888899999999
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
+|..+|+.+....... ..... .....++.++.++.+..+|
T Consensus 256 ~d~~tG~~~W~~~~~~--~~~p~--------------------------------------~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 256 LDLRSGRVLWKRDASS--YQGPA--------------------------------------VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred EECCCCcEEEeeccCC--ccCce--------------------------------------EeCCEEEEECCCCeEEEEE
Confidence 9999998765443110 00000 0134577778899999998
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
....+..............+... .+..|++++.+|.++++|..+|+.+..++.+...+..--...++ .|+.++.||.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~ 372 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGD 372 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCce
Confidence 76543222110100111111122 46788999999999999999999998887665443332222233 5778889999
Q ss_pred EEEE
Q 011978 426 LKVW 429 (473)
Q Consensus 426 i~iw 429 (473)
|+.|
T Consensus 373 l~~~ 376 (377)
T TIGR03300 373 LYAF 376 (377)
T ss_pred EEEe
Confidence 8875
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=3.8e-09 Score=102.11 Aligned_cols=162 Identities=23% Similarity=0.224 Sum_probs=97.9
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCC--eE
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAG--EL 174 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg--~i 174 (473)
...+..+...+...+|+|||++|+..+.+ ..|.+||+.++.... +....+.+....|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34455677889999999999999877643 468999998875432 3333344567899999998874 44454 68
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC-CC--cEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (473)
++||+.+++.. .+..+........|+| ++..++..+. ++ .|.++|+.+++....... ........|+++
T Consensus 270 y~~d~~~~~~~--~lt~~~~~~~~~~~sp-----Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spd 341 (430)
T PRK00178 270 YVMDLASRQLS--RVTNHPAIDTEPFWGK-----DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSAD 341 (430)
T ss_pred EEEECCCCCeE--EcccCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCC
Confidence 88899877543 2333444444556665 4555654443 33 566777776654322111 122234567877
Q ss_pred Ce-EEEee-cCC--eEEEEECCCC
Q 011978 252 GV-IYTGS-QDC--TIKVWETTQG 271 (473)
Q Consensus 252 ~~-l~s~~-~d~--~i~~wd~~~~ 271 (473)
+. ++..+ .++ .|.+||+.++
T Consensus 342 g~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 342 GKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCEEEEEEccCCceEEEEEECCCC
Confidence 63 33322 233 3555665544
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=2.2e-09 Score=103.57 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=128.1
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 220 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
..|.++|..... ...+..+...+.+..|++||. ++.+..+ ..|++||+.+++.... ..+...+..+.++++..
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~- 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS- 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC-
Confidence 357777775433 233444556688889999984 4444332 5799999988754332 22222233344444321
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC--ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 373 (473)
..+++.+.+ ..+++|++.... ...+..+.......+|+|||+
T Consensus 247 ----------------------------------~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~ 290 (417)
T TIGR02800 247 ----------------------------------KLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGK 290 (417)
T ss_pred ----------------------------------EEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCC
Confidence 122333333 357888865432 233334444455678999999
Q ss_pred EEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCE
Q 011978 374 WVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEV 447 (473)
Q Consensus 374 ~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i 447 (473)
.|+..+.. + .|+++|..+++.. .+..+...+..+.|+|+|++|+.++.++ .|.+||+.++... .+... ...
T Consensus 291 ~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~ 367 (417)
T TIGR02800 291 SIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLD 367 (417)
T ss_pred EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCC
Confidence 98877653 3 5888888777643 3333455677889999999999888776 7899999875442 23222 223
Q ss_pred EEEEEeeCCCEEEEEeCCC
Q 011978 448 FAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~ 466 (473)
....|+|||++|+.++.++
T Consensus 368 ~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCceECCCCCEEEEEEeCC
Confidence 4568999999998877654
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.4e-11 Score=109.93 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=150.7
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
.+.||+..|..++--.+..-+++++.|++|++|.++. ..+.+..+.|+.+|.++.|-.+-++++++ ||.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 4679999999988777778899999999999999853 23566778999999999999888887765 78999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEE
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (473)
+||.--|+...+.. |.| +. +-...|.|+.--....++
T Consensus 808 lWDPFigr~Laq~~-----------dap------------------------k~--------~a~~~ikcl~nv~~~ili 844 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQME-----------DAP------------------------KE--------GAGGNIKCLENVDRHILI 844 (1034)
T ss_pred eecccccchhHhhh-----------cCc------------------------cc--------CCCceeEecccCcchhee
Confidence 99986665433211 111 00 111123333211122344
Q ss_pred E-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 256 T-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 256 s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
+ ++...+++++|.+.+.....++.-
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVc------------------------------------------------------ 870 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVC------------------------------------------------------ 870 (1034)
T ss_pred eeccchhhheeeecccccceeeEEec------------------------------------------------------
Confidence 4 477889999998876654433210
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
...+....++++++.|.|+.+|.|-..|.|.+.|.++|+.+..++.-..-...++ .|..
T Consensus 871 --------------------na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsd 929 (1034)
T KOG4190|consen 871 --------------------NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSD 929 (1034)
T ss_pred --------------------cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cchh
Confidence 0112234578899999999999999999999999999998888776554444454 4667
Q ss_pred CEEEEEeCCCcEEE-EECCCCcee
Q 011978 415 RLLLSGSKDSTLKV-WDIRTQKLK 437 (473)
Q Consensus 415 ~~l~s~s~Dg~i~i-wd~~~~~~~ 437 (473)
+.|+....|.++-+ |..-.+...
T Consensus 930 q~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCeee
Confidence 78888888888888 877665543
No 259
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=99.25 E-value=3.3e-11 Score=80.45 Aligned_cols=62 Identities=34% Similarity=0.599 Sum_probs=58.0
Q ss_pred eEEEEEECCCC--CcCCCeeeecCCCCHHHHHHHHHHHh-cCCCCcceEEEecCeeecccHHhHH
Q 011978 10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL 71 (473)
Q Consensus 10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (473)
||+|.|.++++ .+++.|+.+|.++++.+|+.++|+|+ +.+++.||+|++++..++.+|++++
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l 65 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL 65 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence 68999998877 89999999999999999999999999 8889999999999999999998864
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=1.7e-08 Score=91.90 Aligned_cols=323 Identities=16% Similarity=0.207 Sum_probs=183.8
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--------------
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-------------- 172 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg-------------- 172 (473)
-.-++..+.+||.|.+|++... ..|.+|.......+..+. | ..|.-+.|||++++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3457888999999999987543 468999887766544443 3 3489999999999999865443
Q ss_pred -eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecC-ccccEEEEEec
Q 011978 173 -ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSG-HTLAVTCVKWG 249 (473)
Q Consensus 173 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~v~~~~~~ 249 (473)
.+.+||..+|..+.. +..-..+ .+.|.-..++.+..+.+-. ....+.|+++ +.... .-+.. ....|..-.|+
T Consensus 108 n~~~vwd~~sg~iv~s-f~~~~q~--~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 108 NNVFVWDIASGMIVFS-FNGISQP--YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred CceeEEeccCceeEee-ccccCCc--ccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEec
Confidence 489999988864321 1111111 1112111111111122111 2356788886 32211 11100 01345556666
Q ss_pred CCC---eEE-----EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeec-cccC--CCcccCCHHHHHHHHH
Q 011978 250 GDG---VIY-----TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG-AFDH--TGKQYSSPEEMKKAAL 318 (473)
Q Consensus 250 ~~~---~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ 318 (473)
|.+ .|+ ....++++++|.+..++.+.+...-...-..+.+.+....... ...+ ..+.+
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy----------- 251 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY----------- 251 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce-----------
Confidence 653 222 2567888999988866655432111100011111111110000 0000 00000
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceEE
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVA 396 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~~ 396 (473)
-....++++++.....+.. ..-.+.|...+|.|.++.+++.+ .+..+.++|++.. ...
T Consensus 252 -----------------fgesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 252 -----------------FGESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred -----------------eccceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc-eEE
Confidence 0123456666542222222 14467899999999988777655 6778999998765 333
Q ss_pred EeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEe------CCC
Q 011978 397 VFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGG------KDR 466 (473)
Q Consensus 397 ~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~------~D~ 466 (473)
.+ ....=+.+.|||.+++++.++-| |.|.+||....... ..+.+-. -.-+.|+||++++-+.. .|.
T Consensus 312 ~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn 387 (561)
T COG5354 312 YF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDN 387 (561)
T ss_pred ec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCc
Confidence 33 34455678899999999998876 57999998765443 3554433 34568999999987654 367
Q ss_pred cEEecc
Q 011978 467 VLKLWM 472 (473)
Q Consensus 467 ~i~~w~ 472 (473)
.++||+
T Consensus 388 ~i~l~~ 393 (561)
T COG5354 388 SIKLWD 393 (561)
T ss_pred ceEEEE
Confidence 888886
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.8e-09 Score=98.04 Aligned_cols=295 Identities=16% Similarity=0.270 Sum_probs=183.0
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee---------------EEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---------------FKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~---------------~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
....|++|+....++|.|+.||.+++-.+.+...- ..+.+|...|..+.|+.+.+.|-+...+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 45789999999999999999999999987654211 235689999999999999999999999999
Q ss_pred EEEeeCCCCccccccCCC-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecCccccEEEEEecCC
Q 011978 174 LQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~ 251 (473)
|.+|-+-.|......+.. .+..|.+++|+. ++.++...-.||.|.+=.+..++.- +.++|. -...+.|++|
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D 167 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSED 167 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeeccc
Confidence 999998877654333333 344567888865 4556665556665554443322110 112221 1234678888
Q ss_pred C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce--eeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA--LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 252 ~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
. .++.+-..|.+.++|.+..- ...++. ...|+.-....++. +....+.. + ++.... ..
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF-~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~-g---------------~~~~v~-pd 228 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNF-ERKLEK-DCEVNGTGIFSNFPTKIAEIEWNT-G---------------PYQPVP-PD 228 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccH-HHhhhh-ceEEeeeeeecCCCccccceeecc-C---------------ccccCC-CC
Confidence 6 35566777999999865431 111110 00011111111100 00000000 0 000000 11
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC---------cEEEEeCCCCceEEEee
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---------SIKLWNGTTGKFVAVFR 399 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~---------~v~lwd~~~~~~~~~~~ 399 (473)
...++.+-..|.+.+-.-.+...|.....+ -.+..+.|+++|..||.++.|. .|.++.. -|+.+.+++
T Consensus 229 rP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk 305 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK 305 (1189)
T ss_pred CCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe
Confidence 235788888888887765444444444333 4577889999999999998653 4555543 366677777
Q ss_pred CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 400 ~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.....|++++|-..|-.+|.+ -|+.|++=+++.
T Consensus 306 vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred cCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 777789999998777776655 467777666654
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=7.6e-11 Score=121.21 Aligned_cols=162 Identities=17% Similarity=0.276 Sum_probs=124.8
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
+.-|-..|.++.-+|...+.+||+.||.|++|.+..++++.... .-...|+.+.|+.+|..+..+..||.+.+|.....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 34456778888889999999999999999999998887765543 22378999999999999999999999999987622
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEe---eCCCcEEEEECCC--C-eEEEEecCccccEEEEEecCCC-eEE
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---SKDGDARIWDVSL--R-KCVICLSGHTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~---s~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~-~l~ 255 (473)
....-..|++......|.. ..++++ +.++.+.+||.-. . .++. ..|...++++++.|.. .++
T Consensus 2284 --~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2284 --PYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred --ceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEE
Confidence 2233466777777776654 234443 4578999999643 2 2333 6899999999999876 588
Q ss_pred EeecCCeEEEEECCCCceeee
Q 011978 256 TGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~ 276 (473)
+|+.+|.|++||++..++++.
T Consensus 2353 sggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHH
Confidence 999999999999987665543
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.8e-09 Score=100.51 Aligned_cols=140 Identities=26% Similarity=0.277 Sum_probs=86.6
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCCe--EEE
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGE--LQC 176 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~--i~i 176 (473)
.+..+...+.+.+|+|||++|+..+.+ ..|.+||+.+++... +..........+|+|||+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678899999999999876542 368889998776432 2222333457899999998875 455664 788
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCC--cEEEEECCCCeEEEE-ecCccccEEEEEecCCC
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDG--DARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG 252 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg--~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~ 252 (473)
+|+.+++.. .+..+........|+| ++..++..+ .++ .|.++|+.+++.... ..++ ......|++||
T Consensus 291 ~dl~tg~~~--~lt~~~~~~~~p~wSp-----DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG 361 (448)
T PRK04792 291 VDIATKALT--RITRHRAIDTEPSWHP-----DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDG 361 (448)
T ss_pred EECCCCCeE--ECccCCCCccceEECC-----CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCC
Confidence 888877543 2333444445566766 445555443 344 455667766654332 2222 22346788887
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-09 Score=93.13 Aligned_cols=285 Identities=18% Similarity=0.303 Sum_probs=163.2
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-e----eEEEcCCCC------------CEEEEEECCCC--CeEEE
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-P----MFKCTGHKN------------WVLCIAWSADG--KHLVS 167 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-~----~~~~~~~~~------------~v~~l~~s~dg--~~l~s 167 (473)
..+.|+++.|...|.+||+|...|.|.+|.-+... + ...+++|+. .|..+.|-.++ .+++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999888999999754322 1 122445532 36677776543 36777
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEE--ee-CCCcEEEEECCCCeEEEEecCccccEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS--AS-KDGDARIWDVSLRKCVICLSGHTLAVT 244 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s--~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~ 244 (473)
.+.|.+|++|.+............-...+....--|.. ....+.- .+ .|..|... .+...-..|..-|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~---s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiN 176 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT---STKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHIN 176 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcC---CHHHhhcccccccceEEEec-----cceeccccceeEee
Confidence 78899999998765421100000000000000000000 0000000 00 00000000 01111245777788
Q ss_pred EEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (473)
Q Consensus 245 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
+++++.|...+.++.|=.|.+|++.-.
T Consensus 177 SiS~NsD~et~lSaDdLrINLWnl~i~----------------------------------------------------- 203 (460)
T COG5170 177 SISFNSDKETLLSADDLRINLWNLEII----------------------------------------------------- 203 (460)
T ss_pred eeeecCchheeeeccceeeeecccccc-----------------------------------------------------
Confidence 899988877666777888889976421
Q ss_pred cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCce------E--
Q 011978 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF------V-- 395 (473)
Q Consensus 325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~------~-- 395 (473)
|+...|-|+.. ..+..-...|++..|+|. ...+...+..|.|++-|++...+ +
T Consensus 204 -------------D~sFnIVDiKP-----~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 204 -------------DGSFNIVDIKP-----HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred -------------CCceEEEeccC-----ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 11111222111 111112234677788885 45667777889999999874321 0
Q ss_pred --------EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC-Cceeeccccc------------CCCEE---EEE
Q 011978 396 --------AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGH------------ADEVF---AVD 451 (473)
Q Consensus 396 --------~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~h------------~~~i~---~l~ 451 (473)
.-+.+-...|.++.|+++|+++++-+. -+|+|||++. ..++.+++-| .+.|+ .+.
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 112223457899999999999987653 5799999975 3445555433 23343 478
Q ss_pred EeeCCCEEEEEeCCCcEEec
Q 011978 452 WSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 452 ~s~d~~~l~s~~~D~~i~~w 471 (473)
||.|.+.+.+|+..+..-++
T Consensus 345 fSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ecCCcccccccccccceeee
Confidence 99999999998877654443
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.9e-08 Score=96.18 Aligned_cols=225 Identities=19% Similarity=0.154 Sum_probs=128.5
Q ss_pred cccCCcccEEEEEECCCCCeEE---EEeCC--CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec-CC----
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLA---SGSGD--TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AG---- 172 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~la---t~s~d--~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg---- 172 (473)
.+......+.+.+|||||+.++ +...+ ..|.+.++.+++... +....+......|||||++|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 3444455677889999998632 33333 467777888765432 2333444567899999999886553 23
Q ss_pred eEEEeeCCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEE--CCC-CeEEEEecCccccEEEE
Q 011978 173 ELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWD--VSL-RKCVICLSGHTLAVTCV 246 (473)
Q Consensus 173 ~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd--~~~-~~~~~~~~~h~~~v~~~ 246 (473)
.+.+|++..+. .......++........|+| ++.+++..+ .+|...+|. +.. +.....+..+...+...
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-----DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-----DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECC-----CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 34447766531 11112222222334556665 566666554 466656664 332 22233344444556778
Q ss_pred EecCCCe-EEEe-ecC--CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 247 KWGGDGV-IYTG-SQD--CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 247 ~~~~~~~-l~s~-~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.|+|||. |+.. ..+ ..|.+||+.+++... +
T Consensus 333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L--------------------------------------------- 366 (428)
T PRK01029 333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-L--------------------------------------------- 366 (428)
T ss_pred eECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-c---------------------------------------------
Confidence 8999884 4433 322 356777766553211 0
Q ss_pred cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---CCcEEEEeCCCCceEEEee
Q 011978 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFR 399 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---d~~v~lwd~~~~~~~~~~~ 399 (473)
......+....|+|||++|+..+. ...|.++|+..++......
T Consensus 367 ----------------------------------t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 367 ----------------------------------TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ----------------------------------cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 000112345689999998886543 3468888998877654443
Q ss_pred CCccCEEEEEEecCC
Q 011978 400 GHVGPVYQISWSADS 414 (473)
Q Consensus 400 ~h~~~v~~v~~sp~g 414 (473)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556778888753
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=7.3e-09 Score=87.72 Aligned_cols=259 Identities=17% Similarity=0.267 Sum_probs=159.0
Q ss_pred CCeEEEEeCCCCcee----EEEcCCCCCEEEEEECC---CCC-eEEEEecCCeEEEeeCCCCcccc--ccCCCcCCcE--
Q 011978 129 DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSA---DGK-HLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWI-- 196 (473)
Q Consensus 129 d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~---dg~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v-- 196 (473)
.|.+.+|+++..+.. ...+.| ..+..|.|.- +|. .++-+..+|.|.++......... ..+..-.-.+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 356777776543221 112222 3455566652 444 45556677889888764332111 1111111111
Q ss_pred -EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--EEecCccccEEEEEecCC--CeEEEeecCCeEEEEECC-C
Q 011978 197 -TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETT-Q 270 (473)
Q Consensus 197 -~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~-~ 270 (473)
-++.|++ .+..++++-.+|.+.+-+....... +..++|..+++-+.|+.. +++++|+.|+.+.-||++ .
T Consensus 124 ~lslD~~~-----~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDIST-----SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeec-----cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 2344444 3456778888888885555444333 367889999998888743 478999999999999998 4
Q ss_pred Cceeee-eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 271 GKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 271 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
++.+.+ .+.|...|.++.-++. .+..+++|+.|..+++||.++.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~-----------------------------------~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPP-----------------------------------KPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeecceeeecceEEEecCCC-----------------------------------CCceEEEeccccceeeeehhcc
Confidence 444443 4556666666654432 2457999999999999998866
Q ss_pred CCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEeCCCC--c---eEEEeeCCccCEEEEEEecCCCEEEEEe-
Q 011978 350 KQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--K---FVAVFRGHVGPVYQISWSADSRLLLSGS- 421 (473)
Q Consensus 350 ~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~--~---~~~~~~~h~~~v~~v~~sp~g~~l~s~s- 421 (473)
.++..... -.+.|+.+..+|. +++|+++-..| .+|-+...+ + ....++.|.+-+..-.|.....+||++|
T Consensus 244 ~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF 321 (339)
T KOG0280|consen 244 GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF 321 (339)
T ss_pred cCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeec
Confidence 65544322 2367999999984 44555555544 566665543 2 3445667777777777755556788876
Q ss_pred CCCcEE-EEE
Q 011978 422 KDSTLK-VWD 430 (473)
Q Consensus 422 ~Dg~i~-iwd 430 (473)
.|+.++ +|-
T Consensus 322 YDk~~~~~Wl 331 (339)
T KOG0280|consen 322 YDKKIRQLWL 331 (339)
T ss_pred cccceeeeee
Confidence 466644 663
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=7.8e-08 Score=99.54 Aligned_cols=312 Identities=17% Similarity=0.229 Sum_probs=177.9
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEE----eCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iw----d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
..+.|.++.+-++...++.+..+|.|.+. +..+... -....-+.+|.+++||||+..|+..+.++++.+-+. +-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cc
Confidence 45789999999999999999999999998 5444321 111233568999999999999999999998877542 11
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--------------EEecCccccEEEEEe
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--------------ICLSGHTLAVTCVKW 248 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--------------~~~~~h~~~v~~~~~ 248 (473)
.. +......+..+ ....+++.|+..+=.-+.-+.++.. ..+. +...-..++|
T Consensus 152 d~-----------i~E~~l~~~~~--~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW 217 (928)
T PF04762_consen 152 DP-----------ISEVPLDSDDF--GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW 217 (928)
T ss_pred eE-----------EEEeecCcccc--CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence 11 11121122111 1124455444332211111111110 0111 2334567899
Q ss_pred cCCCeE-EEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 249 GGDGVI-YTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 249 ~~~~~l-~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.+||.+ ++.+- -+.+|+|+-+ |.+....+.-.+.-..+++.|.+.
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~--------------------------- 269 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN--------------------------- 269 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------------------------
Confidence 999954 33332 2578999854 554333222111112233333322
Q ss_pred hcccCCCCceEEEec---CCceEEEEeCCCCCCCeeeec--CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-
Q 011978 322 NKIKGNAPERLVSGS---DDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV- 395 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~- 395 (473)
.+++.. ....|.+|+....+.....+. .....|..++|++|+..||..-.|. |++|-..+-...
T Consensus 270 ---------lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 270 ---------LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred ---------EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 222221 124566666433222222222 3455789999999999999987665 999987664422
Q ss_pred -EEeeC-CccCEEEEEEecC-CCEEEEEeCCCcEEEEEC----CCC----------------c-e-eecc-----c----
Q 011978 396 -AVFRG-HVGPVYQISWSAD-SRLLLSGSKDSTLKVWDI----RTQ----------------K-L-KQDL-----P---- 441 (473)
Q Consensus 396 -~~~~~-h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~----~~~----------------~-~-~~~~-----~---- 441 (473)
+.+.- ....+..+.|+|. ...|.....+|.+..++. ..+ . . +..+ +
T Consensus 340 Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs 419 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS 419 (928)
T ss_pred EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh
Confidence 22221 2233455899984 445666666666655442 111 0 0 0111 0
Q ss_pred ----ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 442 ----GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 442 ----~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.-...|.+++|++++..++....|+.|.+|.
T Consensus 420 ~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 420 SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1235789999999998899999999999885
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=5.2e-07 Score=82.30 Aligned_cols=269 Identities=13% Similarity=0.072 Sum_probs=152.2
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec----------CCeEEEeeCCCCccccccCCCcC------
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHK------ 193 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~------ 193 (473)
++|.+.|..+.+.+..+..-..+-. + +||||+.|+.+.. +..|.+||..+.+.......+-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999877666653333322 4 9999999987765 68999999999876543322111
Q ss_pred CcEEEEEeceeccCCCCceEEEee-C-CCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC-C
Q 011978 194 KWITGISWEPVHLNAPCRRFVSAS-K-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-Q 270 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s-~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~ 270 (473)
.....+.+ ++++++++... . +..|-+.|+.+++.+..+.-.. ...-.. .++.....-+.||......+. +
T Consensus 105 ~~~~~~~l-----s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSL-----TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEE-----CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEeecCceEEEEecCC
Confidence 01112223 33555565544 3 6889999999988877654211 111111 111222223344433332221 1
Q ss_pred CceeeeeeccCceEEEEE-ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 271 GKLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
|+.. ..... +..+.. ..+..+ .........+..... |++.+.|+...
T Consensus 178 g~~~---------~~~~~vf~~~~~----------~v~~rP------------~~~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 178 GNPK---------IKPTEVFHPEDE----------YLINHP------------AYSNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred CceE---------EeeeeeecCCcc----------ccccCC------------ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence 2110 00000 000000 000000 000001223333333 88888885332
Q ss_pred CC----Ceeee-------cCcccceeEEEECCCCcEEEEEEC----------CCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978 350 KQ----PKTRM-------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 350 ~~----~~~~~-------~~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd~~~~~~~~~~~~h~~~v~~v 408 (473)
.. +.... .-......-++++|+++.+..... .+.|.++|..+++.+..+.- ...+..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~i 304 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSI 304 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeE
Confidence 11 11111 012333445999999998887431 24799999999999888763 3478999
Q ss_pred EEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978 409 SWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 409 ~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~ 440 (473)
+++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 305 avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999 877666 5788999999999888776
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=1.8e-07 Score=84.65 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=91.0
Q ss_pred cCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 357 TGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
.++...|.-..+..+++-++.|..|| .+-++|..+++. ..+...-+.|.++..+|||++++.+.....+.+.|+.+++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 34556677777888888899999998 899999987764 4556677899999999999999999888899999999988
Q ss_pred eeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 436 LKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 436 ~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
....-+...+-|+.++|||+++++|-+=.+|
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 7655555667899999999999999887765
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=4.6e-10 Score=106.04 Aligned_cols=283 Identities=17% Similarity=0.316 Sum_probs=174.3
Q ss_pred CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC-ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
.+++..+..+|.|+-++.++.-|- .+-|+... ........-..-.|-.+.|+|.. ...+.+.........+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~---a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHP---AKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCC---CCceeEEecCcchhhhhhhh
Confidence 456778889999998888877654 34454432 11111000011123445566532 23455666666777889875
Q ss_pred C---CeEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccC
Q 011978 229 L---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 229 ~---~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
. ...-..+.||..+|+.+.|++.. .+++++-|-.+..||+++-.. +..+..-...-..+.++
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn------------ 167 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN------------ 167 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec------------
Confidence 3 34445678999999999998765 688999999999999886432 11111000000000000
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFD 381 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d 381 (473)
| ..+ .+...+..+.+++||.+.+..+...+.+|...|+.++|.. ....+.+.+.|
T Consensus 168 ----y-------------------k~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 168 ----Y-------------------KDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ----c-------------------cCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 0 011 2445566778999999988888888888999999998875 34568889999
Q ss_pred CcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCC--EEEEEeCCCcEE---------EEECCC-CceeecccccCCCEE
Q 011978 382 KSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSR--LLLSGSKDSTLK---------VWDIRT-QKLKQDLPGHADEVF 448 (473)
Q Consensus 382 ~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg~i~---------iwd~~~-~~~~~~~~~h~~~i~ 448 (473)
++|++||........ .......+|..-.|-|-|. ++.---.+..+- .|+..+ .+.+.++.||.+.|.
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 999999987543211 1111234566666666332 221111122333 344333 345778999999887
Q ss_pred EEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978 449 AVDWSPDG----------EKVASGGKDRVLKLWM 472 (473)
Q Consensus 449 ~l~~s~d~----------~~l~s~~~D~~i~~w~ 472 (473)
..-|-..+ -.|++-+.|.++|+|-
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 76664332 2789999999999994
No 271
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=5.4e-07 Score=84.10 Aligned_cols=229 Identities=16% Similarity=0.255 Sum_probs=130.5
Q ss_pred CCceEEEeeC----CCcEEEEECCCC--eE--EEEecCccccEEEEEecCCC-eEEEe-ecCCeEEEEECCC-Cceeeee
Q 011978 209 PCRRFVSASK----DGDARIWDVSLR--KC--VICLSGHTLAVTCVKWGGDG-VIYTG-SQDCTIKVWETTQ-GKLIREL 277 (473)
Q Consensus 209 ~~~~~~s~s~----dg~i~iwd~~~~--~~--~~~~~~h~~~v~~~~~~~~~-~l~s~-~~d~~i~~wd~~~-~~~~~~~ 277 (473)
+..++.+... ++.|..|++... +. +............+++++++ .++++ -.+|++.++++.. |.+....
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 4455655544 578888887653 32 22222122234457788877 35554 4689999999876 4332221
Q ss_pred --ecc-----------CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 278 --KGH-----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 278 --~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
..+ ....-.+.++|+. ...+++.-....|.+|
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-----------------------------------~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDG-----------------------------------RFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTS-----------------------------------SEEEEEETTTTEEEEE
T ss_pred eecccCCCCCcccccccccceeEEECCCC-----------------------------------CEEEEEecCCCEEEEE
Confidence 100 0011122222211 1123333444567777
Q ss_pred eCCCCCCCee----eecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC--CCce--EEEeeC----C--ccCEEEEE
Q 011978 345 EPAVSKQPKT----RMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT--TGKF--VAVFRG----H--VGPVYQIS 409 (473)
Q Consensus 345 d~~~~~~~~~----~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~--~~~~--~~~~~~----h--~~~v~~v~ 409 (473)
+......... .........+.++|+|+++++.... .+++|.++++. ++.. +..... . ......++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 7654432111 1223345678899999999886665 46789999887 4432 222211 1 12578999
Q ss_pred EecCCCEEEEEe-CCCcEEEEECC--CCce--eecccccCCCEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978 410 WSADSRLLLSGS-KDSTLKVWDIR--TQKL--KQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s~s-~Dg~i~iwd~~--~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~~w~ 472 (473)
++|||++|+++. .++.|.+|++. ++++ +..+......-..+.++|||++|+++. .++.|.+|.
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 999999887765 46789999993 2333 334433334478899999999998877 456777763
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=8.4e-07 Score=82.79 Aligned_cols=251 Identities=19% Similarity=0.244 Sum_probs=148.7
Q ss_pred EEEEEECCCCCeEEEEeC----CCeEEEEeCCCC--c--eeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCC
Q 011978 111 VLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--T--PMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQT 181 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~----d~~i~iwd~~~~--~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~ 181 (473)
...++++|++++|.++.. ++.|..|.+... . .+.........-..++++|++++|+++.+ +|.+.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 445789999999988866 579999988654 2 22222223344567999999999999875 79999999876
Q ss_pred -Ccccccc-CC-----------CcCCcEEEEEeceeccCCCCceEEE-eeCCCcEEEEECCCCe--EEE--Ee-cCcccc
Q 011978 182 -GKPSGNP-LS-----------GHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRK--CVI--CL-SGHTLA 242 (473)
Q Consensus 182 -~~~~~~~-~~-----------~~~~~v~~i~~~~~~~~~~~~~~~s-~s~dg~i~iwd~~~~~--~~~--~~-~~h~~~ 242 (473)
|...... .. .-.....++.+.| +++++++ .-....|.+|++.... ... .+ ......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 3321110 00 0112344555555 4444443 3344578888886654 211 11 123344
Q ss_pred EEEEEecCCCe--EEEeecCCeEEEEECC--CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 243 VTCVKWGGDGV--IYTGSQDCTIKVWETT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 243 v~~~~~~~~~~--l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
-..+.|++++. .++...+++|.++++. ++... . +..+...+.
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~-~-------~~~~~~~~~-------------------------- 239 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT-E-------IQTISTLPE-------------------------- 239 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE-E-------EEEEESCET--------------------------
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee-E-------EEEeeeccc--------------------------
Confidence 56788999873 3456678889988776 33211 0 001100000
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCC--CCce-
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKF- 394 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~--~~~~- 394 (473)
.. ........|+++|||++|.++.. .++|.+|++. ++++
T Consensus 240 ------------------------------------~~-~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 240 ------------------------------------GF-TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT 282 (345)
T ss_dssp ------------------------------------TS-CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred ------------------------------------cc-cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence 00 00124567899999999887664 5689999983 3443
Q ss_pred -EEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCcee
Q 011978 395 -VAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDI--RTQKLK 437 (473)
Q Consensus 395 -~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~--~~~~~~ 437 (473)
+..+.........++++|+|++|+++. .++.|.+|++ .++++.
T Consensus 283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 333332233478999999999999887 4668999976 455543
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1.3e-07 Score=99.88 Aligned_cols=262 Identities=16% Similarity=0.163 Sum_probs=155.5
Q ss_pred EEEECCC-CCeEEEEeCCCeEEEEeCCCCceeEEEc-CC------------CCCEEEEEECCCCCeEEEEec-CCeEEEe
Q 011978 113 SVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT-GH------------KNWVLCIAWSADGKHLVSGSK-AGELQCW 177 (473)
Q Consensus 113 ~~~~sp~-~~~lat~s~d~~i~iwd~~~~~~~~~~~-~~------------~~~v~~l~~s~dg~~l~s~~~-dg~i~iw 177 (473)
.++++++ +..+++-+..+.|++||..+......-. +. -..-..+++++++..|+.+.. .+.|+.+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 5788875 4556666778899999986543221111 11 112467899998887766554 5679999
Q ss_pred eCCCCccccccCCCc---------------CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe------
Q 011978 178 DPQTGKPSGNPLSGH---------------KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL------ 236 (473)
Q Consensus 178 d~~~~~~~~~~~~~~---------------~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~------ 236 (473)
|..++......-.+. -..-.++.+.|. .+..+++.+.++.|++||..++......
T Consensus 652 d~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred ecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 987654321100000 011234555441 3456778888899999998876543211
Q ss_pred --cCc------cccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978 237 --SGH------TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 237 --~~h------~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
.++ ......+++++++ ++++.+.++.|++||..++.... +.+ +..+ .+..
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~g-g~~~-----~~~~------------- 787 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAG-GDPT-----FSDN------------- 787 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEe-cccc-----cCcc-------------
Confidence 011 1234568888876 34455667899999987654211 000 0000 0000
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l 386 (473)
..-.+..|+. .... .-.....++++++|+++++-+.++.|++
T Consensus 788 ------------------------l~~fG~~dG~----------g~~~----~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 788 ------------------------LFKFGDHDGV----------GSEV----LLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred ------------------------cccccCCCCc----------hhhh----hccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 0000000100 0000 0112457899999998888889999999
Q ss_pred EeCCCCceEEEee-------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978 387 WNGTTGKFVAVFR-------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 387 wd~~~~~~~~~~~-------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
||..++....... +.......++++++|+.+++-+.++.|++||+.+++.
T Consensus 830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9998776543321 1223567899999999888888899999999988654
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=1.7e-08 Score=84.46 Aligned_cols=233 Identities=16% Similarity=0.096 Sum_probs=149.4
Q ss_pred EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEec--CCCeEEEeecCCeEEEEECCCCce
Q 011978 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKL 273 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~ 273 (473)
.++.|-|..+...|..++.|+.-|...+|...+... ++....|...|+-+.-. ....+.-++.|.++++.++.-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 456777888878889999999999999999886543 33333343333211111 112467789999999998765433
Q ss_pred eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe
Q 011978 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (473)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 353 (473)
-..+....-.+++++++++ +..+++-++...+..|.+.......
T Consensus 151 ~~~~h~~~~~~ns~~~snd------------------------------------~~~~~~Vgds~~Vf~y~id~~sey~ 194 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSND------------------------------------PSWGSSVGDSRRVFRYAIDDESEYI 194 (344)
T ss_pred cceeeccccceeeeEEcCC------------------------------------CceEEEecCCCcceEEEeCCcccee
Confidence 2222222223555555554 2345666677777777765443322
Q ss_pred e--eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-----EEeeCCccCEEEEEEecCCC--EEEEEeCCC
Q 011978 354 T--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-----AVFRGHVGPVYQISWSADSR--LLLSGSKDS 424 (473)
Q Consensus 354 ~--~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-----~~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg 424 (473)
. ....-.+.--+..|+.....+|++..||++.|||++..... ..-..|.|.+..+.|++-|. +|.-.-.=+
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs 274 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS 274 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc
Confidence 2 22223334456789999999999999999999999865322 12235889999999998664 344444456
Q ss_pred cEEEEECCCCceeecc-------cccCC-CEEEEEEeeCCCEEEEEeCC
Q 011978 425 TLKVWDIRTQKLKQDL-------PGHAD-EVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 425 ~i~iwd~~~~~~~~~~-------~~h~~-~i~~l~~s~d~~~l~s~~~D 465 (473)
.+.+.|+++++..+.+ ..|.. .|+.-.|+.++..+.+.+++
T Consensus 275 ~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 275 RVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred eEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 7999999987654332 22333 38888888888766666554
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=4.3e-09 Score=90.96 Aligned_cols=242 Identities=18% Similarity=0.300 Sum_probs=154.9
Q ss_pred EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 144 ~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
..++||.+.|.....-|...-+++.+.|.++++|--. .++........-...++++.+.+ ...+++.|-..|++
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNGTV 92 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecceE
Confidence 3456788888877777777889999999999999543 33322212222234556666554 34577788888888
Q ss_pred EEEECCC----CeEEEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978 223 RIWDVSL----RKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 223 ~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (473)
.-+.+.. ...+.....|...+..+-|+-. ..+++.+.|..+.---.+.+..+...
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-------------------- 152 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY-------------------- 152 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------------------
Confidence 7775432 2233344567778888777643 35777777765532212222111000
Q ss_pred ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
+..+. + .++.+. -.+...
T Consensus 153 ----------------------------------~~~~~--------~------------------t~~~~d--~~~~fv 170 (404)
T KOG1409|consen 153 ----------------------------------NFETP--------A------------------SALQFD--ALYAFV 170 (404)
T ss_pred ----------------------------------Eeecc--------C------------------CCCcee--eEEEEe
Confidence 00000 0 000000 002222
Q ss_pred EECCCcEEEE--eCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEee
Q 011978 378 ASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 378 gs~d~~v~lw--d~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~ 454 (473)
|...|.|..- ......++..+.+|.+++.+++|.|..+.|.+|+.|..+.+||+-..+. ..++.+|.+.|..+..-+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 3233333222 2234456778999999999999999999999999999999999976544 457889999999998888
Q ss_pred CCCEEEEEeCCCcEEecc
Q 011978 455 DGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 455 d~~~l~s~~~D~~i~~w~ 472 (473)
--+.|.|++.||.|.+|+
T Consensus 251 ~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hheeeeeccCCCeEEEEe
Confidence 889999999999999996
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1e-08 Score=88.74 Aligned_cols=281 Identities=18% Similarity=0.365 Sum_probs=164.9
Q ss_pred ccEEEEEECCCCC--eEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 109 EAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 109 ~~V~~~~~sp~~~--~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
..|+.++|.+++. .+.....|.+|++|.+....... ..++....+.+|.. .+.+..|-.+..
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~vea----- 153 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVEA----- 153 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceeee-----
Confidence 5688899998875 35566789999999875432111 00112222333321 111111111100
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecCcc-----ccEEEEEecCCC-
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHT-----LAVTCVKWGGDG- 252 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~h~-----~~v~~~~~~~~~- 252 (473)
.+......+|.-.|++++++. ++..|++ +.|-.|.+|+++.-. -+..++.+. .-|++..|+|..
T Consensus 154 -~prRv~aNaHtyhiNSIS~Ns-----D~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c 226 (433)
T KOG1354|consen 154 -SPRRVYANAHTYHINSISVNS-----DKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC 226 (433)
T ss_pred -eeeeeccccceeEeeeeeecC-----ccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc
Confidence 112233467888888887543 5556655 467889999876422 233344443 357888898764
Q ss_pred -eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 253 -~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
.++-++..|+|++.|++...+.-...
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hs----------------------------------------------------- 253 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHS----------------------------------------------------- 253 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchh-----------------------------------------------------
Confidence 56667888999999988643321100
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC-CCCceEEEeeCCc--------
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG-TTGKFVAVFRGHV-------- 402 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~-~~~~~~~~~~~h~-------- 402 (473)
+++........+..+.+--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++-|.
T Consensus 254 ----------KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 254 ----------KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred ----------hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 000000000001111222245788999999999998754 58999999 4566777766553
Q ss_pred ----cCE---EEEEEecCCCEEEEEeCCCcEEEEECCCCcee-e-------------------ccc-cc-----------
Q 011978 403 ----GPV---YQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q-------------------DLP-GH----------- 443 (473)
Q Consensus 403 ----~~v---~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~-~-------------------~~~-~h----------- 443 (473)
..| ..++||-++.++++||..+..++|+...+... . ... |.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~l 402 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDAL 402 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchh
Confidence 222 45789999999999999999999995433210 0 000 11
Q ss_pred --CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 444 --ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 444 --~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...|+..+|+|..+.+|.+..++ +.+|.
T Consensus 403 df~kkilh~aWhp~en~ia~aatnn-lyif~ 432 (433)
T KOG1354|consen 403 DFRKKILHTAWHPKENSIAVAATNN-LYIFQ 432 (433)
T ss_pred hhhhHHHhhccCCccceeeeeecCc-eEEec
Confidence 11355678999999888887654 44543
No 277
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=5.7e-07 Score=85.76 Aligned_cols=305 Identities=10% Similarity=0.050 Sum_probs=176.6
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-C---------CEE-EEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N---------WVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~---------~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+..++.++.++.+.-+|..+++.+....-.. . .+. .+.. ++..++.++.+|.++.+|.++|+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 5677778888999999999888776653211 0 000 0111 3567888889999999999999865432
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-----EEEEecCCCeEEEeecCCeE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTI 263 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~s~~~d~~i 263 (473)
... ..+. -.|.. ...+++.++.++.+.-+|..+++.+.......... .+.... ++.++.++.++.+
T Consensus 147 ~~~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v 217 (394)
T PRK11138 147 KVA--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRV 217 (394)
T ss_pred cCC--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEE
Confidence 211 1111 11211 12466778888999999999999887664321100 011111 3567778889999
Q ss_pred EEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978 264 KVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 342 (473)
...|..+|+.+......... -..+ .. +...........+.++.++.++.+.
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~-------------~~---------------~~~~~~sP~v~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEI-------------DR---------------LVDVDTTPVVVGGVVYALAYNGNLV 269 (394)
T ss_pred EEEEccCChhhheeccccCCCccch-------------hc---------------ccccCCCcEEECCEEEEEEcCCeEE
Confidence 99999988876543211000 0000 00 0000000000123566677788888
Q ss_pred EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-CEEEEEEecCCCEEEEEe
Q 011978 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQISWSADSRLLLSGS 421 (473)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s 421 (473)
..|...++.......+. ...+. .++..|..++.++.+..+|..+|+.+-....-.+ ...+... .+.+|+.++
T Consensus 270 ald~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 270 ALDLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 88876554322221111 11111 2456777788899999999999986543321111 1111112 245778889
Q ss_pred CCCcEEEEECCCCceeecccccCCCEEE-EEEeeCCCEEEEEeCCCcEEecc
Q 011978 422 KDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.||.+++.|..+++.+....-....+.+ ... . +..|..++.||.+..+.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~-~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-A-DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-E-CCEEEEEeCCceEEEEe
Confidence 9999999999999886554322222332 122 2 45788889999887764
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=2e-07 Score=84.25 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=80.4
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCce
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS----TLKVWDIRTQKL 436 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg----~i~iwd~~~~~~ 436 (473)
+.|.++..+|+|++++.+.....+-+.|+.+|.....-+...+-|+.+.|||+++++|-+-.+| .|+++|+..++.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 4578899999999999998888888889999987666566678899999999999999887766 589999998776
Q ss_pred eecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 437 KQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 437 ~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
... ....+--++-+|.||+++|.--+
T Consensus 482 y~v-TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDV-TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEe-cCCcccccCcccCCCCcEEEEEe
Confidence 321 11222235678999999886554
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=5.1e-06 Score=86.38 Aligned_cols=350 Identities=17% Similarity=0.237 Sum_probs=179.8
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCC----C---------C----------ceeEEEc------------C---
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN----T---------Q----------TPMFKCT------------G--- 148 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~----~---------~----------~~~~~~~------------~--- 148 (473)
-..+|.+++||||+..||...+++++.+-+-. . + ++-..+. .
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 34689999999999999999989888775321 0 0 0000000 0
Q ss_pred ---------CCCCEEEEEECCCCCeEEEEec---C---CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE
Q 011978 149 ---------HKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (473)
Q Consensus 149 ---------~~~~v~~l~~s~dg~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 213 (473)
+.+.-..++|-.||.++|+.+. . ..+++|+-+ |..... -..-.+.-..++|.|. +..+
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v~gLe~~l~WrPs-----G~lI 271 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPVDGLEGALSWRPS-----GNLI 271 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-cccCCCccCCccCCCC-----CCEE
Confidence 2234567889999999998764 3 468999875 432111 1111122235678873 4556
Q ss_pred EEeeC---CCcEEEEECC---CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceee--eeec-cCceE
Q 011978 214 VSASK---DGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR--ELKG-HGHWV 284 (473)
Q Consensus 214 ~s~s~---dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~-~~~~v 284 (473)
++.-. ...|.+|.-. .+.....+......|..+.|++|+.+++......|.+|-..+....- .+.. ....+
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence 65543 3456666532 23333223345567899999999976555555569999877654321 1111 11223
Q ss_pred EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC--CceEEEecCCceEEEEeCCCCCCCe---eeecCc
Q 011978 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--PERLVSGSDDFTMFLWEPAVSKQPK---TRMTGH 359 (473)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~ 359 (473)
..+.+++............+...... ... ......+.. ..-.+.--+..++.+-.......|. .....-
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~-----~~~-~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYD-----FAW-DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEE-----EEE-EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 33556554332211111111000000 000 000000000 0011111112223332222111110 111123
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc--------eEEEee----------CCccCEEEEEEecCCCEEEEEe
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--------FVAVFR----------GHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~--------~~~~~~----------~h~~~v~~v~~sp~g~~l~s~s 421 (473)
...|.+++|++++..+|+-..||.+.+|...... ....+. .-...+..++|..+...++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 4679999999999889999999999999854321 111111 1234578889988887766666
Q ss_pred CC---CcEEEEECCCCc---eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 011978 422 KD---STLKVWDIRTQK---LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 469 (473)
Q Consensus 422 ~D---g~i~iwd~~~~~---~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 469 (473)
.+ ..+.++++...+ .......-...+..+...++...++.-..||.+.
T Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 54 578888874322 1122222233444555555544355555566554
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=3.6e-06 Score=76.91 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=144.1
Q ss_pred CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-e---------CCCcEEEEECCCCeEEEEecCcc-
Q 011978 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-S---------KDGDARIWDVSLRKCVICLSGHT- 240 (473)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~-s---------~dg~i~iwd~~~~~~~~~~~~h~- 240 (473)
++|.+.|..+++.....-.+..... + .+| ++..+..+ + .+..|.+||..+.+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~sp-----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VAS-----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECC-----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 7899999888776554333322211 1 233 44455444 4 57899999999999887665211
Q ss_pred ------ccEEEEEecCCCe-EEEee-c-CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 241 ------LAVTCVKWGGDGV-IYTGS-Q-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 241 ------~~v~~~~~~~~~~-l~s~~-~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
..-...++++||. ++... . +..+.+.|+.+++.+.++.-.+.+. -+..++.
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~------------------- 158 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTAND------------------- 158 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCC-------------------
Confidence 1223567788884 55443 3 7899999999999888765432111 0001100
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe----eeecCcccc-eeEEEECC-CCcEEEEEECCCcEE
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK----TRMTGHQQL-VNHVYFSP-DGQWVASASFDKSIK 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~-v~~v~~sp-~g~~lasgs~d~~v~ 385 (473)
....-+.|+.............. ..+.+.... ...-.|.+ +|+++..... |+|.
T Consensus 159 -------------------~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~ 218 (352)
T TIGR02658 159 -------------------TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIF 218 (352)
T ss_pred -------------------ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEE
Confidence 01111122222221111000000 000000000 00013455 7877776665 9999
Q ss_pred EEeCCCC-----ceEEEeeC-------CccCEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceeeccccc
Q 011978 386 LWNGTTG-----KFVAVFRG-------HVGPVYQISWSADSRLLLSGSK----------DSTLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 386 lwd~~~~-----~~~~~~~~-------h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~h 443 (473)
+.|+... +....+.. ..+...-++++|+++.+..... .+.|.++|..+++.+..+.-
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 9995432 22222211 2234455999999998887431 24799999999998887763
Q ss_pred CCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978 444 ADEVFAVDWSPDGE-KVASGG-KDRVLKLWM 472 (473)
Q Consensus 444 ~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~ 472 (473)
...+..++++||++ +|.+.. .++.|.+.+
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 34789999999999 777665 567777654
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.3e-06 Score=83.92 Aligned_cols=350 Identities=21% Similarity=0.223 Sum_probs=193.4
Q ss_pred ccccccCCcccEEEEEECCCC------------CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC---CC-C
Q 011978 100 CSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG-K 163 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~------------~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---dg-~ 163 (473)
....++-|...|+.+.|.|-. -+||++.-.|.|.+||.........+..|.+++..++|-+ +. .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 455677899999999998732 2466777789999999988877777788889999999865 34 4
Q ss_pred eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe---------------------------
Q 011978 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--------------------------- 216 (473)
Q Consensus 164 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~--------------------------- 216 (473)
.|++-.....+.+|+..+|......-.+| ....++.+.|... +.|..-
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~----rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDS----RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCc----ceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 56666777899999999987654322222 2233344444211 111111
Q ss_pred -----------------------------------------------eCCCcEEEEECCCCeEEEEecCccccEEEEEec
Q 011978 217 -----------------------------------------------SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (473)
Q Consensus 217 -----------------------------------------------s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 249 (473)
...+.+.++|++-..++....-....+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 122233333333333333332223333445555
Q ss_pred CCC---eEEEeecCCeEEEEECCCCcee-----eeee-ccCceEEEEEecccceeeeccccCCCc-----ccCCHH-HHH
Q 011978 250 GDG---VIYTGSQDCTIKVWETTQGKLI-----RELK-GHGHWVNSLALSTEYALRTGAFDHTGK-----QYSSPE-EMK 314 (473)
Q Consensus 250 ~~~---~l~s~~~d~~i~~wd~~~~~~~-----~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~ 314 (473)
|++ .|++...||.+.+|-.+.-... ..+. .-...+..+....+.....+..-+... .+...+ .+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 554 5889999999999964331100 0110 001122222222222111111111100 000000 000
Q ss_pred HHHHhhhhcc------------------cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC-------
Q 011978 315 KAALERYNKI------------------KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS------- 369 (473)
Q Consensus 315 ~~~~~~~~~~------------------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s------- 369 (473)
.....+.... .......+..-++|| +|.....+....
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg------------------~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG------------------SHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcC------------------CCCCCceeeecccCcccce
Confidence 0000000000 000001122222332 232222222222
Q ss_pred ----CCC-------cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE---------EEeCCCcEEEE
Q 011978 370 ----PDG-------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL---------SGSKDSTLKVW 429 (473)
Q Consensus 370 ----p~g-------~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~---------s~s~Dg~i~iw 429 (473)
|.| .++|.|...|+|.++|+.++.....+..|.+.|.++.|--...++- +++--+.+.+-
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vt 503 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT 503 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEE
Confidence 222 3688999999999999999998888999999999999976544332 22223457788
Q ss_pred ECCCCcee--ecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 430 DIRTQKLK--QDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 430 d~~~~~~~--~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+++|..+ ..+++ ...+|..+..|.-|+||+..=.|.-+-+|.
T Consensus 504 dLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 504 DLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred EcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 99987543 22222 346899999999999999998888888875
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=1.8e-08 Score=89.06 Aligned_cols=161 Identities=18% Similarity=0.314 Sum_probs=111.7
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCEEEEEECCCCCeEEEEecC---CeEEEeeCCCCcc
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKP 184 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~ 184 (473)
...+..+++++++|.+..+....++++....+ +.....-...-.++.|-.+......+... ..+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44566788888999888888877777654332 11111112223344444445555544444 4556666554433
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCCeEEEeecCCeE
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~s~~~d~~i 263 (473)
.++-||-..+..+.|+| +...++++..|..||+=....-..+.. .-||..-|..++..++..|++|+.|+++
T Consensus 145 --~~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 145 --EPILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTL 217 (390)
T ss_pred --chhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcE
Confidence 45789999999999987 457899999999999976654333333 3489999999999888889999999999
Q ss_pred EEEECCCCceeeeee
Q 011978 264 KVWETTQGKLIRELK 278 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~ 278 (473)
++||+++|+.+.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999876553
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=4.4e-06 Score=73.59 Aligned_cols=257 Identities=14% Similarity=0.184 Sum_probs=152.4
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCC--CceeEE--EcCCCCCEEEEEECCCCCeEEEEecC-CeEE
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKA-GELQ 175 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~--~~~~~~--~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~ 175 (473)
+..+.+.++-++|+|+.++|.++-. +|.|.-|.+.. ++..+. ......+-..++++++|++++++.+. |.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456677888999999999988754 57788887764 432221 11122333678999999999998875 7888
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I 254 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l 254 (473)
++-++....+. .+..+..+ ...+-...+-.+| +.+..++|++. |
T Consensus 115 v~p~~~dG~l~--------~~v~~~~h------------------------~g~~p~~rQ~~~h---~H~a~~tP~~~~l 159 (346)
T COG2706 115 VYPLQADGSLQ--------PVVQVVKH------------------------TGSGPHERQESPH---VHSANFTPDGRYL 159 (346)
T ss_pred EEEcccCCccc--------cceeeeec------------------------CCCCCCccccCCc---cceeeeCCCCCEE
Confidence 88775421110 01110000 0000000111122 45677888884 4
Q ss_pred EEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 255 YTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 255 ~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
++.+ .-..|.+|++..|++...-.. .+
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~---------------------------------------------------~v- 187 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPA---------------------------------------------------EV- 187 (346)
T ss_pred EEeecCCceEEEEEcccCcccccccc---------------------------------------------------cc-
Confidence 4433 223677888776654221000 00
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC-ceEEEeeC---------Cc
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG-KFVAVFRG---------HV 402 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~-~~~~~~~~---------h~ 402 (473)
......+.|+|+|++++..... .+++|-+|..... ..+..++. ..
T Consensus 188 ------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 188 ------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred ------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 0112356789999999887665 4889999988763 22222221 13
Q ss_pred cCEEEEEEecCCCEEEEEeC-CCcEEEEECCC--Cce--eecccccCCCEEEEEEeeCCCEEEEEeCCC-cEEec
Q 011978 403 GPVYQISWSADSRLLLSGSK-DSTLKVWDIRT--QKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR-VLKLW 471 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~--~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~-~i~~w 471 (473)
.+..++..+|||++|.++.. ...|-+|.+.. +++ ......+...-....++++|++|+.+..|+ .|.+|
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 46788999999999987743 33688887753 332 222222333346788999999999988764 45554
No 284
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=3.5e-09 Score=63.69 Aligned_cols=39 Identities=51% Similarity=0.993 Sum_probs=36.9
Q ss_pred CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
|+++.++++|.++|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=3e-09 Score=97.52 Aligned_cols=200 Identities=15% Similarity=0.284 Sum_probs=133.2
Q ss_pred EEEecCccccEEEEE-ecCCCeEEEeecCCeEEEEECCCC-------ceeeeeeccCceEEEEEecccceeeeccccCCC
Q 011978 233 VICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQG-------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~-~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 304 (473)
+..+.||...|..+. .+.++.+++++.|+++++|.++.. .+..+...|..+|..+.+-.+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~------------ 795 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD------------ 795 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec------------
Confidence 345678988887765 345567999999999999987632 233445667777766654332
Q ss_pred cccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee----cCcccceeEEEECCCCcEEEEE-E
Q 011978 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASA-S 379 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~lasg-s 379 (473)
.-...+.|+-+.+||+..+....... .+....|.++- +-+...+..| +
T Consensus 796 --------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcs 848 (1034)
T KOG4190|consen 796 --------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCS 848 (1034)
T ss_pred --------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeecc
Confidence 11234568999999986543221110 11112233322 1134444444 7
Q ss_pred CCCcEEEEeCCCCceEEEee-----CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978 380 FDKSIKLWNGTTGKFVAVFR-----GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 380 ~d~~v~lwd~~~~~~~~~~~-----~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
...+|+++|.+.++....++ +..+.+.+++..|.|+.+|.+=..|.|.+.|.++|+.+..+..-.-....++ .|
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-ap 927 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-AP 927 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cc
Confidence 78899999999987766554 3446689999999999999999999999999999998876665444444554 34
Q ss_pred CCCEEEEEeCCCcEEe-cc
Q 011978 455 DGEKVASGGKDRVLKL-WM 472 (473)
Q Consensus 455 d~~~l~s~~~D~~i~~-w~ 472 (473)
..+.|+....|.++.+ |.
T Consensus 928 sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred hhHHHHhhcccceeEeeeh
Confidence 4567777777777777 65
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=7.3e-07 Score=82.30 Aligned_cols=280 Identities=15% Similarity=0.284 Sum_probs=143.5
Q ss_pred ccEEEEEECCCCCeEEEEeC-----------CCeEEEEeCCCCceeEEEcC--CCCCEE-EEEECCCCCeEEEEecCCeE
Q 011978 109 EAVLSVAFSPDGRQLASGSG-----------DTTVRLWDLNTQTPMFKCTG--HKNWVL-CIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~-----------d~~i~iwd~~~~~~~~~~~~--~~~~v~-~l~~s~dg~~l~s~~~dg~i 174 (473)
..|.-+.|||..++|+|=+. ...+.|||+.+|.....+.. ....++ -..||.|++++|.-.. ..|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 34788999999999998642 25799999999987665544 222232 3579999999987655 678
Q ss_pred EEeeCCCCccccccCCCcC---CcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECCCCeEEEEecCccccEEEE
Q 011978 175 QCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSLRKCVICLSGHTLAVTCV 246 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 246 (473)
.||+...-.. +.... ..|....|+|.. ..++-=+. -..+.+..+.+++.+.+..-|...=-.+
T Consensus 329 sIyEtpsf~l----ld~Kslki~gIr~FswsP~~-----~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckL 399 (698)
T KOG2314|consen 329 SIYETPSFML----LDKKSLKISGIRDFSWSPTS-----NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKL 399 (698)
T ss_pred EEEecCceee----ecccccCCccccCcccCCCc-----ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEE
Confidence 8887644211 11111 234555677742 12221110 1123344444444443332222111224
Q ss_pred EecCCCeEEEeecC-----------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 247 KWGGDGVIYTGSQD-----------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 247 ~~~~~~~l~s~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
-|..+|..++---| ..+-|+.++ ...-+|..+.+... +...++++.+..+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir---------eKdIpve~velke~--vi~FaWEP~gdkF-------- 460 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR---------EKDIPVEVVELKES--VIAFAWEPHGDKF-------- 460 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEee---------ccCCCceeeecchh--eeeeeeccCCCeE--------
Confidence 45555432221111 112222222 22222222222111 1111222222111
Q ss_pred HHHhhhhcccCCCCceEEEec-CCceEEEEeCCC-CCCCeeeecCcccceeEEEECCCCcEEEEEE---CCCcEEEEeCC
Q 011978 316 AALERYNKIKGNAPERLVSGS-DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGT 390 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs---~d~~v~lwd~~ 390 (473)
.+++|- ...++.+|.+.. ...+.....-.....+.+.|+|.|++++.+. ..|.+.++|..
T Consensus 461 ---------------~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 461 ---------------AVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred ---------------EEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 012221 133456665542 2221111111124567899999999998764 46889999987
Q ss_pred CCceEEEe-eCCccCEEEEEEecCCCEEEEEeC------CCcEEEEECCC
Q 011978 391 TGKFVAVF-RGHVGPVYQISWSADSRLLLSGSK------DSTLKVWDIRT 433 (473)
Q Consensus 391 ~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~------Dg~i~iwd~~~ 433 (473)
-..+..+- ..| ...+.+.|.|.|+|+++++. |.--+||++..
T Consensus 526 ~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 526 YADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 43322221 223 35678999999999999886 34456777654
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=1.7e-06 Score=91.57 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=95.7
Q ss_pred ceEEEecCCceEEEEeCCCCCCCee-------eecC------cccceeEEEECCCCcEE-EEEECCCcEEEEeCCCCceE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKT-------RMTG------HQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFV 395 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~------~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~~~~~ 395 (473)
..+++.+.++.|++||......... ...+ .-.....++++|+|++| ++-+.++.|++||+.++...
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 3456667778888888643321000 0001 11245679999999854 45556789999999876532
Q ss_pred EEeeC-------------C--------ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc-------------c
Q 011978 396 AVFRG-------------H--------VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-------------P 441 (473)
Q Consensus 396 ~~~~~-------------h--------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------------~ 441 (473)
....+ + ......++++++|+.+++-+.++.|++||..++...... .
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 11100 0 112358999999998888888999999999876654221 1
Q ss_pred ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 442 GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 442 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.-.....++++++|+.+++-+.+++|++|+
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 1122467899999999999999999999986
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.9e-07 Score=88.51 Aligned_cols=266 Identities=15% Similarity=0.268 Sum_probs=158.2
Q ss_pred CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc--------------ccccCCCcCCcEEEEEeceeccCCCCceEEEe
Q 011978 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (473)
Q Consensus 151 ~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~ 216 (473)
....|++|+.+..+|++|+.||.+++..+.+... ..+.+.||+..|.-+.|+.. ...+-+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-----~QKLTtS 89 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-----NQKLTTS 89 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-----ccccccc
Confidence 3478999999999999999999999998764221 23567899999999999763 3467777
Q ss_pred eCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEeccc
Q 011978 217 SKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTE 292 (473)
Q Consensus 217 s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~ 292 (473)
..+|.|.+|-+-.+.-...+ ......|.+++|+.|| .+...-.||.|.+=.+..++.. +.+++ .....+.++++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 88999999987654322111 1234567899999888 4777778888877655433221 11221 11122223332
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC---ee-------eecCcccc
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KT-------RMTGHQQL 362 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~-------~~~~~~~~ 362 (473)
... ++.+-..|.+.++|....... .. .+......
T Consensus 168 ~~~------------------------------------~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k 211 (1189)
T KOG2041|consen 168 LEQ------------------------------------ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK 211 (1189)
T ss_pred HHH------------------------------------HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc
Confidence 111 111122233334432111000 00 00000001
Q ss_pred eeEE--------EECCCCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---------
Q 011978 363 VNHV--------YFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--------- 424 (473)
Q Consensus 363 v~~v--------~~sp~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--------- 424 (473)
+-.+ -.-||...||.+-..|.+++-.-.+. .++..-.+ -.+....|+++|..||.++.|.
T Consensus 212 ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 212 IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccc
Confidence 1112 12468889999999999888754433 23222222 4578899999999999988753
Q ss_pred cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 425 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 425 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
.|.+|.. -|+...+++-....|++++|-..|-.+|-+
T Consensus 290 ~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 290 KVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred eEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 2344432 245556666666789999998777665543
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.1e-06 Score=81.76 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred cEEEEEECCCCCe-EEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cC--CeEEEeeCCCC
Q 011978 110 AVLSVAFSPDGRQ-LASGSG---DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KA--GELQCWDPQTG 182 (473)
Q Consensus 110 ~V~~~~~sp~~~~-lat~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~d--g~i~iwd~~~~ 182 (473)
......|+|||+. ++..+. +..|.++|+.+++..... ...+......|+|||+.|+... .+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 664443 357899999887654332 3455567788999998876543 23 34555555443
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=2.1e-06 Score=81.90 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=152.0
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEE
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 198 (473)
++..++.++.++.+.-+|.++++.+.+.........+... .+..++.+..++.+..+|.++|+...............
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3566777888999999999999887765432211111111 24567778889999999999998654321110000000
Q ss_pred EEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc----c------cE-EEEEecCCCeEEEeecCCeEEEEE
Q 011978 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----L------AV-TCVKWGGDGVIYTGSQDCTIKVWE 267 (473)
Q Consensus 199 i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~----~------~v-~~~~~~~~~~l~s~~~d~~i~~wd 267 (473)
..-.|.. ....++.++.++.+...|..+++.+....-.. . .+ .+... .++.++.++.++.+.-+|
T Consensus 197 ~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 197 GESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALD 272 (394)
T ss_pred CCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEE
Confidence 0011211 12356667788889888988887654432100 0 00 01111 256788888899999999
Q ss_pred CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
..+|+.+........ ..+. ...+.++.++.++.+...|..
T Consensus 273 ~~tG~~~W~~~~~~~--~~~~--------------------------------------~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 273 LRSGQIVWKREYGSV--NDFA--------------------------------------VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred CCCCCEEEeecCCCc--cCcE--------------------------------------EECCEEEEEcCCCeEEEEECC
Confidence 999987654321100 0000 012356667778888888875
Q ss_pred CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE-EEEecCCCEEEEEeCCCcE
Q 011978 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ-ISWSADSRLLLSGSKDSTL 426 (473)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~-v~~sp~g~~l~s~s~Dg~i 426 (473)
.++..............+..+ .+.+|+.++.||.+...|..+|+.+...+-....+.+ ..+ .+..|+.++.||.+
T Consensus 313 tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l 388 (394)
T PRK11138 313 GGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTV 388 (394)
T ss_pred CCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceE
Confidence 543211111000011111112 2567788899999999999999988776543333322 122 34578888999999
Q ss_pred EEEEC
Q 011978 427 KVWDI 431 (473)
Q Consensus 427 ~iwd~ 431 (473)
+.++.
T Consensus 389 ~~~~~ 393 (394)
T PRK11138 389 YAITR 393 (394)
T ss_pred EEEeC
Confidence 88764
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=6e-06 Score=70.55 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=86.6
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCC---CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHK---NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~---~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
++.+++|+.||.- .|..|.|=..+.. ..+.+++.++ -.=.-++||||+..||.+...|+|+++|+.........
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5778899988875 4667777654432 1222332222 22357999999999999999999999998753321110
Q ss_pred -----CCCcCCcEEEEEeceeccCCC-CceEEEeeCCCcEEEEECCCC-----eEEE--EecC-ccccEEEEEecCCC-e
Q 011978 189 -----LSGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLR-----KCVI--CLSG-HTLAVTCVKWGGDG-V 253 (473)
Q Consensus 189 -----~~~~~~~v~~i~~~~~~~~~~-~~~~~s~s~dg~i~iwd~~~~-----~~~~--~~~~-h~~~v~~~~~~~~~-~ 253 (473)
...-...|.++.|.+...+.. ...++....+|.++-+-+..+ +... .+.. +...|.++.+++.. +
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 111234566666665443322 235677777887777765321 1122 2222 36689999999875 4
Q ss_pred EEEee
Q 011978 254 IYTGS 258 (473)
Q Consensus 254 l~s~~ 258 (473)
|+.|+
T Consensus 162 LlVgG 166 (282)
T PF15492_consen 162 LLVGG 166 (282)
T ss_pred EEEec
Confidence 44444
No 292
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.2e-08 Score=61.41 Aligned_cols=37 Identities=54% Similarity=0.997 Sum_probs=34.5
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEe
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd 136 (473)
+..++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=5.6e-06 Score=78.86 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=107.4
Q ss_pred cEEEEEecCCCe--EEEeec---CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978 242 AVTCVKWGGDGV--IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (473)
Q Consensus 242 ~v~~~~~~~~~~--l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
......|++||. ++..+. +..|.++|+.+++...... .........++|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~--------------------- 246 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK--------------------- 246 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE---------------------
Confidence 567789999883 443332 4578899998876543322 2233334445554311
Q ss_pred HHhhhhcccCCCCceEEEecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCC
Q 011978 317 ALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTT 391 (473)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~ 391 (473)
.+++.+. +..+++++..... ...+..+........|+|||+.|+..+.. + .|.+.|+.+
T Consensus 247 --------------la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 247 --------------LLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred --------------EEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 1222222 3456666754432 23333333323456899999988877643 2 578888888
Q ss_pred CceEEEeeCCccCEEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
++....... +. ....|||||++|+..+.. ..|.+.|+.++... .+.... ......|+|||+.|+..
T Consensus 311 g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 311 GSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-CcCCeEECCCCCEEEEE
Confidence 776443321 11 124899999988876654 26888888877543 333222 23357899999988766
Q ss_pred eCC
Q 011978 463 GKD 465 (473)
Q Consensus 463 ~~D 465 (473)
+.+
T Consensus 386 ~~~ 388 (419)
T PRK04043 386 KYL 388 (419)
T ss_pred Ecc
Confidence 543
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=8.5e-06 Score=71.96 Aligned_cols=224 Identities=19% Similarity=0.154 Sum_probs=133.7
Q ss_pred CCeEEEEeCCCCceeEEEcCC--CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC-CcEEEEEeceec
Q 011978 129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVH 205 (473)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~ 205 (473)
+|+|..||..+++.+....-- .....+. ..+++..+++++.++.|+.||..+|+.......... ... |.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~------~~- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA------PV- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG------EE-
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce------ee-
Confidence 688999999999888766421 1222221 223567888889999999999999986432211110 000 10
Q ss_pred cCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCc----c-ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGH----T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h----~-~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
.....++.++.++.+..+|..+++.+... ... . .......+. ++.++.+..++.|..+|..+|+.+.....
T Consensus 74 --~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 74 --VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp --EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred --ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 12346677778889999999999988773 322 1 111122223 45678888899999999999988766543
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
...... ..+. .
T Consensus 151 ~~~~~~--------------------------------------------~~~~---------------------~---- 161 (238)
T PF13360_consen 151 GEPRGS--------------------------------------------SPIS---------------------S---- 161 (238)
T ss_dssp STT-SS----------------------------------------------EE---------------------E----
T ss_pred CCCCCC--------------------------------------------ccee---------------------e----
Confidence 211000 0000 0
Q ss_pred ccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
...+..-.+..++ .+..++.++. +.+ |..+++.+-... ...+.. ...+++..|+.++.++.|..||+++++.+
T Consensus 162 ~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 162 FSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 0001111112234 5556666664 555 999998654322 222222 13567788888889999999999998764
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=5.5e-06 Score=69.78 Aligned_cols=233 Identities=10% Similarity=0.031 Sum_probs=132.5
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 241 (473)
-.+|+.|+..|.+.+|...+.+........|...|+-+ .- .......+..++.|.++++.+++.+..-....-...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~---~r-~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV---KR-YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhh---hh-hcccccceeeccCCcceeEEEEecCcccceeecccc
Confidence 35789999999999999876543222222222211111 00 001112456788899999988765433222211123
Q ss_pred cEEEEEecCCCe-EEEeecCCeEEEEECCCCce-eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 242 AVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 242 ~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
.+.++.+++++. +++.+.-..|..|.+..... +... .++-..+..+.. +
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~--------~~a~t~D~gF~~-S-------------------- 210 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI--------YEAPTSDHGFYN-S-------------------- 210 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee--------EecccCCCceee-e--------------------
Confidence 377888998885 55667777888887654321 1100 001011111100 0
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCee----eecCcccceeEEEECCCCc--EEEEEECCCcEEEEeCCCCc
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQ--WVASASFDKSIKLWNGTTGK 393 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~v~~sp~g~--~lasgs~d~~v~lwd~~~~~ 393 (473)
.......++++..||++.+||++....+.. .-..|.+.++.+.|+|.|. +|...-.=+.+.+-|+++++
T Consensus 211 -----~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 211 -----FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -----eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 011245789999999999999876544322 2345888999999998664 44444445689999999886
Q ss_pred eEEEee-------CCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 394 FVAVFR-------GHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 394 ~~~~~~-------~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
....+. .|. ..|..-.|+.++.-+.+.+.+ .+.-|++.+
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 544332 232 236666677666555544433 245555544
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=3e-07 Score=81.54 Aligned_cols=103 Identities=30% Similarity=0.432 Sum_probs=81.5
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-eCCccCEEEEEEecC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQISWSAD 413 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~ 413 (473)
.++...+.+|.... .....+.||-.-+..|+++||+++|+++..|..||+-.+...-.+..| -||...|..++.-++
T Consensus 128 agD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 128 AGDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred cCCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 44555666666543 444567899999999999999999999999999999877655444443 479999999998654
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 414 SRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
+.|+++|.|+++++||+.+++.+.++
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCccccc
Confidence 56999999999999999998876543
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=0.00011 Score=65.13 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=125.7
Q ss_pred ceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeeeeec-----cCceE
Q 011978 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV 284 (473)
Q Consensus 211 ~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----~~~~v 284 (473)
..+.+--..+.|..||..+++........ ...+.+. +++.++.+..++. .++|..+++....... .....
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence 34555556788888988887665422222 4555666 6788877776555 4559888755433332 23455
Q ss_pred EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (473)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (473)
+.+++.++..+..+........ ....+.+..++.. . ....+...-...+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~----------------------------~~~~g~v~~~~~~-~--~~~~~~~~~~~pN 137 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGAS----------------------------GIDPGSVYRIDPD-G--KVTVVADGLGFPN 137 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTT----------------------------CGGSEEEEEEETT-S--EEEEEEEEESSEE
T ss_pred ceEEEcCCCCEEEEecCCCccc----------------------------cccccceEEECCC-C--eEEEEecCccccc
Confidence 6666666543322111100000 0000445555543 1 1122222234578
Q ss_pred EEEECCCCcEEE-EEECCCcEEEEeCCCCc--e-----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978 365 HVYFSPDGQWVA-SASFDKSIKLWNGTTGK--F-----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 365 ~v~~sp~g~~la-sgs~d~~v~lwd~~~~~--~-----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
.++|+|+++.|. +-+..+.|..+++.... . ...+....+..-.+++..+|++.++....+.|.++|.. ++.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 899999998776 55667788888875322 1 11222222347889999999988887788999999988 777
Q ss_pred eecccccCCCEEEEEEe-eCCCEEEEE
Q 011978 437 KQDLPGHADEVFAVDWS-PDGEKVASG 462 (473)
Q Consensus 437 ~~~~~~h~~~i~~l~~s-~d~~~l~s~ 462 (473)
+..+.-....+++++|. ++.+.|...
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 66555444589999994 666655443
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=0.00011 Score=65.30 Aligned_cols=217 Identities=17% Similarity=0.216 Sum_probs=130.3
Q ss_pred EEEECC-CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978 155 CIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233 (473)
Q Consensus 155 ~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~ 233 (473)
++.|.+ ++.++++--..+.|+.|+..++........+ ..++.+.. ....++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~-----~~g~l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR-----PDGRLYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC-----TTSEEEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc-----cCCEEEEEEcC-ceEEEecCCCcEE
Confidence 567887 5655566557899999999887654322222 45555442 12456666654 4555598888654
Q ss_pred EEec----C-ccccEEEEEecCCCeEEEeecC---------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 234 ICLS----G-HTLAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 234 ~~~~----~-h~~~v~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.... . .......++++++|.++.+... |.+..++.. ++. ..+...-...+.++++++..
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~----- 146 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGK----- 146 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSS-----
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcch-----
Confidence 3332 2 3456788999999976655432 446666655 332 22222223345566655421
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC-C--eee---ecCcccceeEEEECCCCc
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-P--KTR---MTGHQQLVNHVYFSPDGQ 373 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~--~~~---~~~~~~~v~~v~~sp~g~ 373 (473)
..+++-+..+.|..++...... . ... +.......-.+++..+|+
T Consensus 147 ------------------------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 147 ------------------------------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp ------------------------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred ------------------------------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 1244666677777777643332 1 111 122223467899999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-cCCCEEEE
Q 011978 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLS 419 (473)
Q Consensus 374 ~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g~~l~s 419 (473)
+.++....+.|.++|.+ |+.+..+......+++++|. ++.+.|..
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 88888888999999987 88888777665689999994 66555544
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=6.7e-05 Score=66.27 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=125.4
Q ss_pred EEEECC-CCCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCE--EEEEECCCCCeEEEEe-----cCCeEEEeeCCCCc
Q 011978 113 SVAFSP-DGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGS-----KAGELQCWDPQTGK 183 (473)
Q Consensus 113 ~~~~sp-~~~~lat~s~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~l~~s~dg~~l~s~~-----~dg~i~iwd~~~~~ 183 (473)
.++.+| .+..++.+-.-| ...+||..+++....+....+.- =.-.||+||++|++.= ..|.|-+||...+-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 467788 455567776665 46899999888766554333221 1357999999999853 34789999998332
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEe------------------eCCCcEEEEECCCCeEEEE--e--cCccc
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA------------------SKDGDARIWDVSLRKCVIC--L--SGHTL 241 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~------------------s~dg~i~iwd~~~~~~~~~--~--~~h~~ 241 (473)
...-.+..|.-.-..+.+.| ++..++.+ +.+-++...|..+++.+.. + .-|..
T Consensus 89 ~ri~E~~s~GIGPHel~l~p-----DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMP-----DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred EEEeEecCCCcChhhEEEcC-----CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 11112222222222233333 33333332 2233344444445544433 2 12444
Q ss_pred cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.|.-++++++|.++.|.... -...
T Consensus 164 SiRHLa~~~~G~V~~a~Q~q------g~~~-------------------------------------------------- 187 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQ------GDPG-------------------------------------------------- 187 (305)
T ss_pred ceeeEEecCCCcEEEEEecC------CCCC--------------------------------------------------
Confidence 55555555555444333210 0000
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG 400 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~ 400 (473)
..+-.++.-..+..+...+... .....-...+-+|++++++.++++.+ .-+.+.+||..+++++....-
T Consensus 188 -----~~~PLva~~~~g~~~~~~~~p~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 188 -----DAPPLVALHRRGGALRLLPAPE-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred -----ccCCeEEEEcCCCcceeccCCh-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence 0011122222222222222110 11112235688999999998886655 567899999999998776543
Q ss_pred CccCEEEEEEecCCCEEEEEeC
Q 011978 401 HVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
.-+..|+-.+++ ++++.+.
T Consensus 258 --~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 258 --PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred --CceeeeeecCCc-eEEeCCC
Confidence 346677777666 6665543
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=2.5e-05 Score=68.93 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=129.2
Q ss_pred CCcEEEEECCCCeEEEEecCc--cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978 219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (473)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (473)
+|+|..||..+++.+....-. .....+.....++.+++++.++.+..||..+|+.+.+...........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--------- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--------- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE---------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee---------
Confidence 678899999999888766421 122222233356788888999999999999999877654321100000
Q ss_pred eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee-ecCc--ccceeEEEECCCCc
Q 011978 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MTGH--QQLVNHVYFSPDGQ 373 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~--~~~v~~v~~sp~g~ 373 (473)
......++.++.++.++.+|...++..... .... ...........++.
T Consensus 73 -----------------------------~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 73 -----------------------------VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD 123 (238)
T ss_dssp -----------------------------EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT
T ss_pred -----------------------------eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC
Confidence 011234666667778888886665543331 1110 01112222333478
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEeeCCccC----------EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGP----------VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 374 ~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~----------v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h 443 (473)
.++.+..++.|..+|.++|+.+..+...... +..-....++ .+..++.++.+.-+|+.+++.+-...
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-- 200 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-- 200 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--
Confidence 8888888999999999999998777654322 1222222344 67777777864444999988553222
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 444 ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 444 ~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...+..+ ...++..|+.++.|+.+..|+
T Consensus 201 ~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 201 ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1223331 356778888888899998875
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=1.2e-06 Score=73.23 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=86.3
Q ss_pred CCCCeEEEEecCCeEEEeeCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeE
Q 011978 160 ADGKHLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKC 232 (473)
Q Consensus 160 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~ 232 (473)
-.+..++++..||.+.+.+.+.-..... ....|.+.......+. ..++..+. -+..+.|+++-.+.
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~-------~~~i~s~~~g~~n~~d~~~a~~~~p~~t 171 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRH-------GNSILSGGCGNWNAQDNFYANTLDPIKT 171 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeec-------ccEEecCCcceEeeccceeeeccccccc
Confidence 3467899999999999998764211111 1111111100000000 12333222 34456666654333
Q ss_pred EEEecCccccEEEEEecCC--CeEEEeecCCeEEEEECCCCcee-eeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978 233 VICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
+..-..-...|++++-+|. .++++|+.||.+-+||.++.... ..++.|+..++.+.|+|.
T Consensus 172 ~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk----------------- 234 (319)
T KOG4714|consen 172 LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK----------------- 234 (319)
T ss_pred ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----------------
Confidence 2221122234777777664 36889999999999999876433 345677777777777764
Q ss_pred HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
.++.|++++.||.+..||..
T Consensus 235 ------------------~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 235 ------------------NPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ------------------CchheeEecCCCcEEEEcCC
Confidence 36789999999999999853
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=3.7e-07 Score=76.28 Aligned_cols=145 Identities=16% Similarity=0.224 Sum_probs=92.4
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-----CCcEEEEeCCCCceEEEeeCCcc
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-----DKSIKLWNGTTGKFVAVFRGHVG 403 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-----d~~v~lwd~~~~~~~~~~~~h~~ 403 (473)
...++++..|+.+.+.+...-.....+.......--+.++...++.+.++.. -+..+.|+++..+.+..-.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 3468899999999998865422221111111111112233345555555432 12455666553332211111223
Q ss_pred CEEEEEEecCCC-EEEEEeCCCcEEEEECCCCce-eecccccCCCEEEEEEeeC-CCEEEEEeCCCcEEeccC
Q 011978 404 PVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 404 ~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~~w~~ 473 (473)
.|.+++-+|..+ .+++|+.||.+-+||++.... ...+..|..+|+.+.|+|. +..|.+++.||.+.-|.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 489999999654 667788999999999987644 3456789999999999985 568999999999999874
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.7e-07 Score=81.39 Aligned_cols=150 Identities=17% Similarity=0.291 Sum_probs=107.8
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc---ccccCCCcCCcEEEEE
Q 011978 124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGIS 200 (473)
Q Consensus 124 at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~ 200 (473)
++.+.+..|-+-|++++.... +. ....|.++.|...+..+..|..+|.|...|++.+.. .....--|...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 556677788888888764321 22 455688899998889999999999999999976421 1111223555555543
Q ss_pred eceeccCCCCceEEEeeCCCcEEEEECCCCeE---EEEecCccccEEEEEec---CCCeEEEeecCCeEEEEECCCCcee
Q 011978 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~ 274 (473)
... .+...+++.+.+|+|++||.+.-++ +.+..||...-.-+.+. .+|.+++++.|...|+|.+..|+++
T Consensus 306 ~Lq----~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 306 ILQ----FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhc----cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 211 1345788889999999999987777 88899997654444432 3568999999999999999999988
Q ss_pred eeeec
Q 011978 275 RELKG 279 (473)
Q Consensus 275 ~~~~~ 279 (473)
.++..
T Consensus 382 ~tipf 386 (425)
T KOG2695|consen 382 CTIPF 386 (425)
T ss_pred eccCC
Confidence 77643
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.7e-06 Score=77.94 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=161.4
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC--Cce-eEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTP-MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTG 182 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~--~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~ 182 (473)
|.+.|+.+.- .-.+++.+++.||.++.|--.. +.. +..+..|-..|.+++.+.+|..+.|++. |..++++|+++-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 6666666543 3457889999999999996432 211 2234578888999999999999999777 999999998764
Q ss_pred ccccc----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE--EEecCccccEEEEEecCCC-eEE
Q 011978 183 KPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 183 ~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~-~l~ 255 (473)
..... .+.+.-.+++ .+.. .....-++.-.++.+.++|-....|. ..-.-|..+|.++.+++-+ ..+
T Consensus 87 DminmiKL~~lPg~a~wv~----skGd--~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVT----SKGD--KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred chhhhcccccCCCceEEec----CCCC--eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 43211 1111111111 1100 00112234456789999997655432 2334588999999998766 467
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+....|.|.-|.... ..+..+. .+.+...
T Consensus 161 SiD~~gmVEyWs~e~--~~qfPr~------~l~~~~K------------------------------------------- 189 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEG--PFQFPRT------NLNFELK------------------------------------------- 189 (558)
T ss_pred eccccceeEeecCCC--cccCccc------ccccccc-------------------------------------------
Confidence 777889999997652 0000000 0000000
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee----------------
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---------------- 399 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~---------------- 399 (473)
..-.+++ +........++.|+|+|..+++-+.|..|++++..+|++++.+.
T Consensus 190 ---~eTdLy~----------f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 190 ---HETDLYG----------FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ---ccchhhc----------ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 0000011 01112346789999999999999999999999999887654332
Q ss_pred ----------------CCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 400 ----------------GHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 400 ----------------~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
.|. -.-+...|...|++|+-++.=| |++.++.++....
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 111 1234567888899999887766 8888888765543
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.4e-05 Score=75.57 Aligned_cols=242 Identities=15% Similarity=0.179 Sum_probs=158.5
Q ss_pred EEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceecc-----C--CCCceEEEeeCCCcEEEE
Q 011978 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL-----N--APCRRFVSASKDGDARIW 225 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~--~~~~~~~s~s~dg~i~iw 225 (473)
-.++.|+|.| .|+.|+- ..|.+-|..+-+.+ +.+.-|...|+.+.|.|... + ..+-.++++...|.|.+|
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~i-qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLI-QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhh-hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 4577899876 5666654 46777787665433 45677889999999988532 1 134467778888999999
Q ss_pred ECCCCeEEEEecCccccEEEEEecC---CC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 226 DVSLRKCVICLSGHTLAVTCVKWGG---DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~---~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
|...+..+..+..|...+..++|-+ +. .|++-..-.++.+|+..+|+.............++.+.|-..
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~------ 168 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS------ 168 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc------
Confidence 9999888888888999998888843 22 466667778999999999988876655555555555544210
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC------CCeeeecCcc--------------
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQ-------------- 360 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~-------------- 360 (473)
..+..-+..|.+.+-+..... +.......|.
T Consensus 169 -----------------------------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 169 -----------------------------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred -----------------------------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 011111111111111110000 0000000000
Q ss_pred -----------cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC--EEEEEeCCCcEE
Q 011978 361 -----------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR--LLLSGSKDSTLK 427 (473)
Q Consensus 361 -----------~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~--~l~s~s~Dg~i~ 427 (473)
-..-.++|+|.-+-++-...-+.+.++|++-..++....-..+.+.-+.|-|+++ .|.+.-.||.+.
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 0122367899776666666778899999998888888776677777788888775 688899999999
Q ss_pred EEECC
Q 011978 428 VWDIR 432 (473)
Q Consensus 428 iwd~~ 432 (473)
+|-.+
T Consensus 300 irvrk 304 (1062)
T KOG1912|consen 300 IRVRK 304 (1062)
T ss_pred EEEee
Confidence 99544
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.9e-06 Score=73.91 Aligned_cols=114 Identities=19% Similarity=0.317 Sum_probs=80.6
Q ss_pred cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc---eEEEeeCCc-----cCEEEEEEecCC-CEEEEEeCCCcEE
Q 011978 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHV-----GPVYQISWSADS-RLLLSGSKDSTLK 427 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~---~~~~~~~h~-----~~v~~v~~sp~g-~~l~s~s~Dg~i~ 427 (473)
..|...++++.|..|.+.++++. |=.|.+|++.-.. .+.-++.|. ..|++..|+|.. +.+.-.+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 56888899999999999888864 5679999876432 122334443 468899999964 4455566789999
Q ss_pred EEECCCCce------ee--ccc--------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 428 VWDIRTQKL------KQ--DLP--------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 428 iwd~~~~~~------~~--~~~--------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+-|++...+ +. .+. +-.+.|..+.|++.|+++++-+. -+++||+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 999983211 11 111 12246888999999999988766 5789996
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=2e-07 Score=80.94 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=100.7
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~ 180 (473)
.++.|.++.|...+..++.|+..|.|..+|+..+ .+.. .-.|...|+||..-. ++++|++.+.+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5567999999999999999999999999999754 2222 335888899988766 78899999999999999987
Q ss_pred CCcc--ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978 181 TGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 181 ~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~ 238 (473)
--+. ......|| |+..+..|.+..+....+++++.|...|||.+..+..+.+++-
T Consensus 330 ~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhhcccceeeeecc---cccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4332 12234455 5566667777777778889999999999999999888776653
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.51 E-value=9.2e-05 Score=75.30 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=55.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
+.|.++.|.-++..++.+..+|.|.+-|.++..-. ....-.++|.+++||||++.++..+..+++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 68999999999999999999999999888765422 122235789999999999999988888887664
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.44 E-value=0.0008 Score=57.90 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=35.4
Q ss_pred CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc
Q 011978 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 441 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 441 (473)
....|..+..||||+.||+...+|.|.+|++.+.+.+..+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 45689999999999999999999999999998876655544
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-06 Score=77.90 Aligned_cols=209 Identities=18% Similarity=0.186 Sum_probs=137.5
Q ss_pred cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---CeEEEEecCccccEEEEEecCCCeE-EEeec-CCeEEEE
Q 011978 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDGVI-YTGSQ-DCTIKVW 266 (473)
Q Consensus 192 ~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l-~s~~~-d~~i~~w 266 (473)
|.+.|+.+... ....+++++.||.++.|--.. -+.+..+..|...|.+++.+-++.+ .+.+. |..++++
T Consensus 8 hrd~i~hv~~t------ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPT------KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeee------hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 55556554321 235788999999999997543 2344556678888888888888864 46566 9999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC-CceEEEecCCceEEEEe
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA-PERLVSGSDDFTMFLWE 345 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd 345 (473)
|+++-..+.-++.. .-|... ..... .+.. ....++.-+++.+.++|
T Consensus 82 DvEn~DminmiKL~--------~lPg~a---~wv~s----------------------kGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 82 DVENFDMINMIKLV--------DLPGFA---EWVTS----------------------KGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred Eeeccchhhhcccc--------cCCCce---EEecC----------------------CCCeeeeEEeecccCCCcEEEC
Confidence 98764433211110 000000 00000 0000 01233445678889998
Q ss_pred CCCCCC-CeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC------Cce---------EEEeeCCccCEEEEE
Q 011978 346 PAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT------GKF---------VAVFRGHVGPVYQIS 409 (473)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~------~~~---------~~~~~~h~~~v~~v~ 409 (473)
...... ......-|...|.++.+.|-+..+.+....|.|.-|.... .+. +..+........++.
T Consensus 129 ~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 129 GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred CcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 765543 3334455888999999999999999998899999998762 111 111222345678999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeec
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQD 439 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~ 439 (473)
|+|+|..+.+-+.|..|++++..+++..+.
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999999999999999999998876544
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.4e-05 Score=69.80 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=68.8
Q ss_pred ccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeC
Q 011978 102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP 179 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~ 179 (473)
..+.+|...|..++|||..+ ++..++-++.|+|.|+++......+..| ..+++++|.-|. .+|+.|..+|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 35678999999999999988 6778899999999999998877777777 789999998765 46777888999999999
Q ss_pred CCCc
Q 011978 180 QTGK 183 (473)
Q Consensus 180 ~~~~ 183 (473)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 7654
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=0.00093 Score=65.54 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=153.5
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC------CEE--EEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC-
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS- 190 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~------~v~--~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 190 (473)
+..++.++.++.+.-.|..+++.+........ .+. .+... ++..++.++.++.|+-+|.++|+..-....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777889999999999887766542221 010 01111 226788888999999999999986543211
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEee---------CCCcEEEEECCCCeEEEEecCccc--------------------
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL-------------------- 241 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s---------~dg~i~iwd~~~~~~~~~~~~h~~-------------------- 241 (473)
.+...-..+.-.|... ...++.++ .++.+.-.|..+++.+........
T Consensus 140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 1100001111122111 13344443 367888889999988766532110
Q ss_pred cEE-EEEecC-CCeEEEeecCC------------------eEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 242 AVT-CVKWGG-DGVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 242 ~v~-~~~~~~-~~~l~s~~~d~------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
.+. ...++. .+.++.++.++ .+.-.|..+|+.....+........+.....-.+...
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~--- 293 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI--- 293 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec---
Confidence 011 123332 45677776554 6888888888887765421111100000000000000
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE---
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--- 378 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg--- 378 (473)
..+.+.....++.++.++.+...|...++........ ...++.+| ..+..+
T Consensus 294 --------------------~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~ 347 (488)
T cd00216 294 --------------------KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFH 347 (488)
T ss_pred --------------------cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcccc
Confidence 0001111124677888899988887766543322111 11233444 222222
Q ss_pred ---------------ECCCcEEEEeCCCCceEEEeeCCc--------cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 379 ---------------SFDKSIKLWNGTTGKFVAVFRGHV--------GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 379 ---------------s~d~~v~lwd~~~~~~~~~~~~h~--------~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
..+|.+.-.|..+|+.+-...... .+...-.....+..|+.++.||.++.+|..+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence 235678888888888765544220 111110111256788888999999999999998
Q ss_pred eeeccc
Q 011978 436 LKQDLP 441 (473)
Q Consensus 436 ~~~~~~ 441 (473)
.+-+.+
T Consensus 428 ~lW~~~ 433 (488)
T cd00216 428 ELWKFR 433 (488)
T ss_pred eeeEEE
Confidence 865543
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=4.3e-07 Score=88.35 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=106.6
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--eEEEe
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCW 177 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--~i~iw 177 (473)
....+..|+..-+|++|+-+.++|+.|+-.|.|++|++.+|.......+|..+|+-+.=+.||..+++.+... -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3456778999999999999999999999999999999999988888889999999999999998877665443 36889
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecC---ccccEEEEEecCCCe
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSG---HTLAVTCVKWGGDGV 253 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~---h~~~v~~~~~~~~~~ 253 (473)
+...--.....+. .-.++.|+.. ...-+.|.......+||+.++..+.+ +.+ ....-.++.|+|...
T Consensus 1173 ~~~s~~~~~Hsf~----ed~~vkFsn~-----~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNS-----LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccccccCcccccc----ccceeehhhh-----HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 8754211111111 1223444321 11112344446788999998765544 221 122235677887654
Q ss_pred EEEeecCCeEEEEECCCCce
Q 011978 254 IYTGSQDCTIKVWETTQGKL 273 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~ 273 (473)
|+- +|| -+||++..+.
T Consensus 1244 LIl--ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1244 LIL--NDG--VLWDVRIPEA 1259 (1516)
T ss_pred eEe--eCc--eeeeeccHHH
Confidence 332 333 3587765433
No 314
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.00061 Score=60.42 Aligned_cols=209 Identities=14% Similarity=0.239 Sum_probs=119.7
Q ss_pred CCcEEEEECCCCeE---EEEecCccccEEEEEecCCC-eEEEeec---CCeEEEEECCC--Ccee--eeeeccCceEEEE
Q 011978 219 DGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQ--GKLI--RELKGHGHWVNSL 287 (473)
Q Consensus 219 dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~l~s~~~---d~~i~~wd~~~--~~~~--~~~~~~~~~v~~~ 287 (473)
..-|.+|++.+... ...+..+....+-++|++++ .|+++-. +|.|..|.+.. |++. ......+.+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45688888764321 12233456678889999988 5776643 46676665543 4432 1111122222334
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCC--CeeeecCcccc--
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQ--PKTRMTGHQQL-- 362 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~-- 362 (473)
+++++.. .++++. ..+.+.++.+..... ....+..|...
T Consensus 95 svd~~g~------------------------------------~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 95 SVDEDGR------------------------------------FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred EECCCCC------------------------------------EEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 4443321 222222 234455554322111 11111122222
Q ss_pred --------eeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEE----eeCCccCEEEEEEecCCCEEEEEeC-CCcEEE
Q 011978 363 --------VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAV----FRGHVGPVYQISWSADSRLLLSGSK-DSTLKV 428 (473)
Q Consensus 363 --------v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~----~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~i 428 (473)
+....|.|++++|++.... -.|.+|++..|++... ++ ....-.-+.|+|++++...... +++|.+
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 6678899999999988642 2699999998765322 22 2234577999999998877664 899999
Q ss_pred EECCC--Cce--eecc---cc---cCCCEEEEEEeeCCCEEEEEeC
Q 011978 429 WDIRT--QKL--KQDL---PG---HADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 429 wd~~~--~~~--~~~~---~~---h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
|.... ++. ++++ +. ......++..++||++|..+..
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 99876 332 2222 11 1235668899999999976643
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=2e-05 Score=77.49 Aligned_cols=189 Identities=13% Similarity=0.208 Sum_probs=120.7
Q ss_pred CceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEe
Q 011978 210 CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (473)
Q Consensus 210 ~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 289 (473)
...++.|+-...+..+|+++.+......-....|+-+..+ +..+++|...|+|.+-|..+-+.++++..|...|..+.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 3467777777777888888776555443222234444433 235778888888888888887777777766655544433
Q ss_pred cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC
Q 011978 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369 (473)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s 369 (473)
.. +.|++++......
T Consensus 226 ~G--------------------------------------NlLitCG~S~R~~--------------------------- 240 (1118)
T KOG1275|consen 226 QG--------------------------------------NLLITCGYSMRRY--------------------------- 240 (1118)
T ss_pred cC--------------------------------------CeEEEeecccccc---------------------------
Confidence 21 1233333221100
Q ss_pred CCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecC-CCEEEEEeCCCcEEEEECCC---Cce-eecccccC
Q 011978 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD-SRLLLSGSKDSTLKVWDIRT---QKL-KQDLPGHA 444 (473)
Q Consensus 370 p~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~Dg~i~iwd~~~---~~~-~~~~~~h~ 444 (473)
.+ -.|.-|+|||++..+.+.-+.-+.++ .=+.|.|. ...++++|..|...+-|..+ ... ..-+....
T Consensus 241 ----~l---~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 241 ----NL---AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG 312 (1118)
T ss_pred ----cc---cccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence 00 13677999999988766655555554 34677774 35788888899999988432 111 11122223
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 445 DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+.++++|+.|+.||.|..+|.|.+|.
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CcceeEEecCCCceEEEecccCcEeeec
Confidence 4589999999999999999999999995
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.00028 Score=71.99 Aligned_cols=108 Identities=17% Similarity=0.366 Sum_probs=75.7
Q ss_pred eEEEECCCCcEEEEEE-----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe---CCCcEEEEECCC--
Q 011978 364 NHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS---KDSTLKVWDIRT-- 433 (473)
Q Consensus 364 ~~v~~sp~g~~lasgs-----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s---~Dg~i~iwd~~~-- 433 (473)
.+|.|--||+++|+.. ..+.|++||.+ |.+-.+-+...+-=.+++|-|.|..+|+-. .|+.|.+|.-+.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 4688999999999843 33789999977 543222222333446799999999998753 466799997654
Q ss_pred -CceeecccccCCCEEEEEEeeCCCEEEE---EeCCCcEEecc
Q 011978 434 -QKLKQDLPGHADEVFAVDWSPDGEKVAS---GGKDRVLKLWM 472 (473)
Q Consensus 434 -~~~~~~~~~h~~~i~~l~~s~d~~~l~s---~~~D~~i~~w~ 472 (473)
+...-.++....++..++|+.++..||. ......|++|.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 2222233333445899999999999988 55566799995
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=4.3e-05 Score=72.05 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=63.3
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
.....|.|++++|+.+.|+.|+.||+|.+||...+... .....-....++|+|+|..+++|+..|.+.+||..-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999999998766432 2233455788999999999999999999999997543
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.20 E-value=4.2e-05 Score=75.28 Aligned_cols=182 Identities=14% Similarity=0.180 Sum_probs=119.6
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 241 (473)
+..++-|+....+..+|+++.+..... .-....+.=+.. .++.+.+|...|+|.+-|..+.+.+.++..|++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 456777777778888888876543221 111112333332 235677888899999999999999999999999
Q ss_pred cEEEEEecCCCeEEEee---------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 242 AVTCVKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
.|......++ .|++++ .|.-|+|||++.-+.+.-+.-+-.+ .
T Consensus 219 siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--------~-------------------- 269 (1118)
T KOG1275|consen 219 SISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--------Q-------------------- 269 (1118)
T ss_pred ceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--------h--------------------
Confidence 9988776644 666665 3667899999875544322111100 0
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe---eeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
+-..-..-+.+++.++..|...+-|......+. .-.......+..+++|++|+.+|.|..+|.|.+|.
T Consensus 270 --------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 --------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 000001124568888888888888854433331 11122234589999999999999999999999996
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.17 E-value=0.0043 Score=55.09 Aligned_cols=246 Identities=16% Similarity=0.173 Sum_probs=134.4
Q ss_pred EEEEEECC-CCCeEEEEecCCe-EEEeeCCCCccccccCCCcCCc-EEEEEeceeccCCCCceEEEe-----eCCCcEEE
Q 011978 153 VLCIAWSA-DGKHLVSGSKAGE-LQCWDPQTGKPSGNPLSGHKKW-ITGISWEPVHLNAPCRRFVSA-----SKDGDARI 224 (473)
Q Consensus 153 v~~l~~s~-dg~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~~~~~s~-----s~dg~i~i 224 (473)
...++.+| .+..++.+-.-|+ ..+||..+++....... ..+. .++- ..|+.++.++.+. +..|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecC----EEEcCCCCEEEEeccccCCCcEEEEE
Confidence 34567788 4455666777765 67899988875432211 1111 1110 1234466677664 34578999
Q ss_pred EECC-CCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 225 WDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 225 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
||.. .-+.+..+..|...-..+.+.+|+ .|+.+ +.| |.. +-.+|+....+.
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGG-I~T-hpd~GR~kLNl~------------------------ 134 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-NGG-IET-HPDSGRAKLNLD------------------------ 134 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-cCC-Ccc-CcccCceecChh------------------------
Confidence 9998 556677777777666677788888 44432 111 100 000111000000
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE-EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM-FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d 381 (473)
...+.....-..+|.+ --|.+. ..-|...++-+++.++|..++..-..
T Consensus 135 -----------------------tM~psL~~ld~~sG~ll~q~~Lp--------~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 135 -----------------------TMQPSLVYLDARSGALLEQVELP--------PDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred -----------------------hcCCceEEEecCCCceeeeeecC--------ccccccceeeEEecCCCcEEEEEecC
Confidence 0001111111122221 111110 02355678888888888766665443
Q ss_pred C-------cEEEEeCCCCceEEEee-------CCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccCCC
Q 011978 382 K-------SIKLWNGTTGKFVAVFR-------GHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADE 446 (473)
Q Consensus 382 ~-------~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~~ 446 (473)
| .|-+++.. +.+..+. .-.+.+-+|++++++.+++..|- -|.+.+||..+++.+....- ..
T Consensus 184 g~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D 259 (305)
T PF07433_consen 184 GDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PD 259 (305)
T ss_pred CCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cc
Confidence 3 13333322 2122221 22467899999999998877664 66899999999998766543 34
Q ss_pred EEEEEEeeCCCEEEEEeCCC
Q 011978 447 VFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 447 i~~l~~s~d~~~l~s~~~D~ 466 (473)
+..++-.+++ +++|.+...
T Consensus 260 ~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 260 ACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred eeeeeecCCc-eEEeCCCcc
Confidence 6777777666 666666544
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00028 Score=63.20 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=73.0
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 252 (473)
+++.+..+-+.. ..+.+|...|.+++|+|... ..+..++-+.+|+|.|+++..++..+..+ ..+++++|+-|.
T Consensus 175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~----GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNE----GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchh-hcccccchhhhhhccCcccc----ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 455554444433 25777888899999888532 36788999999999999999988888777 789999998654
Q ss_pred -eEEEeecCCeEEEEECCCCc
Q 011978 253 -VIYTGSQDCTIKVWETTQGK 272 (473)
Q Consensus 253 -~l~s~~~d~~i~~wd~~~~~ 272 (473)
.|++|...|.|.+||++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 69999999999999998643
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00014 Score=70.71 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCC-----CCeEEEEecCCeEEEeeCCC-CccccccCC
Q 011978 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLS 190 (473)
Q Consensus 117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 190 (473)
..+|.++++||.||+|.|-.+-+.+...... ...++.+++++|| .+++++|+..| +.++.-.= |......+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 3469999999999999999887776554432 4567999999998 67899999999 76664211 111112355
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE------EEEEecCCCeEEEeecCCeEE
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------TCVKWGGDGVIYTGSQDCTIK 264 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v------~~~~~~~~~~l~s~~~d~~i~ 264 (473)
.-.++|.++.|.. +.++-+ .|--|++||..+++.+..+......+ ..+.|.++..|+-|- ..+|+
T Consensus 158 ~~eG~I~~i~W~g-------~lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~ 228 (846)
T KOG2066|consen 158 EGEGPIHSIKWRG-------NLIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVK 228 (846)
T ss_pred cCccceEEEEecC-------cEEEEe-cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEE
Confidence 6678999999975 344444 45558999999887776554322222 246788777666554 45788
Q ss_pred EEECC
Q 011978 265 VWETT 269 (473)
Q Consensus 265 ~wd~~ 269 (473)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88776
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00031 Score=68.54 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=107.4
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+.+.|++++ ++.+|-|.-+|.|++++..... .....|... ..+|.++++|+.||+|.|-.+-+.+...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~-- 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT-- 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce--
Confidence 455666664 5789999999999999876543 222234332 4579999999999999998877665322
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC--CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
......++.+++++|.-....+++|++||..| +.++.-+ ..+....+..-.++|.++.|.++ +++.+. |-.|++|
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWan-d~Gv~vy 184 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWAN-DDGVKVY 184 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEec-CCCcEEE
Confidence 12345678899999874455678999999998 7776421 11111234455678999999854 555555 4458999
Q ss_pred ECCCCceeeeeec
Q 011978 267 ETTQGKLIRELKG 279 (473)
Q Consensus 267 d~~~~~~~~~~~~ 279 (473)
|..+++.+..+..
T Consensus 185 d~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 185 DTPTRQRLTNIPP 197 (846)
T ss_pred eccccceeeccCC
Confidence 9998877766544
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.05 E-value=0.011 Score=55.42 Aligned_cols=67 Identities=25% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCCCeEEEE---------eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 117 SPDGRQLASG---------SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 117 sp~~~~lat~---------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
|||+++++.. +..+.+.|||+++++... +......+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5788877653 234678999999875332 222245688899999999998875 579999998776543
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=4.6e-05 Score=71.84 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=61.5
Q ss_pred cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
....+.+.+++|+...++.|..||+|.+||...+... +....-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4557899999999999999999999999998766432 222344578899999999999999999999999864
No 325
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.021 Score=56.45 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEE---E-------EEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~---~-------l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+..|+.++.++.|.-.|..+++.+....... ..+. + +++ .+..++.++.|+.+.-.|.++|+..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778888888999988776653211 1111 1 122 2356788889999999999999865432
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEe
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL 236 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~ 236 (473)
.......-..+.-.|.-. ..+++.+. .+|.|.-+|.++++.+..+
T Consensus 147 ~~~~~~~~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccccccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 211110000111122211 12444443 2688999999999877654
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0015 Score=64.52 Aligned_cols=200 Identities=13% Similarity=0.156 Sum_probs=118.8
Q ss_pred CCceEEEeeCCCcEEEEECCCCeEEEEecCcccc-EEEEEecCC-CeEEEeecCC-----eEEEEECCCCc------eee
Q 011978 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD-GVIYTGSQDC-----TIKVWETTQGK------LIR 275 (473)
Q Consensus 209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~-~~l~s~~~d~-----~i~~wd~~~~~------~~~ 275 (473)
....++.|+.+|.|.+.+-. .+.+..+..+... |..+....+ ..|++-+.|+ .+++|+++.-+ ++.
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 34568889999988887632 2333445444444 333333222 3677766554 58999986431 121
Q ss_pred --eeec-----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978 276 --ELKG-----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (473)
Q Consensus 276 --~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 348 (473)
.+.. ...++..++++.+ -..+++|-.+|.|..+....
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~------------------------------------l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSED------------------------------------LKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEcc------------------------------------ccEEEEEecCcEEEEEcCcc
Confidence 1111 1222333333322 23578888899988886433
Q ss_pred CCCCe---eeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce-EEEeeCCccCEEEEEEecCCCEEEEEeCCC
Q 011978 349 SKQPK---TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSKDS 424 (473)
Q Consensus 349 ~~~~~---~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg 424 (473)
.+... ........+|+.+++..+++.++-......|.+|.+....+ ...+..|...++|..|++....+++++. .
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e 235 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-E 235 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-c
Confidence 22111 11122346799999999888744444455799999874332 4557778889999999986664555543 4
Q ss_pred cEEEEECCCCceeeccc-ccCCC
Q 011978 425 TLKVWDIRTQKLKQDLP-GHADE 446 (473)
Q Consensus 425 ~i~iwd~~~~~~~~~~~-~h~~~ 446 (473)
.+.+||....+....+. ||...
T Consensus 236 ~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred eEEEEcCCCcceeeeecCCCeEE
Confidence 69999998766655665 66543
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0025 Score=59.98 Aligned_cols=270 Identities=15% Similarity=0.140 Sum_probs=130.5
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC--
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-- 229 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-- 229 (473)
.|..+.|+++...|+.|...|.|.+|.+...+.... .-...-....+.+...+. +.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~~~~-----------~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFSLNN-----------SPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGG-----------SS-SEEE-GGG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCcccccccccC-----------CCcceEEehhhC
Confidence 478899999989999999999999997754322110 000000111111111111 1112223322
Q ss_pred ------C-eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeec--------cCceEEEEEecccce
Q 011978 230 ------R-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEYA 294 (473)
Q Consensus 230 ------~-~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~ 294 (473)
+ .....+....+.|++++.+.-|.++.|..+|.+.|.|++....+..-.. ....+.++.|..-
T Consensus 69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm-- 146 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM-- 146 (395)
T ss_dssp -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE--
T ss_pred CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE--
Confidence 1 1223334457899999998889999999999999999987776654211 1223444433210
Q ss_pred eeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC-CC-Ce----eeecCcccceeEEE-
Q 011978 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-KQ-PK----TRMTGHQQLVNHVY- 367 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~-~~----~~~~~~~~~v~~v~- 367 (473)
....|. ...-.++.|...|.+.+|.+... .. .. .....+...+..+.
T Consensus 147 --~~~~D~------------------------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~ 200 (395)
T PF08596_consen 147 --TLGGDG------------------------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP 200 (395)
T ss_dssp --E-TTSS------------------------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred --ecCCCc------------------------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence 000000 11225778888899888875321 11 10 01112334444333
Q ss_pred ECCC-C--------------------cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE-----ecCCCEEEEEe
Q 011978 368 FSPD-G--------------------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW-----SADSRLLLSGS 421 (473)
Q Consensus 368 ~sp~-g--------------------~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~-----sp~g~~l~s~s 421 (473)
|+.+ | .+++.+ .+..+|++...+.+.........-....+.+ ...+..|++-.
T Consensus 201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 201 INADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp EETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred EECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE
Confidence 3221 1 134443 3567999998888776554433223334445 23567888889
Q ss_pred CCCcEEEEECCCCceeecccccC----CCEEEEEEeeCCCEEEEEeC
Q 011978 422 KDSTLKVWDIRTQKLKQDLPGHA----DEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~~~~~~~h~----~~i~~l~~s~d~~~l~s~~~ 464 (473)
.+|.|++|.+-..+.+..+.-.. ..+....++++|..++-.|.
T Consensus 280 ~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 99999999998877665443211 12334566888887665544
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=9.7e-06 Score=79.28 Aligned_cols=187 Identities=19% Similarity=0.286 Sum_probs=118.7
Q ss_pred EEEecCccccEEEEEecCC-CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 233 VICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
...+..|....+|++|+.+ ..|+.|+..|.|+++++.+|........|+..|..+.-+.+...
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~---------------- 1157 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST---------------- 1157 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce----------------
Confidence 3456678888999999865 47899999999999999999988888888887776644333211
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCc-eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
.+.+++... -..+|+......++..+. .-.++.|+..-+.-+.|..-....+||.+
T Consensus 1158 -------------------~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1158 -------------------QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred -------------------eeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecc
Confidence 122222222 334676544333333222 23467787765555555555568999999
Q ss_pred CCceEEEe-eC---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 391 TGKFVAVF-RG---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 391 ~~~~~~~~-~~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
++..+.++ .+ .+..-+...|||+..++. .|| .+||++..+.+..+..-...+ .=.|+|.|..++--+.
T Consensus 1215 T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1215 TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE 1286 (1516)
T ss_pred cCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech
Confidence 98766552 21 122337788999888775 566 479988766555544332211 1247777777665543
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.0094 Score=50.72 Aligned_cols=135 Identities=17% Similarity=0.120 Sum_probs=78.2
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~ 200 (473)
.+++.||..+.+.--|..++....... -...+.+-+.- -|++++.|.+.|.+++.+.++|........... | .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--v---k 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--V---K 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh--h---c
Confidence 456667777777777777665443211 11222222211 367899999999999999999865432211111 1 1
Q ss_pred eceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeE
Q 011978 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTI 263 (473)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i 263 (473)
..+. ...++..+..++.|++....|.++..+++..+-....-.+-..++ ++.|+.+...|.+
T Consensus 97 ~~a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 97 VRAQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred cceE-EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 1111 123456788899999999999999988876543222222222333 4556655555544
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.93 E-value=0.0076 Score=59.19 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE--EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT--GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h 239 (473)
+..++.++.++.++-.|..+|+..-........... .+.-.+... .+..+++.++.++.|.-+|.++++.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 456777888899999999988765432111110000 000001000 01157778888999999999999988765432
Q ss_pred ccc-----EE-EEEecCCCeEEEee---------cCCeEEEEECCCCceeeeeec
Q 011978 240 TLA-----VT-CVKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 240 ~~~-----v~-~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~ 279 (473)
... +. +..+. ++.++.++ .++.+.-+|..+|+.+...+.
T Consensus 140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 210 11 11122 35555554 367889999999998876644
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=7.9e-05 Score=71.45 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=83.0
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE-EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL---- 436 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~---- 436 (473)
.+.=-+++..+++++.|+.-|.+++|+-..++... ...+..+.+.....|++..++|.|+..|.|-++.+.....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34444667789999999999999999977665432 2333455667778899999999999999999998765321
Q ss_pred -eecc-cccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 437 -KQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 437 -~~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
.... ..|...|++++|++|+..+.+|+.-|+|.+
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 1111 236789999999999999999999998754
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00039 Score=68.20 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=61.5
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
+.++.|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|.-+.||++|..++++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4568999999999999899999999987766555556899999999999999999999999999999865
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.00056 Score=68.87 Aligned_cols=143 Identities=19% Similarity=0.281 Sum_probs=97.3
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
.......++-.|++.|+.+..++.+... |..++-...+ ....++..+.
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~-------------------------------aqlt~e~tfl 547 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKF-------------------------------AQLTNEQTFL 547 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccc-------------------------------cccCCCceEE
Confidence 3445678999999999999998876543 4444322110 0112345677
Q ss_pred ecCCceEEEEeCCCCCCCee----eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 335 GSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
|-.++.++.||++....... .........+|++-+.+| +||.|+.+|.||+||--..+....+.+-..+|..|..
T Consensus 548 Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 548 GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDV 626 (794)
T ss_pred EECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEe
Confidence 88899999999987542211 112234457888877766 5899999999999994332223345666789999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEC
Q 011978 411 SADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
+.||++|+..+ +..+.+++.
T Consensus 627 t~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 627 TADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCcEEEEee-cceEEEEEE
Confidence 99999877655 556777775
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.021 Score=53.90 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=52.1
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE-----CCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc----
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-----SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV---- 402 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~-----sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~---- 402 (473)
++....+..++++.+...+...+.. ........+.+ ...+..|++-..+|.++++.+...+.+..++-..
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 4444457788888876655443333 22223333444 2356788888999999999999988877665422
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 403 GPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
..+....++++|..++-.+.. .+.++.+
T Consensus 307 ~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred ccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 234456778888877665543 3444443
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.82 E-value=6.2e-05 Score=44.23 Aligned_cols=39 Identities=41% Similarity=0.897 Sum_probs=34.5
Q ss_pred CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
+++...+..|...|.++.|++++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00015 Score=68.82 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=74.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEECCCCCeEEEEecCCeEEEeeCCCCccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~ 187 (473)
..|.-+.|+|.-..+|++..+|.+.+.-++ .+.+..+.-|...+. +++|.|||+.|+.|-.||+|++.|.+++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356778999999999999999999888877 555666665666666 999999999999999999999999998875544
Q ss_pred cCCCcCCcEEEEEece
Q 011978 188 PLSGHKKWITGISWEP 203 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~ 203 (473)
........|..+.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3344455677777753
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.78 E-value=0.026 Score=50.91 Aligned_cols=273 Identities=17% Similarity=0.155 Sum_probs=134.5
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCCcccccc-CCC-cCCcEE
Q 011978 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNP-LSG-HKKWIT 197 (473)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~~~~~~~-~~~-~~~~v~ 197 (473)
+.+.|+|..+++.+-.+.. +-.-.+..+||++.++++. ..-.|.+||.++-...... +.. |...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence 4788999888776555432 2233466899999988754 2346999999876432211 111 1110
Q ss_pred EEEece-eccCCCCceEEEe--eCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC-CCce
Q 011978 198 GISWEP-VHLNAPCRRFVSA--SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKL 273 (473)
Q Consensus 198 ~i~~~~-~~~~~~~~~~~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~ 273 (473)
.+.... ..++.++++++.. +-.-+|-+-|+..++.+..+.-. .+..+--.++..+.+-+.||++....+. .|+.
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 000000 0011112222111 11223444455555555443211 1111111233457788889988887776 4544
Q ss_pred eeeeeccCceEEEEEecccc-eee-eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 274 IRELKGHGHWVNSLALSTEY-ALR-TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
.... .. .+.++. .+. ...+. .....++--+..|.++--|+.....
T Consensus 171 ~~~~-------t~-~F~~~~dp~f~~~~~~-------------------------~~~~~~~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 171 AQKS-------TK-VFDPDDDPLFEHPAYS-------------------------RDGGRLYFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp EEEE-------EE-ESSTTTS-B-S--EEE-------------------------TTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred eEee-------cc-ccCCCCcccccccceE-------------------------CCCCeEEEEecCCEEEEEeccCCcc
Confidence 3211 01 111110 000 00000 1122344556677766665543221
Q ss_pred Cee-e---e-------cCcccceeEEEECCCCcEEEEEE---C-----CC--cEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 352 PKT-R---M-------TGHQQLVNHVYFSPDGQWVASAS---F-----DK--SIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 352 ~~~-~---~-------~~~~~~v~~v~~sp~g~~lasgs---~-----d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
... . . ....+.-.-+++++..+.|..-- . |+ .|-++|+.+++.+..+.. ..++.+++.
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~V 296 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAV 296 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEE
T ss_pred cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEE
Confidence 000 0 0 00112234478887655444432 1 22 377779999999888764 246889999
Q ss_pred ecCCC-EEEEEe-CCCcEEEEECCCCceeecccc
Q 011978 411 SADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 411 sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~ 442 (473)
+.|.+ +|++.+ .++.+.+||..+++.+.++.+
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99876 565544 578999999999998877764
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0029 Score=62.57 Aligned_cols=126 Identities=10% Similarity=0.173 Sum_probs=84.3
Q ss_pred eEEEEeCCCCCC---Ce----eeecC-----cccceeEEEECCCCcEEEEEECCCcEEEEeCC----CCceEEEeeCCcc
Q 011978 340 TMFLWEPAVSKQ---PK----TRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHVG 403 (473)
Q Consensus 340 ~i~iwd~~~~~~---~~----~~~~~-----~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~----~~~~~~~~~~h~~ 403 (473)
.+++|++..... |. .++.. .+.++.++++|.+-+.+|+|-.+|.|..+... .|..........+
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE 172 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence 589999764321 11 12222 34568899999999999999999999988532 1211111122357
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
+|+.+++..+++-++-+..-..|.+|.+.... ....+..|...+++..+++....+++++..
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence 99999999999863334445679999987443 244577777788898888766546666553
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.69 E-value=0.0096 Score=56.95 Aligned_cols=218 Identities=15% Similarity=0.213 Sum_probs=107.2
Q ss_pred CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
.......+.++|+|+.++. +.+|.-.++.....+.. ..+.-....|.+ .+.+++-...++|+|+.--
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~------~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSS------RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-T------SSEEEEE-TTS-EEEEETT
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEec------CccEEEEECCCeEEEEEcC
Confidence 3445778999999998887 56788888874332211 011122344543 2468877778888886322
Q ss_pred CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
.......+.. ...+..+- . |.++....++.|.+||..+++.++++..
T Consensus 98 ~~~~~k~i~~-~~~~~~If-~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v----------------------------- 144 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIF-G--GNLLGVKSSDFICFYDWETGKLIRRIDV----------------------------- 144 (443)
T ss_dssp EE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----------------------------
T ss_pred ccccceEEcC-CcccceEE-c--CcEEEEECCCCEEEEEhhHcceeeEEec-----------------------------
Confidence 2211111111 11222222 1 5444444555899999988877665431
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
..|..|.|+++|.++|..+.+ .+.+++
T Consensus 145 ----------------------------------------------------~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 145 ----------------------------------------------------SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -----------------------------------------------------E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ----------------------------------------------------CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 125678899999999998866 677776
Q ss_pred CCCC-----------ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978 389 GTTG-----------KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 389 ~~~~-----------~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
.... .....+..-...|.+..|..| .++.+... .++-+ ..|.. ..+..-..+++=+.+.|..+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-SS--EEEEEETTTT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEcCCceEEEEEEccCC
Confidence 5432 022222222457888888766 44444332 55552 22322 12222234677788888778
Q ss_pred EEEEEeCCCcEEec
Q 011978 458 KVASGGKDRVLKLW 471 (473)
Q Consensus 458 ~l~s~~~D~~i~~w 471 (473)
.+...+.|+.+..+
T Consensus 246 ~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 246 RLYLIDRDGNVISY 259 (443)
T ss_dssp EEEEE-TT--EEEE
T ss_pred EEEEEECCCCEEEE
Confidence 88888888877654
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.68 E-value=0.044 Score=50.49 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=53.0
Q ss_pred eeEEEECCCCcEEEEEE-----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC-------------
Q 011978 363 VNHVYFSPDGQWVASAS-----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS------------- 424 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs-----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg------------- 424 (473)
+.-=-|.|||..|..-+ .+..|.-+|+.+++.....+ ..+..-+.-++||++++.=+.|.
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE----------------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence 33346889998776533 24457777888876543322 23444556678999887644442
Q ss_pred ---cEEEEECCCCceee---------cccccCC-CEEEEEEeeCCCEEEEE-eCCCcEEecc
Q 011978 425 ---TLKVWDIRTQKLKQ---------DLPGHAD-EVFAVDWSPDGEKVASG-GKDRVLKLWM 472 (473)
Q Consensus 425 ---~i~iwd~~~~~~~~---------~~~~h~~-~i~~l~~s~d~~~l~s~-~~D~~i~~w~ 472 (473)
-|+++++..++... .+.++.. .=-...|||||++++-. ...|...||.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 45667777654321 1222211 12467999999988654 4567666653
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.66 E-value=2.4e-05 Score=73.97 Aligned_cols=198 Identities=17% Similarity=0.320 Sum_probs=113.4
Q ss_pred CCCEEEEEECCCC--CeEEEEecCCeEEEeeCCCCccc-cccCCCcCCcEEEEEeceeccCCCCceEEEe----eCCCcE
Q 011978 150 KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSA----SKDGDA 222 (473)
Q Consensus 150 ~~~v~~l~~s~dg--~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~----s~dg~i 222 (473)
...+.|++++-+. ..++.|..+|.|.+-..+...-. .....+|....++++|++.. ...++.| -.|..+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD----tn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD----TNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc----HHHHHhhhhhhcccCCc
Confidence 3457777776543 46778888999998876543222 34566777788889998862 3345544 235679
Q ss_pred EEEECCCCeE----EEEecC-ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978 223 RIWDVSLRKC----VICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (473)
Q Consensus 223 ~iwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (473)
.|||+.++-. -..+.+ -.....+++|..+. .+++|...+.+.++|++....
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----------------------- 188 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----------------------- 188 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-----------------------
Confidence 9999876521 011111 11122344454333 244455555555555542100
Q ss_pred eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEE
Q 011978 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWV 375 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~l 375 (473)
....-....+..+.++| .+.|+
T Consensus 189 ---------------------------------------------------------~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 189 ---------------------------------------------------------SVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ---------------------------------------------------------hhhhhhhhhcccceecCCCCCce
Confidence 00001122355567788 77888
Q ss_pred EEEECCCcEEEEe-CCCCc-eEEEeeCCcc----CEEEEEEecCCC-EEEEEeC-CCcEEEEECC
Q 011978 376 ASASFDKSIKLWN-GTTGK-FVAVFRGHVG----PVYQISWSADSR-LLLSGSK-DSTLKVWDIR 432 (473)
Q Consensus 376 asgs~d~~v~lwd-~~~~~-~~~~~~~h~~----~v~~v~~sp~g~-~l~s~s~-Dg~i~iwd~~ 432 (473)
++-. ||.|-+|| .+.-+ ++..+..... .+..++|+|... .+++.+. .++|+++|+.
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8766 89999999 33322 2222221122 488999999543 4555554 5689999985
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0004 Score=65.97 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=74.9
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE-EEEEecCCCEEEEEeCCCcEEEEECCCCceeec-
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY-QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD- 439 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~- 439 (473)
.+.-+.|+|.-.+||++..+|.|-+.... .+.+.++.-|...++ +++|.|||+.||.|=.||+|++-|+.++..+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 46678899999999999999999888877 666777776666677 999999999999999999999999998766554
Q ss_pred ccccCCCEEEEEEee
Q 011978 440 LPGHADEVFAVDWSP 454 (473)
Q Consensus 440 ~~~h~~~i~~l~~s~ 454 (473)
...-...|...-|++
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 223445777888863
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00014 Score=71.21 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=83.3
Q ss_pred EEEECCCCcEEEEEEC----CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 365 HVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~----d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
-..|+|...++|.++. .|+|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 3578999999988874 47888873 45554322111 112567999999889999988999999998877665556
Q ss_pred cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 441 PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 441 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..|..+|..+.||++|..|++++.-|.+.+|.
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 67899999999999999999999999999995
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.56 E-value=0.07 Score=52.38 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=71.6
Q ss_pred ECCCCcEEEEEECCCcEEEEeCCC----C-ceEEEeeCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCce-----
Q 011978 368 FSPDGQWVASASFDKSIKLWNGTT----G-KFVAVFRGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKL----- 436 (473)
Q Consensus 368 ~sp~g~~lasgs~d~~v~lwd~~~----~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~----- 436 (473)
+.++|++...+ ++.|.+.|..+ + +.+..+.- ......+.+||||+++++++. +.+|-|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 34577776653 57899999988 3 44444432 234677999999998887765 88999999987542
Q ss_pred -------eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 437 -------KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 437 -------~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+..-..+ -...+|.++|+.+.|.--|..|-.|+
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEe
Confidence 122221122 24678999999999999999999996
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.54 E-value=0.00033 Score=40.89 Aligned_cols=37 Identities=38% Similarity=0.609 Sum_probs=32.2
Q ss_pred eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
+...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445567888999999999999999999999999996
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.53 E-value=0.019 Score=56.21 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=81.1
Q ss_pred EECCCCCeEEEEe-CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC----eEEEeeCCCCccccccC
Q 011978 115 AFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG----ELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 115 ~~sp~~~~lat~s-~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 189 (473)
=++|||+.+...+ ..+.+.+.|.++.+....+.--. .-.-++++|||+++++.+.+. ++..-+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~--------- 268 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--------- 268 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc---------
Confidence 3677887764333 45778888988766555543222 235678999999998887532 12222211
Q ss_pred CCcCCcEEEEEece-eccCCCCceEEEeeCCCcEEEEECCC-----CeEEEEecCccccEEEEEecCCCe--EEEeecCC
Q 011978 190 SGHKKWITGISWEP-VHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDC 261 (473)
Q Consensus 190 ~~~~~~v~~i~~~~-~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~ 261 (473)
-...+..+.|.. .....+++.... .++.|.+.|..+ .+.+..+. -......+.++|||. ++++..+.
T Consensus 269 --e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 269 --ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred --cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCC
Confidence 111122222111 011122222222 356799999887 33333332 233456688899984 55677899
Q ss_pred eEEEEECCCCc
Q 011978 262 TIKVWETTQGK 272 (473)
Q Consensus 262 ~i~~wd~~~~~ 272 (473)
++.+.|+.+.+
T Consensus 344 tVSVIDv~k~k 354 (635)
T PRK02888 344 TVTVIDVRKLD 354 (635)
T ss_pred cEEEEEChhhh
Confidence 99999987643
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00064 Score=65.49 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=93.8
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce---EEE--e-eCCc
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF---VAV--F-RGHV 402 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~---~~~--~-~~h~ 402 (473)
.+.++.|+.-|.++++....+.....+..+....+....+|++..++|.|+..|.|.++-+..+.. ... + +.|.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 456888999999999986655544444444555677788999999999999999999997765321 111 1 2377
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce---eecccccCCCEEEEEEeeCCCEEEE
Q 011978 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ-KL---KQDLPGHADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~-~~---~~~~~~h~~~i~~l~~s~d~~~l~s 461 (473)
..|++++|++|+..+++|...|.|..-.+.+. .. .+.+-.....|..+++.. +..|++
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVS 186 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVS 186 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHh
Confidence 89999999999999999999999988877661 11 122333446777887653 334443
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.011 Score=56.39 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=70.6
Q ss_pred eEEEecCCceE--EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCE
Q 011978 331 RLVSGSDDFTM--FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPV 405 (473)
Q Consensus 331 ~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v 405 (473)
.+++...|+.. ++.|+.... ..++....+.-..-.|+|||++|+..+.. | .|.+.|.+.+... .+....+.-
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~ 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGN 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCC
Confidence 45566666654 445554433 22233333333356799999999987754 3 3666676655542 222222222
Q ss_pred EEEEEecCCCEEEEEeC-CCc--EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 406 YQISWSADSRLLLSGSK-DST--LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~s~-Dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
..-.|||||++|+..+. +|. |.+.|+.++...+.+. +......-+|.++|+.+...
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 26789999999888774 344 6666666554333332 12222344566666665543
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.39 E-value=0.0058 Score=61.84 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=67.0
Q ss_pred EEEEEECCCcEEEEeCCCC-ceEEEeeC----CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE
Q 011978 374 WVASASFDKSIKLWNGTTG-KFVAVFRG----HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 448 (473)
Q Consensus 374 ~lasgs~d~~v~lwd~~~~-~~~~~~~~----h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~ 448 (473)
-...|-.++.+..||.+-. ..+..-.. .....+|++-+.+| +||.||.+|.||+||--..+....+++-.++|.
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCee
Confidence 3455667788999998853 22211111 23346677766666 789999999999999654445567888889999
Q ss_pred EEEEeeCCCEEEEEeCCCcE
Q 011978 449 AVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 449 ~l~~s~d~~~l~s~~~D~~i 468 (473)
+|+.+.||+|++..+....+
T Consensus 623 ~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 623 GIDVTADGKWILATCKTYLL 642 (794)
T ss_pred EEEecCCCcEEEEeecceEE
Confidence 99999999998776665443
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.16 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=42.1
Q ss_pred ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
++.+....+....++.+.+.+....+. +. ..+++..++.||+|++||.-..+|.+.+....-.+..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence 444555555545555555433222111 11 2468999999999999999999999998876544433
No 351
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.30 E-value=0.16 Score=47.94 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=54.2
Q ss_pred ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC----EEEEEEecC--------------CCEE
Q 011978 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP----VYQISWSAD--------------SRLL 417 (473)
Q Consensus 356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~--------------g~~l 417 (473)
+......+.+++.+|++++.|+...=|.|.|+|+.++..++.++|-.+. +....-... ..+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3344556889999999999998877799999999999888877764332 111111110 1122
Q ss_pred -EEEeCCCcEEEEECCCCcee
Q 011978 418 -LSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 418 -~s~s~Dg~i~iwd~~~~~~~ 437 (473)
+-+-.-|.|.||+++.+..+
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 23456778888888776543
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.005 Score=57.67 Aligned_cols=146 Identities=16% Similarity=0.314 Sum_probs=97.2
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+.++..-..++-.|++.|+.+..++.+.. |+-+.+.|+.... ...++.-+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~-----------------------------Ql~~e~Tl 398 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFA-----------------------------QLTSEQTL 398 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchh-----------------------------cccccccE
Confidence 44666777888889999999988877665 5555555442210 01133455
Q ss_pred EecCCceEEEEeCCCCCCCe-eeecCc----ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978 334 SGSDDFTMFLWEPAVSKQPK-TRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~-~~~~~~----~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v 408 (473)
.|-.|..++-||++...... ....+| .....|.+-..+| +||.||.+|.||+||--....-..+.+-..+|..|
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 67778899999987554321 112222 2345666655554 79999999999999973222334567777899999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEC
Q 011978 409 SWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 409 ~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
..+.||++|+..+ +..+.+-+.
T Consensus 478 dvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 478 DVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred EeeccCcEEEEec-ccEEEEEEE
Confidence 9999999887554 566666664
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.19 E-value=0.23 Score=47.66 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=75.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
....++++|+|+.++. ++||...||.....+.... +.-....|.+.+ .+|+-..+++|.++.--+.+......
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence 3567899999999888 5778888887443333222 223457788855 56666668889996322221111111
Q ss_pred CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (473)
Q Consensus 190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~ 268 (473)
..+ .+..+-. + .++....++.|.+||+.+++.+..+.-. +|..+.|++++.+++-..+.++.+++.
T Consensus 107 ~~~--~~~~If~--------G-~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 107 LPF--SVEKIFG--------G-NLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp -SS---EEEEE---------S-SSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred CCc--ccceEEc--------C-cEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 111 1222211 2 3444445558999999999998887533 488999999986666555667777764
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.14 E-value=0.041 Score=40.75 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=65.3
Q ss_pred eeEEEECC---CC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 363 VNHVYFSP---DG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 363 v~~v~~sp---~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
|+++++.. || +.|+.||.|..||+|+-. +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-.. .+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 45555544 32 579999999999999744 56666654 457888877666 5677788899999997643 222
Q ss_pred cccccCCCEEEEEEee-C--C-CEEEEEeCCCcEE
Q 011978 439 DLPGHADEVFAVDWSP-D--G-EKVASGGKDRVLK 469 (473)
Q Consensus 439 ~~~~h~~~i~~l~~s~-d--~-~~l~s~~~D~~i~ 469 (473)
.++... .++++.+.. + | ..|++|=.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333322 355554432 2 2 2688888888764
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.12 E-value=0.00013 Score=69.14 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=100.8
Q ss_pred ccccCCcccEEEEEECCC-CCeEEEEe----CCCeEEEEeCCCC--cee--EEEc-CCCCCEEEEEECCCCCeEEEEecC
Q 011978 102 ATIAGHTEAVLSVAFSPD-GRQLASGS----GDTTVRLWDLNTQ--TPM--FKCT-GHKNWVLCIAWSADGKHLVSGSKA 171 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~-~~~lat~s----~d~~i~iwd~~~~--~~~--~~~~-~~~~~v~~l~~s~dg~~l~s~~~d 171 (473)
....+|....++++|++- ..+||+|- .|..+.|||+.++ .|. ..+. +......+++|-.|.+.+++|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 345678889999999984 45666662 4678999999876 222 1122 244556688999888888999888
Q ss_pred CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC-CCCeE-EEEec----CccccEEE
Q 011978 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKC-VICLS----GHTLAVTC 245 (473)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~-~~~~~-~~~~~----~h~~~v~~ 245 (473)
..+.++|++..-.... .-.++.+.++...|... +++++ ..||.+.+||. ..-+- +..+. .....+..
T Consensus 176 r~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~----nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSP----NYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred chhhhhhhhhhhhhhh--hhhhhhcccceecCCCC----Cceec-cccCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 8999999863321111 11233445555555322 34544 44999999993 32221 11111 11124777
Q ss_pred EEecC--CCeEEEeecC-CeEEEEECC
Q 011978 246 VKWGG--DGVIYTGSQD-CTIKVWETT 269 (473)
Q Consensus 246 ~~~~~--~~~l~s~~~d-~~i~~wd~~ 269 (473)
++|.| .|.+++...| ++|+++|..
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEeccc
Confidence 88876 4677777655 689999864
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0015 Score=66.02 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCcEEEEEECCCcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC---
Q 011978 371 DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE--- 446 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~--- 446 (473)
.+..++.|++.|.+-..|.... ++...=..-.++|++++|+.||+.++.|-.+|.|.+||+..++..+.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567888988888888886642 111111223579999999999999999999999999999998888777666554
Q ss_pred EEEEEEeeCCCEEEEEeCCCc
Q 011978 447 VFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 447 i~~l~~s~d~~~l~s~~~D~~ 467 (473)
|..+.|..++..+.+++..|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 445567777777888888775
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0053 Score=58.43 Aligned_cols=120 Identities=23% Similarity=0.373 Sum_probs=74.3
Q ss_pred ceEEEEeCCCCCCCeee-ecCcccceeEEEECCCCcEEEEEE-CCCc--EEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 339 FTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASAS-FDKS--IKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~lasgs-~d~~--v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
..++++++.....+... ..++ -..-+|+|||+.|+-.+ .||. |.+.|+..+.... +..-.+.-..=.|+|||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCC
Confidence 45777777665544322 2222 23457999999888654 4554 6667877766333 44333333467899999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 415 RLLLSGSK-DS--TLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 415 ~~l~s~s~-Dg--~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
+.|+-.|. .| .|.++|+..+... .+..+.... .-.|||||++|+..+.
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESS 345 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEec
Confidence 98887664 44 4667777665432 222222222 6689999999988774
No 358
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.0019 Score=53.87 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=69.1
Q ss_pred CCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccCE-EEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCE
Q 011978 371 DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPV-YQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEV 447 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~v-~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i 447 (473)
-+.-+++|+.+|.|++|+... +.....+..-...| .-+.--.++.+..+++.||.|+.|++...+......+|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999998762 11111111111122 222223355688889999999999999988887777776 556
Q ss_pred EEEEEeeCCCEEEEE--eCCCcEEecc
Q 011978 448 FAVDWSPDGEKVASG--GKDRVLKLWM 472 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~--~~D~~i~~w~ 472 (473)
..+..+..++.++++ |.|..++.|.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcc
Confidence 566666667788888 8888888885
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.32 Score=46.56 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=46.5
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
+.+..+++||+|++||.-..+|.+.+.+..-.+.+..+.-. ......+.|.-++..++.- ...+.+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 56899999999999999999999999876655555555433 3456677787654433322 33455544
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.05 E-value=0.03 Score=41.45 Aligned_cols=99 Identities=21% Similarity=0.336 Sum_probs=58.5
Q ss_pred EEEEEECC---CC-CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 153 VLCIAWSA---DG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 153 v~~l~~s~---dg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
|++|++.. || +.|+.|+.|..|++|+-..-. . .... ...|+.+.-. ...+|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--~-Ei~e-~~~v~~L~~~------~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--A-EITE-TDKVTSLCSL------GGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--E-EEec-ccceEEEEEc------CCCEEEEEecCCEEEEEeCc
Confidence 55666543 33 589999999999999754321 1 1111 2334444322 23579999999999988753
Q ss_pred CCeEEEEecCccccEEEEEe---cCCC--eEEEeecCCeEE
Q 011978 229 LRKCVICLSGHTLAVTCVKW---GGDG--VIYTGSQDCTIK 264 (473)
Q Consensus 229 ~~~~~~~~~~h~~~v~~~~~---~~~~--~l~s~~~d~~i~ 264 (473)
.+ +...+... .+.++.+ +.|| .|++|-.+|.|-
T Consensus 72 ~R--lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QR--LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ce--eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 22222222 2455443 3445 588898888764
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.19 Score=43.12 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=46.8
Q ss_pred EECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
...+++..+..|+.|++.+.-|..+...+.+.+.......+-+..|-...|+.+...|.+.--+.++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 4567899999999999999999999888877665444444455556334566666666665544443
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.97 E-value=0.0024 Score=59.94 Aligned_cols=95 Identities=28% Similarity=0.388 Sum_probs=63.0
Q ss_pred CCCCcEEEEEE---------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-
Q 011978 369 SPDGQWVASAS---------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ- 438 (473)
Q Consensus 369 sp~g~~lasgs---------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~- 438 (473)
|||+++++... ..+.+.++|+.+++....... ...+....|||+|+.+|-.. ++.|++++..+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777776632 245789999999876544433 56788999999999999886 6789999987664332
Q ss_pred ccccc----------------CCCEEEEEEeeCCCEEEEEeCC
Q 011978 439 DLPGH----------------ADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 439 ~~~~h----------------~~~i~~l~~s~d~~~l~s~~~D 465 (473)
+..|. -+.-.++-|||||++||...-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 22220 0112468899999999987654
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.90 E-value=0.26 Score=43.19 Aligned_cols=197 Identities=15% Similarity=0.217 Sum_probs=96.3
Q ss_pred EecCccccEEEEEecCC-CeEE-EeecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 235 CLSGHTLAVTCVKWGGD-GVIY-TGSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 235 ~~~~h~~~v~~~~~~~~-~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
.+.+-...++.++|+++ +.|+ .....+.|.-.+. +|+.++.+...+ .....+++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-------------------- 74 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-------------------- 74 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--------------------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--------------------
Confidence 34555667999999986 4454 4566778877775 577777654432 2233333221
Q ss_pred HHHHHHHhhhhcccCCCCceEEE-ecCCceEEEEeCCCCCCC--ee-----ee---cCcccceeEEEECCCCcEEEEEEC
Q 011978 312 EMKKAALERYNKIKGNAPERLVS-GSDDFTMFLWEPAVSKQP--KT-----RM---TGHQQLVNHVYFSPDGQWVASASF 380 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~--~~-----~~---~~~~~~v~~v~~sp~g~~lasgs~ 380 (473)
+..++. .-.++.+.+.+....... .. .+ ..+...+..++|+|.++.|..+-.
T Consensus 75 -----------------~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 75 -----------------NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp -----------------TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred -----------------CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 122333 333666776665322111 10 01 123345889999998777777777
Q ss_pred CCcEEEEeCCC---CceEEEe--------eCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceee--cccc--c-
Q 011978 381 DKSIKLWNGTT---GKFVAVF--------RGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQ--DLPG--H- 443 (473)
Q Consensus 381 d~~v~lwd~~~---~~~~~~~--------~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~--~~~~--h- 443 (473)
..-.++|.... ...+... .....-+.+++++|.. ++++....+..|.++|. .|+.+. .+.. |
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHG 216 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccC
Confidence 66666666543 2221111 1123457899999964 55666666778888984 455433 2222 1
Q ss_pred ----CCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 444 ----ADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 444 ----~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
-..--.++|.++|+..++. +-+...+|
T Consensus 217 l~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 217 LSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 1245689999999765554 44544443
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.80 E-value=0.013 Score=58.47 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=64.6
Q ss_pred cceeEEEECCCCcEEEEEE------CCC--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---------
Q 011978 361 QLVNHVYFSPDGQWVASAS------FDK--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD--------- 423 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs------~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D--------- 423 (473)
..+.+.+++|+|+.+|... .|. .+.+++. .+.......+. ..+.-.|+|||..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999888765 244 4555554 23332333333 37788999999877776532
Q ss_pred ---CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 424 ---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 424 ---g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
+.+.+.++..+.... .....|..+.|||||+.++.... ++|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 233333444443322 22346999999999999987663 55443
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.75 E-value=0.4 Score=43.19 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=82.8
Q ss_pred CCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc--------
Q 011978 118 PDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-------- 188 (473)
Q Consensus 118 p~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-------- 188 (473)
..++.|+.|..+| +.+++... ..+.... +...|..+...|+-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999988 89999832 2222222 233499999999877777665 499999998653322100
Q ss_pred -----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-----eEEEEecCccccEEEEEecCCCeEEEee
Q 011978 189 -----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (473)
Q Consensus 189 -----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~l~s~~ 258 (473)
.......+...+ ..........+.....+++.+|..... +....+. -...+.+++|.++ .++.|.
T Consensus 81 ~~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGT 155 (275)
T ss_pred ccccccccccCCeeEEe---eccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEe
Confidence 001111122222 111112334555566668888877542 2333332 2356788888844 444454
Q ss_pred cCCeEEEEECCCCce
Q 011978 259 QDCTIKVWETTQGKL 273 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~ 273 (473)
. +...+.|+.++..
T Consensus 156 ~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 156 S-KGFYLIDLNTGSP 169 (275)
T ss_pred C-CceEEEecCCCCc
Confidence 3 4467778876654
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.75 E-value=0.69 Score=45.90 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=65.8
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEE-Ee--ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI-SW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~--~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~ 238 (473)
+..|+.++.++.|+-.|..+|+..-.....-...+... .. ..........+++.++.|+.+.-.|..+++.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 44677777778888888888875433211100001000 00 0000001124677788899999999999988765432
Q ss_pred --cc--ccEEEEEecCCCeEEEee------cCCeEEEEECCCCceeeeee
Q 011978 239 --HT--LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELK 278 (473)
Q Consensus 239 --h~--~~v~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~ 278 (473)
+. ..+++.-.-.++.++.+. .+|.|.-+|.++|+.+..+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 11 112211111145666554 26899999999999887654
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.75 E-value=0.47 Score=43.91 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=73.2
Q ss_pred CceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-CceEEEee--CCccCEEEEEEecC
Q 011978 338 DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFR--GHVGPVYQISWSAD 413 (473)
Q Consensus 338 d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~~~--~h~~~v~~v~~sp~ 413 (473)
+..+.+|+..... ............+.++.. .+++|+.|...+.+.++..+. ...+..+. .....++++.|-+|
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d 183 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD 183 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC
Confidence 5788888876554 111111111224444444 466999999888888875443 23222222 23446889999877
Q ss_pred CCEEEEEeCCCcEEEEECCC-------C--ceeecccc-cCCCEEEE---EEeeC--CC------EEEEEeCCCcEEe
Q 011978 414 SRLLLSGSKDSTLKVWDIRT-------Q--KLKQDLPG-HADEVFAV---DWSPD--GE------KVASGGKDRVLKL 470 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~-------~--~~~~~~~~-h~~~i~~l---~~s~d--~~------~l~s~~~D~~i~~ 470 (473)
+..++.+..+|.+.++.... + +......- ..+.|+++ .+.|. +. .++.++.+|.|-.
T Consensus 184 ~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 77999999999999997753 1 11111111 23567776 44452 22 4888888888763
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=0.01 Score=49.65 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=72.1
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccce-eEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-cCEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV-NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVY 406 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v-~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~v~ 406 (473)
...+++|+.++.+.+|..............-...+ ..|..-.++.+..++..||.||.|+..-.+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34689999999999998652221111111111112 223333456688899999999999998888777777777 5666
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEECCC
Q 011978 407 QISWSADSRLLLSG--SKDSTLKVWDIRT 433 (473)
Q Consensus 407 ~v~~sp~g~~l~s~--s~Dg~i~iwd~~~ 433 (473)
.+..+..+.+++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777888887 8888888888764
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.53 E-value=0.11 Score=51.85 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=82.5
Q ss_pred CcccEEEEEECCCCCeEEEEe------CCC--eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-------
Q 011978 107 HTEAVLSVAFSPDGRQLASGS------GDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------- 171 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d------- 171 (473)
....+...+++|||+.+|... .|. .+.+++..... .....+. ....-.|+|||+.|++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999999987654 243 45555543222 2222222 37778999998888776532
Q ss_pred -----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEE---EECCCCeEEE----Ee-cC
Q 011978 172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKCVI----CL-SG 238 (473)
Q Consensus 172 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~i---wd~~~~~~~~----~~-~~ 238 (473)
+.+.+.++..+.... .....|..+.|+| ++.+++... ++.|.+ -....+.... .+ .+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 233333443332211 2345688899887 555665544 356655 2323333111 11 12
Q ss_pred ccccEEEEEecCCCeEEEeecCCeEEEEE
Q 011978 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267 (473)
Q Consensus 239 h~~~v~~~~~~~~~~l~s~~~d~~i~~wd 267 (473)
-...+..+.|.+++.|+.+..++...+|.
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEE
Confidence 22335778898888777666555444554
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.012 Score=59.88 Aligned_cols=97 Identities=21% Similarity=0.354 Sum_probs=68.9
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE-
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW- 410 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~- 410 (473)
++.|+..|.+...|....-.+...-..-...|++++|+.+|+.++.|-.+|.|.+||...++.++.+..|..+.+++-+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 6667777777666644322211111122467999999999999999999999999999999999888877766655544
Q ss_pred --ecCCCEEEEEeCCCcEEEEE
Q 011978 411 --SADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 411 --sp~g~~l~s~s~Dg~i~iwd 430 (473)
..++..+.++..-|. +|.
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEE
Confidence 445667777777675 554
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.32 E-value=1.1 Score=43.19 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=40.7
Q ss_pred ccEEEEEECCCCCeEEEE-eCC----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec
Q 011978 109 EAVLSVAFSPDGRQLASG-SGD----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~-s~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~ 170 (473)
..+....+||||+++|.+ +.. ..++++|+.+++.+...-... ....+.|.+|++.|+....
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEEC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEe
Confidence 344578899999998855 222 469999999987554221111 1223999999888776553
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.28 E-value=0.11 Score=50.22 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=63.0
Q ss_pred eeEEEECCCCcEEEEE-ECCC----cEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCC-----------c
Q 011978 363 VNHVYFSPDGQWVASA-SFDK----SIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDS-----------T 425 (473)
Q Consensus 363 v~~v~~sp~g~~lasg-s~d~----~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg-----------~ 425 (473)
+...++||||+++|.+ +..| .++++|+.+|+.+.. +..-. -..+.|.+|++.|+....|. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999999876 3334 599999999977643 22211 12399999988766655433 3
Q ss_pred EEEEECCCCcee--ecccccC-CC-EEEEEEeeCCCEEEEEe
Q 011978 426 LKVWDIRTQKLK--QDLPGHA-DE-VFAVDWSPDGEKVASGG 463 (473)
Q Consensus 426 i~iwd~~~~~~~--~~~~~h~-~~-i~~l~~s~d~~~l~s~~ 463 (473)
|+.|.+.+.... ..+.... .. ...+..++|+++|+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 788888765322 1222222 22 66889999999986543
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.28 E-value=0.018 Score=35.42 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=28.3
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
...|..++|+|...+||.++.||.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999884
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.24 E-value=0.021 Score=35.18 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCC
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~ 138 (473)
...|.+++|+|..++||.++.||.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3468999999999999999999999999883
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.92 Score=41.32 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred cCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCCC--Cc-----eEEEeeCCccCEEEEEEecCCCEEEEEeCCC-cEE
Q 011978 357 TGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GK-----FVAVFRGHVGPVYQISWSADSRLLLSGSKDS-TLK 427 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~--~~-----~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg-~i~ 427 (473)
..+-..-+.|+||||++.|..+.. .+.|.-|++.. +. ....+..+.+..-.++...+|++-+++-.+| .|.
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 333455678999999987777655 46777776652 21 1122223345556677777888776555554 899
Q ss_pred EEECCCCceeecccccCCCEEEEEEe-eCCCEEEEE
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASG 462 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~ 462 (473)
+|+.. ++++..+.-....+++++|- |+.+.|...
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 99988 77776665554667788875 444555433
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.10 E-value=1.2 Score=41.32 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=89.4
Q ss_pred CcEEEEECCCC----eEEEE--ecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCc-eeeeeec-cCceEEEEEecc
Q 011978 220 GDARIWDVSLR----KCVIC--LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALST 291 (473)
Q Consensus 220 g~i~iwd~~~~----~~~~~--~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-~~~~v~~~~~~~ 291 (473)
|.+.++++... ..+.. .....++|++++-- ++.++ ++..+.|.+|++...+ ....-.. ....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv-~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLV-VAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEE-EEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEE-EeecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 88999998874 12221 12345678888755 34543 4445899999988776 3332211 11233333322
Q ss_pred cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee--cCcccceeEEEEC
Q 011978 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFS 369 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~s 369 (473)
.+.++.|.....+.++............ .....++.++.|-
T Consensus 139 -------------------------------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 139 -------------------------------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp -------------------------------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred -------------------------------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 2245566555555544222111111111 1224568888888
Q ss_pred CCCcEEEEEECCCcEEEEeCCC-------C--ceEEEeeCC-ccCEEEE---EEecC--CC------EEEEEeCCCcEEE
Q 011978 370 PDGQWVASASFDKSIKLWNGTT-------G--KFVAVFRGH-VGPVYQI---SWSAD--SR------LLLSGSKDSTLKV 428 (473)
Q Consensus 370 p~g~~lasgs~d~~v~lwd~~~-------~--~~~~~~~~h-~~~v~~v---~~sp~--g~------~l~s~s~Dg~i~i 428 (473)
++++.++.+..+|.+.++.... + ++.....-| ...|+++ ++.|. +. .++.++.+|.|..
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7777999999999999987642 2 222222223 2457776 44452 22 3777888999884
Q ss_pred E
Q 011978 429 W 429 (473)
Q Consensus 429 w 429 (473)
.
T Consensus 262 l 262 (321)
T PF03178_consen 262 L 262 (321)
T ss_dssp E
T ss_pred E
Confidence 4
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.082 Score=49.93 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=90.1
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC--eE-----EEEecCCeEEEeeCCCCcc-ccccCCCcCCcE
Q 011978 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HL-----VSGSKAGELQCWDPQTGKP-SGNPLSGHKKWI 196 (473)
Q Consensus 125 t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l-----~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v 196 (473)
++.....++--|++.++.+...+-+.. |.-+.+.|+.+ +| +.|-.++.|.-||++-... .....++| ...
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k-qy~ 428 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK-QYS 428 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc-ccc
Confidence 444455677778888887776665655 77788888643 33 4466788899999863211 00011111 111
Q ss_pred EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~ 268 (473)
+.-.|+.... ....+++.||.+|.||+||-.....-..+++...+|.-+..+.+|.-+.|..+..+.+-++
T Consensus 429 ~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 429 TKNNFSCFAT-TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccccceeee-cCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1222222211 2346899999999999999633333445678888999999998997777777888877764
No 378
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.08 E-value=0.86 Score=41.26 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=60.1
Q ss_pred CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCce
Q 011978 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI-RTQKL 436 (473)
Q Consensus 358 ~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~-~~~~~ 436 (473)
.-...+..+..++||+++++++.-....-||.-.......-+.-...|.++.|+|++.+.+.+ ..|.|+.=+. ...+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 334668888899999999998776666778755433333334456789999999998876544 7787877662 11111
Q ss_pred ----eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 437 ----KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 437 ----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+..+....-.+..++|.+++...|+|+...
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 112222223488999999988877766643
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.81 E-value=1.5 Score=40.06 Aligned_cols=246 Identities=21% Similarity=0.219 Sum_probs=118.4
Q ss_pred EEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEE--cC-CCC----CEEEEEECCCCCeEEEEec--CCeE
Q 011978 114 VAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKC--TG-HKN----WVLCIAWSADGKHLVSGSK--AGEL 174 (473)
Q Consensus 114 ~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~--~~-~~~----~v~~l~~s~dg~~l~s~~~--dg~i 174 (473)
+.++||++.+++++ ..-.|.+||..+-.+.... .. |.. ....++++.||++++.... ...|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 56899999988653 2346999999987665533 22 111 1223678888888876543 4568
Q ss_pred EEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEEEe----cCccccEE-EEE
Q 011978 175 QCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICL----SGHTLAVT-CVK 247 (473)
Q Consensus 175 ~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~~~----~~h~~~v~-~~~ 247 (473)
.+-|+..++..... ..+ |...-|. ....|.+-+.||++.-..+. .|+..... .....++. .-.
T Consensus 121 tVVDl~~~kvv~ei~~PG------C~~iyP~----~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPG------CWLIYPS----GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPA 190 (342)
T ss_dssp EEEETTTTEEEEEEEGTS------EEEEEEE----ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--E
T ss_pred EEEECCCCceeeeecCCC------EEEEEec----CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccc
Confidence 88888776643221 111 1111232 12468888999998888776 34433211 11111111 111
Q ss_pred ec-CCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecc----cceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 248 WG-GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST----EYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 248 ~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
+. .++.++--+..|.|+--|+......- . ....+.. ...++.+.+..
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~-------~~~~~~t~~e~~~~WrPGG~Q~-------------------- 242 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKF-G-------KPWSLLTDAEKADGWRPGGWQL-------------------- 242 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEE-E-------EEEESS-HHHHHTTEEE-SSS---------------------
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccc-c-------CcccccCccccccCcCCcceee--------------------
Confidence 21 23345556667777766665432110 0 0000000 00111111110
Q ss_pred cccC-CCCceEEE--------ecCCceEEEE--eCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE-CCCcEEEEeC
Q 011978 323 KIKG-NAPERLVS--------GSDDFTMFLW--EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSIKLWNG 389 (473)
Q Consensus 323 ~~~~-~~~~~l~~--------~~~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs-~d~~v~lwd~ 389 (473)
+.. ....+|.. .-.|..-.+| |+...+....... ...+.+|+++.+.+ +|.+.+ .++.+.+||.
T Consensus 243 -~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 243 -IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred -eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 000 00111111 1223333444 4443332222222 23577899998765 554444 5789999999
Q ss_pred CCCceEEEeeC
Q 011978 390 TTGKFVAVFRG 400 (473)
Q Consensus 390 ~~~~~~~~~~~ 400 (473)
.+|+.+...++
T Consensus 320 ~tGk~~~~~~~ 330 (342)
T PF06433_consen 320 ATGKLVRSIEQ 330 (342)
T ss_dssp TT--EEEEE--
T ss_pred cCCcEEeehhc
Confidence 99999888764
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.72 E-value=0.52 Score=41.80 Aligned_cols=99 Identities=26% Similarity=0.315 Sum_probs=63.0
Q ss_pred ceeEEEECCCCcEEEEEE--C-CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE-CCCCcee
Q 011978 362 LVNHVYFSPDGQWVASAS--F-DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD-IRTQKLK 437 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs--~-d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd-~~~~~~~ 437 (473)
.+.+.+++++|+.+|... . ...++++..... ....+.+ ..+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 578899999999887766 2 234555543322 2222233 2678889999988877777666667763 2232221
Q ss_pred ---ecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 438 ---QDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 438 ---~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
-....-...|.++.+||||..+|...
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEE
Confidence 11221122899999999999987665
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=1.8 Score=39.44 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=43.0
Q ss_pred ccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCccCEEEEEEe-cCCCEEEEEe
Q 011978 360 QQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADSRLLLSGS 421 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g~~l~s~s 421 (473)
....-.++...+|.+-+++..+| .|..|+.+ |+++..++-....+++++|- |+.+.|...+
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 34455677788888876555554 89999988 99988888776778888884 4555544443
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.55 E-value=2.9 Score=42.02 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=52.7
Q ss_pred CCcEEEEEECCC------cEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCce-
Q 011978 371 DGQWVASASFDK------SIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKDST-----LKVWDIRTQKL- 436 (473)
Q Consensus 371 ~g~~lasgs~d~------~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~Dg~-----i~iwd~~~~~~- 436 (473)
+|...++|+.|+ ++..||..+.+.... ...-.... .++ .-++...+.|+.|+. |..||..+.+-
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 678888888654 577888887654322 11111111 122 346778888887763 77788876543
Q ss_pred -eecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 437 -KQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 437 -~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
...+......+..+ .-+++..+.||.|+.
T Consensus 505 ~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVV--VLGGKLYAVGGFDGN 534 (571)
T ss_pred EcccCccccccccEE--EECCEEEEEecccCc
Confidence 22233222222222 235677788888874
No 383
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=2.7 Score=39.94 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=88.0
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---CCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---d~~v~lwd~~~~~~~~~~~~h~~~v~~ 407 (473)
..+....+..+.+.|............+. ....++++|+++.+..+.. ++++.+.|..+.+.+.....-..+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 34555556778888754444333333333 5677999999987777665 688999999988887765443345 88
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEECCCCceee-----cccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 408 ISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQ-----DLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 408 v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~-----~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
++++|+|..++.+. .++.|.+.|.......+ .+.- ...-..+.++|||+++.....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEec
Confidence 99999999666654 78899999977655542 1111 123357889999996655443
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.22 E-value=2.1 Score=38.00 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=66.3
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEe-CCCCceEE-Eee--CCccCEEEEEEecCCCEEEEEe---CCCcEEEEECC--
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWN-GTTGKFVA-VFR--GHVGPVYQISWSADSRLLLSGS---KDSTLKVWDIR-- 432 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd-~~~~~~~~-~~~--~h~~~v~~v~~sp~g~~l~s~s---~Dg~i~iwd~~-- 432 (473)
.+..-.|++++...+....+...+++. ..++.... ... .-.+.|.++.+||||..+|... .++.|++=-+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 566678999988887777677777773 33333211 111 1112899999999999877665 35667776543
Q ss_pred -CC--ce----eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 433 -TQ--KL----KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 433 -~~--~~----~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
.+ .. ..........+.+++|.+++..++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 12 11 112223345789999999998777665443
No 385
>PHA02713 hypothetical protein; Provisional
Probab=95.05 E-value=4 Score=40.99 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCcEEEEEECCC--cEEEEeCCCCceEEEeeCCc
Q 011978 371 DGQWVASASFDK--SIKLWNGTTGKFVAVFRGHV 402 (473)
Q Consensus 371 ~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~ 402 (473)
+|+..++|+.|+ ++..||..+.+.......|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788889999888 78888888776554444443
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=2.5 Score=37.15 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=50.6
Q ss_pred EEEECCCCCe-EEEEeCCCe-EEEEeCCCCceeEEEcCCCCC--EEEEEECCCCCeEEEEecC-----CeEEEeeCCCCc
Q 011978 113 SVAFSPDGRQ-LASGSGDTT-VRLWDLNTQTPMFKCTGHKNW--VLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK 183 (473)
Q Consensus 113 ~~~~sp~~~~-lat~s~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~s~~~d-----g~i~iwd~~~~~ 183 (473)
.++|+|.-.+ ++.+-.-|+ ..++|..+.+....+...++. .-.=.|||||.+|+..-.| |.|-+||...+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4677776544 556655554 578898876654433211111 1112489999999875433 779999987542
Q ss_pred cccccCCCcCCcEEEEEece
Q 011978 184 PSGNPLSGHKKWITGISWEP 203 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~ 203 (473)
...-.+..|.-.-..+.|.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred ceecccccCCcCcceeEEec
Confidence 22222344443333444443
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.73 E-value=3 Score=37.45 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=36.6
Q ss_pred CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 161 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
.++.|+.|+.+| +++++.......... .+...|..+...|. -+.++.- .|+.+.++++..-.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~-----~~~llvL-sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE-----LNLLLVL-SDGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc-----cCEEEEE-cCCccEEEEchhhc
Confidence 467899998888 888888322221111 12223666665542 2234433 35999999986543
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=0.53 Score=41.13 Aligned_cols=96 Identities=26% Similarity=0.329 Sum_probs=64.7
Q ss_pred EECCCCcEEEEEECC-----CcEEEEeCCCC-ceEEEeeCCccCEEEEEEecCCCEEEEEeC------C-----------
Q 011978 367 YFSPDGQWVASASFD-----KSIKLWNGTTG-KFVAVFRGHVGPVYQISWSADSRLLLSGSK------D----------- 423 (473)
Q Consensus 367 ~~sp~g~~lasgs~d-----~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~------D----------- 423 (473)
.|||||++|...-.| |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.+.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 599999999887554 67999998854 445667777666788999999999887642 0
Q ss_pred -CcEEEEECCCCcee--eccc--ccCCCEEEEEEeeCCCEEEEE
Q 011978 424 -STLKVWDIRTQKLK--QDLP--GHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 424 -g~i~iwd~~~~~~~--~~~~--~h~~~i~~l~~s~d~~~l~s~ 462 (473)
-.+.+.|..++.++ .+++ .+.-+|..++..+||+..+-+
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 11233344444443 2344 344568888888888765544
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.53 E-value=1.7 Score=40.99 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=55.5
Q ss_pred eeEEEECCCCcEEEEEECCCcEEEEeCCC-----Cc--eE-EEeeC----CccCEEEEEEecCCCEEEEEeCC-------
Q 011978 363 VNHVYFSPDGQWVASASFDKSIKLWNGTT-----GK--FV-AVFRG----HVGPVYQISWSADSRLLLSGSKD------- 423 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d~~v~lwd~~~-----~~--~~-~~~~~----h~~~v~~v~~sp~g~~l~s~s~D------- 423 (473)
...+++.++| ++++ +.....++.|... ++ .+ ..+.. +......++|.|||.+.++-+..
T Consensus 74 p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~ 151 (367)
T TIGR02604 74 VTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR 151 (367)
T ss_pred ccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence 4678888888 4443 3443333434321 12 11 22322 23457889999999876654421
Q ss_pred ------------CcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 424 ------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 424 ------------g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
|.|.-+|..+++....-.++ ...+.++|+|+|+.+++-..
T Consensus 152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 44555666554443222333 34578999999988776443
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.49 E-value=7.1 Score=40.63 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcC-------CcEEEEEeceec-----------cCCCCceEEEeeCCCcEE
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-------KWITGISWEPVH-----------LNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~i~~~~~~-----------~~~~~~~~~s~s~dg~i~ 223 (473)
+..|+.++.++.|.-.|..+|+..-....... ....++.+.... ......+++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55788888889999999988876543211100 001222221100 011234777888999999
Q ss_pred EEECCCCeEEEEecCccccE----------------EEEEecCCCeEEEeec----------CCeEEEEECCCCceeeee
Q 011978 224 IWDVSLRKCVICLSGHTLAV----------------TCVKWGGDGVIYTGSQ----------DCTIKVWETTQGKLIREL 277 (473)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v----------------~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~ 277 (473)
-.|.++++....+.. ...| ++.-.--++.++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988765421 1111 1100111456666643 688999999999998776
Q ss_pred e
Q 011978 278 K 278 (473)
Q Consensus 278 ~ 278 (473)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 391
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.39 E-value=3.3 Score=36.40 Aligned_cols=162 Identities=13% Similarity=0.203 Sum_probs=80.3
Q ss_pred ccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
+.|-.+.+..++|+|+...| |+....+.|.-++.. ++.+... .+ -+-...+++..++.++++--.++.+.+.++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 44555679999999987655 455567888888865 4444433 33 2447788898888777766668999988874
Q ss_pred CCccc---------cccC-CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---CeEEE--Ee------cCc
Q 011978 181 TGKPS---------GNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVI--CL------SGH 239 (473)
Q Consensus 181 ~~~~~---------~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---~~~~~--~~------~~h 239 (473)
..... ...+ ..++..+.+++|.|. ..+|+.+-...-.+++.+.. ...+. .. ...
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~-----~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK-----TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETT-----TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCC-----CCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 32110 0011 234556788888773 24555555555555655432 11111 00 112
Q ss_pred cccEEEEEecCCC--eEEEeecCCeEEEEECCCCce
Q 011978 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL 273 (473)
Q Consensus 240 ~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~ 273 (473)
...+.++++++.. +++.+.....|-.+| .+|+.
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~ 204 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV 204 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence 2345566666542 344455556666666 34443
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.32 E-value=1.4 Score=44.01 Aligned_cols=104 Identities=15% Similarity=0.265 Sum_probs=66.3
Q ss_pred EEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEe--cCCCEEEEEeCCCcEEEEECCC---------
Q 011978 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWS--ADSRLLLSGSKDSTLKVWDIRT--------- 433 (473)
Q Consensus 366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~s--p~g~~l~s~s~Dg~i~iwd~~~--------- 433 (473)
+.-|.-++..+.-+....+.|||.+.+.....-. ...+.|.++.|. |||+.+.+.+..+.|.+|--..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334444444444444579999999887543322 346789999996 6899999999999999985321
Q ss_pred Cceee--cccccC-CCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 434 QKLKQ--DLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 434 ~~~~~--~~~~h~-~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
...+. .+..|. .+|.+..|.+||..++.+| +.+.|+
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~ 153 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVF 153 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEE
Confidence 11111 233444 4789999999986554443 345554
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.23 E-value=0.87 Score=46.66 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=50.8
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCC----------CCce---EEEe--------eCCccCEEEEEEecC---CCEE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGT----------TGKF---VAVF--------RGHVGPVYQISWSAD---SRLL 417 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~----------~~~~---~~~~--------~~h~~~v~~v~~sp~---g~~l 417 (473)
.|..|.++|+|.+||..|..|.+ |-.+. .|+. ...+ ..+...|..+.|+|. +.+|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 57889999999999998887643 33321 1211 1111 134457999999996 5789
Q ss_pred EEEeCCCcEEEEECCC
Q 011978 418 LSGSKDSTLKVWDIRT 433 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~ 433 (473)
+.-..|+++++||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999965
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.11 E-value=0.07 Score=53.64 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=53.9
Q ss_pred eEEEECC---CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE-----------EecCCCEEEEEeCCCcEEEE
Q 011978 364 NHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS-----------WSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 364 ~~v~~sp---~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~-----------~sp~g~~l~s~s~Dg~i~iw 429 (473)
.-|.|+| +..++..+-.++.+++.+...... ..+++|..++.+++ .||||..+|.++.||.++.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 3344444 567888888889988876554322 44566766555443 58999999999999999988
Q ss_pred ECC-CC----ceeecccccC
Q 011978 430 DIR-TQ----KLKQDLPGHA 444 (473)
Q Consensus 430 d~~-~~----~~~~~~~~h~ 444 (473)
.+. ++ +++...+.|.
T Consensus 263 Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeccccHhhhhccCCCC
Confidence 764 22 3344555565
No 395
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=6.1 Score=37.57 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=117.3
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee---cCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (473)
Q Consensus 212 ~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 287 (473)
.++....+..+.+.|..+.+......--. ....+++++++ .++.+. .++++.+.|..+++.+........+ ..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV 165 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence 56666667899999977766655432111 34567788776 455443 3788999998888877764332222 344
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee---ecCccccee
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQLVN 364 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~ 364 (473)
++.++.. ..+++-..++.+.+.|.......... ...-.....
T Consensus 166 a~~p~g~-----------------------------------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 166 AVDPDGN-----------------------------------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred EECCCCC-----------------------------------eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 4444321 12334456777777774432211000 111123345
Q ss_pred EEEECCCCcEEEEEECC---CcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeec
Q 011978 365 HVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQD 439 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~d---~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~ 439 (473)
.++++|+|+++...-.. +.+...|..++..... +..-......+..+|+|..+.+... .+.+.+-|..+.+....
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 68999999966655443 5899999888876654 2211114566889999999888744 47899999887666554
Q ss_pred c
Q 011978 440 L 440 (473)
Q Consensus 440 ~ 440 (473)
.
T Consensus 291 ~ 291 (381)
T COG3391 291 G 291 (381)
T ss_pred e
Confidence 3
No 396
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=1.3 Score=42.17 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEe---------CCCCceEEEee-----------CCccCEEEEEEecCC---CEEE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWN---------GTTGKFVAVFR-----------GHVGPVYQISWSADS---RLLL 418 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd---------~~~~~~~~~~~-----------~h~~~v~~v~~sp~g---~~l~ 418 (473)
.|..+..++.|..+|-.+.+|.+.++= ++.|+...+.+ ...-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 367788999999999999998655432 22343322111 112246788999975 5788
Q ss_pred EEeCCCcEEEEECCCCce
Q 011978 419 SGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~ 436 (473)
.-+.|++|++||......
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 888999999999876443
No 397
>PHA02713 hypothetical protein; Provisional
Probab=93.74 E-value=8.4 Score=38.74 Aligned_cols=94 Identities=6% Similarity=0.016 Sum_probs=51.5
Q ss_pred CCcEEEEEECCC-----------------------cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC----
Q 011978 371 DGQWVASASFDK-----------------------SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---- 423 (473)
Q Consensus 371 ~g~~lasgs~d~-----------------------~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---- 423 (473)
+|+..+.|+.++ .+..||..+.+....-.-.......-...-+|+..+.|+.+
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~ 477 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN 477 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc
Confidence 677777787652 47778887765432211111111111123356766667654
Q ss_pred --CcEEEEECCC-C--ceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 424 --STLKVWDIRT-Q--KLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 424 --g~i~iwd~~~-~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
..+..||..+ . .....++........+.+ +|+..+.||.|+
T Consensus 478 ~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 478 VKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred cceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 2467899876 3 334455433333323333 678889999887
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.55 E-value=1.7 Score=41.40 Aligned_cols=146 Identities=16% Similarity=0.288 Sum_probs=85.5
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+..|+....++-.|++.|+.+..+..+...+ +.+.|... .....++.-+
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~k-----------------------------f~qmt~eqtl 531 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFK-----------------------------FQQMTDEQTL 531 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcce--eecCCchh-----------------------------HHhcCccceE
Confidence 3356677778888888888888777665432 22222211 1111233445
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC----CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp----~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
.|-.+..++-.|++...... ......+.++.-.||. ...|+|.||..|.|++||.-.-..-..+.+-...|-.+.
T Consensus 532 vGlS~~svFrIDPR~~gNKi-~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKI-KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EeecccceEEecccccCCce-eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 55556666666765543211 1111112222222332 356899999999999999543333334555567888899
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
.+.+|.++++.+. ..+.+-|++
T Consensus 611 vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeec-ceEEEEecc
Confidence 9999998776654 456676654
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.24 E-value=0.44 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.9
Q ss_pred cCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978 403 GPVYQISWSADSR---LLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 403 ~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~ 433 (473)
+.|.++.|||+.. +|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998544 888888889999999985
No 400
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.01 E-value=0.72 Score=39.74 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=50.9
Q ss_pred ECCCCcEEEEEECCCcEEEEeCCCCceEEE-------ee-------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAV-------FR-------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-------~~-------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
+..++.+|++-..+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 456788999999999999999998875432 22 2456789999999998888776 57889998754
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.98 E-value=0.42 Score=28.52 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=25.4
Q ss_pred ceeEEEECCCC---cEEEEEECCCcEEEEeCCC
Q 011978 362 LVNHVYFSPDG---QWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 362 ~v~~v~~sp~g---~~lasgs~d~~v~lwd~~~ 391 (473)
.++++.|||+. .+|+..-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999854 5888888889999999985
No 402
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=3.5 Score=38.80 Aligned_cols=102 Identities=10% Similarity=0.167 Sum_probs=71.3
Q ss_pred cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
....+.|.++.||+|.+.||.--.|.+|.+++....+. ..+.+..+..|....|+.+ +-+|-.+..| +.+|.+.
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 34456899999999999999999999999998743222 1223344556899999866 5666666555 6777665
Q ss_pred CC-ceeecccccCCCEEEEEEeeCCCEEE
Q 011978 433 TQ-KLKQDLPGHADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 433 ~~-~~~~~~~~h~~~i~~l~~s~d~~~l~ 460 (473)
.. +.+...+.|.-.|+-..|.++.+.+.
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEe
Confidence 42 23444556777788888888876543
No 403
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.42 E-value=0.018 Score=53.67 Aligned_cols=144 Identities=19% Similarity=0.315 Sum_probs=94.5
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCCeEEEeeCCCCccccccCC
Q 011978 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLS 190 (473)
Q Consensus 112 ~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i~iwd~~~~~~~~~~~~ 190 (473)
....|-|.+..++.++.+..+..||-..+.-.. ....+....|+|..+|..++. +-..+.+.+||+.+.........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677888789988888889999865432111 123445667888888876654 55678999999875432211111
Q ss_pred C-cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEE
Q 011978 191 G-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (473)
Q Consensus 191 ~-~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~ 264 (473)
+ |.... ..|++. ...++.+...|.+.|++..+.+.+.....|...+++++|..+++.+.++.|..+.
T Consensus 116 g~~s~sl--l~wsKg-----~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKG-----TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred CcchHHH--HhhccC-----CccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 1 11111 344442 2345566678999999988776666665599999999999988877777665443
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.22 E-value=2.7 Score=39.06 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=57.1
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCce---EEEe----eCCccCEEEEEEecC----CCEEEEEeCC-------
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF---VAVF----RGHVGPVYQISWSAD----SRLLLSGSKD------- 423 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~---~~~~----~~h~~~v~~v~~sp~----g~~l~s~s~D------- 423 (473)
..++|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988776 5589999999 44433 2222 223457899999994 4333333321
Q ss_pred -CcEEEEECCCC-------c-eeecccc---cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 424 -STLKVWDIRTQ-------K-LKQDLPG---HADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 424 -g~i~iwd~~~~-------~-~~~~~~~---h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
..|.-|..... + +...++. ....-..|.|.|||.++++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444444322 1 1112222 223456799999998777776544
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.69 E-value=11 Score=34.96 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred EeeCCccCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCce---eec-ccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 397 VFRGHVGPVYQISWSA-------DSRLLLSGSKDSTLKVWDIRTQKL---KQD-LPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 397 ~~~~h~~~v~~v~~sp-------~g~~l~s~s~Dg~i~iwd~~~~~~---~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
.+..| ..+..+.|-. .|.++++.-..+.|....+..... ... +.....++..+++.|||..+++-+.+
T Consensus 248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34444 4566777753 345566555566777777764321 122 33444489999999999999999888
Q ss_pred CcEE
Q 011978 466 RVLK 469 (473)
Q Consensus 466 ~~i~ 469 (473)
|.|.
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8773
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.49 E-value=1.6 Score=37.72 Aligned_cols=65 Identities=14% Similarity=0.291 Sum_probs=48.7
Q ss_pred ECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-------c-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-------T-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 116 ~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
+..++.+|++-..+|.+++||+.+++.+... . .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 5567889999999999999999887644321 1 2456788899998888777655 57888888653
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.47 E-value=0.072 Score=53.53 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=48.8
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE-----------ECCCCCeEEEEecCCeEEEeeC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~-----------~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
|.-+-|-++.-++..+-.+++|++-++++... ..+.+|..++..++ .||||+.++.++.||.+++|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44444555667777777889999887765432 22335776665554 5899999999999999988875
Q ss_pred C
Q 011978 180 Q 180 (473)
Q Consensus 180 ~ 180 (473)
.
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 4
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.25 E-value=4.1 Score=41.97 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=48.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCC----------Ccee---ecc--------cccCCCEEEEEEeeC---CCEE
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRT----------QKLK---QDL--------PGHADEVFAVDWSPD---GEKV 459 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~----------~~~~---~~~--------~~h~~~i~~l~~s~d---~~~l 459 (473)
.|..|.+||+|++||..|..|.+.+ .+.. ++.. .++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5889999999999999988774433 3321 1110 011 123457899999998 4899
Q ss_pred EEEeCCCcEEecc
Q 011978 460 ASGGKDRVLKLWM 472 (473)
Q Consensus 460 ~s~~~D~~i~~w~ 472 (473)
+.-..|+++|+|+
T Consensus 165 ~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 165 VVLTSDNTLRLYD 177 (717)
T ss_pred EEEecCCEEEEEe
Confidence 9999999999986
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.20 E-value=1.6 Score=41.54 Aligned_cols=53 Identities=21% Similarity=0.428 Sum_probs=44.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
..++|.||..|.|++||--..+...-+++-...|-.++.+.+|+++.+.+...
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y 625 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY 625 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce
Confidence 34899999999999999876666677888888999999999999988766543
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=9 Score=36.23 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=79.9
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEeCCC---CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc---
Q 011978 113 SVAFSPDGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--- 186 (473)
Q Consensus 113 ~~~~sp~~~~lat~s~d~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~--- 186 (473)
.+-|.-..+.|++ -..|.+.=|-++. .-+.......+++|.++.||+|.+.||.-..+++|.+++....+...
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3445443443332 2334444454432 22333334456799999999999999999999999999874433221
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe--EEEee-cCCe
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV--IYTGS-QDCT 262 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~-~d~~ 262 (473)
......+..|.+..|... ..++..+..| +.+|.... .+.+...+.|...|.--.|.++-. +++.+ ..++
T Consensus 106 ~~ck~k~~~IlGF~W~~s------~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ 178 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS------TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENV 178 (657)
T ss_pred HHhccCcceeEEEEEecC------eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccc
Confidence 112223345777777642 2233333222 33443221 122233345677777777777652 23333 4455
Q ss_pred EEEEECCCC
Q 011978 263 IKVWETTQG 271 (473)
Q Consensus 263 i~~wd~~~~ 271 (473)
+.=+.++++
T Consensus 179 lnpf~~~~~ 187 (657)
T KOG2377|consen 179 LNPFHFRAG 187 (657)
T ss_pred cccEEEeec
Confidence 554554444
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.73 E-value=3.2 Score=39.23 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=58.3
Q ss_pred ceeEEEECCCCcEEEEEE-----------CCC-cEEEEeCCC--Cc--eEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 362 LVNHVYFSPDGQWVASAS-----------FDK-SIKLWNGTT--GK--FVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs-----------~d~-~v~lwd~~~--~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
....|+|.++|+++++-. ..+ .|.+++-.. |+ ....+.........+++.++| +++ ++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 356789999999877653 223 677776543 33 233444344456889999998 444 444433
Q ss_pred EEEEECCC-------Cc-eeecccc----cCCCEEEEEEeeCCCEEEEEe
Q 011978 426 LKVWDIRT-------QK-LKQDLPG----HADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 426 i~iwd~~~-------~~-~~~~~~~----h~~~i~~l~~s~d~~~l~s~~ 463 (473)
.++.|... .+ +...+.. +......+.|.|||+..++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33435432 11 1222322 123477899999998777666
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.40 E-value=7.6 Score=34.51 Aligned_cols=112 Identities=10% Similarity=0.214 Sum_probs=78.4
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL-- 436 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~-- 436 (473)
...+.++.|+|+.+.|.+......--|+=...|+.+.++.-. -.-.-.+.|.-+|++.++--.++.++++.+.....
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345899999999999988887777777766778888775421 11234577888888888877888998887765421
Q ss_pred -----eecc---cccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 437 -----KQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 437 -----~~~~---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
...+ ...+..--.++|+|..+.|..+-+-+-++||
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF 207 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence 1111 1113445689999999998888776666655
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.35 E-value=10 Score=37.12 Aligned_cols=117 Identities=13% Similarity=0.279 Sum_probs=73.5
Q ss_pred eecCcccceeEEEECCC----CcEEEEEECCCcEEEEeCC-----CCceEEEeeCCc---cC--EEEEEEecCCCEEEEE
Q 011978 355 RMTGHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGT-----TGKFVAVFRGHV---GP--VYQISWSADSRLLLSG 420 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~----g~~lasgs~d~~v~lwd~~-----~~~~~~~~~~h~---~~--v~~v~~sp~g~~l~s~ 420 (473)
+..|....|..++|.|- -..|.+....+.|.+|.+. +.+.+.....+. -+ -..+.|+|....|+.-
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 34455567899999984 3244444566789999864 233332211111 11 1356799998888877
Q ss_pred eCCCcEEEEECCC--CceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEecc
Q 011978 421 SKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM 472 (473)
Q Consensus 421 s~Dg~i~iwd~~~--~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w~ 472 (473)
.....-.+++++. .+....+.+ .+.|.+.+|.+||+.|+.+-.. =.-++|+
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 6655556667653 445556654 5679999999999998766443 2345664
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=89.76 E-value=17 Score=33.81 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEE-EEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVR-LWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~-iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
...+.++.+.|++.+++++.. |.+. .+|-. ++.-.. ...-...+.++.+.++++.++.+ ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457889999999887766543 4443 33221 111111 12334578899999998866654 5577654333344321
Q ss_pred cccCC---CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEEEEEecCCCeEEEeec
Q 011978 186 GNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ 259 (473)
Q Consensus 186 ~~~~~---~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~ 259 (473)
..... .....+.++.+.| . ..+..++.+|.+.. ....++.-.... +-......+.+..++..+..+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~-----~-~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT-----P-GEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcC-----C-CCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 11111 1122355666554 2 23555666665543 333333222221 2223456666666666677777
Q ss_pred CCeEEEEE
Q 011978 260 DCTIKVWE 267 (473)
Q Consensus 260 d~~i~~wd 267 (473)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88876664
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.70 E-value=3.8 Score=41.57 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=68.4
Q ss_pred CceEEEecCCceEEEEeCCC-------C----C--------CCeeeecCcccceeEEEEC--CCCcEEEEEECCCcEEEE
Q 011978 329 PERLVSGSDDFTMFLWEPAV-------S----K--------QPKTRMTGHQQLVNHVYFS--PDGQWVASASFDKSIKLW 387 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~-------~----~--------~~~~~~~~~~~~v~~v~~s--p~g~~lasgs~d~~v~lw 387 (473)
.+.|+.+.+||.+.+|.... . . .|...+ .-....++++++ ...++||.++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788999999999996410 0 0 111111 123468899999 888999999988888888
Q ss_pred eCCCC--ceEEE-eeCCccCEEEEEEecCC-----C-EEEEEeCCCcEEEEEC
Q 011978 388 NGTTG--KFVAV-FRGHVGPVYQISWSADS-----R-LLLSGSKDSTLKVWDI 431 (473)
Q Consensus 388 d~~~~--~~~~~-~~~h~~~v~~v~~sp~g-----~-~l~s~s~Dg~i~iwd~ 431 (473)
-.... +.... -..|..-|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54331 11110 01245568899997643 2 7888999999999888
No 416
>PRK10115 protease 2; Provisional
Probab=89.35 E-value=29 Score=35.97 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred ccEEEEEECCCCCeEEEEeC-----CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC------CeEEEe
Q 011978 109 EAVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCW 177 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d------g~i~iw 177 (473)
-.+..+.++|||++||.+.. ...|++-|+.++..+....... -..++|++|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999999886532 2368889998776332211111 1469999999877765442 367888
Q ss_pred eCCCC
Q 011978 178 DPQTG 182 (473)
Q Consensus 178 d~~~~ 182 (473)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 88877
No 417
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.33 E-value=19 Score=34.86 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=60.8
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEe----e-CCccCEEEEEEecCC------CEEEEEe------
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF----R-GHVGPVYQISWSADS------RLLLSGS------ 421 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~----~-~h~~~v~~v~~sp~g------~~l~s~s------ 421 (473)
...+.|+|.|||++|++--..|.|++++..++.. +..+ . ...+....|+++|+- .+|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 3467899999999888876579999998655432 2111 1 135678999999873 2333331
Q ss_pred ----CCCcEEEEECCCC-------c-eeeccc---ccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 422 ----KDSTLKVWDIRTQ-------K-LKQDLP---GHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 422 ----~Dg~i~iwd~~~~-------~-~~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
....|.-|.+... + ++..++ .|.. -.|.|.|||+++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence 1223444544311 1 112221 2433 467899999877766554
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.03 E-value=3.7 Score=41.14 Aligned_cols=68 Identities=26% Similarity=0.468 Sum_probs=48.3
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--cccccCCCEEEEEEe--eCCCEEEEEeCCCcEEecc
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWS--PDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~--~~~~h~~~i~~l~~s--~d~~~l~s~~~D~~i~~w~ 472 (473)
...-+.-|.-++..++-+....+.|||.+.+.... .+ ...+.|.+++|. |||+.+.+.|-.+.|.++.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 44445555555554444445579999999876543 33 346789999985 8899999999999988863
No 419
>PHA03098 kelch-like protein; Provisional
Probab=89.03 E-value=27 Score=35.05 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=45.8
Q ss_pred CCcEEEEEECC------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC--------cEEEEECCCCce
Q 011978 371 DGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--------TLKVWDIRTQKL 436 (473)
Q Consensus 371 ~g~~lasgs~d------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--------~i~iwd~~~~~~ 436 (473)
+++..+.|+.+ +.+..||..+.+....-......-...+...+++..+.|+.++ .+.+||..+.+-
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 56777777732 3588899877654322110000001112233566666666432 388899876542
Q ss_pred --eecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 437 --KQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
...+.........+ .-+++.++.||.+
T Consensus 469 ~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~ 497 (534)
T PHA03098 469 TELSSLNFPRINASLC--IFNNKIYVVGGDK 497 (534)
T ss_pred eeCCCCCcccccceEE--EECCEEEEEcCCc
Confidence 22222111111122 2367777777765
No 420
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.88 E-value=33 Score=35.92 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--------EEEEEEC----------------CCCCeEEEEecCCeEE
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ 175 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------~dg~~l~s~~~dg~i~ 175 (473)
+..|+.++.++.|.-.|..+++.+.++...... ...+++- ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788888888898888877665422110 1112221 1345788899999999
Q ss_pred EeeCCCCccccccCCCcCCcEE-------------EEEeceeccCCCCceEEEeeC----------CCcEEEEECCCCeE
Q 011978 176 CWDPQTGKPSGNPLSGHKKWIT-------------GISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC 232 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~-------------~i~~~~~~~~~~~~~~~s~s~----------dg~i~iwd~~~~~~ 232 (473)
-.|.++|+..... +....+. .+.-.|.- ....++.|+. +|.|+-+|..+++.
T Consensus 274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999865321 1111110 01111211 1235555543 68899999999998
Q ss_pred EEEec
Q 011978 233 VICLS 237 (473)
Q Consensus 233 ~~~~~ 237 (473)
+..+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87653
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.78 E-value=16 Score=32.24 Aligned_cols=179 Identities=12% Similarity=0.148 Sum_probs=96.3
Q ss_pred EEEEEecCCCeEE-EeecCC--eEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 243 VTCVKWGGDGVIY-TGSQDC--TIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 243 v~~~~~~~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...+.|..++.|+ +.+.-| .|+.+|+.+|+......-.... -..+++..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--------------------------- 99 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--------------------------- 99 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET---------------------------
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC---------------------------
Confidence 3456775566544 556555 7888999999876554322110 01111111
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.....-.-.++..++||...-+........ ..=+.++ .||+.|+.......++++|..+.+....+
T Consensus 100 ----------d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 100 ----------DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred ----------CEEEEEEecCCeEEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 112333445778888987543322221111 2334455 45666666655668999999888776655
Q ss_pred eCC-----ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc------------cc---CCCEEEEEEeeCCCE
Q 011978 399 RGH-----VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------------GH---ADEVFAVDWSPDGEK 458 (473)
Q Consensus 399 ~~h-----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------~h---~~~i~~l~~s~d~~~ 458 (473)
+.. -..++.+.|- +|...|=.=....|...|..+|+....+. .+ .+-.+.++|.|..+.
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 432 2346777775 66666555555667777888887654221 01 245789999988776
Q ss_pred EEEEe
Q 011978 459 VASGG 463 (473)
Q Consensus 459 l~s~~ 463 (473)
|...|
T Consensus 245 l~vTG 249 (264)
T PF05096_consen 245 LFVTG 249 (264)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65444
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.51 E-value=11 Score=38.54 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=76.7
Q ss_pred cEEEEEECC--CCCeEEEEeCCCeEEEEeCCC-------C-------------ceeEEEcCCCCCEEEEEEC--CCCCeE
Q 011978 110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL 165 (473)
Q Consensus 110 ~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~s--~dg~~l 165 (473)
.|+-+.... ....|+.|.+||.|.+|.+++ . +|.+.+. -...++.+++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 466665443 345788999999999997521 0 1222222 23468889988 777888
Q ss_pred EEEecCCeEEEeeCCC--CccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcEEEEEC
Q 011978 166 VSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV 227 (473)
Q Consensus 166 ~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i~iwd~ 227 (473)
|+++....|.+|-... .+.....-..|...|.+|+|.+......+. .++.++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888887775433 221111112355678999998876554443 6777888999999887
No 423
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.33 E-value=22 Score=33.31 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=93.1
Q ss_pred EEeceeccCCCCceEEEeeC-C--CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCcee
Q 011978 199 ISWEPVHLNAPCRRFVSASK-D--GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 199 i~~~~~~~~~~~~~~~s~s~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~ 274 (473)
+-|....+..++++|+-++. | ..+.+.|+.+++..+...+.........+++++ .++-......++-.|+.+.+..
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 44444455566777766554 4 456677888887665443321111112223333 3333334467777788887654
Q ss_pred eeeeccCceEEEEEe--cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978 275 RELKGHGHWVNSLAL--STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 352 (473)
........++....+ ..+.....+... ....+..... .....+.+.. .. ...|..-|+..+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~-~~~d~~~l~~-~~~f~e~~~a---~p---------~~~i~~idl~tG~-- 179 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEI-SREDWKPLTK-WKGFREFYEA---RP---------HCRIFTIDLKTGE-- 179 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEE-EGGG-----S-HHHHHHHHHC---------------EEEEEEETTT----
T ss_pred EEEECCcccccccceeeCCCccEEEEEEE-eehhccCccc-cHHHHHHHhh---CC---------CceEEEEECCCCc--
Confidence 444445555533222 222222222110 0000100000 0000111111 11 1122223333221
Q ss_pred eeeecCcccceeEEEECCC-CcEEEEEEC---CC-cEEEEeCC-CCceEEEeeCCc--cCEEEEEEecCCCEEEEEe---
Q 011978 353 KTRMTGHQQLVNHVYFSPD-GQWVASASF---DK-SIKLWNGT-TGKFVAVFRGHV--GPVYQISWSADSRLLLSGS--- 421 (473)
Q Consensus 353 ~~~~~~~~~~v~~v~~sp~-g~~lasgs~---d~-~v~lwd~~-~~~~~~~~~~h~--~~v~~v~~sp~g~~l~s~s--- 421 (473)
...+..-..++.-+.|||. ..+|+-|-. |. .-|+|-++ .|.....+..|. ..+.-=-|.|||..|.--+
T Consensus 180 ~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~ 259 (386)
T PF14583_consen 180 RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP 259 (386)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC
Confidence 2222223456778899994 555665543 22 13566433 233333333232 2233445789998655322
Q ss_pred --CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 422 --KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 422 --~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
.+..|.-+|..+++...... ...-..+--++||+++|-=|.|
T Consensus 260 ~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 24456667777765432211 1223455668999887765555
No 424
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.58 E-value=41 Score=35.43 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=67.6
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCC-CCceEEEeeCCCcEEEEECCCC
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA-PCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
.++....+.+..+++.++.++.+...++..+.........-...|.|+.++|..-.+ ....++.|.++..+.+--....
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 344444455666788888778887777766542222222334568888888864332 2346677777766555432222
Q ss_pred eEEEE---ecCc--cccEEEEEecC-CCeEEEeecCCeEEEE--ECCCCc
Q 011978 231 KCVIC---LSGH--TLAVTCVKWGG-DGVIYTGSQDCTIKVW--ETTQGK 272 (473)
Q Consensus 231 ~~~~~---~~~h--~~~v~~~~~~~-~~~l~s~~~d~~i~~w--d~~~~~ 272 (473)
-++.+ +.+. ...|.-.++-. .++|+++..||.+.-| |..+|+
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ 618 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ 618 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce
Confidence 22211 1111 12344444555 4478899999998755 444443
No 425
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=22 Score=38.49 Aligned_cols=34 Identities=3% Similarity=0.035 Sum_probs=28.5
Q ss_pred CcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 358 ~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
.+.+.|..+++......+.+-+..++|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4556788888888888899999999999999875
No 426
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=87.15 E-value=50 Score=36.05 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=17.4
Q ss_pred cCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 443 HADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 443 h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
|-..+.+|+.+|||...+.-..+.+|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 44467788888888876665555444
No 427
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.15 E-value=1.8 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=19.5
Q ss_pred CCCEEEEEEeeCCCEEEEEe-CC--CcEEec
Q 011978 444 ADEVFAVDWSPDGEKVASGG-KD--RVLKLW 471 (473)
Q Consensus 444 ~~~i~~l~~s~d~~~l~s~~-~D--~~i~~w 471 (473)
........|||||++|+-++ .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567889999999987655 44 666666
No 428
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.60 E-value=8.9 Score=36.35 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=48.2
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCccc-ceeEEEECC--CCcEEEEE-ECCCcEEEE-eCCCCce----EEEeeC--
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSP--DGQWVASA-SFDKSIKLW-NGTTGKF----VAVFRG-- 400 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp--~g~~lasg-s~d~~v~lw-d~~~~~~----~~~~~~-- 400 (473)
+..+....++.+||....+..+..-.+... .+..|.|.. +..+=.+| -...+|..| ....++. +..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 344455678999998765544444344322 355666654 44433333 234445444 3244432 111111
Q ss_pred ---C------------ccCEEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 011978 401 ---H------------VGPVYQISWSADSRLLLSGS-KDSTLKVWDIRT 433 (473)
Q Consensus 401 ---h------------~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~ 433 (473)
- .+-|+++..|.|.++|.... .+|.|+.||+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0 24579999999999988776 489999999975
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=1.7 Score=45.55 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=67.8
Q ss_pred eeEEEECCCCcEEEEE--ECCCcEEEEeCCCCceE-----EEeeC------CccCEEEEEEecCCC-EEEEEeCCCcEEE
Q 011978 363 VNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFV-----AVFRG------HVGPVYQISWSADSR-LLLSGSKDSTLKV 428 (473)
Q Consensus 363 v~~v~~sp~g~~lasg--s~d~~v~lwd~~~~~~~-----~~~~~------h~~~v~~v~~sp~g~-~l~s~s~Dg~i~i 428 (473)
+..+...+|+...++. +.+-.|..||+++-... .-+.. ......++.|+|.=. ..+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 3445556676655444 33447889998754321 11111 223567888988532 3455667888888
Q ss_pred EECCCCce-eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 429 WDIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 429 wd~~~~~~-~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
..+..... ...++ -....++++|+|.|+.++.|-..|++.-|
T Consensus 183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEe
Confidence 87654322 22332 23568999999999999999999987644
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.40 E-value=6.3 Score=37.56 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=54.4
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----EEEEEECCC--------------CCe
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSAD--------------GKH 164 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----v~~l~~s~d--------------g~~ 164 (473)
.+......+.++..+|++++.|+...=|.|.++|+.++..+...+|..+. +....-... ..+
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34455567889999999998888767799999999888766666554432 111110000 112
Q ss_pred -EEEEecCCeEEEeeCCCCcc
Q 011978 165 -LVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 165 -l~s~~~dg~i~iwd~~~~~~ 184 (473)
++-+..-|.|.+|.+++|..
T Consensus 382 LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EEEEeccCCeEEEEecCCCCE
Confidence 23466789999999988764
No 431
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.99 E-value=4 Score=23.66 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.2
Q ss_pred CCCCEEEEEECCCCCeEEEEec-C--CeEEEe
Q 011978 149 HKNWVLCIAWSADGKHLVSGSK-A--GELQCW 177 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~-d--g~i~iw 177 (473)
....-....|||||+.|+-++. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999886654 3 455554
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.70 E-value=4.2 Score=42.82 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=64.2
Q ss_pred eeEEEECCCC-cEEEEEECCCcEEEEeCCCCce-EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 363 VNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF-VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 363 v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
..++.|.|.- ...|....|+.|++..+..... +..+. -....++++|+|.|+.++.|-..|++.-|...- +....+
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~i 235 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEI 235 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecc
Confidence 4566777743 2355566788888876543222 12222 345689999999999999999999999886543 222222
Q ss_pred c---cc-CCCEEEEEEeeCCCEEEE
Q 011978 441 P---GH-ADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 441 ~---~h-~~~i~~l~~s~d~~~l~s 461 (473)
+ .. ..+|.+|+|-....++++
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEEE
Confidence 2 11 357999999887777765
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.33 E-value=23 Score=30.47 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=40.1
Q ss_pred EEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS 411 (473)
Q Consensus 366 v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s 411 (473)
+++..+|.+.++.-..++|...|..+|+.+..++-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4556688888888888999999999999999998888899999995
No 434
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.93 E-value=6.8 Score=32.34 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.2
Q ss_pred CEEEEEEeeCC------CEEEEEeCCCcEEecc
Q 011978 446 EVFAVDWSPDG------EKVASGGKDRVLKLWM 472 (473)
Q Consensus 446 ~i~~l~~s~d~------~~l~s~~~D~~i~~w~ 472 (473)
.+.+++|||-| -.||..+.++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 68899999954 4789999999999985
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.74 E-value=3.9 Score=41.12 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=27.0
Q ss_pred cCEEEEEEec----CCCEEEEEeCCCcEEEEECCCCceee
Q 011978 403 GPVYQISWSA----DSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 403 ~~v~~v~~sp----~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
+.+..++.++ +..+|++.+.|+++|+||+.+++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 3456666666 67899999999999999999988743
No 436
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.67 E-value=3.8 Score=24.09 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.6
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCceeecccc
Q 011978 412 ADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 412 p~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~ 442 (473)
|++++|+++. .+++|.++|..+++....+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666654 578999999988877665543
No 437
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.32 E-value=26 Score=30.19 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=61.9
Q ss_pred eeEEEECCCCcEEE-EEECCCcEEEEe--CCCCce-----EEEeeCC----ccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 363 VNHVYFSPDGQWVA-SASFDKSIKLWN--GTTGKF-----VAVFRGH----VGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 363 v~~v~~sp~g~~la-sgs~d~~v~lwd--~~~~~~-----~~~~~~h----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
-+.++|+.+.+.+. +-+.+-+|.-|| ..+|.. +..++.. ...--.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35678887776554 445667787787 555542 2233221 11112344455777777777788999999
Q ss_pred CCCCceeecccccCCCEEEEEEee
Q 011978 431 IRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 431 ~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
..+++.+.++.-....|++++|--
T Consensus 240 p~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecC
Confidence 999999888777788999999963
No 438
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.46 E-value=28 Score=35.17 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=68.3
Q ss_pred eEEEecCCc------eEEEEeCCCCCCC-eeeecCcccceeEEEECCCCcEEEEEECC------CcEEEEeCCCCceEEE
Q 011978 331 RLVSGSDDF------TMFLWEPAVSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAV 397 (473)
Q Consensus 331 ~l~~~~~d~------~i~iwd~~~~~~~-~~~~~~~~~~v~~v~~sp~g~~lasgs~d------~~v~lwd~~~~~~~~~ 397 (473)
.++.|+.++ .+..+|+...... ...+. ....-.++++. ++...++|+.| .++..||..+.+....
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 455666553 4667776543211 11122 11122233333 56788888888 3577888887764432
Q ss_pred eeCCccCEEEEEE-ecCCCEEEEEeCCCc-----EEEEECCCCce--eecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 398 FRGHVGPVYQISW-SADSRLLLSGSKDST-----LKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 398 ~~~h~~~v~~v~~-sp~g~~l~s~s~Dg~-----i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
-.-... -..+.. .-+|...|+|+.||. |-.||..+.+- ...+.......-. -.-+|+..+.||.|+.-
T Consensus 365 a~M~~~-R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTK-RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCc-cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE--EEECCEEEEEcCcCCCc
Confidence 111111 111111 236788888998874 77788776432 2222211111112 23467888888877643
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.43 E-value=6.9 Score=22.90 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC
Q 011978 370 PDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG 400 (473)
Q Consensus 370 p~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~ 400 (473)
|++++|.++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5667666554 578999999988887777654
No 440
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.93 E-value=15 Score=33.02 Aligned_cols=71 Identities=23% Similarity=0.463 Sum_probs=48.9
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe------CCCcEEEEECCCCceeecccc-----cCCCEEE
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS------KDSTLKVWDIRTQKLKQDLPG-----HADEVFA 449 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s------~Dg~i~iwd~~~~~~~~~~~~-----h~~~i~~ 449 (473)
...|.+||..+.+....-.+-.+.|+++.|..+.++++.|. ....+-.||.....-. .+.+ -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 34699999888776665556678999999997777777765 3456888998775432 2222 1256777
Q ss_pred EEE
Q 011978 450 VDW 452 (473)
Q Consensus 450 l~~ 452 (473)
+.+
T Consensus 94 ~~~ 96 (281)
T PF12768_consen 94 LTF 96 (281)
T ss_pred EEe
Confidence 765
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.83 E-value=0.12 Score=48.41 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=84.7
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCCCceEE-EeeC-CccCEEEE
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVA-VFRG-HVGPVYQI 408 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~~~~~~-~~~~-h~~~v~~v 408 (473)
++.++.+..+..||-....... ...+.....++|..++..++. +-..+.+.+||+.+..... .+.+ |.... +
T Consensus 49 lavaca~tiv~~YD~agq~~le---~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l 123 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVILE---LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--L 123 (615)
T ss_pred eehhhhhhHHHhhhhhcceecc---cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--H
Confidence 6666667777777743221111 112233445677777765543 4456789999987542111 1111 22222 7
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 409 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 409 ~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
.|++.+..++.+-..|.+.|++..+.+.....-.|..++++++|.+.+ +.+.++.|..+
T Consensus 124 ~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 124 AWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred hhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence 899988899999889999999998877665554499999999999975 56777766543
No 442
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.72 E-value=8.2 Score=38.82 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=29.0
Q ss_pred ceeEEEECC----CCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 362 LVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 362 ~v~~v~~sp----~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
....+++++ +..+|++-+.|+.+|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455667776 7789999999999999999999986654
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.49 E-value=24 Score=32.71 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=58.7
Q ss_pred eeEEEECCCCcEEEEEECC------CcEEEEeCCCCceEEEee---------------CCccCEEEEEEecCCCEEEEEe
Q 011978 363 VNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFR---------------GHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d------~~v~lwd~~~~~~~~~~~---------------~h~~~v~~v~~sp~g~~l~s~s 421 (473)
..+|++.++|.++++.-.+ ..|+-++.. |+....+. ..+...-+++++|||+.|.++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3456666777777776666 677777765 55433321 1345688999999999655543
Q ss_pred C-----CC--c-------EEEE--ECCC-C----ceeecccc-----cCCCEEEEEEeeCCCEEE
Q 011978 422 K-----DS--T-------LKVW--DIRT-Q----KLKQDLPG-----HADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 422 ~-----Dg--~-------i~iw--d~~~-~----~~~~~~~~-----h~~~i~~l~~s~d~~~l~ 460 (473)
. |+ . ++|+ |..+ + +....+.. ....|..+.+-+|+++|+
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 2 32 1 4554 4443 2 12233332 345688899999998765
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.24 E-value=31 Score=37.46 Aligned_cols=150 Identities=14% Similarity=0.215 Sum_probs=83.9
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
+..+-|+.+.+|+..++.....+.+-.+.|..+.+-.. ..+.|-... ..++.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP---kpgvFv~~I-------------------------qhlLv 144 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP---KPGVFVPEI-------------------------QHLLV 144 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecC---CCCcchhhh-------------------------heeEE
Confidence 45677999999999998887877777777777654211 011111000 01111
Q ss_pred ecCCceEEEEeCCCCC--CCe------eeecCcccceeEEEECCCCcEEEEEECCCcEEE--EeCCCC---c-e------
Q 011978 335 GSDDFTMFLWEPAVSK--QPK------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL--WNGTTG---K-F------ 394 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~--~~~------~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l--wd~~~~---~-~------ 394 (473)
-+.--.+.++-+.... ... .......-.|+++....+|+.+.+|-.| .++= |....+ + +
T Consensus 145 vaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 145 VATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred ecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCc
Confidence 1111112222111000 000 1111223468889888889988776555 3321 111111 0 0
Q ss_pred ----------EEEee-CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 395 ----------VAVFR-GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 395 ----------~~~~~-~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
+-.+. .+..+|..++....-+.|.+-+..|+|.+||+..
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11122 4677999999988888999999999999999975
No 445
>PHA03098 kelch-like protein; Provisional
Probab=82.13 E-value=58 Score=32.63 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCCcEEEEEECCC--------cEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 011978 370 PDGQWVASASFDK--------SIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQ 434 (473)
Q Consensus 370 p~g~~lasgs~d~--------~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~ 434 (473)
.++...+.|+.+. .+..||..+.+.... +.........+. .+++.++.|+.+ +.+.+||..+.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 3566777776432 388889887654332 111111111222 267777777654 46888888764
No 446
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=81.07 E-value=54 Score=31.51 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCc--e--eEEEcCCCCCEEEEEECC-----CCCeEEEEecCCeEEEeeCCC--Cc----
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQT--P--MFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQT--GK---- 183 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~--~--~~~~~~~~~~v~~l~~s~-----dg~~l~s~~~dg~i~iwd~~~--~~---- 183 (473)
+...++.||..|.+|||+..... + +.--..-..+|..++.-+ +...||. =--.++.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999985432 1 111123356787777532 1223333 3345677776621 11
Q ss_pred -c-ccccCCCcCCcEEE--EEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEee
Q 011978 184 -P-SGNPLSGHKKWITG--ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258 (473)
Q Consensus 184 -~-~~~~~~~~~~~v~~--i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~ 258 (473)
. .......|.-.-.+ +.+-|..-......+..-+.||.+.+++-+.......+.+ ..--..+.+.+. ..+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 0 00111222211111 1222211111235667778999999998765544333333 111122334332 3567777
Q ss_pred cCCeEEEEE
Q 011978 259 QDCTIKVWE 267 (473)
Q Consensus 259 ~d~~i~~wd 267 (473)
.+..+.-|.
T Consensus 194 ss~~l~~Yk 202 (418)
T PF14727_consen 194 SSWTLECYK 202 (418)
T ss_pred CceeEEEec
Confidence 776666554
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.76 E-value=25 Score=27.40 Aligned_cols=116 Identities=9% Similarity=0.139 Sum_probs=62.4
Q ss_pred EECCCCCeEEEEecCCeEEEeeCCCCccccc------cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 157 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
.|......|++++.-|+|.|+++........ .+-.-...|++++--+.........++.| ...++..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcccC
Confidence 4555556788888889999998764332110 11122445677665554433344455554 4568889998876
Q ss_pred eEEEEecCccccEEEEEec---C-CCeEEEeecCCeEEEEECCCCcee
Q 011978 231 KCVICLSGHTLAVTCVKWG---G-DGVIYTGSQDCTIKVWETTQGKLI 274 (473)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~---~-~~~l~s~~~d~~i~~wd~~~~~~~ 274 (473)
.-+.... -...|.++.+. . +..++..+....|.-||....+..
T Consensus 84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred chhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 5443221 22345555542 1 223443444456666665444433
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.50 E-value=4.6 Score=22.23 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=21.9
Q ss_pred CCeEEEeecCCeEEEEECCCCceeee
Q 011978 251 DGVIYTGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~~~~~~~ 276 (473)
++.++.++.++.+..+|..+|+.+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 56788899999999999999887654
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.34 E-value=21 Score=29.49 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=26.5
Q ss_pred cEEEEEeceeccCCC-CceEEEeeCCCcEEEEECC
Q 011978 195 WITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~-~~~~~s~s~dg~i~iwd~~ 228 (473)
.+.+++|+|...... ...+++.+.++.|.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 688999999766544 4577888899999999754
No 450
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.01 E-value=57 Score=31.20 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred cceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC---ceEEEee-C---------------CccCEEEEEEecCCCEEEEE
Q 011978 361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG---KFVAVFR-G---------------HVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~---~~~~~~~-~---------------h~~~v~~v~~sp~g~~l~s~ 420 (473)
..|+.|.+|.|.++|.... .+|.||.||+... +++.... + -.+...-|..|-||+.|...
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578899999999988766 5899999998764 3333221 1 01233556777787776654
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=21 Score=34.50 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEe
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWD 136 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd 136 (473)
.|..+..++.|..+|-++.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 577889999999999999998776653
No 452
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.04 E-value=51 Score=30.06 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=65.8
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe-CCCCceEEE--ee--CCccCEE
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN-GTTGKFVAV--FR--GHVGPVY 406 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd-~~~~~~~~~--~~--~h~~~v~ 406 (473)
++.++......-||.-...- ..........|..+.|+|++.+.+.+ ..|.|++=+ ....+.-.. .. ...-.+.
T Consensus 159 vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGIL 236 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EE
T ss_pred EEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeE
Confidence 44554444455676432211 11122234679999999998877755 777787766 222221111 11 1122489
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCce---eecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKL---KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+++|.+++...|+|+. |++ +.....++. ......-....+.+.|.++.+-+| .+.||.|.-|
T Consensus 237 d~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 9999999888876654 443 334444443 222222345688999987755554 4566766544
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.80 E-value=62 Score=30.92 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=65.1
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-----eEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-----FVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-----~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
...+..+.+.+++.+++++ .+|.+ +|....++ ....... ....+.++.|.+++..+++| .+|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 3457889999999988776 44544 34444443 1222221 12358999999888766555 678766653 3
Q ss_pred CCceeecc---cccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 433 TQKLKQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 433 ~~~~~~~~---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
.++.-+.. ..-....+.+.|.++++.+++ +.+|.|.-|.+
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~~~ 398 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRYLG 398 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEeCC
Confidence 33331111 222356889999887665554 55677766543
No 454
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.10 E-value=19 Score=35.47 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=41.6
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ 180 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~ 180 (473)
+-|||....|+.-.....=.++++... +....+ ...+-|.|.+|.+||++|+.+- ..=.-++||-.
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 568888877765544444445554322 222223 3356799999999999887654 34457889854
No 455
>PRK10115 protease 2; Provisional
Probab=76.05 E-value=1e+02 Score=32.04 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=42.6
Q ss_pred CEEEEEECCCCCeEEEEecC-----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC------C
Q 011978 152 WVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------G 220 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d------g 220 (473)
.+..+.|||||++|+.+... -.|++-|+.+|+.+...+.+-. ..+.|.+ ++..|+....+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~-----D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWAN-----DSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEee-----CCCEEEEEEecCCCCCCC
Confidence 35678899999988865332 3588899988864333332211 3477765 33344433322 3
Q ss_pred cEEEEECCCC
Q 011978 221 DARIWDVSLR 230 (473)
Q Consensus 221 ~i~iwd~~~~ 230 (473)
.|..+++.++
T Consensus 200 ~v~~h~lgt~ 209 (686)
T PRK10115 200 QVWRHTIGTP 209 (686)
T ss_pred EEEEEECCCC
Confidence 6777788776
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.98 E-value=38 Score=34.43 Aligned_cols=68 Identities=13% Similarity=0.268 Sum_probs=43.5
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
...+.++.-+|.|+-++.+..||+|++|++...+....+.. ..+-..+.|... -|++...|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnh--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNH--GLVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeecc--ceEEEeccchhheee
Confidence 34577888899999999999999999999865443222211 112223444432 366666666666664
No 457
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=75.76 E-value=8 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=22.8
Q ss_pred eEEEeecCCeEEEEECCCCceeeeeec
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
.++.++.||.+.-.|..+|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 567779999999999999998887653
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.24 E-value=79 Score=30.25 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc----
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---- 185 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~---- 185 (473)
...+..++||.+++.+..-..++-||-.... .... ......+.++.|.+++..++++ ..|.+.. ....++..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 4456677888877776554444555532210 1111 1224568899999998766655 5566543 33333210
Q ss_pred -c-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEEEEEecCCCeEEEeecC
Q 011978 186 -G-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDGVIYTGSQD 260 (473)
Q Consensus 186 -~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~l~s~~~d 260 (473)
. .....-...+..+.+.+ + ..++.++..|.+.... ..++.-... .+-......+.|.+++..+..+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~-----d-~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRS-----K-KEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcC-----C-CcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 0 00111112355565543 2 3466667777666653 223321111 122345678888777777778888
Q ss_pred CeEEEE
Q 011978 261 CTIKVW 266 (473)
Q Consensus 261 ~~i~~w 266 (473)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877554
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.42 E-value=15 Score=31.19 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=35.1
Q ss_pred CeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCCCCeEEEEe
Q 011978 121 RQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s~~ 169 (473)
+.|+.+...+.|.+|++... +++..+.. -+.|..+.++..|++|++-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 55555566788999999833 34444443 37799999999999999853
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=74.20 E-value=95 Score=30.68 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCCcEEEEEECCCcEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 011978 370 PDGQWVASASFDKSIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQ 434 (473)
Q Consensus 370 p~g~~lasgs~d~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~ 434 (473)
-+|+..+.|+ .+.+||..+.+.... +.........+ .-+|+..+.|+.+ .+|..||..+.
T Consensus 406 ~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 406 FGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 3566666663 577899887654322 11111112122 2366777777654 24556665543
No 461
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.34 E-value=74 Score=29.49 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=60.0
Q ss_pred cceeEEEECCCCcEEEEEECCCc------EEEEeCCC--C--ceEE-----EeeCCcc--------CEEEEEEecCCCEE
Q 011978 361 QLVNHVYFSPDGQWVASASFDKS------IKLWNGTT--G--KFVA-----VFRGHVG--------PVYQISWSADSRLL 417 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~------v~lwd~~~--~--~~~~-----~~~~h~~--------~v~~v~~sp~g~~l 417 (473)
+.++.+++.|++..+++.|++|. +..+++.. + ..+. .+..-.+ -.-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34677888865555666677776 55555432 1 1111 1111112 22367887888888
Q ss_pred EEEeCC------CcEEEEECCCCceeecc--c-------------ccCCCEEEEEEeeCCCEEEEEe
Q 011978 418 LSGSKD------STLKVWDIRTQKLKQDL--P-------------GHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 418 ~s~s~D------g~i~iwd~~~~~~~~~~--~-------------~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
++.-.+ -.|+.++.. ++....+ + ..+...-+|+++|||+.|.++.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 876666 678888866 4433222 1 1234577899999999666554
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.57 E-value=44 Score=26.08 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=59.1
Q ss_pred EECCCCCeEEEEeCCCeEEEEeCCCCc--------eeEEEcCCCCCEEEEEECC-----CCCeEEEEecCCeEEEeeCCC
Q 011978 115 AFSPDGRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 115 ~~sp~~~~lat~s~d~~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~s~-----dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.|......|+.++.-|.|-|++..... ++..+ .-...|++|+-.+ +...|+.| ....+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 455556678888888899999865332 11112 2345677776432 23345554 457889999876
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
.... ....-.+.++++.+-... .....++..+.+..|.-+|..
T Consensus 83 N~d~--Fyke~~DGvn~i~~g~~~--~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDL--FYKEVPDGVNAIVIGKLG--DIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchh--hhhhCccceeEEEEEecC--CCCCcEEEECceEEEEEeCCC
Confidence 5432 223334556666553221 112234444445555555543
No 463
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=71.46 E-value=13 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=17.4
Q ss_pred eeEEEECCCCcEEEEEECCCcEEEE
Q 011978 363 VNHVYFSPDGQWVASASFDKSIKLW 387 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d~~v~lw 387 (473)
...++++++|+.+++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567788888877776666666654
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.33 E-value=1.1e+02 Score=33.25 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=24.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLN 138 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~ 138 (473)
....++|+|.-..+|.+...|.|++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34568999999999999999999999654
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.81 E-value=10 Score=38.13 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=42.8
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 403 GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
..++++.-+|.|+-+++++.||.|++|+....+..+.+. ...+-..+.|...| |+++.+|.++.-|
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAW 80 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhhee
Confidence 356777778999999999999999999986543322111 12233455566444 5666666665555
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.06 E-value=1.1e+02 Score=29.54 Aligned_cols=141 Identities=11% Similarity=0.199 Sum_probs=79.5
Q ss_pred CceEEEecCCceEEEEeCCCCCCC-eee--ecCcccceeEEEECC-----CCcEEEEEECCCcEEEEeCC--CCc-----
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQP-KTR--MTGHQQLVNHVYFSP-----DGQWVASASFDKSIKLWNGT--TGK----- 393 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~~~v~~v~~sp-----~g~~lasgs~d~~v~lwd~~--~~~----- 393 (473)
.+.++.|+..|.++++++...... ... -..-..+|..++.-+ +...||.- .-+.+.+|.+. .|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence 467999999999999998543311 111 112234566665432 22344443 34567777652 111
Q ss_pred --eEEEeeCCccC--EEEEEEec----C-CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 394 --FVAVFRGHVGP--VYQISWSA----D-SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 394 --~~~~~~~h~~~--v~~v~~sp----~-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
.+.....|.-. ...+++-| . -.++..=|.||.+.+|+-+.......+++ .----.+.|.+.-..+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 12222234322 22233323 2 24788889999999999876544444443 111124677787888888888
Q ss_pred CCcEEec
Q 011978 465 DRVLKLW 471 (473)
Q Consensus 465 D~~i~~w 471 (473)
+..+..|
T Consensus 195 s~~l~~Y 201 (418)
T PF14727_consen 195 SWTLECY 201 (418)
T ss_pred ceeEEEe
Confidence 8777655
No 467
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=69.37 E-value=23 Score=32.25 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=48.8
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccC-----EEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-----VYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~-----v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
-+++|...++|.+|++.-.-.+|.+.|.++|+.+-.+.+..+. -...+|-.|-+++-.+..+++|.++|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 3778888999999999998899999999999988887665221 111333333344444456777777775
No 468
>PRK13684 Ycf48-like protein; Provisional
Probab=69.09 E-value=99 Score=28.77 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=63.1
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC----CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG----HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~----h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
...++++++.|+++.++.|. .|.+++=+...|..-..... -...+.++.+.|++..+++ +.+|.+. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC
Confidence 35688899999999877764 56654323344432221111 1235788999998876554 4577554 3444443
Q ss_pred eeeccc---ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 436 LKQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 436 ~~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.-+..+ +-....+.+.|..+++.++ ++..|.|.-|.
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 322221 2223577888887766655 55567776654
No 469
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=68.17 E-value=34 Score=35.94 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=48.4
Q ss_pred CcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEE-EeCCC-----cEEEEECCCC-ceeecccccCCCEEEEEEe
Q 011978 382 KSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLS-GSKDS-----TLKVWDIRTQ-KLKQDLPGHADEVFAVDWS 453 (473)
Q Consensus 382 ~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s-~s~Dg-----~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s 453 (473)
+.+.+-|......... ++ +..+|.+-+|||||++||- .+.++ .|++-|+.+. ..+-.++-....|-.-...
T Consensus 329 ~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 4677777765554433 33 5778999999999999987 55555 4888888752 2223344344555555555
Q ss_pred eCCCE
Q 011978 454 PDGEK 458 (473)
Q Consensus 454 ~d~~~ 458 (473)
++|..
T Consensus 408 e~gdt 412 (912)
T TIGR02171 408 ENGDT 412 (912)
T ss_pred CCCCe
Confidence 55543
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=76 Score=26.97 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEE-EecCCeEEEeeCCCCcccc
Q 011978 119 DGRQLASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 119 ~~~~lat~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i~iwd~~~~~~~~ 186 (473)
+|.++.+.+ +...|++||+.+++.+.+.+-....+..=....-|..+.. .-.+|.-..+|..+-+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 345555554 3457999999988876543211111110000111233332 2346777788877665443
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.54 E-value=26 Score=29.84 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=34.8
Q ss_pred cEEEEEECCCcEEEEeCCC--CceEEEeeCCccCEEEEEEecCCCEEEEEeC
Q 011978 373 QWVASASFDKSIKLWNGTT--GKFVAVFRGHVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 373 ~~lasgs~d~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
..|..+.....|.+|++.. .+....|.- -+.|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 3343334556799999883 345566653 478999999999999998643
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=67.40 E-value=74 Score=33.63 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=59.9
Q ss_pred ceeEEEECC-CCcEEEEEECCCcEEEEeCCCC-----ceEEEeeCCccC----------EEEEEEecCCCEEEEEeCCCc
Q 011978 362 LVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-----KFVAVFRGHVGP----------VYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 362 ~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~-----~~~~~~~~h~~~----------v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
....++|+| +.+.||.....|...|||+..+ ..+.....+.+. -..+.|.++-..|+.++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 355789998 5568999999999999999211 111111122222 347889888777777754 56
Q ss_pred EEEEECCCCceeecc--cccCCCEEEEEEeeC
Q 011978 426 LKVWDIRTQKLKQDL--PGHADEVFAVDWSPD 455 (473)
Q Consensus 426 i~iwd~~~~~~~~~~--~~h~~~i~~l~~s~d 455 (473)
+.++|+.+......+ ......|..+.-+|+
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 899999876442211 223356777777776
No 473
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=67.14 E-value=92 Score=27.67 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=54.8
Q ss_pred EEEEEECCCCCeEEEEecCC--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978 153 VLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
-..+.|..+|..+-+.+.-| .|+.+|+.+|+......-...-.-.+++.. ....+.--=.++...+||..+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEESSSSEEEEEETTTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE------CCEEEEEEecCCeEEEEccccc
Confidence 34677767787777887776 689999999875422111111111111111 0111222223566777777776
Q ss_pred eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceee
Q 011978 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275 (473)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 275 (473)
+.+..+.-. ..=+.++.+.+ .|+.+.....+.++|..+-+..+
T Consensus 121 ~~~~~~~y~-~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp EEEEEEE-S-SS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEE
T ss_pred eEEEEEecC-CcceEEEcCCC-EEEEECCccceEEECCcccceEE
Confidence 665554321 22233443322 34444445566666655544333
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.30 E-value=46 Score=23.88 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=28.3
Q ss_pred ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
..+|.+--||..+++....+.+ -..-+.|+.++|+.+|+.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 3457788899998876544443 34678999999999877653
No 475
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=83 Score=26.76 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=45.3
Q ss_pred CCCcEEEEEECCCcEEEEeCCCCceEE----EeeCC-ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-----
Q 011978 370 PDGQWVASASFDKSIKLWNGTTGKFVA----VFRGH-VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD----- 439 (473)
Q Consensus 370 p~g~~lasgs~d~~v~lwd~~~~~~~~----~~~~h-~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~----- 439 (473)
.|+.-|..++...+++.-|..+..... ++.+. -..++.+.|- ||...|-.=.+..|...|..+|+...-
T Consensus 138 ~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 138 SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 345556555555567776765543222 22221 1223444443 444444333344444445555544321
Q ss_pred -------ccccCCCEEEEEEeeCC-CEEEEE
Q 011978 440 -------LPGHADEVFAVDWSPDG-EKVASG 462 (473)
Q Consensus 440 -------~~~h~~~i~~l~~s~d~-~~l~s~ 462 (473)
-..|.+-.+.+++.|++ +++++|
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CchhcCccccccccccceeecCcCCeEEEec
Confidence 12234456789999988 455555
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=64.99 E-value=41 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCEEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 011978 403 GPVYQISWSADSRLLLSGS-KDSTLKVWDIR 432 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~ 432 (473)
...+.+.++|++++|..++ ..+.|++|..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3557899999999888776 46789999764
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.12 E-value=44 Score=23.96 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=32.0
Q ss_pred EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe--CCCcEEecc
Q 011978 420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLWM 472 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~~w~ 472 (473)
+..+|.+.-||..+++....+.+ -..-+.++.++|+.+|+.+= .-+..|.|-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 44567888999998876444443 23568999999999776542 334455553
No 478
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=63.32 E-value=5.8 Score=39.21 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=55.3
Q ss_pred EEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCce-----eeccccc-C----CCEEEEEEee
Q 011978 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS-TLKVWDIRTQKL-----KQDLPGH-A----DEVFAVDWSP 454 (473)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg-~i~iwd~~~~~~-----~~~~~~h-~----~~i~~l~~s~ 454 (473)
+=|..+...+..|+.|..++..++|.+.|..+++++..| .|.++.+..... .+.+.-| . ..|..++|+.
T Consensus 299 vkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~ 378 (788)
T KOG2109|consen 299 VKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSE 378 (788)
T ss_pred eecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhh
Confidence 335666677778999999999999999999999999776 466665433211 1112112 1 1233468888
Q ss_pred CCCEEEEEeCCCc
Q 011978 455 DGEKVASGGKDRV 467 (473)
Q Consensus 455 d~~~l~s~~~D~~ 467 (473)
..++.+.++.+|.
T Consensus 379 ~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 379 VSTIRTAGSCEGE 391 (788)
T ss_pred hcceEeecccCCC
Confidence 8888887777663
No 479
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.15 E-value=2.1e+02 Score=29.62 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEec
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSA 412 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp 412 (473)
..+..+.+||++++||-=..+|.+.+-+.+..+.+..+. .|. +--.++|.-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 456778999999999999999999998877666655554 232 222555543
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.97 E-value=39 Score=29.66 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=45.4
Q ss_pred EEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeC-CC--cEEEEECCC----Ccee---ecccccCCCEEEEEEee
Q 011978 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSK-DS--TLKVWDIRT----QKLK---QDLPGHADEVFAVDWSP 454 (473)
Q Consensus 385 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-Dg--~i~iwd~~~----~~~~---~~~~~h~~~i~~l~~s~ 454 (473)
.+||+.+++....--...-.+.+=.+-|||++|.+|+. || .+++++... ..-. ..+. ..+.--.+.--|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECC
Confidence 47888777543322222233444456789999999875 33 588887643 0100 0111 112222344568
Q ss_pred CCCEEEEEeCCC
Q 011978 455 DGEKVASGGKDR 466 (473)
Q Consensus 455 d~~~l~s~~~D~ 466 (473)
||+.|+.||.+.
T Consensus 128 DG~vlIvGG~~~ 139 (243)
T PF07250_consen 128 DGRVLIVGGSNN 139 (243)
T ss_pred CCCEEEEeCcCC
Confidence 999999888763
No 481
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.71 E-value=1.5e+02 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
+-...++++.|+|+.+.|++......-.+|-..+|+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir 121 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR 121 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEE
Confidence 334459999999999999998888877777666676543
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=56.52 E-value=1.6e+02 Score=26.78 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=53.3
Q ss_pred eeEEEECC---CCcEEEEEECCCcEEEEeCCC-----Cc---------eEEEeeCCccCEEEEEEecCCCEEEEEeCCCc
Q 011978 363 VNHVYFSP---DGQWVASASFDKSIKLWNGTT-----GK---------FVAVFRGHVGPVYQISWSADSRLLLSGSKDST 425 (473)
Q Consensus 363 v~~v~~sp---~g~~lasgs~d~~v~lwd~~~-----~~---------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~ 425 (473)
+..++.+| +|++|.-+...+ -++|.+.+ .. .+..+-...+....++++++|.++.+--..+.
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a 208 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA 208 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE
T ss_pred ccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe
Confidence 56677765 777888776544 23333221 10 11222111135567888999998888888999
Q ss_pred EEEEECCCCc---eeecccc---cCCCEEEEEEee--CCCEEEEE
Q 011978 426 LKVWDIRTQK---LKQDLPG---HADEVFAVDWSP--DGEKVASG 462 (473)
Q Consensus 426 i~iwd~~~~~---~~~~~~~---h~~~i~~l~~s~--d~~~l~s~ 462 (473)
|..|+....- ....+.. .-....++.+.+ +|...+..
T Consensus 209 I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 209 IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999987621 1111211 123567888888 77655544
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=56.32 E-value=45 Score=30.43 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=46.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCE-----EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV-----FAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i-----~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
-+++|...++|.+|+|+-.=.+|.+.|-.+++.+-.+.|....- ...+|-.|-+++-.+..+++|.||+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 36777778899999998888889999988888877776542111 1244445555555556667777664
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=55.76 E-value=2e+02 Score=27.79 Aligned_cols=16 Identities=19% Similarity=0.136 Sum_probs=11.1
Q ss_pred EEEeecCCeEEEEECC
Q 011978 254 IYTGSQDCTIKVWETT 269 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~ 269 (473)
.+....|..+.+|+..
T Consensus 39 ~Aw~~~d~~l~vW~Y~ 54 (422)
T PF08801_consen 39 RAWIVVDNRLYVWNYS 54 (422)
T ss_dssp EEEEEETTEEEEEE--
T ss_pred EEEEEECCEEEEEecc
Confidence 4556678999999984
No 485
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.62 E-value=1.6e+02 Score=26.76 Aligned_cols=111 Identities=14% Similarity=0.258 Sum_probs=65.3
Q ss_pred eeEEEECCCCcEEEEEECCCcEEEEeCC------CC-ceEEEeeC-----CccCEEEEEEecCCCE------------EE
Q 011978 363 VNHVYFSPDGQWVASASFDKSIKLWNGT------TG-KFVAVFRG-----HVGPVYQISWSADSRL------------LL 418 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d~~v~lwd~~------~~-~~~~~~~~-----h~~~v~~v~~sp~g~~------------l~ 418 (473)
-+.|+++|.+.+-++....+...+||.. .. .++..+.. ..+..+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999988888888899999986 12 22333331 1235677777743332 56
Q ss_pred EEeCCCcEEEEECCCCce-----eeccc-ccCCCEE-EEEEe--eCCCEEEEEe-CCCcEEeccC
Q 011978 419 SGSKDSTLKVWDIRTQKL-----KQDLP-GHADEVF-AVDWS--PDGEKVASGG-KDRVLKLWMG 473 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~-----~~~~~-~h~~~i~-~l~~s--~d~~~l~s~~-~D~~i~~w~~ 473 (473)
.++.||+|.-|....... ...+. +....|+ .|++- ..+.+|..+. ..++|.+|++
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 778999999998532211 11121 1123343 34443 2245554443 5677777753
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=54.87 E-value=1.9e+02 Score=27.28 Aligned_cols=218 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred CceEEEeeCCCcEEEEECCCCeEEEEecCcc--ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccC--ceEE
Q 011978 210 CRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG--HWVN 285 (473)
Q Consensus 210 ~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~ 285 (473)
...+..+..+|.+.-.|..+++.+.....-. ..+.+-....+|.++.++.++.+..+|..+|+.+....... ....
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Q ss_pred EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-cccee
Q 011978 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVN 364 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~ 364 (473)
....... .+...+.++.+.-.+.............. .....
T Consensus 148 ~~v~~~~--------------------------------------~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 148 PPVVGDG--------------------------------------TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CcEEcCc--------------------------------------EEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Q ss_pred EEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEEE--ecC--------CCEEEEEeCCCcEEEEECC
Q 011978 365 HVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQISW--SAD--------SRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~--sp~--------g~~l~s~s~Dg~i~iwd~~ 432 (473)
.-........+..+.. ++.+.-.|..+|......+ +...+..-.. .|+ +.-+..++.++.+...|..
T Consensus 190 ~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~-~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~ 268 (370)
T COG1520 190 YGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK-VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDAD 268 (370)
T ss_pred ccCceeecceEEEecCCCcceEEEEEccCCcEeeeee-eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcC
Q ss_pred CCceeecccccCCCEEEEEEeeCCCEEEEEeC-CCcEEecc
Q 011978 433 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGK-DRVLKLWM 472 (473)
Q Consensus 433 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~~w~ 472 (473)
+++.+-..+.. ..-...+-+...... ||.+.++.
T Consensus 269 ~G~~~W~~~~~------~~~~~~~~~~~~~~~~dG~v~~~~ 303 (370)
T COG1520 269 TGELIWSFPAG------GSVQGSGLYTTPVAGADGKVYIGF 303 (370)
T ss_pred CCceEEEEecc------cEeccCCeeEEeecCCCccEEEEE
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=54.55 E-value=2.3e+02 Score=28.05 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=45.9
Q ss_pred CCcEEEEEECCC---cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eecccccCC
Q 011978 371 DGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLPGHAD 445 (473)
Q Consensus 371 ~g~~lasgs~d~---~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~h~~ 445 (473)
+|+..+.|+.++ .+..||..+.+....-.-....-...+..-+|+..+.|+ .+.+||..+.+= ...++....
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~ 438 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD 438 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc
Confidence 677778877653 477888877654332111100001111234566666663 577888876432 233332122
Q ss_pred CEEEEEEeeCCCEEEEEeCC
Q 011978 446 EVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~~D 465 (473)
.. +++ .-+|+..+.||.+
T Consensus 439 ~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 439 NP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred cc-EEE-EECCEEEEECCcC
Confidence 22 222 2367788888765
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.52 E-value=1.7e+02 Score=26.39 Aligned_cols=94 Identities=14% Similarity=0.256 Sum_probs=54.0
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE------CCCcEEEEeCCCCceEEEeeC----CccCEEEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS------FDKSIKLWNGTTGKFVAVFRG----HVGPVYQI 408 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs------~d~~v~lwd~~~~~~~~~~~~----h~~~v~~v 408 (473)
..+++||....+- ...-.+-.+.|+++.|..+.++++.|. ....+..||..+......-.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 3578888543221 111122346799999997888888875 345688899877654322221 23788888
Q ss_pred EEec-CC-CEEEEEe-CCC--cEEEEECCC
Q 011978 409 SWSA-DS-RLLLSGS-KDS--TLKVWDIRT 433 (473)
Q Consensus 409 ~~sp-~g-~~l~s~s-~Dg--~i~iwd~~~ 433 (473)
.+.. |+ ++.+.|. .+| .|..||=..
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7743 33 3443433 344 466676443
No 489
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=50.67 E-value=38 Score=17.99 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.8
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 446 EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|.+++.++ ++++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 467777664 5899999999999984
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.03 E-value=31 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 011978 413 DSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999998764
No 491
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=48.78 E-value=3.2e+02 Score=28.11 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=27.8
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeC
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~ 137 (473)
.+.|..+.|.++++.++..-..|.|.+||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 567889999999999999999999999998
No 492
>PRK13615 lipoprotein LpqB; Provisional
Probab=48.59 E-value=2.5e+02 Score=28.34 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=54.8
Q ss_pred eEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC-Cceee-ccc
Q 011978 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQ-DLP 441 (473)
Q Consensus 364 ~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~-~~~ 441 (473)
.+++.++++..+|....++.+.++... +.....+.+. .++.-.|.++| .+=+.-.+...++..... +.... ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~--~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRP--GLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCC--ccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999999988878878887655 2222223222 34555566665 333332222333333221 22211 111
Q ss_pred c-cCCCEEEEEEeeCCCEEEEEe
Q 011978 442 G-HADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 442 ~-h~~~i~~l~~s~d~~~l~s~~ 463 (473)
- -...|..+..|+||-.++...
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~ 435 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQL 435 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEE
Confidence 1 235799999999999887643
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=48.34 E-value=1.9e+02 Score=25.43 Aligned_cols=65 Identities=28% Similarity=0.509 Sum_probs=40.2
Q ss_pred EECCCCCeEEEEeC---CCeEEEEeCCCC--cee-EE---EcCCCCCEEEEEECCCCCeEEEEecCC-eEEEeeC
Q 011978 115 AFSPDGRQLASGSG---DTTVRLWDLNTQ--TPM-FK---CTGHKNWVLCIAWSADGKHLVSGSKAG-ELQCWDP 179 (473)
Q Consensus 115 ~~sp~~~~lat~s~---d~~i~iwd~~~~--~~~-~~---~~~~~~~v~~l~~s~dg~~l~s~~~dg-~i~iwd~ 179 (473)
+|-|||++|.+|+. ...+|+++..+. .+. .. .-....|-.++.--|||+.|+.|+... +..+|..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCC
Confidence 46789999998863 346888886441 111 10 012344555666678999999988774 3445543
No 494
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=47.09 E-value=4e+02 Score=28.70 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeecc-cccCCCE
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQKLKQDL-PGHADEV 447 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~~~~~~-~~h~~~i 447 (473)
+|++||.- ...|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+.+.+-..+ .+.....- .-+...+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wm 916 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWM 916 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccce
Confidence 67777754 4579999999998887777888999999999999999999877766654433 33333211 1244566
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEe
Q 011978 448 FAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
+++.+-.+. .++-+..++.+.+
T Consensus 917 taveil~~d-~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 917 TAVEILDDD-TYLGAENSGNLFT 938 (1096)
T ss_pred eeEEEecCc-eEEeecccccEEE
Confidence 676665443 4444555555443
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=46.91 E-value=67 Score=30.69 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=85.8
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEE-cCCCC----CEE-EEEECCCCCeEEEEecCCeEEEe
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKC-TGHKN----WVL-CIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~-~~~~~----~v~-~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
..-...|..+-+.|||+.|..-++ .++.++++.+.... .++ ....+ .|. .+..-..|.-|+.+..||-|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 334456778889999999877665 78899988654311 111 11111 111 11122345678888899998877
Q ss_pred -eCCCCccccccCCCcCCcEEEEEecee-----ccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978 178 -DPQTGKPSGNPLSGHKKWITGISWEPV-----HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 178 -d~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (473)
|...+... |-..+....+.|. ......+-|++-...|++..+.-...+.+..-. -...+.-++++++
T Consensus 296 Fdvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~ 368 (733)
T COG4590 296 FDVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN 368 (733)
T ss_pred eeeecCCCC------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc
Confidence 44333211 1111111111111 111223457777788888777644433332111 1123445677777
Q ss_pred CeEEEeecCCeEEEEECCCCc
Q 011978 252 GVIYTGSQDCTIKVWETTQGK 272 (473)
Q Consensus 252 ~~l~s~~~d~~i~~wd~~~~~ 272 (473)
+--+..-+.|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 654455667888988876543
No 496
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=3.8e+02 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=30.6
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 439 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~ 439 (473)
.+.+..+..||+.++|+-=..+|.|.+-++...+...+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 35688899999999999999999999888876555433
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=44.87 E-value=80 Score=33.28 Aligned_cols=67 Identities=22% Similarity=0.144 Sum_probs=50.3
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe----e-----------C----CccCEEEEEEecCCCEEEEEe
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF----R-----------G----HVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~----~-----------~----h~~~v~~v~~sp~g~~l~s~s 421 (473)
+.|.+++...-+.+++..-.||+|.++|..+.+.+... . | ...++.-++|||++.-++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45778888888889999999999999998776544333 1 0 111334588999999999999
Q ss_pred CCCcEE
Q 011978 422 KDSTLK 427 (473)
Q Consensus 422 ~Dg~i~ 427 (473)
.||.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999866
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.96 E-value=2.6e+02 Score=25.70 Aligned_cols=26 Identities=0% Similarity=-0.072 Sum_probs=17.3
Q ss_pred CCCCcEEEEEECCC----cEEEEeCCCCce
Q 011978 369 SPDGQWVASASFDK----SIKLWNGTTGKF 394 (473)
Q Consensus 369 sp~g~~lasgs~d~----~v~lwd~~~~~~ 394 (473)
..++++.+.|+.++ .+..||..+.+.
T Consensus 169 ~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 169 KLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EECCEEEEEcCCCCccccceEEEecCCCee
Confidence 34677788887654 356788877654
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=43.09 E-value=1.3e+02 Score=29.27 Aligned_cols=55 Identities=15% Similarity=0.331 Sum_probs=37.8
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeccc-----ccCCCEEEEEEeeCC
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLP-----GHADEVFAVDWSPDG 456 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~~-----~h~~~i~~l~~s~d~ 456 (473)
-..-+.++|.|||++|++--..|.|++++-..+.. ...++ ........|+++||-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 44568899999998887765579999998654322 22221 124567899999874
No 500
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=41.93 E-value=2.8e+02 Score=25.40 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=48.3
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC------CCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc-----
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG----- 403 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~----- 403 (473)
+..-|.|-++|....-..+....+.-...+.|+..| .|.+|+---.||+|..||..+|+.+..+....+
T Consensus 218 G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i 297 (336)
T TIGR03118 218 GAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV 297 (336)
T ss_pred CCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe
Confidence 334456777775432211111223334556677755 466777666799999999999998877765432
Q ss_pred -CEEEEEEec
Q 011978 404 -PVYQISWSA 412 (473)
Q Consensus 404 -~v~~v~~sp 412 (473)
.++.++|-.
T Consensus 298 ~GLWgL~fGn 307 (336)
T TIGR03118 298 DGLWSLTFGN 307 (336)
T ss_pred cCeEEeeeCC
Confidence 456777754
Done!