Query 011978
Match_columns 473
No_of_seqs 404 out of 2640
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 19:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.2E-51 4E-56 415.6 46.8 390 78-473 103-609 (611)
2 1nr0_A Actin interacting prote 100.0 1.8E-49 6.3E-54 399.6 49.2 367 99-472 50-564 (611)
3 1vyh_C Platelet-activating fac 100.0 4.6E-50 1.6E-54 384.2 41.7 308 100-472 100-408 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 5.2E-49 1.8E-53 367.6 43.6 288 100-472 47-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 1E-48 3.6E-53 362.0 39.6 286 102-472 26-318 (321)
6 2ymu_A WD-40 repeat protein; u 100.0 8.9E-48 3E-52 385.7 47.2 325 98-472 252-577 (577)
7 2pbi_B Guanine nucleotide-bind 100.0 6E-48 2.1E-52 362.1 42.0 289 100-472 56-354 (354)
8 2ynn_A Coatomer subunit beta'; 100.0 1.1E-47 3.6E-52 352.9 41.1 286 101-470 6-298 (304)
9 3iz6_a 40S ribosomal protein R 100.0 2.3E-48 7.8E-53 368.9 34.2 291 100-472 58-372 (380)
10 4gqb_B Methylosome protein 50; 100.0 6E-47 2.1E-51 352.9 35.7 283 105-472 27-328 (344)
11 4g56_B MGC81050 protein; prote 100.0 1.2E-46 4.1E-51 353.6 37.3 284 105-472 39-340 (357)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-46 1.1E-50 349.4 40.0 291 100-472 7-332 (345)
13 2ymu_A WD-40 repeat protein; u 100.0 2.7E-45 9.2E-50 367.7 47.9 324 99-472 212-536 (577)
14 1r5m_A SIR4-interacting protei 100.0 4.9E-46 1.7E-50 358.2 39.1 322 106-472 43-422 (425)
15 3frx_A Guanine nucleotide-bind 100.0 1.5E-45 5E-50 341.0 40.4 284 101-472 10-314 (319)
16 4ery_A WD repeat-containing pr 100.0 1.8E-45 6.3E-50 339.6 40.6 290 99-472 14-309 (312)
17 1pgu_A Actin interacting prote 100.0 4.6E-44 1.6E-48 361.4 48.0 368 94-472 146-611 (615)
18 1erj_A Transcriptional repress 100.0 1.2E-44 4.3E-49 344.8 39.8 287 106-472 62-386 (393)
19 2pm9_A Protein WEB1, protein t 100.0 9.2E-47 3.1E-51 362.6 25.3 327 107-472 11-411 (416)
20 2xzm_R RACK1; ribosome, transl 100.0 3.1E-44 1.1E-48 335.8 40.5 283 101-472 14-337 (343)
21 2hes_X YDR267CP; beta-propelle 100.0 1.9E-44 6.4E-49 335.2 37.9 288 100-472 6-325 (330)
22 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-43 6.5E-48 368.5 47.4 360 105-472 55-658 (902)
23 1gxr_A ESG1, transducin-like e 100.0 1.4E-43 4.7E-48 330.3 38.0 320 107-472 8-334 (337)
24 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-43 1.3E-47 366.2 39.5 356 105-472 14-602 (902)
25 4aow_A Guanine nucleotide-bind 100.0 5E-42 1.7E-46 320.3 41.9 286 100-472 30-334 (340)
26 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.2E-42 2.5E-46 331.6 43.1 317 101-472 111-439 (445)
27 3sfz_A APAF-1, apoptotic pepti 100.0 3.2E-42 1.1E-46 375.1 44.5 342 101-472 608-1031(1249)
28 3vl1_A 26S proteasome regulato 100.0 2.5E-43 8.5E-48 339.2 30.0 341 109-472 57-416 (420)
29 1pgu_A Actin interacting prote 100.0 1.6E-41 5.4E-46 342.8 44.2 364 99-472 54-569 (615)
30 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-42 6.5E-47 376.8 38.3 388 78-472 615-1155(1249)
31 3dm0_A Maltose-binding peripla 100.0 1.7E-41 5.7E-46 347.1 40.4 284 102-472 376-690 (694)
32 3zwl_B Eukaryotic translation 100.0 5.5E-41 1.9E-45 316.7 40.1 284 102-472 26-343 (369)
33 1sq9_A Antiviral protein SKI8; 100.0 7E-42 2.4E-46 326.5 33.8 293 101-472 9-392 (397)
34 1vyh_C Platelet-activating fac 100.0 1.9E-41 6.5E-46 324.5 34.4 291 78-432 108-410 (410)
35 3ow8_A WD repeat-containing pr 100.0 4.7E-41 1.6E-45 310.7 35.8 247 101-432 73-320 (321)
36 3v7d_B Cell division control p 100.0 4.6E-40 1.6E-44 320.7 44.5 321 101-471 114-459 (464)
37 3gre_A Serine/threonine-protei 100.0 1.1E-41 3.7E-46 329.6 31.1 318 98-472 52-437 (437)
38 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-40 7.4E-45 305.4 38.3 281 99-472 9-293 (313)
39 1k8k_C P40, ARP2/3 complex 41 100.0 9.4E-41 3.2E-45 315.7 36.7 300 105-472 5-358 (372)
40 3i2n_A WD repeat-containing pr 100.0 3.7E-41 1.3E-45 316.6 33.2 290 103-472 13-350 (357)
41 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-40 5.2E-45 346.7 40.5 329 101-472 6-383 (814)
42 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-43 2.4E-47 341.4 21.4 303 123-472 176-514 (524)
43 3ei3_B DNA damage-binding prot 100.0 8.9E-41 3.1E-45 317.4 35.0 285 103-472 68-379 (383)
44 4gqb_B Methylosome protein 50; 100.0 1.6E-40 5.4E-45 309.5 34.7 245 106-436 80-334 (344)
45 2ynn_A Coatomer subunit beta'; 100.0 2.2E-40 7.6E-45 304.1 34.8 246 143-472 6-256 (304)
46 2pm7_B Protein transport prote 100.0 3E-40 1E-44 302.2 35.0 258 103-472 4-282 (297)
47 3k26_A Polycomb protein EED; W 100.0 4.6E-41 1.6E-45 316.9 26.7 312 103-472 13-363 (366)
48 4h5i_A Guanine nucleotide-exch 100.0 2.3E-40 8E-45 311.6 30.3 288 109-472 15-340 (365)
49 4e54_B DNA damage-binding prot 100.0 1.9E-40 6.6E-45 320.3 29.7 288 102-472 113-427 (435)
50 3dwl_C Actin-related protein 2 100.0 5.2E-41 1.8E-45 318.3 23.6 298 106-472 9-376 (377)
51 1gxr_A ESG1, transducin-like e 100.0 1.6E-38 5.4E-43 296.0 39.9 282 105-432 48-336 (337)
52 1got_B GT-beta; complex (GTP-b 100.0 7.8E-39 2.7E-43 298.7 37.0 246 142-472 47-298 (340)
53 1yfq_A Cell cycle arrest prote 100.0 1.4E-39 4.8E-44 304.1 31.4 275 104-467 7-315 (342)
54 4a11_B DNA excision repair pro 100.0 1.5E-38 5.2E-43 304.3 38.5 330 100-472 35-402 (408)
55 4gga_A P55CDC, cell division c 100.0 1.8E-38 6.3E-43 305.1 39.2 276 111-472 108-392 (420)
56 3frx_A Guanine nucleotide-bind 100.0 1.2E-38 4.3E-43 294.5 36.5 251 101-434 58-318 (319)
57 1r5m_A SIR4-interacting protei 100.0 5.7E-39 2E-43 308.8 34.8 312 131-472 26-358 (425)
58 3bg1_A Protein SEC13 homolog; 100.0 9.7E-40 3.3E-44 301.5 26.9 262 103-472 8-290 (316)
59 2pm9_A Protein WEB1, protein t 100.0 1.1E-39 3.6E-44 313.4 26.9 290 105-434 64-415 (416)
60 2pbi_B Guanine nucleotide-bind 100.0 3.1E-38 1.1E-42 296.1 36.0 273 77-430 63-354 (354)
61 3dw8_B Serine/threonine-protei 100.0 2.9E-39 1E-43 313.4 29.4 291 106-472 26-443 (447)
62 4aez_A CDC20, WD repeat-contai 100.0 1.8E-38 6.1E-43 303.3 34.4 279 104-472 87-377 (401)
63 4g56_B MGC81050 protein; prote 100.0 5.7E-39 1.9E-43 301.3 30.4 247 102-434 88-344 (357)
64 4ggc_A P55CDC, cell division c 100.0 1.8E-37 6.3E-42 286.5 39.6 277 111-473 28-313 (318)
65 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-38 1.2E-42 294.8 34.2 250 142-472 7-280 (345)
66 1p22_A F-BOX/WD-repeat protein 100.0 3.6E-38 1.2E-42 304.6 34.7 270 105-472 130-411 (435)
67 3mmy_A MRNA export factor; mRN 100.0 5.8E-38 2E-42 295.8 34.6 288 100-471 31-342 (368)
68 1erj_A Transcriptional repress 100.0 1E-37 3.4E-42 297.1 35.6 252 109-433 124-389 (393)
69 3iz6_a 40S ribosomal protein R 100.0 1.7E-38 5.7E-43 301.1 28.9 283 77-435 65-377 (380)
70 2xzm_R RACK1; ribosome, transl 100.0 2.8E-37 9.7E-42 288.5 35.6 253 101-434 69-341 (343)
71 4a11_B DNA excision repair pro 100.0 9.1E-38 3.1E-42 298.9 32.3 305 128-472 21-362 (408)
72 2hes_X YDR267CP; beta-propelle 100.0 3.1E-37 1.1E-41 286.6 34.3 250 140-472 4-277 (330)
73 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-36 5.6E-41 316.3 38.5 288 143-472 6-299 (814)
74 2j04_B YDR362CP, TAU91; beta p 100.0 4E-38 1.4E-42 307.9 24.4 286 103-433 202-517 (524)
75 3vl1_A 26S proteasome regulato 100.0 2E-36 6.7E-41 291.1 34.9 290 101-433 91-419 (420)
76 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-37 1.2E-41 293.7 29.1 292 107-464 14-350 (588)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-35 3.4E-40 288.4 39.6 282 98-433 149-442 (445)
78 4ery_A WD repeat-containing pr 100.0 1.1E-35 3.7E-40 274.1 37.9 252 99-432 56-311 (312)
79 3f3f_A Nucleoporin SEH1; struc 100.0 6.3E-37 2.1E-41 286.3 29.3 291 102-472 5-334 (351)
80 3jrp_A Fusion protein of prote 100.0 2.1E-36 7.1E-41 286.5 31.7 255 100-432 3-286 (379)
81 3v7d_B Cell division control p 100.0 1.7E-35 5.7E-40 288.5 38.7 282 98-429 152-459 (464)
82 4gga_A P55CDC, cell division c 100.0 2.1E-35 7E-40 283.8 35.2 276 90-452 125-414 (420)
83 3dm0_A Maltose-binding peripla 100.0 1.9E-35 6.3E-40 302.4 36.9 249 101-433 423-693 (694)
84 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-35 8.5E-40 276.4 34.2 287 134-472 3-333 (355)
85 4aow_A Guanine nucleotide-bind 100.0 1.6E-34 5.4E-39 269.5 38.5 252 100-435 78-339 (340)
86 3jrp_A Fusion protein of prote 100.0 4.3E-35 1.5E-39 277.4 31.1 250 143-472 4-284 (379)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-35 5.6E-40 283.0 28.1 278 111-472 37-339 (402)
88 4aez_A CDC20, WD repeat-contai 100.0 1.2E-34 4.1E-39 276.8 33.4 247 106-439 132-386 (401)
89 3dwl_C Actin-related protein 2 100.0 4.8E-36 1.6E-40 284.1 22.9 242 148-471 9-278 (377)
90 1sq9_A Antiviral protein SKI8; 100.0 8.7E-35 3E-39 277.4 29.7 264 100-435 54-397 (397)
91 3i2n_A WD repeat-containing pr 100.0 1.7E-34 5.9E-39 271.0 31.1 255 105-435 62-355 (357)
92 3k26_A Polycomb protein EED; W 100.0 3.9E-35 1.3E-39 276.3 25.9 254 107-432 68-365 (366)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.6E-34 1.2E-38 277.8 32.5 278 109-472 5-388 (450)
94 3gre_A Serine/threonine-protei 100.0 1.1E-35 3.8E-40 287.4 21.5 281 115-472 34-356 (437)
95 4gq1_A NUP37; propeller, trans 100.0 1E-35 3.5E-40 283.1 20.6 258 158-469 97-384 (393)
96 3zwl_B Eukaryotic translation 100.0 1.8E-33 6E-38 265.2 35.4 254 98-437 64-350 (369)
97 3jro_A Fusion protein of prote 100.0 1.1E-34 3.8E-39 298.4 28.9 248 102-472 3-282 (753)
98 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-33 4.7E-38 266.5 31.9 245 147-472 5-271 (372)
99 2j04_A TAU60, YPL007P, hypothe 100.0 7.9E-35 2.7E-39 277.6 23.3 259 148-472 13-294 (588)
100 4h5i_A Guanine nucleotide-exch 100.0 3.4E-34 1.2E-38 269.5 26.6 246 103-433 68-343 (365)
101 2w18_A PALB2, fancn, partner a 100.0 2E-33 6.8E-38 251.9 29.6 275 110-472 41-354 (356)
102 3lrv_A PRE-mRNA-splicing facto 100.0 3E-34 1E-38 268.1 24.9 274 114-472 42-330 (343)
103 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-32 8E-37 251.6 36.0 248 100-439 51-302 (313)
104 4ggc_A P55CDC, cell division c 100.0 1.7E-32 5.8E-37 253.2 35.1 258 90-434 45-316 (318)
105 3ei3_B DNA damage-binding prot 100.0 3.1E-33 1.1E-37 265.4 30.0 247 138-472 61-336 (383)
106 3dw8_B Serine/threonine-protei 100.0 1.2E-33 4.1E-38 273.9 27.5 248 148-472 26-370 (447)
107 2xyi_A Probable histone-bindin 100.0 2.1E-33 7.1E-38 270.6 28.6 250 103-434 123-411 (430)
108 2xyi_A Probable histone-bindin 100.0 4.6E-33 1.6E-37 268.2 31.0 246 188-472 123-407 (430)
109 3bws_A Protein LP49; two-domai 100.0 9.3E-32 3.2E-36 259.5 38.3 318 108-472 60-429 (433)
110 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-33 2E-37 268.1 28.9 259 99-453 164-433 (435)
111 4e54_B DNA damage-binding prot 100.0 1.8E-33 6E-38 271.6 24.8 268 101-437 157-434 (435)
112 3vu4_A KMHSV2; beta-propeller 100.0 1E-32 3.5E-37 258.6 28.4 279 103-434 14-337 (355)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 1.8E-32 6.2E-37 261.8 28.6 253 100-436 73-345 (402)
114 1l0q_A Surface layer protein; 100.0 1.4E-30 4.9E-35 247.7 39.8 304 121-472 3-339 (391)
115 1yfq_A Cell cycle arrest prote 100.0 7E-32 2.4E-36 251.8 26.9 247 147-472 8-279 (342)
116 4gq1_A NUP37; propeller, trans 100.0 2.7E-32 9.1E-37 259.5 23.7 263 103-432 84-388 (393)
117 2pm7_B Protein transport prote 100.0 3.4E-31 1.2E-35 242.1 28.5 204 235-472 4-235 (297)
118 3bg1_A Protein SEC13 homolog; 100.0 1.5E-30 5.2E-35 239.9 27.2 216 100-390 49-292 (316)
119 3bws_A Protein LP49; two-domai 100.0 9.7E-30 3.3E-34 245.4 33.8 279 109-433 123-432 (433)
120 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-31 1.4E-35 246.7 23.2 225 209-472 47-289 (343)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.7E-30 3E-34 246.9 32.9 271 104-432 98-390 (450)
122 3f3f_A Nucleoporin SEH1; struc 100.0 5.4E-30 1.8E-34 239.1 30.4 258 100-438 49-342 (351)
123 3mmy_A MRNA export factor; mRN 100.0 6.7E-30 2.3E-34 240.6 29.9 254 102-432 80-345 (368)
124 2w18_A PALB2, fancn, partner a 100.0 3.5E-30 1.2E-34 231.0 25.7 230 109-431 112-355 (356)
125 1nir_A Nitrite reductase; hemo 100.0 2.2E-28 7.5E-33 240.9 33.0 317 115-472 144-511 (543)
126 1l0q_A Surface layer protein; 100.0 2.2E-27 7.6E-32 225.6 37.8 308 101-463 25-366 (391)
127 1k32_A Tricorn protease; prote 100.0 2.3E-27 7.9E-32 252.9 35.2 354 100-472 44-499 (1045)
128 2ecf_A Dipeptidyl peptidase IV 100.0 3.1E-27 1E-31 243.7 35.0 309 108-465 36-445 (741)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.1E-28 1.4E-32 232.0 25.4 299 109-457 63-410 (415)
130 3jro_A Fusion protein of prote 100.0 8.6E-28 2.9E-32 247.1 24.3 221 99-393 44-287 (753)
131 1nir_A Nitrite reductase; hemo 100.0 7.5E-26 2.6E-30 222.9 34.8 310 99-458 170-533 (543)
132 1xfd_A DIP, dipeptidyl aminope 100.0 1.8E-26 6.1E-31 237.3 26.4 311 110-463 18-428 (723)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-25 1.1E-29 212.0 25.7 278 152-472 64-384 (415)
134 1k32_A Tricorn protease; prote 99.9 1.7E-24 5.7E-29 230.9 33.1 317 100-472 237-634 (1045)
135 2ojh_A Uncharacterized protein 99.9 4.6E-25 1.6E-29 200.7 23.2 254 125-466 17-293 (297)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-24 5.4E-29 222.2 28.7 310 111-472 28-432 (706)
137 3vgz_A Uncharacterized protein 99.9 2.1E-23 7.1E-28 195.2 33.7 274 108-465 40-334 (353)
138 3u4y_A Uncharacterized protein 99.9 1.8E-23 6.2E-28 193.8 30.3 275 115-472 4-301 (331)
139 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-24 1.7E-28 219.7 26.6 303 150-472 36-410 (741)
140 3o4h_A Acylamino-acid-releasin 99.9 5.1E-24 1.7E-28 213.3 23.9 261 108-467 21-304 (582)
141 1ri6_A Putative isomerase YBHE 99.9 7E-23 2.4E-27 190.6 29.4 292 123-458 8-336 (343)
142 2z3z_A Dipeptidyl aminopeptida 99.9 5.5E-23 1.9E-27 210.7 31.3 281 109-435 82-437 (706)
143 1pby_B Quinohemoprotein amine 99.9 1.1E-22 3.7E-27 188.9 29.0 285 121-443 2-320 (337)
144 1z68_A Fibroblast activation p 99.9 1.4E-22 4.9E-27 208.0 24.8 311 113-471 20-439 (719)
145 2ojh_A Uncharacterized protein 99.9 5.7E-22 1.9E-26 180.2 23.6 234 103-424 36-293 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-22 3.7E-27 209.1 20.8 303 152-472 18-390 (723)
147 1ri6_A Putative isomerase YBHE 99.9 1.4E-21 4.8E-26 181.8 25.4 265 164-472 6-305 (343)
148 1jmx_B Amine dehydrogenase; ox 99.9 1.3E-21 4.6E-26 182.5 25.1 283 114-442 5-334 (349)
149 3hfq_A Uncharacterized protein 99.9 2.5E-20 8.5E-25 173.9 29.1 262 128-471 14-313 (347)
150 3u4y_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 172.8 28.8 244 105-436 37-307 (331)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 4.7E-21 1.6E-25 183.6 24.3 240 107-464 35-321 (434)
152 1pby_B Quinohemoprotein amine 99.9 1.4E-20 4.8E-25 174.6 23.3 261 163-472 2-307 (337)
153 3pe7_A Oligogalacturonate lyas 99.9 3.3E-20 1.1E-24 175.8 26.3 293 134-472 14-379 (388)
154 3o4h_A Acylamino-acid-releasin 99.9 4.3E-21 1.5E-25 192.1 20.4 231 150-472 21-273 (582)
155 3hfq_A Uncharacterized protein 99.9 1.1E-19 3.8E-24 169.5 27.1 254 107-437 38-323 (347)
156 3scy_A Hypothetical bacterial 99.9 1.7E-18 5.7E-23 162.5 35.3 265 107-453 48-360 (361)
157 4a5s_A Dipeptidyl peptidase 4 99.9 6.6E-19 2.3E-23 181.0 33.4 310 110-463 18-434 (740)
158 3scy_A Hypothetical bacterial 99.9 8.2E-19 2.8E-23 164.6 31.0 270 120-472 13-334 (361)
159 3vgz_A Uncharacterized protein 99.9 4.1E-19 1.4E-23 165.9 28.1 234 151-472 41-300 (353)
160 2oiz_A Aromatic amine dehydrog 99.8 8.8E-19 3E-23 163.9 28.2 296 119-457 14-360 (361)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 6.3E-20 2.2E-24 175.8 19.6 193 242-472 38-275 (434)
162 1z68_A Fibroblast activation p 99.8 1.6E-19 5.6E-24 185.3 23.0 282 110-436 61-446 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8.3E-23 161.5 28.0 268 123-472 5-338 (365)
164 1jmx_B Amine dehydrogenase; ox 99.8 4E-19 1.4E-23 165.6 22.5 268 156-472 5-322 (349)
165 3pe7_A Oligogalacturonate lyas 99.8 2.2E-18 7.6E-23 163.2 24.4 287 102-431 24-380 (388)
166 3azo_A Aminopeptidase; POP fam 99.8 6.1E-18 2.1E-22 172.0 26.7 288 102-436 17-372 (662)
167 3c5m_A Oligogalacturonate lyas 99.8 5.9E-18 2E-22 160.6 22.1 290 134-472 14-379 (396)
168 3fvz_A Peptidyl-glycine alpha- 99.8 8.5E-17 2.9E-21 148.6 28.2 248 150-472 23-319 (329)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-16 5E-21 147.1 29.3 244 108-433 23-322 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 8E-16 2.7E-20 139.1 33.0 241 105-433 26-280 (286)
171 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.7E-17 5.9E-22 155.7 22.5 251 108-434 39-342 (365)
172 3c5m_A Oligogalacturonate lyas 99.8 5.2E-17 1.8E-21 154.1 22.8 282 110-435 37-386 (396)
173 2gop_A Trilobed protease; beta 99.8 6.2E-16 2.1E-20 144.0 29.2 270 109-446 15-342 (347)
174 4a5s_A Dipeptidyl peptidase 4 99.7 5.7E-17 2E-21 166.6 21.5 292 152-463 18-381 (740)
175 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-15 1E-19 135.4 30.4 234 191-472 27-277 (286)
176 2dg1_A DRP35, lactonase; beta 99.7 4.3E-16 1.5E-20 144.2 24.7 265 110-465 7-300 (333)
177 2z2n_A Virginiamycin B lyase; 99.7 6.6E-14 2.3E-18 127.1 38.9 276 105-470 11-291 (299)
178 3azo_A Aminopeptidase; POP fam 99.7 5.8E-16 2E-20 157.4 24.7 282 146-471 19-363 (662)
179 2gop_A Trilobed protease; beta 99.7 4.7E-15 1.6E-19 138.0 25.9 253 151-472 15-328 (347)
180 3e5z_A Putative gluconolactona 99.7 5.7E-15 2E-19 134.2 25.4 252 105-470 24-282 (296)
181 2oiz_A Aromatic amine dehydrog 99.7 6.5E-15 2.2E-19 137.6 25.3 256 113-415 54-360 (361)
182 2xdw_A Prolyl endopeptidase; a 99.7 9.1E-15 3.1E-19 149.5 28.0 247 105-435 121-416 (710)
183 2bkl_A Prolyl endopeptidase; m 99.7 3.8E-15 1.3E-19 151.9 24.5 273 118-436 77-400 (695)
184 2xdw_A Prolyl endopeptidase; a 99.7 2.3E-14 7.7E-19 146.6 28.8 268 118-472 81-411 (710)
185 2dg1_A DRP35, lactonase; beta 99.7 3.3E-13 1.1E-17 124.7 32.7 241 104-423 40-300 (333)
186 1qks_A Cytochrome CD1 nitrite 99.7 8.7E-13 3E-17 129.6 37.0 315 118-472 165-535 (567)
187 3dsm_A Uncharacterized protein 99.7 1.4E-13 4.7E-18 126.9 28.5 254 128-472 15-299 (328)
188 2qc5_A Streptogramin B lactona 99.7 3.2E-12 1.1E-16 115.9 37.1 273 107-470 18-295 (300)
189 3no2_A Uncharacterized protein 99.6 2.5E-13 8.6E-18 121.5 26.5 233 119-441 4-260 (276)
190 1rwi_B Serine/threonine-protei 99.6 3E-13 1E-17 120.9 26.1 240 110-435 25-266 (270)
191 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-14 3.8E-19 148.5 18.6 245 105-394 117-400 (695)
192 1qks_A Cytochrome CD1 nitrite 99.6 6.7E-12 2.3E-16 123.3 37.5 293 109-442 197-547 (567)
193 3no2_A Uncharacterized protein 99.6 3E-13 1E-17 121.0 25.7 214 209-463 4-231 (276)
194 1rwi_B Serine/threonine-protei 99.6 1.2E-12 4.3E-17 116.9 27.1 235 195-472 25-261 (270)
195 3sjl_D Methylamine dehydrogena 99.6 2E-12 6.8E-17 119.3 28.7 300 114-455 38-384 (386)
196 2mad_H Methylamine dehydrogena 99.6 3.9E-11 1.3E-15 112.1 37.5 282 115-440 27-357 (373)
197 3dsm_A Uncharacterized protein 99.6 2.5E-12 8.7E-17 118.4 27.3 243 109-441 44-309 (328)
198 2z2n_A Virginiamycin B lyase; 99.5 4.9E-11 1.7E-15 108.0 33.3 238 148-472 12-252 (299)
199 1yr2_A Prolyl oligopeptidase; 99.5 7.6E-13 2.6E-17 135.9 23.7 273 118-436 116-444 (741)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.2E-11 7.5E-16 111.3 29.7 242 109-433 18-299 (314)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.4E-11 1.2E-15 110.0 27.3 232 196-472 20-296 (314)
202 1yiq_A Quinohemoprotein alcoho 99.5 5.5E-12 1.9E-16 127.5 22.8 312 120-461 70-534 (689)
203 3c75_H MADH, methylamine dehyd 99.4 6E-11 2E-15 111.5 26.9 282 118-440 82-409 (426)
204 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.9E-10 6.5E-15 108.0 30.7 308 119-472 52-375 (376)
205 1yr2_A Prolyl oligopeptidase; 99.4 1.1E-11 3.8E-16 127.3 23.2 269 160-472 116-438 (741)
206 2qc5_A Streptogramin B lactona 99.4 1.1E-09 3.8E-14 99.0 33.8 236 149-472 18-257 (300)
207 3hrp_A Uncharacterized protein 99.4 2.3E-10 8E-15 108.3 29.4 238 109-431 131-408 (409)
208 2qe8_A Uncharacterized protein 99.4 6.2E-12 2.1E-16 116.6 17.5 263 109-468 17-314 (343)
209 2mad_H Methylamine dehydrogena 99.4 9.8E-10 3.3E-14 102.6 32.3 265 158-472 28-347 (373)
210 3g4e_A Regucalcin; six bladed 99.4 4.4E-10 1.5E-14 101.8 28.5 228 111-422 15-261 (297)
211 3g4e_A Regucalcin; six bladed 99.4 1.1E-09 3.9E-14 99.1 30.3 233 196-463 15-260 (297)
212 1kb0_A Quinohemoprotein alcoho 99.4 5.2E-11 1.8E-15 120.1 23.5 313 120-462 77-537 (677)
213 3e5z_A Putative gluconolactona 99.4 4.8E-11 1.7E-15 108.1 20.5 193 238-472 25-243 (296)
214 1xip_A Nucleoporin NUP159; bet 99.4 1.4E-11 5E-16 114.0 16.6 169 110-297 39-229 (388)
215 1xip_A Nucleoporin NUP159; bet 99.4 1.7E-11 5.9E-16 113.5 17.0 181 152-419 39-230 (388)
216 3iuj_A Prolyl endopeptidase; h 99.4 7.3E-11 2.5E-15 120.0 22.2 244 105-436 125-408 (693)
217 3sjl_D Methylamine dehydrogena 99.3 5.5E-10 1.9E-14 103.0 23.7 268 156-472 38-360 (386)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 4.3E-09 1.5E-13 96.6 29.4 219 197-463 52-290 (326)
219 3hrp_A Uncharacterized protein 99.3 2.3E-09 7.9E-14 101.5 27.4 231 195-471 132-406 (409)
220 3hxj_A Pyrrolo-quinoline quino 99.3 1.9E-10 6.5E-15 105.8 18.8 296 114-471 25-320 (330)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 6.8E-09 2.3E-13 95.3 28.7 225 111-422 51-291 (326)
222 3iuj_A Prolyl endopeptidase; h 99.2 1.7E-09 5.7E-14 110.0 24.6 234 148-472 126-402 (693)
223 1mda_H Methylamine dehydrogena 99.2 1.1E-09 3.8E-14 101.2 21.0 267 131-453 47-365 (368)
224 3dr2_A Exported gluconolactona 99.2 4.5E-09 1.5E-13 95.5 24.8 228 107-424 43-298 (305)
225 2hz6_A Endoplasmic reticulum t 99.2 2.5E-11 8.4E-16 113.5 10.0 147 119-277 8-156 (369)
226 3dr2_A Exported gluconolactona 99.2 2.7E-09 9.1E-14 97.0 23.1 250 145-470 39-302 (305)
227 3c75_H MADH, methylamine dehyd 99.2 2.4E-09 8.1E-14 100.6 21.6 264 160-472 82-399 (426)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.8E-09 2.7E-13 97.0 24.4 262 119-430 102-375 (376)
229 1kb0_A Quinohemoprotein alcoho 99.1 5.4E-09 1.9E-13 105.4 22.7 295 162-472 77-504 (677)
230 2hz6_A Endoplasmic reticulum t 99.1 1.1E-10 3.8E-15 109.1 8.8 204 209-457 8-216 (369)
231 1kv9_A Type II quinohemoprotei 99.1 1.7E-08 5.8E-13 101.7 23.2 314 120-463 66-520 (668)
232 4a2l_A BT_4663, two-component 99.1 2.7E-06 9.1E-11 88.0 40.2 307 111-466 175-518 (795)
233 4a2l_A BT_4663, two-component 99.1 1.2E-06 4.1E-11 90.6 36.8 307 111-466 133-472 (795)
234 1yiq_A Quinohemoprotein alcoho 99.1 3.8E-08 1.3E-12 99.5 24.4 300 162-473 70-503 (689)
235 3hxj_A Pyrrolo-quinoline quino 98.9 2.9E-08 1E-12 91.0 16.4 265 109-433 60-324 (330)
236 2qe8_A Uncharacterized protein 98.9 7.7E-08 2.6E-12 88.9 18.4 199 195-472 18-275 (343)
237 1mda_H Methylamine dehydrogena 98.9 1.3E-07 4.6E-12 87.3 19.3 244 113-411 69-365 (368)
238 3v9f_A Two-component system se 98.9 4.6E-05 1.6E-09 78.6 39.6 313 109-471 211-564 (781)
239 1w6s_A Methanol dehydrogenase 98.8 1.6E-06 5.5E-11 85.6 25.1 313 120-460 62-531 (599)
240 2ece_A 462AA long hypothetical 98.8 4.3E-06 1.5E-10 77.8 26.2 239 118-421 93-399 (462)
241 2ad6_A Methanol dehydrogenase 98.8 8.8E-07 3E-11 87.4 23.0 311 120-461 62-523 (571)
242 3v9f_A Two-component system se 98.8 5.7E-05 1.9E-09 77.9 37.6 310 109-467 163-517 (781)
243 1flg_A Protein (quinoprotein e 98.8 2.9E-06 9.8E-11 83.8 25.5 80 381-461 465-545 (582)
244 2ece_A 462AA long hypothetical 98.8 2.3E-06 7.8E-11 79.6 22.8 235 211-463 97-399 (462)
245 2iwa_A Glutamine cyclotransfer 98.8 2.7E-06 9.3E-11 74.2 22.0 187 243-470 23-232 (266)
246 1kv9_A Type II quinohemoprotei 98.7 1.3E-06 4.6E-11 87.9 22.3 281 162-472 66-485 (668)
247 1npe_A Nidogen, entactin; glyc 98.7 5.8E-05 2E-09 66.6 29.1 250 163-457 2-263 (267)
248 3nol_A Glutamine cyclotransfer 98.6 6.6E-06 2.2E-10 70.9 20.4 179 243-464 45-244 (262)
249 1k3i_A Galactose oxidase precu 98.6 4.1E-06 1.4E-10 84.5 22.1 115 113-233 190-327 (656)
250 3nok_A Glutaminyl cyclase; bet 98.6 1E-05 3.5E-10 69.7 20.3 179 243-464 57-254 (268)
251 2iwa_A Glutamine cyclotransfer 98.6 8.1E-05 2.8E-09 64.9 25.8 201 152-434 22-238 (266)
252 2ad6_A Methanol dehydrogenase 98.6 1.7E-05 5.8E-10 78.2 23.8 114 162-279 62-194 (571)
253 2p4o_A Hypothetical protein; p 98.5 0.0002 6.8E-09 64.6 29.1 115 109-230 32-148 (306)
254 2fp8_A Strictosidine synthase; 98.5 5.9E-05 2E-09 68.7 25.4 108 362-472 186-310 (322)
255 1npe_A Nidogen, entactin; glyc 98.5 0.0002 6.7E-09 63.2 27.8 249 122-415 3-263 (267)
256 3mbr_X Glutamine cyclotransfer 98.5 6.4E-05 2.2E-09 64.2 22.7 181 242-464 22-223 (243)
257 1w6s_A Methanol dehydrogenase 98.4 5.7E-05 2E-09 74.5 24.2 116 162-279 62-200 (599)
258 1fwx_A Nitrous oxide reductase 98.4 6.4E-06 2.2E-10 79.4 16.6 242 118-435 99-433 (595)
259 3nol_A Glutamine cyclotransfer 98.4 0.00015 5E-09 62.6 23.1 185 153-422 45-244 (262)
260 1fwx_A Nitrous oxide reductase 98.4 1.2E-05 4E-10 77.6 16.9 238 212-464 104-407 (595)
261 3nok_A Glutaminyl cyclase; bet 98.3 0.00022 7.7E-09 61.4 22.3 185 152-421 56-253 (268)
262 2fp8_A Strictosidine synthase; 98.3 0.00044 1.5E-08 62.8 26.0 73 111-183 21-112 (322)
263 1flg_A Protein (quinoprotein e 98.3 0.00026 8.8E-09 69.9 24.4 116 162-278 68-201 (582)
264 3mbr_X Glutamine cyclotransfer 98.3 0.0015 5.1E-08 55.8 25.4 188 151-422 21-223 (243)
265 2p4o_A Hypothetical protein; p 98.2 0.0023 7.9E-08 57.5 27.1 222 196-464 34-277 (306)
266 2xe4_A Oligopeptidase B; hydro 98.2 0.0004 1.4E-08 71.0 24.2 158 105-270 169-354 (751)
267 3s94_A LRP-6, low-density lipo 98.0 0.016 5.6E-07 57.4 35.9 347 109-463 84-453 (619)
268 3v64_C Agrin; beta propeller, 98.0 0.01 3.5E-07 54.4 30.7 243 109-439 34-281 (349)
269 2xbg_A YCF48-like protein; pho 98.0 0.0098 3.4E-07 54.0 34.1 110 359-472 203-319 (327)
270 3v65_B Low-density lipoprotein 97.9 0.013 4.4E-07 54.6 28.5 218 216-471 92-314 (386)
271 3v64_C Agrin; beta propeller, 97.9 0.014 4.7E-07 53.5 29.2 215 218-470 51-270 (349)
272 3tc9_A Hypothetical hydrolase; 97.8 0.02 6.8E-07 54.1 27.1 153 110-269 138-300 (430)
273 3v65_B Low-density lipoprotein 97.8 0.023 8E-07 52.8 28.0 241 155-440 81-325 (386)
274 3sov_A LRP-6, low-density lipo 97.8 0.021 7.2E-07 51.4 25.8 75 362-437 167-242 (318)
275 3amr_A 3-phytase; beta-propell 97.8 0.0097 3.3E-07 53.6 22.0 187 253-472 42-260 (355)
276 3qqz_A Putative uncharacterize 97.7 0.017 5.9E-07 49.8 24.9 198 236-472 22-250 (255)
277 2xe4_A Oligopeptidase B; hydro 97.7 0.0035 1.2E-07 64.1 21.6 130 340-471 248-394 (751)
278 2xbg_A YCF48-like protein; pho 97.6 0.038 1.3E-06 50.0 34.6 271 108-431 35-320 (327)
279 1k3i_A Galactose oxidase precu 97.6 0.0052 1.8E-07 61.8 19.6 70 113-183 247-325 (656)
280 4hw6_A Hypothetical protein, I 97.6 0.059 2E-06 50.9 28.0 153 110-269 140-303 (433)
281 4hw6_A Hypothetical protein, I 97.5 0.05 1.7E-06 51.4 25.1 138 332-471 243-429 (433)
282 1ijq_A LDL receptor, low-densi 97.5 0.05 1.7E-06 48.9 30.6 215 218-471 8-234 (316)
283 3qqz_A Putative uncharacterize 97.4 0.05 1.7E-06 46.9 23.4 116 146-268 22-149 (255)
284 3sov_A LRP-6, low-density lipo 97.3 0.088 3E-06 47.3 26.0 137 332-470 94-233 (318)
285 3tc9_A Hypothetical hydrolase; 97.3 0.081 2.8E-06 49.9 23.3 139 332-471 241-426 (430)
286 1ijq_A LDL receptor, low-densi 97.3 0.093 3.2E-06 47.1 31.6 228 129-399 9-246 (316)
287 1n7d_A LDL receptor, low-densi 97.2 0.006 2.1E-07 61.6 15.6 79 362-441 541-622 (699)
288 3amr_A 3-phytase; beta-propell 97.2 0.13 4.3E-06 46.4 23.0 79 362-440 181-271 (355)
289 2p9w_A MAL S 1 allergenic prot 97.2 0.12 4.2E-06 46.0 21.9 70 363-433 139-215 (334)
290 3p5b_L Low density lipoprotein 97.1 0.19 6.5E-06 46.8 31.1 221 213-471 85-316 (400)
291 3ei3_A DNA damage-binding prot 97.1 0.44 1.5E-05 50.8 33.1 72 108-179 553-634 (1158)
292 4a0p_A LRP6, LRP-6, low-densit 97.1 0.29 1E-05 48.5 40.7 343 110-460 81-447 (628)
293 3m0c_C LDL receptor, low-densi 96.9 0.44 1.5E-05 48.5 27.3 216 215-469 399-626 (791)
294 2ism_A Putative oxidoreductase 96.9 0.24 8.1E-06 45.2 26.4 59 404-463 269-333 (352)
295 3p5b_L Low density lipoprotein 96.9 0.28 9.6E-06 45.7 33.6 246 122-410 85-339 (400)
296 3pbp_A Nucleoporin NUP82; beta 96.9 0.082 2.8E-06 48.7 17.8 107 362-469 67-206 (452)
297 2p9w_A MAL S 1 allergenic prot 96.9 0.066 2.3E-06 47.8 16.8 140 332-471 28-211 (334)
298 3m0c_C LDL receptor, low-densi 96.7 0.62 2.1E-05 47.5 30.5 158 128-290 402-566 (791)
299 3kya_A Putative phosphatase; s 96.6 0.5 1.7E-05 45.0 27.2 153 110-268 140-339 (496)
300 1n7d_A LDL receptor, low-densi 96.6 0.012 4.1E-07 59.4 11.6 137 333-471 469-610 (699)
301 3pbp_A Nucleoporin NUP82; beta 96.6 0.31 1.1E-05 45.0 19.3 143 117-264 29-206 (452)
302 3sre_A PON1, serum paraoxonase 96.4 0.55 1.9E-05 42.6 20.2 101 361-465 165-287 (355)
303 3s94_A LRP-6, low-density lipo 96.2 1.1 3.9E-05 44.2 37.6 102 332-434 407-511 (619)
304 3kya_A Putative phosphatase; s 95.8 1.3 4.5E-05 42.1 24.6 236 195-471 140-471 (496)
305 2be1_A Serine/threonine-protei 95.8 0.23 7.8E-06 44.8 14.0 115 163-279 11-139 (339)
306 1tl2_A L10, protein (tachylect 95.7 0.087 3E-06 43.8 10.0 101 361-468 41-156 (236)
307 2xzh_A Clathrin heavy chain 1; 95.6 1.1 3.8E-05 39.8 26.7 246 114-435 72-334 (365)
308 3ei3_A DNA damage-binding prot 95.6 2.9 0.0001 44.6 40.7 111 110-227 515-634 (1158)
309 2ism_A Putative oxidoreductase 95.5 0.23 8E-06 45.3 13.6 99 362-463 32-153 (352)
310 2vpj_A Kelch-like protein 12; 95.4 1.3 4.4E-05 39.1 19.2 92 371-466 159-264 (301)
311 3sre_A PON1, serum paraoxonase 95.4 0.51 1.7E-05 42.9 15.1 132 337-471 81-248 (355)
312 2vpj_A Kelch-like protein 12; 95.3 1.4 4.6E-05 38.9 20.0 63 371-435 206-280 (301)
313 1tl2_A L10, protein (tachylect 95.2 0.72 2.5E-05 38.4 13.7 86 337-426 105-203 (236)
314 3das_A Putative oxidoreductase 94.7 0.54 1.8E-05 42.5 13.1 102 361-464 32-159 (347)
315 3ott_A Two-component system se 94.7 4.3 0.00015 41.3 32.0 258 150-459 21-293 (758)
316 3a9g_A Putative uncharacterize 94.7 0.26 8.9E-06 45.0 11.2 101 362-464 30-154 (354)
317 2xn4_A Kelch-like protein 2; s 94.5 2.3 8E-05 37.4 21.5 63 371-435 204-278 (302)
318 1cru_A Protein (soluble quinop 94.2 0.86 3E-05 43.1 13.9 103 362-464 28-163 (454)
319 2be1_A Serine/threonine-protei 94.2 1.3 4.4E-05 39.9 14.2 149 121-271 11-184 (339)
320 1bpo_A Protein (clathrin); cla 94.1 3.7 0.00013 38.1 27.5 243 114-434 71-332 (494)
321 2xn4_A Kelch-like protein 2; s 94.0 3 0.0001 36.7 18.3 92 371-466 155-262 (302)
322 3a9g_A Putative uncharacterize 93.8 3.7 0.00013 37.2 26.6 61 361-421 259-330 (354)
323 3ii7_A Kelch-like protein 7; p 93.8 3.2 0.00011 36.5 18.7 92 371-466 149-258 (306)
324 3ii7_A Kelch-like protein 7; p 93.4 3.8 0.00013 36.1 21.5 103 122-233 14-131 (306)
325 4asc_A Kelch repeat and BTB do 93.4 3.9 0.00013 36.2 19.4 92 370-465 147-253 (315)
326 4a0p_A LRP6, LRP-6, low-densit 93.4 6.7 0.00023 38.8 43.9 121 333-454 405-529 (628)
327 1cru_A Protein (soluble quinop 92.4 7.4 0.00025 36.7 19.9 30 242-271 28-58 (454)
328 1zgk_A Kelch-like ECH-associat 92.4 5.5 0.00019 35.1 17.4 92 371-466 168-273 (308)
329 2g8s_A Glucose/sorbosone dehyd 92.3 0.56 1.9E-05 42.8 9.1 99 362-464 19-149 (353)
330 2g8s_A Glucose/sorbosone dehyd 92.2 6.5 0.00022 35.6 26.3 60 361-420 271-340 (353)
331 4asc_A Kelch repeat and BTB do 90.8 8.2 0.00028 34.0 23.0 55 130-184 13-79 (315)
332 2woz_A Kelch repeat and BTB do 90.7 8.4 0.00029 34.0 18.7 93 370-466 157-264 (318)
333 3das_A Putative oxidoreductase 90.7 9.2 0.00032 34.4 30.7 53 109-161 32-90 (347)
334 3ott_A Two-component system se 89.9 18 0.00062 36.6 37.3 306 110-466 192-537 (758)
335 3sbq_A Nitrous-oxide reductase 88.4 2 6.7E-05 41.2 8.9 100 362-463 324-453 (638)
336 2wg3_C Hedgehog-interacting pr 88.1 7.2 0.00025 36.8 12.9 105 362-466 15-160 (463)
337 1zgk_A Kelch-like ECH-associat 88.1 13 0.00045 32.6 19.6 63 371-435 215-289 (308)
338 1xi4_A Clathrin heavy chain; a 87.9 34 0.0012 37.2 20.8 257 128-432 46-330 (1630)
339 2uvk_A YJHT; unknown function, 87.7 15 0.00052 32.9 19.4 54 383-438 286-347 (357)
340 2xzh_A Clathrin heavy chain 1; 86.9 16 0.00056 32.5 30.0 221 213-468 80-325 (365)
341 2zwa_A Leucine carboxyl methyl 86.5 28 0.00097 34.8 17.3 71 365-436 543-638 (695)
342 1xi4_A Clathrin heavy chain; a 84.9 49 0.0017 36.1 21.0 220 213-467 79-323 (1630)
343 4fhn_B Nucleoporin NUP120; pro 84.1 34 0.0012 36.6 17.1 37 362-398 239-275 (1139)
344 4gq2_M Nucleoporin NUP120; bet 83.1 48 0.0016 34.6 22.9 37 362-398 237-273 (950)
345 1bpo_A Protein (clathrin); cla 82.9 30 0.001 32.2 31.8 221 213-468 79-324 (494)
346 3qhy_B Beta-lactamase inhibito 78.6 32 0.0011 29.8 20.7 89 338-433 119-207 (282)
347 2woz_A Kelch repeat and BTB do 76.6 23 0.0008 31.1 11.1 127 332-464 19-167 (318)
348 2wg3_C Hedgehog-interacting pr 75.3 55 0.0019 30.8 15.0 52 110-161 15-79 (463)
349 2uvk_A YJHT; unknown function, 71.1 24 0.00083 31.5 10.0 51 371-423 65-128 (357)
350 3zwu_A Alkaline phosphatase PH 69.1 20 0.00068 34.9 9.0 58 363-420 478-548 (592)
351 3zwu_A Alkaline phosphatase PH 68.3 12 0.00042 36.4 7.4 59 404-462 477-548 (592)
352 3sbq_A Nitrous-oxide reductase 68.1 14 0.00048 35.5 7.5 88 383-472 299-405 (638)
353 2zwa_A Leucine carboxyl methyl 67.4 64 0.0022 32.2 12.8 93 371-464 451-559 (695)
354 4a9v_A PHOX; hydrolase, beta-p 64.3 29 0.00099 33.5 8.9 61 361-421 476-549 (592)
355 4a9v_A PHOX; hydrolase, beta-p 62.7 26 0.00089 33.8 8.3 60 403-462 476-548 (592)
356 3s25_A Hypothetical 7-bladed b 58.0 95 0.0033 27.1 21.2 88 366-462 150-240 (302)
357 4gq2_M Nucleoporin NUP120; bet 55.2 16 0.00056 38.1 6.1 35 404-438 237-271 (950)
358 3f7f_A Nucleoporin NUP120; nuc 50.2 26 0.00089 34.9 6.2 37 241-278 222-258 (729)
359 3f7f_A Nucleoporin NUP120; nuc 47.2 34 0.0011 34.1 6.4 36 362-399 223-258 (729)
360 3uc1_A DNA gyrase subunit A; D 45.2 1.6E+02 0.0056 26.0 14.6 98 371-470 108-223 (327)
361 4fhn_B Nucleoporin NUP120; pro 39.7 17 0.0006 38.8 3.5 35 404-438 239-273 (1139)
362 3qhy_B Beta-lactamase inhibito 27.9 2.8E+02 0.0097 23.6 21.9 106 338-454 158-263 (282)
363 3s25_A Hypothetical 7-bladed b 22.6 3.7E+02 0.013 23.2 25.0 62 117-183 22-99 (302)
364 2jx5_A GLUB(S27A); ubiquitin, 22.5 75 0.0026 19.1 2.6 21 25-45 12-32 (69)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-51 Score=415.60 Aligned_cols=390 Identities=20% Similarity=0.344 Sum_probs=307.0
Q ss_pred cccEEEEEEEece--------------eEEEeecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCce
Q 011978 78 VEKVLSIVYQPQA--------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP 142 (473)
Q Consensus 78 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~ 142 (473)
...+..+.+.|.. ...++....+...+.||.+.|++++|+|++. .|++|+.|++|++||..+++.
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~ 182 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 182 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE
Confidence 3456667776643 2233444556677899999999999999987 599999999999999998888
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCC------CcCCcEEEEEeceeccCCCCceEEEe
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSA 216 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~~s~ 216 (473)
...+.+|...|.+++|+|||++|++|+.|++|++||..+++....... +|...|.++.|+| ++.+++++
T Consensus 183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s~ 257 (611)
T 1nr0_A 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIASA 257 (611)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEEE
T ss_pred eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEEE
Confidence 888999999999999999999999999999999999988876543222 7999999999987 56789999
Q ss_pred eCCCcEEEEECCCCeEEE-------------------------------------------EecCccccEEEEEecCCC-
Q 011978 217 SKDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG- 252 (473)
Q Consensus 217 s~dg~i~iwd~~~~~~~~-------------------------------------------~~~~h~~~v~~~~~~~~~- 252 (473)
+.|++|++||+.+++++. .+.+|...|++++|++++
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence 999999999998776543 345899999999999988
Q ss_pred eEEEeecCCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHH------------------
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM------------------ 313 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 313 (473)
.|++++.|++|++||+.+++....+ .+|...|.+++++++..+..+..+...+.+......
T Consensus 338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 5899999999999999998877665 568888999988776655554443321111100000
Q ss_pred ----H----------------HHHHh------hhhcc-cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEE
Q 011978 314 ----K----------------KAALE------RYNKI-KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (473)
Q Consensus 314 ----~----------------~~~~~------~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 366 (473)
. ...+. ....+ .......+++++.|+++++||............+|...|+++
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v 497 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 497 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEE
Confidence 0 00000 00000 112345799999999999999764322112236789999999
Q ss_pred EECCCCcEEEEEECCCcEEEEeCCC-CceEEE--eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ee-eccc
Q 011978 367 YFSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK-LK-QDLP 441 (473)
Q Consensus 367 ~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~-~~-~~~~ 441 (473)
+|+|||++||+++.|++|++||..+ ++++.. +.+|.+.|++++|+|||++||+||.|++|++||+..+. .. ..+.
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~ 577 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence 9999999999999999999999987 555443 34599999999999999999999999999999998754 33 5677
Q ss_pred cc-CCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 442 GH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 442 ~h-~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
+| ...|++++|+||++ |++++.|++|++|+.
T Consensus 578 ~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 578 AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred cCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 89 89999999999998 999999999999973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-49 Score=399.55 Aligned_cols=367 Identities=20% Similarity=0.285 Sum_probs=278.7
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEE-------------------------------
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFK------------------------------- 145 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~------------------------------- 145 (473)
.....+.||.+.|++++|+|+|++||+|+.|++|+|||+.++.. ...
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 45567889999999999999999999999999999999864321 111
Q ss_pred -------------EcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCc
Q 011978 146 -------------CTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211 (473)
Q Consensus 146 -------------~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~ 211 (473)
+.+|...|.+++|+|++. .|++|+.|++|++||..+++.. ..+.+|...|.+++|+| ++.
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~fsp-----dg~ 203 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNP-----DGS 203 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEEECT-----TSS
T ss_pred EEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-eeeccccCceEEEEECC-----CCC
Confidence 234666677777777765 4888888899999998776543 34678999999999987 567
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEec-------CccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeee------
Q 011978 212 RFVSASKDGDARIWDVSLRKCVICLS-------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL------ 277 (473)
Q Consensus 212 ~~~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~------ 277 (473)
++++++.|++|++||+.+++++..+. +|...|.+++|++++ .|++++.|++|++||+.+++.+..+
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence 89999999999999999999888874 799999999999988 5899999999999999887655433
Q ss_pred -------------------------------------eccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHH---
Q 011978 278 -------------------------------------KGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA--- 316 (473)
Q Consensus 278 -------------------------------------~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 316 (473)
.+|...|.+++++|+.. +..+..|...+.+.........
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~ 363 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 363 (611)
T ss_dssp GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence 45777788888887653 3444444443333211000000
Q ss_pred --HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe---------------------------------------ee
Q 011978 317 --ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK---------------------------------------TR 355 (473)
Q Consensus 317 --~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------------------~~ 355 (473)
.......+.......+++++.|+++++|+........ ..
T Consensus 364 ~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~ 443 (611)
T 1nr0_A 364 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 443 (611)
T ss_dssp CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee
Confidence 0000001111123467888888999999864321100 00
Q ss_pred ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
...|...+.+++|+|||++||+|+.|++|++||+.++.. +.. .+|.+.|++++|||||++|++++.|++|++||+.+
T Consensus 444 ~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 444 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 011345678999999999999999999999999987654 234 67999999999999999999999999999999987
Q ss_pred -Cceeec--ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 434 -QKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 434 -~~~~~~--~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++.... +.+|...|++++|+|||++||+++.|++|++|+
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 555443 345999999999999999999999999999996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-50 Score=384.24 Aligned_cols=308 Identities=28% Similarity=0.439 Sum_probs=272.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
....+.||.++|++++|+|++.+|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 34567899999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 258 (473)
.+++... .+.+|...|.++.|.| ++..+++|+.|++|++||+.++.++..+.+|...|.++.+++++ .+++|+
T Consensus 180 ~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 180 QGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp TSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 8876543 5688999999999987 45689999999999999999999999999999999999999987 588999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|++|++||+.+++....+..|...|.+++++++......... .
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--------------------------------~---- 297 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA--------------------------------T---- 297 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC--------------------------------C----
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh--------------------------------c----
Confidence 9999999999999999999999999999988775321100000 0
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
........++|.+|++|+.|++|++||+++++++..+.+|.+.|.+++|+|+|++|+
T Consensus 298 -----------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 354 (410)
T 1vyh_C 298 -----------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 354 (410)
T ss_dssp -----------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE
T ss_pred -----------------------cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE
Confidence 000011234688999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|+.||+|++||+.+++....+.+|...|++++|+|++++|++|+.|++|++|.
T Consensus 355 s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 355 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 999999999999999998899999999999999999999999999999999996
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.2e-49 Score=367.59 Aligned_cols=288 Identities=25% Similarity=0.450 Sum_probs=259.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
...++.||.+.|.+++|+|++++|++|+.||+|++||+.++..+..+..|...|.+++|+|+|++|++|+.|+.+++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567899999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CCCcc---ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE
Q 011978 180 QTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 180 ~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~ 255 (473)
.++.. ....+.+|...|.++.|.+. ..+++++.|++|++||+.+++++..+.+|...|.+++|++++ .++
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDD------NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCC------CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 87542 22346789999999998762 369999999999999999999999999999999999999987 588
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+|+.|++|++||+++++....+
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~---------------------------------------------------------- 222 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTF---------------------------------------------------------- 222 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEE----------------------------------------------------------
T ss_pred EEeCCCcEEEEECCCCeeEEEE----------------------------------------------------------
Confidence 9999999999999876544322
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--CccCEEEEEEecC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQISWSAD 413 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~ 413 (473)
.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.. +...|.+++|+|+
T Consensus 223 ---------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 223 ---------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp ---------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred ---------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 24556789999999999999999999999999999988777653 3457999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 414 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 414 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|++|++|+.||.|++||+.+++....+.+|...|.+++|+|||++|+||+.|++|+||+
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999988889999999999999999999999999999999995
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=362.04 Aligned_cols=286 Identities=24% Similarity=0.432 Sum_probs=256.4
Q ss_pred ccccCCcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 102 ATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
..+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.++.. ...+.+|...|.+++|++++..+++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456789999999999985 56899999999999999987653 346789999999999999999999999999999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eE
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l 254 (473)
+||+.+++... .+..|...+..+.|+| ++.++++++.|+.+++||+.+++....+..|...|.+++|++++ .|
T Consensus 106 lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 106 LWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 99999887654 3456777788888876 56799999999999999999999999999999999999999988 58
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++|+.|+.|++||+++++.+..+.
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~-------------------------------------------------------- 203 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLE-------------------------------------------------------- 203 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEEc--------------------------------------------------------
Confidence 899999999999998876544332
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 204 -----------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 204 -----------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp -----------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred -----------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 345568899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++|++++.|++|++||+.+++.+.++.+|.+.|++++|+|++++|++++.|++|++|+
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999996
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.9e-48 Score=385.71 Aligned_cols=325 Identities=37% Similarity=0.644 Sum_probs=291.3
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
.++...+.+|...|.+++|+|+++.|++++.|+.|++||.. ++....+.+|...|.+++|+|+++.|++++.|+.|++|
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34556778999999999999999999999999999999975 45566788999999999999999999999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s 256 (473)
|...... ..+.+|...+.++.|+| ++..+++++.|+.+++||. +++.+..+.+|...|.+++|++++ .|++
T Consensus 331 ~~~~~~~--~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 331 NRNGQHL--QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp ETTSCEE--EEECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred eCCCCee--EEEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 9875543 24678899999999877 5678999999999999995 567788889999999999999988 5889
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
++.|+.|++||. +++.+..+.+|...|.+++++|+ ...+++++
T Consensus 403 ~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------~~~l~~~~ 445 (577)
T 2ymu_A 403 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------------------DQTIASAS 445 (577)
T ss_dssp EETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSEEEEEE
T ss_pred EeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEc
Confidence 999999999995 67888889999999999998875 23689999
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL 416 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 416 (473)
.|+++++||.. ......+.+|...|++++|+|++++||+++.|+.|++||. +++++..+.+|.+.|++++|+|||++
T Consensus 446 ~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 446 DDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp TTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred CCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence 99999999963 3445677889999999999999999999999999999995 68889999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 417 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
||+++.||.|++||. +++.+..+.+|.+.|++++|+|||++|+|++.|++|++|+
T Consensus 523 l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999996 5677888999999999999999999999999999999996
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6e-48 Score=362.13 Aligned_cols=289 Identities=26% Similarity=0.458 Sum_probs=257.1
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
...++.||.+.|++++|+|++++||+|+.|++|+|||..++.....+..|...|.+++|+|+|..|++|+.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34567899999999999999999999999999999999998888888889999999999999999999999999999998
Q ss_pred CCCcc-----ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC---
Q 011978 180 QTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--- 251 (473)
Q Consensus 180 ~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--- 251 (473)
..... ....+.+|...|.++.|.| +...+++++.|++|++||+.+++++..+.+|...|.++.|.++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred eccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence 65421 2233567999999999987 4568999999999999999999999999999999999999763
Q ss_pred CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
..+++|+.|++|++||+++++.+..+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~------------------------------------------------------ 236 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAF------------------------------------------------------ 236 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEE------------------------------------------------------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe------------------------------------------------------
Confidence 37999999999999999877654332
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEE
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIS 409 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~ 409 (473)
.+|...|++++|+|++.+|++|+.|++|++||+++++.+..+..+ ...+.+++
T Consensus 237 -------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 237 -------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred -------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 245567899999999999999999999999999998887777643 35799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|+|++|++|+.|++|++||+.+++....+.+|...|++++|+|||++|++|+.|++|++|.
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999988889999999999999999999999999999999995
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-47 Score=352.93 Aligned_cols=286 Identities=26% Similarity=0.390 Sum_probs=252.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
..++.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34678899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecC-CC-eEEEe
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTG 257 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~s~ 257 (473)
+++... .+.+|...|.++.|+| ++.++++|+.|++|++||++++ .....+.+|...|.+++|+| ++ .+++|
T Consensus 86 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 86 TGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp TCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred CCcEEE-EEeCCCCcEEEEEEcC-----CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 887654 4678999999999987 4568999999999999999887 55667889999999999998 44 68999
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|++|++||++++.....+
T Consensus 160 s~D~~v~iwd~~~~~~~~~~------------------------------------------------------------ 179 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTL------------------------------------------------------------ 179 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEE------------------------------------------------------------
T ss_pred eCCCeEEEEECCCCCcccee------------------------------------------------------------
Confidence 99999999998765432211
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
..+|...+..++|+| ++++|++|+.|++|++||+++++++..+.+|...|.+++|+|+++
T Consensus 180 ------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 180 ------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp ------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred ------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence 112334567778876 788999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC--EEEEEeCCCcEEe
Q 011978 416 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRVLKL 470 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~--~l~s~~~D~~i~~ 470 (473)
+|++|+.||+|++||+.+++....+..|...+++++|+|++. ++++|+.|+.+.+
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 999999999999999999999999999999999999999885 5788887775543
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-48 Score=368.87 Aligned_cols=291 Identities=25% Similarity=0.485 Sum_probs=252.8
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
+..++.||.+.|++++|+|++++|++|+.|++|+|||+.++.....+..|...|.+++|+|+|++|++|+.|+.+++||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 45678899999999999999999999999999999999999988889999999999999999999999999999999998
Q ss_pred CCCc------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-----cCccccEEEEEe
Q 011978 180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW 248 (473)
Q Consensus 180 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~ 248 (473)
.+.. .....+.+|...+.++.|.|. ...++++|+.|++|++||+.+++++..+ .+|...|.++.|
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 6532 123356789999998888763 2357999999999999999999988776 678899999999
Q ss_pred cC-CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978 249 GG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (473)
Q Consensus 249 ~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
++ ++ .+++|+.|++|++||++...
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~------------------------------------------------------ 239 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITS------------------------------------------------------ 239 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTC------------------------------------------------------
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCC------------------------------------------------------
Confidence 75 43 68889999999999976321
Q ss_pred CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc----
Q 011978 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV---- 402 (473)
Q Consensus 327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~---- 402 (473)
.....+.+|...|++++|+|++++|++|+.|++|++||+++++.+..+..+.
T Consensus 240 ------------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 240 ------------------------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp ------------------------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred ------------------------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 1112344677789999999999999999999999999999999888876543
Q ss_pred ---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc----cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 403 ---GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 403 ---~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..|++++|+|+|++|++|+.||.|++||+..++....+ .+|...|++++|+|||++|+||+.|++|++|.
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 34899999999999999999999999999888776555 68999999999999999999999999999996
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6e-47 Score=352.86 Aligned_cols=283 Identities=20% Similarity=0.249 Sum_probs=236.2
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-----------CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
..|...|.+++|+|||++|++++ |+++|+||... .........|...|.+++|+||+ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35777899999999999999887 67788886321 01111222456789999999985 7889999999
Q ss_pred EEEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978 174 LQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 174 i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
|++||+.+++... ....+|...|.+++|+| ++.++++|+.|++|++||+.+++++..+.+|...|.+++|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 9999999887543 23458999999999987 567999999999999999999999999999999999999998
Q ss_pred CC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 251 ~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
++ .+++++.|++|++||+++++....+..
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------------------- 210 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------------------------------------- 210 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------------
T ss_pred CCCCceeeeccccccccccccccceeeeeec-------------------------------------------------
Confidence 76 578999999999999988776543321
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~ 407 (473)
..|...+.+++|+| ++++|++|+.|++|++||+++++++..+.+|.+.|++
T Consensus 211 ----------------------------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~ 262 (344)
T 4gqb_B 211 ----------------------------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262 (344)
T ss_dssp -------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred ----------------------------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence 01223577899998 5678999999999999999999999999999999999
Q ss_pred EEEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcEEecc
Q 011978 408 ISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVLKLWM 472 (473)
Q Consensus 408 v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~~w~ 472 (473)
++|+|++ ++||+||.|++|+|||+.+++.. .+.+|.+.|++++|+|+++ .|+|+|.|++|++|.
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 9999998 58999999999999999988765 4678999999999999987 567999999999996
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-46 Score=353.59 Aligned_cols=284 Identities=21% Similarity=0.286 Sum_probs=238.1
Q ss_pred cCCcccEEEEEECCCCCeEEEEeC------CCeEEEEeCCCCce----eEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTP----MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~------d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
.+|...|++++|+|||++||+|+. |+.|++|+..++.+ .....+|...|.+++|+|+++ +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 78899999876543 233457889999999999975 6678889999
Q ss_pred EEeeCCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC
Q 011978 175 QCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 175 ~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (473)
++||+.+++... ....+|...|.++.|+| ++.++++++.|++|++||+.+++++..+.+|...|.+++|+++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 999998876432 22457999999999987 5678999999999999999999999999999999999999876
Q ss_pred C--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 252 G--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 252 ~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
+ .+++++.|++|++||+++++....+.
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------------------------------------- 221 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRID--------------------------------------------------- 221 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------------------------------------
T ss_pred CCceeeeeccCCceEEEECCCCceeeeee---------------------------------------------------
Confidence 5 68899999999999998765433211
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v 408 (473)
...|...+.+++|+|+ +.+||+|+.|+.|++||+++++++..+.+|...|+++
T Consensus 222 --------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 222 --------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp --------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred --------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 1123456889999997 5789999999999999999999999999999999999
Q ss_pred EEecCC-CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee-CCCEEEEEeCCCcEEecc
Q 011978 409 SWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 409 ~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~~w~ 472 (473)
+|+|++ ++||+|+.|++|+|||+++++....+ +|.+.|++++|+| |+++|+|+|.|++|++|.
T Consensus 276 ~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 276 AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999987 68999999999999999998887665 7999999999998 899999999999999996
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=349.42 Aligned_cols=291 Identities=25% Similarity=0.490 Sum_probs=244.0
Q ss_pred ccccccCCcc-cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 100 ~~~~~~gh~~-~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~---~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
+..++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|+|++|++|+.|++++
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 3456788988 99999999999999999999999999998775332 2368999999999999999999999999999
Q ss_pred EeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC---eEEEEecCccccEEEEEecCC
Q 011978 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 176 iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~ 251 (473)
+|+..++.. ....+.+|...|.++.|+| ++.+|++++.|++|++||+..+ .++..+.+|...|.+++|+++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 999887642 2345789999999999987 4578999999999999999765 456778899999999999998
Q ss_pred C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 252 ~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
+ .|++++.|++|++||.++++...
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~------------------------------------------------------- 186 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVC------------------------------------------------------- 186 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEE-------------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEE-------------------------------------------------------
Confidence 7 68999999999999976543211
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---------------ceE
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---------------KFV 395 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---------------~~~ 395 (473)
...+.+|...|.+++|+|+|++|++|+.|++|++||.... +++
T Consensus 187 ----------------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 187 ----------------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp ----------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred ----------------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 0123457778999999999999999999999999985321 234
Q ss_pred EEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce---------eecccccCCCEEEEEEeeCC-CEEEEEeC
Q 011978 396 AVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL---------KQDLPGHADEVFAVDWSPDG-EKVASGGK 464 (473)
Q Consensus 396 ~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~---------~~~~~~h~~~i~~l~~s~d~-~~l~s~~~ 464 (473)
..+.+ |...|.+++|+|++..|++++.|+.|++|+...... .....+|...|++++|+|++ .+||||+.
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 45555 889999999999999999999999999999875421 12346899999999999998 49999999
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
|++|++|+
T Consensus 325 Dg~v~~W~ 332 (345)
T 3fm0_A 325 DGEVAFWK 332 (345)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-45 Score=367.69 Aligned_cols=324 Identities=36% Similarity=0.622 Sum_probs=288.2
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
+....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 4456678999999999999999999999999999999965 456677889999999999999999999999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~ 257 (473)
... +. ...+.+|...|.++.|+| ++..+++++.|+++++||... ..+..+.+|...|.+++|++++ .++++
T Consensus 291 ~~~-~~-~~~~~~h~~~v~~~~~~~-----~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 291 RNG-QL-LQTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp TTS-CE-EEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCC-cE-EEEEecCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 753 32 235678999999999877 557899999999999999765 4556788999999999999988 58899
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|+.+++||. +++.+..+..|...|.+++++++. ..+++++.
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg------------------------------------~~l~~~~~ 405 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG------------------------------------QTIASASD 405 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS------------------------------------SCEEEEET
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC------------------------------------CEEEEEeC
Confidence 99999999995 678888899999999999988752 35899999
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
|+.+++||.. ......+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+||+++|
T Consensus 406 d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 406 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp TSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred CCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999999953 3445667889999999999999999999999999999996 577888999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++++.|++|++||. +++....+.+|...|++++|+|||++|++++.|+.|++|+
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 99999999999995 5677888999999999999999999999999999999996
No 14
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-46 Score=358.21 Aligned_cols=322 Identities=22% Similarity=0.353 Sum_probs=282.2
Q ss_pred CCcccEEEEEECCCCC-eEEEEeCCCeEEEEeC----CCCc------eeEEEcC----------CCCCEEEEEECCCCCe
Q 011978 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKNWVLCIAWSADGKH 164 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~----~~~~------~~~~~~~----------~~~~v~~l~~s~dg~~ 164 (473)
.|.+.|.+++|+|+++ +||+|+.|+.|++||+ .++. ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3568999999999999 9999999999999999 8777 3444443 6779999999999999
Q ss_pred EEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc--
Q 011978 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-- 242 (473)
Q Consensus 165 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-- 242 (473)
|++++.||.|++|| .+++.. ..+.+|...|.++.|.| ++..+++++.|+.+++||+.+++.+..+..+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEE-EEECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEeCCCeEEEEe-CCCCee-eeccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999 444433 34678999999999987 4568999999999999999999999888887766
Q ss_pred -------------EEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978 243 -------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (473)
Q Consensus 243 -------------v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
+.++.|++++.+++++.|+.|++||+.+++.+..+..|...|.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----------------- 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT----------------- 258 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-----------------
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-----------------
Confidence 88999999999999999999999999999999889999999999988765
Q ss_pred HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
...+++++.|+.+++||..... ....+.+|...+.+++|+|++ ++++++.|+.|++||+
T Consensus 259 -------------------~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 259 -------------------NKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp -------------------TTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred -------------------CCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 2368999999999999987543 345567788999999999999 9999999999999999
Q ss_pred CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--------------------eeecccccCC--CE
Q 011978 390 TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK--------------------LKQDLPGHAD--EV 447 (473)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~--------------------~~~~~~~h~~--~i 447 (473)
.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++ .+..+.+|.. .|
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred CCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 9999999999999999999999999999999999999999999887 7788888976 99
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 448 FAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++++|+|++++|++++.|+.|++|.
T Consensus 398 ~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 398 FDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EEEEECTTSSEEEEEESSSCCEEEE
T ss_pred EEEEccCCCceEEEEecCceEEEEe
Confidence 9999999999999999999999996
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-45 Score=340.99 Aligned_cols=284 Identities=28% Similarity=0.465 Sum_probs=243.5
Q ss_pred cccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
..++.||.+.|.+++|+|++ ++|++|+.|++|++||+.+. .++..+.+|...|.+++|+|+|++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 34678999999999999975 89999999999999998642 3456788999999999999999999999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-- 252 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-- 252 (473)
++||+.+++... .+.+|...|.++.|+| ++..+++++.|++|++||++ +.++..+.+|...|.++.|.+..
T Consensus 90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 999999987643 4678999999999887 45689999999999999996 56777888999999999998742
Q ss_pred -----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCC
Q 011978 253 -----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (473)
Q Consensus 253 -----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (473)
.+++++.|++|++||+++++...
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~---------------------------------------------------- 190 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEA---------------------------------------------------- 190 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEE----------------------------------------------------
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhhe----------------------------------------------------
Confidence 57888888999999887654322
Q ss_pred CCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 328 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~ 407 (473)
.+.+|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+..+ ..|.+
T Consensus 191 ---------------------------~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 191 ---------------------------DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS 242 (319)
T ss_dssp ---------------------------EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred ---------------------------eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence 23356678999999999999999999999999999999999888755 68999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeeccc--------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP--------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 408 v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++|+|++.+|++++.+ .+++|++..+.....+. .|...+.+++|+|||++|++|+.|++|++|+
T Consensus 243 ~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 243 LAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp EEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 9999999999988765 59999998766544332 3556799999999999999999999999996
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-45 Score=339.57 Aligned_cols=290 Identities=34% Similarity=0.633 Sum_probs=257.1
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
....++.||.+.|.+++|+|++++|++|+.|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34556789999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~ 257 (473)
+++++... .+.+|...|.++.|+| ++..+++++.|+.|++||+++++++..+.+|...|.+++|++++ .++++
T Consensus 94 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 94 VSSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp TTTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99887543 4678999999999987 45689999999999999999999999999999999999999987 68899
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|+.|++||+++++.+..+.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~----------------------------------------------------------- 188 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLI----------------------------------------------------------- 188 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-----------------------------------------------------------
T ss_pred eCCCcEEEEECCCCceeeEEe-----------------------------------------------------------
Confidence 999999999998776543221
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE--EEEe-cCC
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ--ISWS-ADS 414 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~--v~~s-p~g 414 (473)
..+...+..++|+|++++|++++.|+.|++||+++++++..+.+|...+.. ..|+ +++
T Consensus 189 -------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 189 -------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp -------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred -------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 012335778999999999999999999999999999999999988765332 3344 678
Q ss_pred CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe--CCCcEEecc
Q 011978 415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLWM 472 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~~w~ 472 (473)
.+|++|+.||.|++||+.+++....+.+|.+.|.+++|+|+++.|++++ .|++|++|.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 9999999999999999999999999999999999999999999999997 699999996
No 17
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-44 Score=361.36 Aligned_cols=368 Identities=18% Similarity=0.307 Sum_probs=302.1
Q ss_pred EeecccccccccCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCC-CCeEEEE
Q 011978 94 IRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSAD-GKHLVSG 168 (473)
Q Consensus 94 ~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~d-g~~l~s~ 168 (473)
++........+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|+++
T Consensus 146 ~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred EEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 3344556677889999999999999998 799999999999999999998888999999 9999999999 9999999
Q ss_pred ecCCeEEEeeCCCCccccccCC---CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc----cc
Q 011978 169 SKAGELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TL 241 (473)
Q Consensus 169 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h----~~ 241 (473)
+.||.|++||+.+++....... +|...|.++.|. ++..+++++.|+.|++||+.+++.+..+..+ ..
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 9999999999998886654435 899999999986 3468999999999999999999998888766 46
Q ss_pred cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH-----------
Q 011978 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP----------- 310 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 310 (473)
.+.++.|..+..+++++.|+.|++||+.+++.+..+.+|...|.++++ ++ +..+..+.....+...
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~ 376 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIV 376 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceE
Confidence 788888875668999999999999999999999999889888888888 55 3333322221111100
Q ss_pred ------HHHH-----HHHHhhhh---------------------------------------------------cccCCC
Q 011978 311 ------EEMK-----KAALERYN---------------------------------------------------KIKGNA 328 (473)
Q Consensus 311 ------~~~~-----~~~~~~~~---------------------------------------------------~~~~~~ 328 (473)
.... ...+..+. .+.-.
T Consensus 377 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 455 (615)
T 1pgu_A 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS- 455 (615)
T ss_dssp EEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC-
T ss_pred EEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc-
Confidence 0000 00000000 00000
Q ss_pred CceEEEecC-CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEE
Q 011978 329 PERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVY 406 (473)
Q Consensus 329 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~ 406 (473)
...+++++. |+.+++||..........+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+ |...|+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence 456778888 899999987653221145667889999999999999999999999999999999999999988 999999
Q ss_pred EEEEec----------CCCEEEEEeCCCcEEEEECCCC-ceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 407 QISWSA----------DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 407 ~v~~sp----------~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+++|+| ++++|++++.||.|++||+.++ +....+.+|...|++++|+||++ |++++.|+.|++|+
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 999999 9999999999999999999987 77888999999999999999999 99999999999996
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-44 Score=344.80 Aligned_cols=287 Identities=31% Similarity=0.523 Sum_probs=245.9
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC------------------CCEEEEEECCCCCeEEE
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK------------------NWVLCIAWSADGKHLVS 167 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~------------------~~v~~l~~s~dg~~l~s 167 (473)
+|.+.|.+++|+|||++||+|+ ++++++|++.++..+..+..|. ..|.+++|+|||++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999999888776665443 24999999999999999
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (473)
|+.|+.|++||+.+++... .+.+|...|.++.|.| ++.++++++.|++|++||++++++...+. +...+.+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence 9999999999999886543 4788999999999987 45689999999999999999999887775 456789999
Q ss_pred ecC-CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 248 ~~~-~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
|++ ++ .+++|+.|+.|++||.++++.+..+...
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~--------------------------------------------- 248 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE--------------------------------------------- 248 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc---------------------------------------------
Confidence 997 65 6889999999999999887665433210
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC------------c
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------------K 393 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~------------~ 393 (473)
.....+|...|.+++|+|+|++|++|+.|++|++||+++. .
T Consensus 249 ---------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 249 ---------------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred ---------------------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 0112357788999999999999999999999999998753 4
Q ss_pred eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee------CCCEEEEEeCCCc
Q 011978 394 FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP------DGEKVASGGKDRV 467 (473)
Q Consensus 394 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~------d~~~l~s~~~D~~ 467 (473)
+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++....+.+|...|.+++|++ ++++|+||+.|++
T Consensus 302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 5567889999999999999999999999999999999999999999999999999999986 6889999999999
Q ss_pred EEecc
Q 011978 468 LKLWM 472 (473)
Q Consensus 468 i~~w~ 472 (473)
|+||+
T Consensus 382 i~iW~ 386 (393)
T 1erj_A 382 ARIWK 386 (393)
T ss_dssp EEEEE
T ss_pred EEECc
Confidence 99996
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-47 Score=362.61 Aligned_cols=327 Identities=16% Similarity=0.279 Sum_probs=278.6
Q ss_pred CcccEEEEEECCCCC-eEEEE----------eCCCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 107 HTEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 107 h~~~V~~~~~sp~~~-~lat~----------s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
+...|.+++|+|+++ +||+| +.|+.|+|||+.++.. ......|...|.+++|+|++++|++++.||.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 334678899999997 89999 8999999999987652 2222368889999999999999999999999
Q ss_pred EEEeeCCC---CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe------EEEE---ecCccc
Q 011978 174 LQCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVIC---LSGHTL 241 (473)
Q Consensus 174 i~iwd~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~------~~~~---~~~h~~ 241 (473)
|++||+.+ +......+.+|...|.++.|+|. ....+++++.|+.|++||+.+++ .... ..+|..
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAK----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCC----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 99999987 23234457889999999999873 24689999999999999998876 3332 367899
Q ss_pred cEEEEEecCC-C-eEEEeecCCeEEEEECCCCceeeeeecc------CceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978 242 AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (473)
Q Consensus 242 ~v~~~~~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
.|.+++|+++ + .+++++.|+.|++||+++++.+..+..+ ...+.+++++++.
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------- 226 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-------------------- 226 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC--------------------
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC--------------------
Confidence 9999999987 3 6889999999999999999988888776 6788999887652
Q ss_pred HHHHHhhhhcccCCCCceEEEecCCc---eEEEEeCCCCCCCeeeec-CcccceeEEEECC-CCcEEEEEECCCcEEEEe
Q 011978 314 KKAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKLWN 388 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd 388 (473)
...+++++.|+ .+++||+.....+...+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 227 ---------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 227 ---------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp ---------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred ---------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 23688999998 999999987666666677 8999999999999 999999999999999999
Q ss_pred CCCCceEEEeeCCccCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeccc--------------------------
Q 011978 389 GTTGKFVAVFRGHVGPVYQISWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP-------------------------- 441 (473)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------------------------- 441 (473)
+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+...+......
T Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 99999999999999999999999999 899999999999999998765432221
Q ss_pred ---------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 442 ---------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 442 ---------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|...+.+++|+|||++|++++.|++|+||+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 372 SVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp CSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 1567788999999999999999999999997
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-44 Score=335.79 Aligned_cols=283 Identities=25% Similarity=0.457 Sum_probs=230.0
Q ss_pred cccccCCcccEEEEEE-----CC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCCCeEEE
Q 011978 101 SATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~-----sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~s 167 (473)
...+.||.+.|++++| ++ ++++|++|+.|++|++||+.+. .+...+.+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4567899999999999 77 8999999999999999998753 345667899999999999999999999
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec---CccccEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVT 244 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~ 244 (473)
|+.|++|++||+++++... .+.+|...|.++.|+| ++.++++++.|++|++||+... +..... +|...|.
T Consensus 94 ~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred EcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 9999999999999887543 4678999999999987 4568999999999999999843 333333 7888999
Q ss_pred EEEecCCC-----------eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978 245 CVKWGGDG-----------VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (473)
Q Consensus 245 ~~~~~~~~-----------~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
+++|++++ .+++++.|++|++||..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------------------------------------------- 202 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-------------------------------------------- 202 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--------------------------------------------
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--------------------------------------------
Confidence 99998864 34555555555555521
Q ss_pred HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-C
Q 011978 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-G 392 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~ 392 (473)
......+.+|...|.+++|+|+|++|++|+.|+.|++||+.. .
T Consensus 203 ------------------------------------~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 203 ------------------------------------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp ------------------------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred ------------------------------------CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 112223456778899999999999999999999999999954 4
Q ss_pred ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--ccc-----------ccCCCEEEEEEeeCCCEE
Q 011978 393 KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLP-----------GHADEVFAVDWSPDGEKV 459 (473)
Q Consensus 393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~--~~~-----------~h~~~i~~l~~s~d~~~l 459 (473)
.....+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+. +|...|++++|+|+|++|
T Consensus 247 ~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 247 YPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 4444443 45679999999999888755 57889999998765432 332 688899999999999999
Q ss_pred EEEeCCCcEEecc
Q 011978 460 ASGGKDRVLKLWM 472 (473)
Q Consensus 460 ~s~~~D~~i~~w~ 472 (473)
++|+.|++|++|.
T Consensus 325 ~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 325 FAGFTDGVIRTFS 337 (343)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEecCCceEEEEE
Confidence 9999999999996
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=335.22 Aligned_cols=288 Identities=22% Similarity=0.401 Sum_probs=230.2
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEE-cC-CCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~-~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
+...+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++ .....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34567899999999999998 9999999999999999875 333444 34 999999999999999999999999999
Q ss_pred EeeCCCCc------cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----CeEEEEecCccccEEE
Q 011978 176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC 245 (473)
Q Consensus 176 iwd~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~ 245 (473)
+||..... .....+.+|...|.++.|+| ++.++++|+.|++|++||+.. .+++..+.+|...|.+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 99985422 12234678999999999987 457899999999999999943 3577788999999999
Q ss_pred EEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (473)
Q Consensus 246 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
++|++++ .|++|+.|++|++||..++...
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~-------------------------------------------------- 188 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWE-------------------------------------------------- 188 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEE--------------------------------------------------
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCee--------------------------------------------------
Confidence 9999987 6889999999999997543110
Q ss_pred cCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEeCCCC--------ce
Q 011978 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--------KF 394 (473)
Q Consensus 325 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd~~~~--------~~ 394 (473)
....+.+|...|.+++|+|+ +.+|++|+.|++|++||+..+ .+
T Consensus 189 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 189 ---------------------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp ---------------------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred ---------------------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 01123467778899999998 779999999999999998654 34
Q ss_pred EEEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--ee-ecccccCC-CEEEEEEee--CCCEEEEEeCCCc
Q 011978 395 VAVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK--LK-QDLPGHAD-EVFAVDWSP--DGEKVASGGKDRV 467 (473)
Q Consensus 395 ~~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~--~~-~~~~~h~~-~i~~l~~s~--d~~~l~s~~~D~~ 467 (473)
...+.+ |...|.+++|++++ +|++++.||+|++||..+++ .. ..+.+|.. .|++++|+| ++++|++|+.|++
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 455555 99999999999765 89999999999999998763 22 33467877 899999999 7899999999999
Q ss_pred EEecc
Q 011978 468 LKLWM 472 (473)
Q Consensus 468 i~~w~ 472 (473)
|+||.
T Consensus 321 v~~W~ 325 (330)
T 2hes_X 321 VNFWS 325 (330)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 22
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-43 Score=368.48 Aligned_cols=360 Identities=14% Similarity=0.144 Sum_probs=278.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 184 (473)
..|...|.+++|+| |++|++++.|++|++||+.+++.+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 35888999999999 8899999999999999999988877775 668899999999999999999999999999988764
Q ss_pred cc----------ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc---------------
Q 011978 185 SG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--------------- 239 (473)
Q Consensus 185 ~~----------~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h--------------- 239 (473)
.. ....+|...|.+++|+|.. ...+++|+.|+.| +||+++++++..+.+|
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRD----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTE----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred ccceeccccccccccccCCCCeEEEEEccCC----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence 21 2357899999999999832 3578999999999 9999999998888766
Q ss_pred ---cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeee--e---ec-------------cCceEEEEEecc----c-
Q 011978 240 ---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--L---KG-------------HGHWVNSLALST----E- 292 (473)
Q Consensus 240 ---~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~--~---~~-------------~~~~v~~~~~~~----~- 292 (473)
...|.+++|++++ .|++|+.|++|++||+++++.+.. + .. +...|.++++.+ +
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 4679999999998 589999999999999999887653 2 11 234688888742 2
Q ss_pred -ceeeeccccCC-----Ccc-----------------------------cC----------------CHHH---------
Q 011978 293 -YALRTGAFDHT-----GKQ-----------------------------YS----------------SPEE--------- 312 (473)
Q Consensus 293 -~~~~~~~~~~~-----~~~-----------------------------~~----------------~~~~--------- 312 (473)
..+..+..+.. ... +. .+..
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 12222211100 000 00 0000
Q ss_pred ------------------------------------------------HHHHHHh----hhhcccC-----------CCC
Q 011978 313 ------------------------------------------------MKKAALE----RYNKIKG-----------NAP 329 (473)
Q Consensus 313 ------------------------------------------------~~~~~~~----~~~~~~~-----------~~~ 329 (473)
....... ....+.+ ...
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 0000000 0000000 123
Q ss_pred ceEEEecCCceEEEEeCCCCCCCe-ee----e-----cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPK-TR----M-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------ 393 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~-~~----~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------ 393 (473)
..+++|+.|++|++||........ .. + .+|...|.+++|+|||++||+|+.||+|+|||+.+++
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 478999999999999987653211 11 1 1788899999999999999999999999999987652
Q ss_pred ---------------------------------------eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 394 ---------------------------------------FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 394 ---------------------------------------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
++..+.+|.++|++|+||||| +||+|+.|++|+|||++++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 467888999999999999999 9999999999999999887
Q ss_pred ceee-----ccc-ccCCCEEEEEEe-----eCC---CEEEEEeCCCcEEecc
Q 011978 435 KLKQ-----DLP-GHADEVFAVDWS-----PDG---EKVASGGKDRVLKLWM 472 (473)
Q Consensus 435 ~~~~-----~~~-~h~~~i~~l~~s-----~d~---~~l~s~~~D~~i~~w~ 472 (473)
..+. .+. +|...|++++|+ ||| ++|++|+.|++|++|+
T Consensus 607 ~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 607 AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred eEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 6542 454 899999999999 885 8999999999999996
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-43 Score=330.32 Aligned_cols=320 Identities=16% Similarity=0.272 Sum_probs=275.8
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
|.++|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ ||.|++||+.+++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 566889999999999999988888777776665555555568999999999999999999999 9999999998765332
Q ss_pred cc----CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCccccEEEEEecCCC-eEEEeec
Q 011978 187 NP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 187 ~~----~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~s~~~ 259 (473)
.. ..+|...|.++.|+| ++..+++++.|+.|++||+.+++ ....+.+|...|.+++|++++ .+++++.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 22 127889999999987 45689999999999999999877 667788999999999999987 6889999
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
|+.|++||+++++.+..+..|...+.+++++++ ...+++++.|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg 205 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN 205 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence 999999999999999999999999999988765 24688999999
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 419 (473)
.+++||+...... ....+...+.+++|+|++++|++++.|+.|++||..+++.. .+..|...|.+++|+|++++|++
T Consensus 206 ~i~~~d~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 206 TVRSWDLREGRQL--QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEEETTTTEEE--EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEECCCCceE--eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence 9999998654322 22346778999999999999999999999999999988754 56789999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 420 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++.||.|++||+.+++..... .|...|.+++|+|++++|++++.|+.|++|+
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999999999999998776544 4788999999999999999999999999996
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-43 Score=366.18 Aligned_cols=356 Identities=12% Similarity=0.108 Sum_probs=267.7
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 184 (473)
.||.+.|.+++|+|++++||+|+.||+|+||+..+......+ .|..+|.+++|+| |++|++++.|++|++||+.+++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 479999999999999999999999999999999877655543 4788999999999 88999999999999999998876
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-----------EEecCccccEEEEEecCC--
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGD-- 251 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~-- 251 (473)
.... .|...|.++.|+| ++.++++|+.||+|++||+.++++. ..+.+|...|.+++|+|+
T Consensus 92 ~~~~--~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 92 LTTV--FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEEE--ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEEE--cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 5432 2667899999887 5678999999999999999988764 234678999999999996
Q ss_pred CeEEEeecCCeEEEEECCCCceeeeeecc------------------CceEEEEEecccce-eeeccccCCCcccCCHHH
Q 011978 252 GVIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 312 (473)
+.+++|+.|+.| +||+++++.++.+..| ...|.+++++|+.. +.++..|...+.|.....
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 378899999999 9999999988877655 46799999999864 455555555444432110
Q ss_pred HHHHHHhhh-----hcc---------cCCC------------C---ceEEEecCC-----ceEEEEe-------------
Q 011978 313 MKKAALERY-----NKI---------KGNA------------P---ERLVSGSDD-----FTMFLWE------------- 345 (473)
Q Consensus 313 ~~~~~~~~~-----~~~---------~~~~------------~---~~l~~~~~d-----~~i~iwd------------- 345 (473)
.. ...... ... .... + ..+++|+.| ..+.+|+
T Consensus 244 ~~-~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 244 HM-IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CE-EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred cE-EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 00 000000 000 0011 1 134555443 1444444
Q ss_pred ----------------------------------------------------------CCCCCCCee-------------
Q 011978 346 ----------------------------------------------------------PAVSKQPKT------------- 354 (473)
Q Consensus 346 ----------------------------------------------------------~~~~~~~~~------------- 354 (473)
...+.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 211100000
Q ss_pred ---------------------------eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEe----e--
Q 011978 355 ---------------------------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVF----R-- 399 (473)
Q Consensus 355 ---------------------------~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~----~-- 399 (473)
.+.+|...+.+++|+|++++||+|+.|++|++||+.+++.. ..+ .
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 01223333445566899999999999999999999887531 111 1
Q ss_pred ---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------------------------------------
Q 011978 400 ---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK----------------------------------------- 435 (473)
Q Consensus 400 ---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~----------------------------------------- 435 (473)
+|...|++|+|+|||++||+|+.||+|+|||+.+++
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 789999999999999999999999999999997652
Q ss_pred ----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 436 ----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 436 ----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+..+.+|.+.|++++||||| +||+|+.|++|+||+
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 256678899999999999999 999999999999996
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-42 Score=320.34 Aligned_cols=286 Identities=27% Similarity=0.500 Sum_probs=237.9
Q ss_pred ccccccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
+..+|.||++.|++|+|+|+ +++|||||.|++|+|||+.+.. +...+.+|...|.+++|+|+|++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34578999999999999998 6899999999999999987643 45567899999999999999999999999999
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE-EEEecCccccEEEEEecCCC
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG 252 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~ 252 (473)
|++|+........ ....+...+....+.+ ....+++++.|+.+++||...... .....+|...+.+++|.+++
T Consensus 110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 9999998766443 2344555666666554 456899999999999999876544 34567899999999998654
Q ss_pred ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.+++++.|+.|++||+++++.+..+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~---------------------------------------------------- 211 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNH---------------------------------------------------- 211 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------------------
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEe----------------------------------------------------
Confidence 5788999999999998876554332
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
.+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..+ ..|.+++
T Consensus 212 ---------------------------~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 212 ---------------------------IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred ---------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 245567899999999999999999999999999999999888755 5899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeec---------ccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQD---------LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~---------~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|++.++ +++.|+.|++||++++..... ..+|...|++++|+|||++|++|+.|++|+||+
T Consensus 264 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 264 FSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp ECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 99988655 556799999999988765443 346888999999999999999999999999996
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.2e-42 Score=331.59 Aligned_cols=317 Identities=27% Similarity=0.514 Sum_probs=279.0
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.||.+.|.. +++++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++.|++|+.||.|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3467899997643 255579999999999999999999999998999999999999997 5699999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d 260 (473)
+++... .+.+|...|.++.|.+ ..+++++.||+|++||+.+++++..+.+|...|.++.|+ +..+++|+.|
T Consensus 188 ~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 258 (445)
T 2ovr_B 188 TGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYD 258 (445)
T ss_dssp TTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETT
T ss_pred cCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcCC
Confidence 887653 4678999999998853 579999999999999999999999999999999999994 4579999999
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
+.|++||+++++.+..+.+|...|.++.+. ...+++++.|+.
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~ 300 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDTS 300 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTSC
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCCe
Confidence 999999999999999999999889888762 236899999999
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEEEEEEecCCCEE
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQISWSADSRLL 417 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~~v~~sp~g~~l 417 (473)
+++||..... ....+.+|...+.++++ ++++|++|+.||.|++||+++++.+..+.+ |...|.+++|+ +++|
T Consensus 301 i~i~d~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 301 IRVWDVETGN-CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp EEEEETTTCC-EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred EEEEECCCCC-EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 9999987543 44566788888888776 567999999999999999999999999886 88899999995 6799
Q ss_pred EEEeCCCcEEEEECCCCceeecc-----cccCCCEEEEEEeeCCCEEEEEeCCCc----EEecc
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGKDRV----LKLWM 472 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~~w~ 472 (473)
++|+.||.|++||+.+++....+ .+|...|++++|+|++.++++|+.||+ +.+|+
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence 99999999999999999887766 468889999999999999999999998 88885
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.2e-42 Score=375.09 Aligned_cols=342 Identities=23% Similarity=0.417 Sum_probs=284.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|.+.|++++|+|+|++||+|+.||+|++||+.++..+..+.+|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~ 259 (473)
+++... .+.+|...|.++.|.|.. +...+++++.|+.|++||+.+++++..+.+|...|.+++|++++ .+++++.
T Consensus 688 ~~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 688 TGKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp TCCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred CCceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 987654 467899999999998732 33578999999999999999999999999999999999999987 6889999
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEeccc--ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
||+|++||+.+++....+............... .......+ ......+++++
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------s~dg~~l~~~~- 817 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW-------------------------SADGDKIIVAA- 817 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB-------------------------CTTSSEEEEEE-
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE-------------------------CCCCCEEEEEc-
Confidence 999999999988776655432211100000000 00000001 01123455554
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
++.+.+||............+|...+.+++|+|+++++++++.|+.|++||..++..+..+.+|.+.|.+++|+|+|++|
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEE
Confidence 78999999887766666666899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCC----------------------------------------------------------------
Q 011978 418 LSGSKDSTLKVWDIRT---------------------------------------------------------------- 433 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~---------------------------------------------------------------- 433 (473)
++++.||.|++||+..
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 9999999999998531
Q ss_pred ---------------CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 434 ---------------QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 434 ---------------~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++....+.+|...|.+++|+|||++|++++.|+.|++|+
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 223344567888999999999999999999999999996
No 28
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-43 Score=339.21 Aligned_cols=341 Identities=18% Similarity=0.196 Sum_probs=273.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+.+++++|+|++++|++++.|+.|++||+.++.....+..| ..+....|+|++++|++|+.||.|++||+.+++.. ..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 134 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EI 134 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-ee
Confidence 34557899999999999999999999999877655444455 44555678999999999999999999999887654 34
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd 267 (473)
+.+|...|.++.|+| ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|++++ .+++++.|++|++||
T Consensus 135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 678999999999987 45689999999999999999999999999999999999999987 588999999999999
Q ss_pred CCCCceeeeeec---cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 268 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
+++++.+..+.. +...+.++++.+............. . ...........+++++.|+.+++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v-------------~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK--K-------------NNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC--C-------------CTTCSSCTTEEEEEEETTSCEEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc--c-------------cceEEcCCCCEEEEEcCCCeEEEE
Confidence 999998888864 5567777776543211000000000 0 000011234578999999999999
Q ss_pred eCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCCce-EEEeeC-CccCEEEEEEecCCCEEEEEe
Q 011978 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~~~-~~~~~~-h~~~v~~v~~sp~g~~l~s~s 421 (473)
|+...........+|...|.+++|+|+++ +|++|+.||.|++||+++++. +..+.+ |...|.++.| +++++|++++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec
Confidence 99876655555667889999999999999 999999999999999998754 667766 6778888855 5788999999
Q ss_pred CCCcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCC---EEEEEeCCCcEEecc
Q 011978 422 KDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM 472 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~~w~ 472 (473)
.||.|++||+.... ....+.+|...|.+++|+||++ .+++++.++.+.+|.
T Consensus 354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 354 FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 99999999987631 1223557888999999999999 888889999999996
No 29
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-41 Score=342.78 Aligned_cols=364 Identities=18% Similarity=0.257 Sum_probs=278.4
Q ss_pred cccccccCCccc-EEEEEECC--CCCeEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEECCCCCeEEE
Q 011978 99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (473)
Q Consensus 99 ~~~~~~~gh~~~-V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~l~~s~dg~~l~s 167 (473)
.....+.+|.+. |.+++|+| ++++||+|+.||.|++||+.++ .....+..|...|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 456678899999 99999999 9999999999999999999754 455667789999999999999999999
Q ss_pred EecC----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc--
Q 011978 168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-- 241 (473)
Q Consensus 168 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-- 241 (473)
++.+ +.|++||. ++.. ..+.+|...|.++.|+|.. ...+++++.|+.|++||+.+++.+..+.+|..
T Consensus 134 ~~~~~~~~~~v~~~d~--~~~~-~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDS--GNSL-GEVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp EECCSSCSEEEEETTT--CCEE-EECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred eccCCCCccEEEEEEC--CCcc-eeeecCCccEEEEEECCCC----CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 9988 78999983 3333 3567899999999998732 12799999999999999999999999999999
Q ss_pred -cEEEEEecCC-C-eEEEeecCCeEEEEECCCCceeeee-e---ccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978 242 -AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 242 -~v~~~~~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.|.+++|+++ + .+++++.|+.|++||+.+++.+..+ . .|...|.++.++....+..+..+.....|.......
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcE
Confidence 9999999998 6 5889999999999999999999988 6 899999999998222344444443322221110000
Q ss_pred HHHH--------hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----------------------------
Q 011978 315 KAAL--------ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG---------------------------- 358 (473)
Q Consensus 315 ~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------- 358 (473)
.... .............+++++.|+.+++||..... ....+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 0000 00000000123456677777777777654211 1111111
Q ss_pred -----cc-------------------------------------------------------------------------
Q 011978 359 -----HQ------------------------------------------------------------------------- 360 (473)
Q Consensus 359 -----~~------------------------------------------------------------------------- 360 (473)
|.
T Consensus 366 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (615)
T 1pgu_A 366 SMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 445 (615)
T ss_dssp EEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred hhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeeccc
Confidence 22
Q ss_pred -cceeEEEECCCCcEEEEEEC-CCcEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 361 -QLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 361 -~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
..+.+++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|.+++|+|+|++|++++.||.|++||+.+++..
T Consensus 446 ~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 446 NSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 523 (615)
T ss_dssp SSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence 223333333 556666776 777777777766554 567789999999999999999999999999999999999999
Q ss_pred ecccc-cCCCEEEEEEee----------CCCEEEEEeCCCcEEecc
Q 011978 438 QDLPG-HADEVFAVDWSP----------DGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 438 ~~~~~-h~~~i~~l~~s~----------d~~~l~s~~~D~~i~~w~ 472 (473)
..+.+ |...|++++|+| ++++|++++.|+.|++|.
T Consensus 524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 88888 999999999999 999999999999999996
No 30
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-42 Score=376.84 Aligned_cols=388 Identities=23% Similarity=0.380 Sum_probs=311.7
Q ss_pred cccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE
Q 011978 78 VEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (473)
Q Consensus 78 ~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~ 145 (473)
...+..+.+.|.. .++++.. ......+.+|.+.|.+++|+|++++||+++.|++|++||+.+++.+..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 3455666666543 2334433 345567789999999999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEECC--CCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978 146 CTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~ 223 (473)
+.+|...|.+++|+| ++..+++|+.|+.|++||+.+++... .+.+|...|.++.|+| ++..+++++.||.|+
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTLR 768 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeEE
Confidence 999999999999999 55689999999999999999887553 4678999999999987 456899999999999
Q ss_pred EEECCCCeEEEEe-------------------------------------------------------cCccccEEEEEe
Q 011978 224 IWDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVKW 248 (473)
Q Consensus 224 iwd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~~ 248 (473)
+||+.+++....+ .+|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9998776543322 267788899999
Q ss_pred cCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccce-eeeccccCCCcccCCHHHHHHHHHhh------
Q 011978 249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALER------ 320 (473)
Q Consensus 249 ~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------ 320 (473)
++++ .+++++.|+.|++||+.++..+..+.+|...|.+++++++.. +.++..+.....|.............
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 9887 588999999999999999999999999999999999998764 44555555444443221100000000
Q ss_pred -----------------------------------hh-cccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccccee
Q 011978 321 -----------------------------------YN-KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (473)
Q Consensus 321 -----------------------------------~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 364 (473)
.. .........+++++.++.+.+|+.... .......+|...|.
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVR 1007 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceE
Confidence 00 001123457889999999999998654 34556678888999
Q ss_pred EEEECCCCcEEEEEECCCcEEEEeCCCC----------------------------------------ceEEEeeCCccC
Q 011978 365 HVYFSPDGQWVASASFDKSIKLWNGTTG----------------------------------------KFVAVFRGHVGP 404 (473)
Q Consensus 365 ~v~~sp~g~~lasgs~d~~v~lwd~~~~----------------------------------------~~~~~~~~h~~~ 404 (473)
+++|+|+|++|++++.|+.|++||..++ +....+.+|.+.
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc
Confidence 9999999999999988888888876554 333456678889
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 405 VYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 405 v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|.+++|+|++++|++++.||+|++||+.+++....+.+|...|++++|+|||++|++++.||.|++|+
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999999999999999999999999998899999999999999999999999999999999996
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-41 Score=347.09 Aligned_cols=284 Identities=29% Similarity=0.506 Sum_probs=240.2
Q ss_pred ccccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEE
Q 011978 102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~ 175 (473)
..+.+|++.|++++|+|++ ++|++|+.|++|++||+.+. .....+.+|...|.+++|+|+|++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4578999999999999875 78999999999999998753 23456789999999999999999999999999999
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEEEEEecCCC
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG 252 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~ 252 (473)
+||+.+++... .+.+|...|.++.|+| ++.++++++.|++|++||.......... .+|...|.|++|++++
T Consensus 456 vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 456 LWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 99999887543 4678999999999987 4578999999999999998755433322 4788899999999875
Q ss_pred ---eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.+++++.|++|++||+++++....
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~----------------------------------------------------- 556 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRST----------------------------------------------------- 556 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------------------
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------------------
Confidence 589999999999999876554332
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
+.+|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.. ...|.+++
T Consensus 557 --------------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 557 --------------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC 609 (694)
T ss_dssp --------------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred --------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence 235667789999999999999999999999999999998888764 46899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceeecccccC-------------------CCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-------------------DEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-------------------~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
|+|++.+|++++ |+.|++||+++++....+..+. ..+++++|||||++|+||+.||+|++
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999999888776 5669999999887765543221 13788999999999999999999999
Q ss_pred cc
Q 011978 471 WM 472 (473)
Q Consensus 471 w~ 472 (473)
|.
T Consensus 689 W~ 690 (694)
T 3dm0_A 689 WG 690 (694)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-41 Score=316.68 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=247.9
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
..+.||.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-----CcEEEEECCCCe-----------EEEEecCccc--cE
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--AV 243 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-----g~i~iwd~~~~~-----------~~~~~~~h~~--~v 243 (473)
++...... +...+.++.|.| ++..+++++.+ +.+++||+.... ....+.+|.. .+
T Consensus 106 ~~~~~~~~--~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 106 GQCVATWK--SPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred CcEEEEee--cCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 87654332 778899999987 45689999988 999999987542 2233445555 88
Q ss_pred EEEEecCCC-eEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 244 ~~~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
.+++|++++ .+++++.||.|++||+++ ++.+..
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------------- 213 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS--------------------------------------------- 213 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE---------------------------------------------
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE---------------------------------------------
Confidence 889998877 577888889999998876 332221
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h 401 (473)
+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +
T Consensus 214 ----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~ 258 (369)
T 3zwl_B 214 ----------------------------------IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T 258 (369)
T ss_dssp ----------------------------------EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred ----------------------------------EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence 22355678899999999999999999999999999999988887 7
Q ss_pred ccCEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 402 VGPVYQISWSADSRLLLSGSKDS--------------TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg--------------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
...+.+++|+|+++++++++.++ .+++||+.+++....+.+|...|.+++|+||+++|++++.|+.
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 78999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 011978 468 LKLWM 472 (473)
Q Consensus 468 i~~w~ 472 (473)
|++|.
T Consensus 339 v~iw~ 343 (369)
T 3zwl_B 339 IRLHH 343 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7e-42 Score=326.52 Aligned_cols=293 Identities=20% Similarity=0.261 Sum_probs=251.2
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEECCC----C---CeEEE
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLVS 167 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~------~~~~~~~~~~~v~~l~~s~d----g---~~l~s 167 (473)
...+.+|.+.|++++|+| ++|++|+.||+|++||+.++. ....+.+|...|.+++|+|+ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 345789999999999999 899999999999999998877 67778899999999999999 9 99999
Q ss_pred EecCCeEEEeeCCCCccc----cccCCCc-----CCcEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCC------Ce
Q 011978 168 GSKAGELQCWDPQTGKPS----GNPLSGH-----KKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSL------RK 231 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~----~~~~~~~-----~~~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~------~~ 231 (473)
++.||.|++||+.+++.. ...+..| ...|.++.|.+... +++.. +++++.||.|++||+.. ++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-CCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999877641 2345667 58999999982100 14467 99999999999999988 55
Q ss_pred EEE-----Ee-------cCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 232 CVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 232 ~~~-----~~-------~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.+. .+ ..|...|.+++|++++.+++++.|+.|++||+++++.+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------- 225 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES-------------------- 225 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec--------------------
Confidence 544 55 4588899999999988778899999999999987765543321
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc---ccceeEEEECCCCcEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVA 376 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~v~~sp~g~~la 376 (473)
..+| ...+.+++|+|++++|+
T Consensus 226 --------------------------------------------------------~~~h~~~~~~i~~i~~~~~~~~l~ 249 (397)
T 1sq9_A 226 --------------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLA 249 (397)
T ss_dssp --------------------------------------------------------CC---CCCCCEEEEEECSSTTEEE
T ss_pred --------------------------------------------------------cccccccCCccceEEECCCCCEEE
Confidence 0113 45689999999999999
Q ss_pred EEECC---CcEEEEeCCCCceEEEeeC-------------CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 377 SASFD---KSIKLWNGTTGKFVAVFRG-------------HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 377 sgs~d---~~v~lwd~~~~~~~~~~~~-------------h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
+++.| +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 99999 9999999999999999998 9999999999999999999999999999999999888888
Q ss_pred c------cc---------------CCCEEEEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978 441 P------GH---------------ADEVFAVDWSPDG----------EKVASGGKDRVLKLWM 472 (473)
Q Consensus 441 ~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~~w~ 472 (473)
. +| ...|++++|+|++ ++|++++.|+.|++|+
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 8 77 8999999999998 7999999999999996
No 34
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-41 Score=324.46 Aligned_cols=291 Identities=26% Similarity=0.513 Sum_probs=233.2
Q ss_pred cccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE
Q 011978 78 VEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (473)
Q Consensus 78 ~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~ 145 (473)
...+..+.+.|.. .++++.. ..+...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+...+..
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence 3456667776642 2344443 345677899999999999999999999999999999999999888888
Q ss_pred EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw 225 (473)
+.+|...|.+++|+|++++|++|+.|++|++||+.++.... .+.+|...|..+.++| ++..+++|+.|++|++|
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEEE
Confidence 89999999999999999999999999999999999887653 4678999999998876 56789999999999999
Q ss_pred ECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCc
Q 011978 226 DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
|+.++++...+.+|...|.+++|++++........ .+.....
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~----------------------------- 303 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEA---------TGSETKK----------------------------- 303 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC---------CSCC--------------------------------
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhh---------ccccccc-----------------------------
Confidence 99999999999999999999999986421000000 0000000
Q ss_pred ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEE
Q 011978 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~ 385 (473)
.......+++|+.|+++++||+.... ....+.+|...|++++|+|+|++|++|+.|++|+
T Consensus 304 -------------------~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 304 -------------------SGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp -----------------------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred -------------------cCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 00012245666666666666654332 2344567888899999999999999999999999
Q ss_pred EEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 386 LWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
+||+.+++++..+.+|.+.|++++|+|++.+|++||.||+|++|+++
T Consensus 364 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999864
No 35
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=310.68 Aligned_cols=247 Identities=27% Similarity=0.454 Sum_probs=224.7
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.||...|.+++|+|++..+++++.|++|++||+.+++++..+..|...+.+++|+|++++|++|+.||.|++|+++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 34578999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeec
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~ 259 (473)
+++... .+..|...+.++.|+| ++.++++++.|+.|++||+++++.+..+.+|...|.+++|++++ .|++|+.
T Consensus 153 ~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 153 SGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp TCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred CCceeE-EecCCCceEEEEEECC-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 887543 4567888899999987 56789999999999999999999999999999999999999987 5889999
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
|++|++||+++++....
T Consensus 227 dg~i~iwd~~~~~~~~~--------------------------------------------------------------- 243 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGT--------------------------------------------------------------- 243 (321)
T ss_dssp TSCEEEEETTTCCEEEE---------------------------------------------------------------
T ss_pred CCeEEEEECCCcceeEE---------------------------------------------------------------
Confidence 99999999876554332
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 419 (473)
+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++
T Consensus 244 ----------------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 244 ----------------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp ----------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ----------------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 2346667899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECC
Q 011978 420 GSKDSTLKVWDIR 432 (473)
Q Consensus 420 ~s~Dg~i~iwd~~ 432 (473)
++.||+|++||..
T Consensus 308 ~~~d~~i~vwd~p 320 (321)
T 3ow8_A 308 VGDDQEIHIYDCP 320 (321)
T ss_dssp EETTCCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 9999999999963
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-40 Score=320.74 Aligned_cols=321 Identities=25% Similarity=0.417 Sum_probs=274.1
Q ss_pred cccccCCcccE-EEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 101 SATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 101 ~~~~~gh~~~V-~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
...+.+|...| .++++ ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34678999885 56566 67899999999999999999999999999999999999999988 9999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-----------------------EEEEe
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVICL 236 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-----------------------~~~~~ 236 (473)
++++... .+.+|...|.++.|.+. .+...+++++.|++|++||+.++. .+..+
T Consensus 191 ~~~~~~~-~~~~h~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 191 KKGCCTH-VFEGHNSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp TTTEEEE-EECCCSSCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred CCCcEEE-EECCCCCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 9887553 46789999999998863 245689999999999999998764 35567
Q ss_pred cCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978 237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (473)
Q Consensus 237 ~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
.+|...|.++..+ ...+++++.|+.|++||+.+++.+..+.+|...|.+++++++
T Consensus 267 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 321 (464)
T 3v7d_B 267 RGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE------------------------ 321 (464)
T ss_dssp CCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT------------------------
T ss_pred cCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC------------------------
Confidence 8899999988654 347899999999999999999999999999999999998765
Q ss_pred HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE
Q 011978 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396 (473)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~ 396 (473)
...+++++.|+.+++||.... .....+.+|...|.+++|+ +++|++|+.||.|++||+.+++...
T Consensus 322 ------------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 322 ------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp ------------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ------------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence 236899999999999998654 3455677899999999997 5899999999999999999987666
Q ss_pred EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 397 VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 397 ~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
.+. |...+..++|+|++++|++++ ||.|++||+.+++.+.. +.+|...|.+++|+ +...+++++.|+.+.+|
T Consensus 387 ~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 387 SYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred eec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 554 666788899999999999998 89999999999988875 67788999999998 44556666777777665
No 37
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=329.62 Aligned_cols=318 Identities=15% Similarity=0.228 Sum_probs=235.1
Q ss_pred ccccccc-cCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCC---Cc---eeEEEcCCCCCEEEEEECCCCCeEEEEe
Q 011978 98 NRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (473)
Q Consensus 98 ~~~~~~~-~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~---~~---~~~~~~~~~~~v~~l~~s~dg~~l~s~~ 169 (473)
.++...+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|.+++|+|++++|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 3445566 88999999999999 999999999999999999865 32 22333 5899999999999999999999
Q ss_pred cCCeEEEeeCC---CCccccccCCC------------cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978 170 KAGELQCWDPQ---TGKPSGNPLSG------------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (473)
Q Consensus 170 ~dg~i~iwd~~---~~~~~~~~~~~------------~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~ 234 (473)
.||.|++||+. +++... ...+ +...+.++.+. ...++..+++++.|+.|++||+++++++.
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAVRMRAF---VNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEEEEEEE---ECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCceEEEEE---EcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 99999999984 443221 1111 33334444322 23456799999999999999999999999
Q ss_pred EecC--ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 235 CLSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 235 ~~~~--h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
.+.+ |...|++++|++++ .+++|+.||+|++||+++++.+..+. .|...|.++.+.+.+.
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s---------------- 270 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG---------------- 270 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC----------------
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC----------------
Confidence 9988 89999999999987 58899999999999999988877765 5555666665443210
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
.....+++++.|+.+++||..... ....+.+|...+..+.|+|+++.+ .+.
T Consensus 271 ----------------~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l----~~~-------- 321 (437)
T 3gre_A 271 ----------------KNSVIVVGGSSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGL----EEL-------- 321 (437)
T ss_dssp ----------------TTEEEEEEESTTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSG----GGC--------
T ss_pred ----------------CCccEEEEEcCCCcEEEEEcCCCc-EEEEEEcCCCCCccceeccccccc----ccc--------
Confidence 001235555555555555543322 223334444444445555544433 010
Q ss_pred CCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--------------------------
Q 011978 391 TGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------------------------- 442 (473)
Q Consensus 391 ~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------------------- 442 (473)
.+.+ |...|++++|+ ++++|++|+.||.|++||+.+++....+.+
T Consensus 322 ------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (437)
T 3gre_A 322 ------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR 394 (437)
T ss_dssp ------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred ------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence 0223 77789999999 779999999999999999998876665554
Q ss_pred -----------cCCCEEEEEEeeC--CCEEEEEeCCCcEEecc
Q 011978 443 -----------HADEVFAVDWSPD--GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 443 -----------h~~~i~~l~~s~d--~~~l~s~~~D~~i~~w~ 472 (473)
|.+.|++++|+++ +.+|+||+.||.|+||.
T Consensus 395 ~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 395 TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999995
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=305.40 Aligned_cols=281 Identities=27% Similarity=0.378 Sum_probs=245.8
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
+....+.+|.+.|.+++| |++++|++|+.||.|++||+.++.....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 345677899999999999 9999999999999999999998888888888999999999999999999999999999999
Q ss_pred CCCCc--cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-C-CeE
Q 011978 179 PQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-D-GVI 254 (473)
Q Consensus 179 ~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l 254 (473)
+.... .....+.+|...|.++.|. +..+++++.|+.|++|| .++....+.+|...+.++.|.+ + ..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred eeecCCCCcccchhhcccCEEEEEec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 87653 2233467899999999883 35899999999999999 6778888889999999999976 4 478
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++++.|+.|++||.. +....+.
T Consensus 159 ~~~~~d~~i~i~d~~--~~~~~~~-------------------------------------------------------- 180 (313)
T 3odt_A 159 LTASADKTIKLWQND--KVIKTFS-------------------------------------------------------- 180 (313)
T ss_dssp EEEETTSCEEEEETT--EEEEEEC--------------------------------------------------------
T ss_pred EEEECCCCEEEEecC--ceEEEEe--------------------------------------------------------
Confidence 899999999999832 2211111
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
..|...+.+++|+|++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 181 ----------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 181 ----------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp ----------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred ----------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 11456788999999999 9999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 415 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|++++.||.|++||+.+++....+..|...|.+++|+|+++ +++++.|+.|++|+
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 688999999999999999999999999999999999999998 67799999999996
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.4e-41 Score=315.69 Aligned_cols=300 Identities=16% Similarity=0.248 Sum_probs=247.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~ 182 (473)
..|.++|.+++|+|++++||+++.|+.|++||+.++. ....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999886 77788899999999999999999999999999999999887
Q ss_pred cccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccccEEEEEecCCC-eEEE
Q 011978 183 KPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 183 ~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~s 256 (473)
+... ..+..|...|.++.|+| ++.++++++.|+.+++||+..+. ......+|...|.+++|++++ .+++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred eeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 6322 23467889999999987 45789999999999999998765 233446789999999999987 6889
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
++.|+.|++||+...........
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 182 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAP--------------------------------------------------------- 182 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCC---------------------------------------------------------
T ss_pred EcCCCCEEEEEcccccccccccc---------------------------------------------------------
Confidence 99999999999864321100000
Q ss_pred CCceEEEEeC-CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 337 DDFTMFLWEP-AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 337 ~d~~i~iwd~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
..|.. .........+.+|...+.+++|+|++++|++++.|+.|++||+++++++..+..|..+|.+++|+|+++
T Consensus 183 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 183 -----TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 257 (372)
T ss_dssp -----BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE
T ss_pred -----cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC
Confidence 00000 001122334456788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCC--Cce--------------------------------e------ecc-cccCCCEEEEEEe-
Q 011978 416 LLLSGSKDSTLKVWDIRT--QKL--------------------------------K------QDL-PGHADEVFAVDWS- 453 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~i~~l~~s- 453 (473)
+|+++ .|+.|++||+.. ++. . ..+ .+|...|++++|+
T Consensus 258 ~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 336 (372)
T 1k8k_C 258 LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 336 (372)
T ss_dssp EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence 88887 899999999987 421 0 223 4899999999966
Q ss_pred eCC---CEEEEEeCCCcEEecc
Q 011978 454 PDG---EKVASGGKDRVLKLWM 472 (473)
Q Consensus 454 ~d~---~~l~s~~~D~~i~~w~ 472 (473)
++| ++|+|++.||.|++|+
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEE
T ss_pred CCCcceeeEEEecCCCceEEEE
Confidence 666 9999999999999996
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=316.57 Aligned_cols=290 Identities=18% Similarity=0.322 Sum_probs=239.5
Q ss_pred cccCCcccEEEEEECCCCCeEE-EEeC---CCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCC---CCeEEEEecCCeE
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLA-SGSG---DTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD---GKHLVSGSKAGEL 174 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~la-t~s~---d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~d---g~~l~s~~~dg~i 174 (473)
.+.+|.+.|.+++|+|++..++ +|+. |+.|++||+.++..... ..+|...|.+++|+|+ +++|++|+.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 4567999999999999997654 5555 99999999998765433 3378999999999998 6999999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEecee-ccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccc----cEEEEE-
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK- 247 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~----~v~~~~- 247 (473)
++||+.+++.....+.+|...|.++.|.+. .+++++..+++++.|+.|++||+..++ .+..+..|.. .+.++.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 999999887344567789999999988763 455677899999999999999999876 5666655544 788888
Q ss_pred ---ecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 248 ---WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 248 ---~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
|++++ .+++++.|+.|++||+++++....
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------------------------------- 205 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----------------------------------------------- 205 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------------
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------------------------------------
Confidence 56666 688899999999999887653211
Q ss_pred ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC---CCcEEEEEECCCcEEEEeCCCCceEEEe--
Q 011978 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVF-- 398 (473)
Q Consensus 324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp---~g~~lasgs~d~~v~lwd~~~~~~~~~~-- 398 (473)
..|...+.+++|+| ++++|++|+.||.|++||+++++....+
T Consensus 206 ---------------------------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 206 ---------------------------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp ---------------------------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred ---------------------------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 12345688999999 9999999999999999999877654444
Q ss_pred ---eCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC-------------------ceeecccccCCCEEEEEEeeC
Q 011978 399 ---RGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQ-------------------KLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 399 ---~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~s~d 455 (473)
.+|...|++++|+|+++ +|++++.||.|++||++.+ +.+..+.+|...|++++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 48999999999999998 8999999999999999753 345677889999999999999
Q ss_pred CCEEE-EEeCCCcEEecc
Q 011978 456 GEKVA-SGGKDRVLKLWM 472 (473)
Q Consensus 456 ~~~l~-s~~~D~~i~~w~ 472 (473)
+++|+ +++.|+.|++|+
T Consensus 333 ~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp STTEEEEEETTSEEEEEE
T ss_pred CCeEEEEecCCCcEEEEE
Confidence 99998 899999999996
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-40 Score=346.70 Aligned_cols=329 Identities=21% Similarity=0.300 Sum_probs=277.6
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|.+.|.+++|+|++++||+++.||.|+|||+.++..+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 34567899999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecC-CC-eEEEe
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTG 257 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~s~ 257 (473)
+++... .+.+|...|.++.|+| ++..+++++.||.|++||+.++ .....+.+|...|.+++|++ ++ .++++
T Consensus 86 ~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 86 TGEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp TCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 887654 4678999999999987 4568999999999999999887 77788889999999999998 55 68899
Q ss_pred ecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
+.||+|++||+.+++....+..+. ..+..+++++. .....+++++
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~~ 205 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITAS 205 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEEC
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEEe
Confidence 999999999998887776665543 66777776652 0134689999
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC-
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR- 415 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~- 415 (473)
.|+.+++||..... ....+.+|...|.+++|+|++++|++++.||.|++||..+++.+..+..|...+.+++|+|+|.
T Consensus 206 ~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 206 DDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 99999999986543 4556678889999999999999999999999999999999999999999999999999999987
Q ss_pred -EEEEEeCCCcEEEEECCCCce----------e---------------------------------ecccccCCCEEEEE
Q 011978 416 -LLLSGSKDSTLKVWDIRTQKL----------K---------------------------------QDLPGHADEVFAVD 451 (473)
Q Consensus 416 -~l~s~s~Dg~i~iwd~~~~~~----------~---------------------------------~~~~~h~~~i~~l~ 451 (473)
++++++ |+.+.+|++..... . ..+..+...+.+++
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (814)
T 3mkq_A 285 NYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLA 363 (814)
T ss_dssp GEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEE
T ss_pred eEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeE
Confidence 355554 66788888754211 1 01122344577889
Q ss_pred EeeCCCEEEEEeCCCcEEecc
Q 011978 452 WSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 452 ~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|||++|++++ |+.+.+|.
T Consensus 364 ~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 364 HSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp ECTTSSEEEEEE-TTEEEEEE
T ss_pred ECCCCCEEEEec-CCEEEEEE
Confidence 999999888888 78888885
No 42
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-43 Score=341.39 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=225.9
Q ss_pred EEEEeCCCeEEEEeCCCCcee----EEEcCCCCCEEEEEECCC------CCeEEEEecCCeEEEeeCCCCccc-------
Q 011978 123 LASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSAD------GKHLVSGSKAGELQCWDPQTGKPS------- 185 (473)
Q Consensus 123 lat~s~d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~d------g~~l~s~~~dg~i~iwd~~~~~~~------- 185 (473)
+|+++.|++|+|||+.++... ..+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 344668899999999876532 235577889999999997 579999999999999999876422
Q ss_pred ---cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe-EEEEecCccccEEEE--EecCCC--eEEEe
Q 011978 186 ---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCV--KWGGDG--VIYTG 257 (473)
Q Consensus 186 ---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~--~l~s~ 257 (473)
...+.+|...|.+++|++. ..+++|+.||+|++||++++. ....+.+|...|.++ .|++++ +|++|
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~------~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSP------TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSS------SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred cCceEEEEcCCCCEEEEEecCC------CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 1135689999999999862 379999999999999998764 345678999999999 567775 68999
Q ss_pred ecCCeEEEEECCCCceeeeeeccCc--eEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+.|++|++||+++++....+.+|.. .|.+++++|+ ...++++
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~------------------------------------~~~l~s~ 373 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ------------------------------------IYSYIYS 373 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT------------------------------------TTEEEEE
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCC------------------------------------cCeEEEe
Confidence 9999999999999887776666543 3666777664 2358899
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-----CccCEEEEEE
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-----HVGPVYQISW 410 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-----h~~~v~~v~~ 410 (473)
+.|+++++||+..... ...+.+|...|++|+|+|+|++|++|+.|++|++||...+ .+..++. +...|.+++|
T Consensus 374 ~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 374 DGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp CSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBC
T ss_pred CCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEecc
Confidence 9999999999876543 3456689999999999999999999999999999998654 2222111 1225789999
Q ss_pred ecCCCEEEEEeCCCcEEEEECC-CCceeecccccCCCEEEEEEeeCCC---EEEEEeCCCcEEecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~~w~ 472 (473)
+|+|..+. .. | ..++|+.. ++.....+.+|...|++|+|+|+++ ++|+|+.||+|+||.
T Consensus 452 sp~g~~~~-~~-~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 452 SIKDDKYR-ID-S-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSSSCEEE-EC-C-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCCeEE-cc-C-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 99998553 22 2 23444433 4566778899999999999999964 999999999999996
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.9e-41 Score=317.40 Aligned_cols=285 Identities=18% Similarity=0.226 Sum_probs=237.4
Q ss_pred cccCCcccEEEEEECCCC-CeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECC-CCCeEEEEecCCeEEEee
Q 011978 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~-~~lat~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd 178 (473)
.+.+|.+.|.+++|+|++ ++||+|+.|+.|+|||+.++.....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 457899999999999999 999999999999999999877666554 6999999999999 789999999999999999
Q ss_pred CCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEE
Q 011978 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY 255 (473)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (473)
+.+..... ....+|...|.++.|+| ++..+++++.|+.|++||+ .++.+..+.+|...|.+++|++++ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 98643221 11234558899999987 4568999999999999999 577888899999999999999987 588
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+++.|+.|++||+++++...
T Consensus 222 s~~~d~~i~iwd~~~~~~~~------------------------------------------------------------ 241 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKN------------------------------------------------------------ 241 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTT------------------------------------------------------------
T ss_pred EEeCCCEEEEEeCCCCCccc------------------------------------------------------------
Confidence 99999999999987632100
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCCceEEEeeCCc------------
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHV------------ 402 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------------ 402 (473)
. .....+|...|.+++|+| ++++|++++.|+.|++||+++++....+.+|.
T Consensus 242 ---------------~-~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (383)
T 3ei3_B 242 ---------------S-YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA 305 (383)
T ss_dssp ---------------C-EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred ---------------c-eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE
Confidence 0 001113567799999999 99999999999999999999887766665543
Q ss_pred -----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc--cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 403 -----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 403 -----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.+..++|+|+|++ +++.||.|++||+.+++.+..+.+ |...+..++|+||+++|++++ |+.|++|+
T Consensus 306 ~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 306 TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 34556778888877 788999999999999998888876 456777789999999999997 99999996
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=309.53 Aligned_cols=245 Identities=21% Similarity=0.301 Sum_probs=204.7
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE----EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~----~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+.. ..+|...|.+++|+|+|++|++|+.|++|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 467789999999985 688999999999999998765433 458999999999999999999999999999999999
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCCC--eEEEe
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYTG 257 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~--~l~s~ 257 (473)
++... .+.+|...|.++.|+|.. ...|++++.|++|++||++++++...+. .|...+.+++|++++ ++++|
T Consensus 159 ~~~~~-~~~~h~~~V~~~~~~~~~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 159 QVVLS-SYRAHAAQVTCVAASPHK----DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp TEEEE-EECCCSSCEEEEEECSSC----TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred CcEEE-EEcCcCCceEEEEecCCC----CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 87654 578999999999998742 2478999999999999999998887664 456678999998754 57889
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|++|++||+++++.+..+
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~------------------------------------------------------------ 253 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSS------------------------------------------------------------ 253 (344)
T ss_dssp ETTSEEEEEESCC--CCEEE------------------------------------------------------------
T ss_pred ccCCcEEEEECCCCcEEEEE------------------------------------------------------------
Confidence 99999999999876654433
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC-
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR- 415 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~- 415 (473)
.+|...|++++|+|++ ++||+|+.|++|+|||..+++++ .+.+|.+.|++++|+|+++
T Consensus 254 -------------------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 254 -------------------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp -------------------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTT
T ss_pred -------------------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCe
Confidence 3455678899999998 58999999999999999988765 5689999999999999986
Q ss_pred EEEEEeCCCcEEEEECCCCce
Q 011978 416 LLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
+|+++|.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 577999999999999986543
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-40 Score=304.12 Aligned_cols=246 Identities=20% Similarity=0.339 Sum_probs=217.5
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
...+.+|.+.|.+++|+|++++|++++.||+|++||+.++.... .+..|...|.++.|.| ++..+++|+.|++|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI 79 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE-EeeccCCcEEEEEEeC-----CCCEEEEECCCCEE
Confidence 34577899999999999999999999999999999999887543 4678899999999987 45689999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
++||+.+++++..+.+|...|.+++|++++ .+++|+.|++|++||++++....
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-------------------------- 133 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-------------------------- 133 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--------------------------
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--------------------------
Confidence 999999999999999999999999999987 68899999999999987643211
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEEC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF 380 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~ 380 (473)
..+.+|...|.+++|+| ++.+|++|+.
T Consensus 134 ----------------------------------------------------~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 134 ----------------------------------------------------QTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ----------------------------------------------------EEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred ----------------------------------------------------hhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 12335677899999999 6899999999
Q ss_pred CCcEEEEeCCCCceEEEee-CCccCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978 381 DKSIKLWNGTTGKFVAVFR-GHVGPVYQISWSA--DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp--~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
|++|++||+.++.....+. +|...+..+.|+| ++.+|++|+.|++|++||+++++....+.+|...|.+++|+|+++
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence 9999999998877655554 5668899999987 778999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEecc
Q 011978 458 KVASGGKDRVLKLWM 472 (473)
Q Consensus 458 ~l~s~~~D~~i~~w~ 472 (473)
+|++|+.|++|++|+
T Consensus 242 ~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 242 IIISGSEDGTLKIWN 256 (304)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEcCCCeEEEEE
Confidence 999999999999996
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-40 Score=302.20 Aligned_cols=258 Identities=23% Similarity=0.393 Sum_probs=200.0
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEee
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD 178 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iwd 178 (473)
.+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+. +.+..+.+|..+|.+++|+++ +++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 46789999999999999999999999999999999753 566788999999999999864 88999999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eEE
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VIY 255 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~ 255 (473)
+.+++.. .+..+.+|...|.+++|+++ + .|+
T Consensus 84 ~~~~~~~----------------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 84 EENGRWS----------------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp BSSSCBC----------------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred cCCCceE----------------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEE
Confidence 8754311 01123467778899999885 4 688
Q ss_pred EeecCCeEEEEECCCCce--eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 256 TGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+++.|++|++||++++.. ...+.+|...|.+++++|.....
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~------------------------------------- 160 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE------------------------------------- 160 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc-------------------------------------
Confidence 999999999999876532 22334444444444443321000
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc----eEEEeeCCccCEEEEE
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIS 409 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~----~~~~~~~h~~~v~~v~ 409 (473)
++ .+ ...+++++||+|+.|++|++||+++++ ....+.+|.+.|.+++
T Consensus 161 ----~~------------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 161 ----DG------------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp --------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred ----cc------------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 00 00 001236899999999999999998765 5678899999999999
Q ss_pred EecCC---CEEEEEeCCCcEEEEECCCCc---eeecc--cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADS---RLLLSGSKDSTLKVWDIRTQK---LKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g---~~l~s~s~Dg~i~iwd~~~~~---~~~~~--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|++ ++||+++.|++|+|||++... ....+ .+|...|++++|+|+|++||+++.|++|+||.
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 99985 899999999999999997642 12223 56788999999999999999999999999996
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-41 Score=316.90 Aligned_cols=312 Identities=19% Similarity=0.282 Sum_probs=250.2
Q ss_pred cccCCcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCEEEEEECCC----CCeEEEEe
Q 011978 103 TIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSAD----GKHLVSGS 169 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~d----g~~l~s~~ 169 (473)
...+|.+.|.+++|+|+ ...+++++.++.|++||+.++..+..+. .|...|.+++|+|+ |++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34689999999999994 4556667777799999998776654443 36688999999999 67999999
Q ss_pred cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe---cCccccEEEE
Q 011978 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCV 246 (473)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~ 246 (473)
.||.|++||+.+++... .+.+|...|.++.|+|. ++..+++++.||.|++||+++++.+..+ .+|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 99999999999887654 46789999999999872 3468999999999999999999998888 7899999999
Q ss_pred EecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 247 ~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
+|++++ .+++++.|+.|++||+++++....+..+ +.+.++.
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~-------------------------------- 209 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YDYNPNK-------------------------------- 209 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HTCCGGG--------------------------------
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCcccccccee------EEecCCC--------------------------------
Confidence 999987 6889999999999999887654433220 0000000
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce-----------
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----------- 394 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----------- 394 (473)
..+.... ... .........+|...|.+++|+ +++|++++.|+.|++||+.+++.
T Consensus 210 ----~~~~~~~----~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 210 ----TNRPFIS----QKI-----HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp ----CSSCCCC----EEE-----CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ----Ccccccc----eee-----ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 0000000 000 011223445688899999998 78999999999999999887643
Q ss_pred ---EEEeeCCccCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCce----eeccccc--CCCEEEEEEeeCCCEEEEEe
Q 011978 395 ---VAVFRGHVGPVYQISWSAD--SRLLLSGSKDSTLKVWDIRTQKL----KQDLPGH--ADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 395 ---~~~~~~h~~~v~~v~~sp~--g~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~h--~~~i~~l~~s~d~~~l~s~~ 463 (473)
+..+.+|...|++++|+|+ +++|++++.||.|++||+.+++. ...+.+| ...|++++|+|++++|++++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 7788899999999999999 99999999999999999998753 3367777 68999999999999999999
Q ss_pred CCCcEEecc
Q 011978 464 KDRVLKLWM 472 (473)
Q Consensus 464 ~D~~i~~w~ 472 (473)
.|+.|++|+
T Consensus 355 ~dg~i~iwd 363 (366)
T 3k26_A 355 DDASIWRWD 363 (366)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999996
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-40 Score=311.61 Aligned_cols=288 Identities=12% Similarity=0.110 Sum_probs=221.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCC-------eEEEEeCCCCce----------eEEEcCCCCCEEEEEECCCCCeEEEEecC
Q 011978 109 EAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTP----------MFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~-------~i~iwd~~~~~~----------~~~~~~~~~~v~~l~~s~dg~~l~s~~~d 171 (473)
-+|++++|+||+++|++|++|. .|++|++..... ...+.+|+..|.+++++ ++.+++|..+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998643 599999865431 12456888889888764 5677777654
Q ss_pred CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE----EEE-----ecCcccc
Q 011978 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VIC-----LSGHTLA 242 (473)
Q Consensus 172 g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~----~~~-----~~~h~~~ 242 (473)
+..++ ++++.|+.+++|++..... ... ...+...
T Consensus 93 ~~~~l-------------------------------------~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T 4h5i_A 93 NSTKI-------------------------------------TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDY 135 (365)
T ss_dssp CHHHH-------------------------------------HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCC
T ss_pred CccEE-------------------------------------EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccC
Confidence 43333 3344455666666543211 111 1234456
Q ss_pred EEEEEecCCCe-EE--EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 243 VTCVKWGGDGV-IY--TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 243 v~~~~~~~~~~-l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
+.+++|+|||. ++ +++.|++|++||+.+++.+..+. |...|.+++++|+.
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-------------------------- 188 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-------------------------- 188 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS--------------------------
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC--------------------------
Confidence 88999999984 43 55689999999999999888876 56679999998763
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC----cEEEEeCCCCce-
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTGKF- 394 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~----~v~lwd~~~~~~- 394 (473)
..+++++.++.+.+|.............+|...|.+++|+|+++++++++.|+ .+++||...+..
T Consensus 189 ----------~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 189 ----------KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS 258 (365)
T ss_dssp ----------SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred ----------ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence 35777776665555543322222334567888999999999999999999887 688899876643
Q ss_pred ---EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeec-ccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 395 ---VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 395 ---~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
...+.+|..+|++++|||||++||+|+.|++|+|||+.+++.+.. +.+|...|++|+|||||++|||||.|++|+|
T Consensus 259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 346778999999999999999999999999999999999998876 5899999999999999999999999999999
Q ss_pred cc
Q 011978 471 WM 472 (473)
Q Consensus 471 w~ 472 (473)
|.
T Consensus 339 w~ 340 (365)
T 4h5i_A 339 IK 340 (365)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-40 Score=320.33 Aligned_cols=288 Identities=19% Similarity=0.271 Sum_probs=229.3
Q ss_pred ccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEe
Q 011978 102 ATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCW 177 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iw 177 (473)
....+|...|+||+|+| ++.+||+|+.||+|+|||+.++... ..+.+|.+.|.+|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 4678999999999999999876543 34568999999999998 68899999999999999
Q ss_pred eCCCCccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eE
Q 011978 178 DPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VI 254 (473)
Q Consensus 178 d~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l 254 (473)
|++++..... ....+...+.++.|+| ++..+++|+.||.|++||++. +.+..+.+|...|.+++|++++ ++
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEE
Confidence 9986543211 1223344566777766 567899999999999999864 5566788999999999999875 57
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++|+.|++|++||+++++....
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~---------------------------------------------------------- 288 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKAS---------------------------------------------------------- 288 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSC----------------------------------------------------------
T ss_pred EEecCcceeeEEecccccccce----------------------------------------------------------
Confidence 7899999999999876532211
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc------CEEEE
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG------PVYQI 408 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~------~v~~v 408 (473)
.....+|...|++++|+|+|++|++|+.|+.|++||+.+++....+..|.. .+...
T Consensus 289 ------------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 289 ------------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp ------------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred ------------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 011235777899999999999999999999999999999988877766542 23455
Q ss_pred EEecCCCEEEEEe------------CCCcEEEEECCCCceeecc-cccCCCEEEE-EEeeCCCEEEEEeCCCcEEecc
Q 011978 409 SWSADSRLLLSGS------------KDSTLKVWDIRTQKLKQDL-PGHADEVFAV-DWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 409 ~~sp~g~~l~s~s------------~Dg~i~iwd~~~~~~~~~~-~~h~~~i~~l-~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|+|++.++++++ .++.|++||+.+++.+..+ .+|...|.++ +|+|||++|++|+ |++|+||+
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS 427 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence 6777777666654 3457999999999887665 4677888887 6999999999876 78999997
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-41 Score=318.29 Aligned_cols=298 Identities=14% Similarity=0.222 Sum_probs=229.6
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
.|.++|.+++|+|++++||+|+.|+.|++||+.++ .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 36778999999999999999999999999999987 6667788999999999999999999999999999999998876
Q ss_pred --cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe---EEEEecC-ccccEEEEEecCCC-eEEE
Q 011978 184 --PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 184 --~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~-~l~s 256 (473)
.....+.+|...|.++.|+| ++..+++++.|+.|++||++.++ +...+.+ |...|.+++|++++ .+++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred ceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 12234678999999999987 45689999999999999999877 3667777 99999999999987 6889
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
++.|++|++||+..+.........
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~-------------------------------------------------------- 187 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEAS-------------------------------------------------------- 187 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSC--------------------------------------------------------
T ss_pred EeCCCEEEEEEEEecccCCCcccc--------------------------------------------------------
Confidence 999999999998754321110000
Q ss_pred CCceEEEEeCCC-CCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce----EEEeeCCccCEEEEEEe
Q 011978 337 DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQISWS 411 (473)
Q Consensus 337 ~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~s 411 (473)
.|.... .......+ +|...|.+++|+|++++|++|+.|+.|++||+.+++. +..+.+|..+|.+++|+
T Consensus 188 ------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 260 (377)
T 3dwl_C 188 ------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA 260 (377)
T ss_dssp ------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred ------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence 000000 00011223 7888999999999999999999999999999999887 78889999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCc--ee--------------------------------------------------ec
Q 011978 412 ADSRLLLSGSKDSTLKVWDIRTQK--LK--------------------------------------------------QD 439 (473)
Q Consensus 412 p~g~~l~s~s~Dg~i~iwd~~~~~--~~--------------------------------------------------~~ 439 (473)
|++++|++++.|+.+ +|+..... .. ..
T Consensus 261 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 339 (377)
T 3dwl_C 261 NESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL 339 (377)
T ss_dssp ETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCC
T ss_pred CCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 999999999876655 66654211 00 00
Q ss_pred ccccCCCEEEEEEeeCC-C---EEEEEeCCCcEEecc
Q 011978 440 LPGHADEVFAVDWSPDG-E---KVASGGKDRVLKLWM 472 (473)
Q Consensus 440 ~~~h~~~i~~l~~s~d~-~---~l~s~~~D~~i~~w~ 472 (473)
...|...|+++.+.++. . .|+|+|.||.|++|+
T Consensus 340 ~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 340 PTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp SSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred CccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 12388999999976554 3 599999999999997
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-38 Score=296.04 Aligned_cols=282 Identities=22% Similarity=0.404 Sum_probs=244.8
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce---eEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~---~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
.+|...|.+++|+|++++|++++ ||.|++||+.++.. ...+. .|...|.+++|+|++++|++++.||.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 47999999999999999999998 99999999987542 23333 78999999999999999999999999999999
Q ss_pred CCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978 180 QTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 180 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~ 257 (473)
.+++. ....+..|...+.++.|+| ++..+++++.|+.|++||+++++.+..+.+|...|.+++|++++ .++++
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 88763 2234677888999999987 45689999999999999999999999999999999999999987 68899
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|+.|++||+++++.+..+. +...+.+++++++ ...+++++.
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~~ 244 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGME 244 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred ecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEcC
Confidence 999999999999998877664 5566788877764 236889999
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
++.+++||..... ......|...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|
T Consensus 245 ~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 245 SSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321 (337)
T ss_dssp TSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEE
T ss_pred CCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEE
Confidence 9999999987543 4567788999999999999999999999999999999999887554 478899999999999999
Q ss_pred EEEeCCCcEEEEECC
Q 011978 418 LSGSKDSTLKVWDIR 432 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~ 432 (473)
++++.||.|++||+.
T Consensus 322 ~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 322 VTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEecCCCeEEEEEEe
Confidence 999999999999963
No 52
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.8e-39 Score=298.68 Aligned_cols=246 Identities=24% Similarity=0.432 Sum_probs=217.6
Q ss_pred eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 142 ~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
....+.+|...|.+++|+||+++|++|+.||+|++||..+++... .+..|...|.++.|+| ++..+++++.|+.
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~ 120 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAP-----SGNYVACGGLDNI 120 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTCE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECC-----CCCEEEEEeCCCe
Confidence 345678999999999999999999999999999999998877543 4567889999999987 4578999999999
Q ss_pred EEEEECCCC----eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978 222 ARIWDVSLR----KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 222 i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (473)
+++||+.++ .....+.+|...|.++.|.+++.+++++.|++|++||+.+++.+..+
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~-------------------- 180 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE--------------------
Confidence 999999865 45667889999999999999999999999999999999877654332
Q ss_pred ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
.+|...|.+++|+|++++|++
T Consensus 181 -----------------------------------------------------------~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 181 -----------------------------------------------------------TGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp -----------------------------------------------------------CCCSSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------cCCCCceEEEEECCCCCEEEE
Confidence 245567889999999999999
Q ss_pred EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc--ccCCCEEEEEEeeC
Q 011978 378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPD 455 (473)
Q Consensus 378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~s~d 455 (473)
|+.|++|++||+++++++..+.+|...|++++|+|++++|++|+.||+|++||++.++....+. .+...|.+++|+|+
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999887665543 23357999999999
Q ss_pred CCEEEEEeCCCcEEecc
Q 011978 456 GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 456 ~~~l~s~~~D~~i~~w~ 472 (473)
|++|++|+.|+.|++|+
T Consensus 282 g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SSEEEEEETTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEE
Confidence 99999999999999996
No 53
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-39 Score=304.06 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=239.3
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP 179 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~ 179 (473)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++. +.....+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 35799999999999999999999999999999998776 3444568999999999999999 9999999999999999
Q ss_pred -CCCccccccCCC--cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC---------CeEEEEecCccccEEEEE
Q 011978 180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK 247 (473)
Q Consensus 180 -~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~ 247 (473)
.+++. ..+.+ |...|.++.|.| ...+++++.|+.|++||+++ ++++..+. |...|.+++
T Consensus 87 ~~~~~~--~~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 87 IGSPSF--QALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp SSSSSE--EECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred ccCCce--EeccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 87765 34667 999999999987 25899999999999999987 66555555 888999999
Q ss_pred ecCCCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978 248 WGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (473)
Q Consensus 248 ~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
|++++ +++++.|+.|++||+++ +....
T Consensus 158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--------------------------------------------------- 185 (342)
T 1yfq_A 158 TNSSR-LIVGMNNSQVQWFRLPLCEDDNG--------------------------------------------------- 185 (342)
T ss_dssp ECSSE-EEEEESTTEEEEEESSCCTTCCC---------------------------------------------------
T ss_pred ecCCc-EEEEeCCCeEEEEECCccccccc---------------------------------------------------
Confidence 99887 88999999999999876 43210
Q ss_pred CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEEEeCCCC------ceEEEee
Q 011978 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------KFVAVFR 399 (473)
Q Consensus 327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~lwd~~~~------~~~~~~~ 399 (473)
......|...+.+++|+| +++++++|+.||.|++|++... +....++
T Consensus 186 --------------------------~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 186 --------------------------TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp --------------------------EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred --------------------------eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 011123455689999999 9999999999999999999877 7788888
Q ss_pred CCcc---------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 400 GHVG---------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 400 ~h~~---------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
.|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.|+.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 8865 9999999999999999999999999999999999999998 99999999 99999999999998
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=304.29 Aligned_cols=330 Identities=18% Similarity=0.294 Sum_probs=238.5
Q ss_pred ccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEE-------------cCCCCCEEEEEECC-CCCe
Q 011978 100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKC-------------TGHKNWVLCIAWSA-DGKH 164 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~l~~s~-dg~~ 164 (473)
....+.+|.+.|.+++|+| ++++||+|+.||.|++||+.++...... .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3445678999999999999 9999999999999999999876543322 25999999999999 7789
Q ss_pred EEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEE
Q 011978 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (473)
Q Consensus 165 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 244 (473)
|++++.||.|++||+.+++.... ..+...+..+.+.|.. .....+++++.|+.|++||+.+++.+..+.+|...|.
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred EEEEeCCCeEEEeeCCCCcccee--ccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 99999999999999998875432 2366778888888743 3445899999999999999999999999999999999
Q ss_pred EEEecCCC--eEEEeecCCeEEEEECCCCc-eeeee---------------eccCceEEEEEecccceeeeccccCCCcc
Q 011978 245 CVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 245 ~~~~~~~~--~l~s~~~d~~i~~wd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
+++|++++ .+++++.||.|++||++++. .+..+ ..|...|.+++++++
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------- 256 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-------------- 256 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT--------------
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC--------------
Confidence 99999987 48899999999999998765 33333 456777888877764
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee----cCcccceeEEEECCCCcEEEEEECCC
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
...+++++.|+.+++||+.......... ......+........+..+++++.|+
T Consensus 257 ----------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 257 ----------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp ----------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred ----------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 3468999999999999987654322111 01111122222334456677778899
Q ss_pred cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee-CCCEEEE
Q 011978 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVAS 461 (473)
Q Consensus 383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s 461 (473)
.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+.....+.. ...+.+ +...+.+
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 391 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSS 391 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecc
Confidence 999999999999999999999999999999999999999999999999998876654433221 122232 3345567
Q ss_pred EeCCCcEEecc
Q 011978 462 GGKDRVLKLWM 472 (473)
Q Consensus 462 ~~~D~~i~~w~ 472 (473)
.+.|+.+++|.
T Consensus 392 ~~~~~~~~~W~ 402 (408)
T 4a11_B 392 SDEEGGTSAWS 402 (408)
T ss_dssp -----------
T ss_pred cCccCceeecC
Confidence 88899999996
No 55
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-38 Score=305.10 Aligned_cols=276 Identities=29% Similarity=0.526 Sum_probs=234.3
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
.+.|+||++ ..||+|. |++|+|||..+++....+ .+|...|++|+|+|||++|++|+.||.|++||+.+++... .
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-E
Confidence 567999976 4777765 899999999998766544 5788899999999999999999999999999999987654 4
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w 266 (473)
+.+|...+.++.+.+ ..+++|+.|+.+++||.... ..+..+.+|...+.++.|.+++ .+++++.|+.+++|
T Consensus 185 ~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 185 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp ECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 678999999988754 57999999999999998864 4566788999999999999887 58899999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
+..+++...
T Consensus 258 ~~~~~~~~~----------------------------------------------------------------------- 266 (420)
T 4gga_A 258 PSAPGEGGW----------------------------------------------------------------------- 266 (420)
T ss_dssp ESSCCSSCS-----------------------------------------------------------------------
T ss_pred eeccccccc-----------------------------------------------------------------------
Confidence 987653211
Q ss_pred CCCCCCeeeecCcccceeEEEECCCC-cEEEEE--ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe--
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-- 421 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasg--s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-- 421 (473)
........|...|.+++|+|++ .+++++ +.|++|++||+.++++...+..| ..+.++.|+|+++.+++++
T Consensus 267 ----~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 267 ----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp ----CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred ----eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence 1112234566789999999965 455554 57999999999999999888765 4789999999999988765
Q ss_pred CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|+.|+|||+.+++.+.++.+|.+.|++++|+|||++|+||+.|++|+||+
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 799999999999999999999999999999999999999999999999996
No 56
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-38 Score=294.49 Aligned_cols=251 Identities=25% Similarity=0.460 Sum_probs=216.1
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45678999999999999999999999999999999999999988999999999999999999999999999999999997
Q ss_pred CCccccccCCCcCCcEEEEEeceeccC-CCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLN-APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 258 (473)
... . ..+.+|...|.++.|.|.... .+...+++++.|+.|++||++..+....+.+|...|.+++|++++ .|++|+
T Consensus 138 ~~~-~-~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 138 GQC-L-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp SCE-E-EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred CCe-E-EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence 543 2 346789999999999885432 234579999999999999999999999999999999999999988 588999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|++|++||+.+++.+..+..
T Consensus 216 ~dg~i~iwd~~~~~~~~~~~~----------------------------------------------------------- 236 (319)
T 3frx_A 216 KDGEIMLWNLAAKKAMYTLSA----------------------------------------------------------- 236 (319)
T ss_dssp TTCEEEEEETTTTEEEEEEEC-----------------------------------------------------------
T ss_pred CCCeEEEEECCCCcEEEEecC-----------------------------------------------------------
Confidence 999999999988765443221
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee--------CCccCEEEEEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--------GHVGPVYQISW 410 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~--------~h~~~v~~v~~ 410 (473)
...|.+++|+|++.+|++++.+ .+++|++..+..+..+. .|...+.+++|
T Consensus 237 ---------------------~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 237 ---------------------QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp ---------------------CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred ---------------------CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 1347889999999999998865 59999998877766654 34567999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
+|||++|++|+.||.|++||+.+.
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999998753
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-39 Score=308.83 Aligned_cols=312 Identities=20% Similarity=0.339 Sum_probs=243.5
Q ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeC----CCCcc------cc---ccCCC-----
Q 011978 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP----QTGKP------SG---NPLSG----- 191 (473)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~----~~~~~------~~---~~~~~----- 191 (473)
.+.+|++...........|...|.+++|+|+|+ +|++|+.||.|++|++ .+++. .. ..+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 456788876665555556778999999999999 9999999999999999 87762 11 12222
Q ss_pred -cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECC
Q 011978 192 -HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (473)
Q Consensus 192 -~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~ 269 (473)
|...|.++.|+| ++.++++++.||.|++|| .+++.+..+.+|...|.+++|++++ .+++++.|+.|++||+.
T Consensus 106 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 106 KTTNQVTCLAWSH-----DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp --CBCEEEEEECT-----TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 677999999987 457899999999999999 6778888899999999999999987 58899999999999999
Q ss_pred CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
+++.+..+..+......+..... ...+.. ...+.-.....+++++.|+.+++||....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------------~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 237 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENH--------SGDGSL--------------GVDVEWVDDDKFVIPGPKGAIFVYQITEK 237 (425)
T ss_dssp TTEEEEEECCC-----------------------CCC--------------BSCCEEEETTEEEEECGGGCEEEEETTCS
T ss_pred CCcEEEEeeccccCccceeeccc--------cCCcce--------------eeEEEEcCCCEEEEEcCCCeEEEEEcCCC
Confidence 99888877665443111100000 000000 00000011346889999999999998754
Q ss_pred CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 350 ~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw 429 (473)
.....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++|
T Consensus 238 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 238 -TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp -SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred -ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 3445667889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 430 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 430 d~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 316 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 9999999888889999999999999999999999999999996
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.7e-40 Score=301.50 Aligned_cols=262 Identities=23% Similarity=0.344 Sum_probs=196.0
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEEEee
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~iwd 178 (473)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 457899999999999999999999999999999998764 3567889999999999986 488999999999999998
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eEE
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VIY 255 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~ 255 (473)
+++++. .....+.+|...|.+++|+++ + .|+
T Consensus 88 ~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~la 121 (316)
T 3bg1_A 88 EENGTW----------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILA 121 (316)
T ss_dssp CSSSCC----------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEE
T ss_pred CCCCcc----------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEE
Confidence 765421 112234578888999999886 4 689
Q ss_pred EeecCCeEEEEECCCCce---eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 256 TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+|+.|++|++||++.+.. ...+.+|...+.++.++++... ..+
T Consensus 122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----------------------------------~~~ 167 (316)
T 3bg1_A 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP----------------------------------GSL 167 (316)
T ss_dssp EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-------------------------------------
T ss_pred EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC----------------------------------ccc
Confidence 999999999999876532 2223344444444444332100 000
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC---ceEEEeeCCccCEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~~v~~v~ 409 (473)
+ +.. .+ ...+++++|++|+.|++|++||.+.+ +++..+.+|.+.|.+++
T Consensus 168 ~-----------~~~---------~~--------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 168 I-----------DHP---------SG--------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp --------------C---------CS--------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred c-----------ccc---------cc--------cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 0 000 00 00123678999999999999999755 46778899999999999
Q ss_pred EecCC----CEEEEEeCCCcEEEEECCCCc----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADS----RLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g----~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|++ ++||+++.|++|++||+.+.. ....+.+|...|++++|+|++++||+++.|++|+||.
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 99987 899999999999999997621 1234567889999999999999999999999999996
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=313.40 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=247.6
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC----CceeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~ 179 (473)
.+|...|.+++|+|++++|++|+.|+.|++||+.+ ......+.+|...|.+++|+|+ +++|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 36899999999999999999999999999999987 3467778899999999999998 899999999999999999
Q ss_pred CCCc------ccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc------cccEEE
Q 011978 180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVTC 245 (473)
Q Consensus 180 ~~~~------~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v~~ 245 (473)
.+++ ... ....+|...|.++.|+|. ....+++++.|+.|++||+++++.+..+..| ...|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS----LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS----CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCC----CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 8876 221 124678899999999873 1468999999999999999999998888776 788999
Q ss_pred EEecCCC--eEEEeecCC---eEEEEECCCC-ceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 246 VKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 246 ~~~~~~~--~l~s~~~d~---~i~~wd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
++|++++ .+++++.|+ .|++||++++ ..+..+. +|...|.++++++.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------------------- 273 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ-------------------------- 273 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS--------------------------
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC--------------------------
Confidence 9999986 688999998 9999999986 5677777 89999999998762
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEE
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAV 397 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~ 397 (473)
....+++++.|+.+++||+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....
T Consensus 274 ---------~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 274 ---------DEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp ---------CSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred ---------CCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 1346899999999999998654 4456677899999999999999 8999999999999999987653221
Q ss_pred ee-----------------------------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 398 FR-----------------------------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 398 ~~-----------------------------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
.. .|..++.+++|+|||++|++++.|++|+||++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 11 15677889999999999999999999999998763
No 60
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-38 Score=296.09 Aligned_cols=273 Identities=22% Similarity=0.363 Sum_probs=230.0
Q ss_pred CcccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC----
Q 011978 77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---- 140 (473)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~---- 140 (473)
+...+..+.+.|.. ..+++.. ......+..|...|.+++|+|+|..||+|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 44556677776643 3344432 3344566789999999999999999999999999999998643
Q ss_pred --ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978 141 --TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (473)
Q Consensus 141 --~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~ 218 (473)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.++.|.|. .++..|++|+.
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~---~~g~~l~sgs~ 218 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPS---ETGNTFVSGGC 218 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCC---SSCCEEEEEET
T ss_pred ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeC---CCCCEEEEEeC
Confidence 2345567899999999999999999999999999999999887543 46789999999998763 23568999999
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeee
Q 011978 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 219 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (473)
||+|++||+++++++..+.+|...|.+++|+|++ .+++|+.|++|++||+++++.+..+..+
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~----------------- 281 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE----------------- 281 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----------------
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----------------
Confidence 9999999999999999999999999999999987 6889999999999999876543221100
Q ss_pred ccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE
Q 011978 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 377 (473)
.+...+.+++|+|+|++|++
T Consensus 282 ------------------------------------------------------------~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 282 ------------------------------------------------------------SIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ------------------------------------------------------------TCCSCEEEEEECTTSSEEEE
T ss_pred ------------------------------------------------------------CcccceeEEEEeCCCCEEEE
Confidence 11234778999999999999
Q ss_pred EECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011978 378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWD 430 (473)
Q Consensus 378 gs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd 430 (473)
|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999999999999996
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=313.37 Aligned_cols=291 Identities=15% Similarity=0.320 Sum_probs=233.3
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCC------------CCEEEEEECCCC
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG 162 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~l~~s~dg 162 (473)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.++. ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478899999999999999999999999999998766 366778998 889999999998
Q ss_pred --CeEEEEecCCeEEEeeCCCCccc---------------------------------------cccCCCcCCcEEEEEe
Q 011978 163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW 201 (473)
Q Consensus 163 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~i~~ 201 (473)
.+|++++.|+.|++||+.++... .....+|...|.++.|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764321 0124679999999999
Q ss_pred ceeccCCCCceEEEeeCCCcEEEEECCC-CeEEE-------EecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCC
Q 011978 202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG 271 (473)
Q Consensus 202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~ 271 (473)
+| ++..+++| .|+.|++||+.. ++++. .+.+|...|.+++|++++ .+++|+.|+.|++||++++
T Consensus 186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 87 45688888 899999999984 44444 256899999999999986 6899999999999999887
Q ss_pred ce----eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 272 KL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 272 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
+. +..+..|...
T Consensus 260 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 275 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDP---------------------------------------------------------------- 275 (447)
T ss_dssp SSSCTTCEEECCC-------------------------------------------------------------------
T ss_pred ccccceeeEeccCCCc----------------------------------------------------------------
Confidence 65 3333322110
Q ss_pred CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC-CceEEEeeCCccC---------------EEEEEEe
Q 011978 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGP---------------VYQISWS 411 (473)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~---------------v~~v~~s 411 (473)
.....+.+|...|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|... +..++|+
T Consensus 276 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s 351 (447)
T 3dw8_B 276 ---SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred ---cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence 001123345668999999999999999999 9999999997 8888888888642 3349999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeccc---------------------------------ccCCCEEEEEEeeCCCE
Q 011978 412 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLP---------------------------------GHADEVFAVDWSPDGEK 458 (473)
Q Consensus 412 p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~i~~l~~s~d~~~ 458 (473)
|++++|++|+.||.|++||+.+++... +. .+...|..++|+|++++
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 430 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENI 430 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCE
Confidence 999999999999999999998876542 11 23457889999999999
Q ss_pred EEEEeCCCcEEecc
Q 011978 459 VASGGKDRVLKLWM 472 (473)
Q Consensus 459 l~s~~~D~~i~~w~ 472 (473)
||+++.|+ +.+|.
T Consensus 431 la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 431 IAVATTNN-LYIFQ 443 (447)
T ss_dssp EEEECSSC-EEEEE
T ss_pred EEEEecce-eeeec
Confidence 99999887 56664
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-38 Score=303.34 Aligned_cols=279 Identities=24% Similarity=0.462 Sum_probs=236.3
Q ss_pred ccCCcccEE--EEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 104 IAGHTEAVL--SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 104 ~~gh~~~V~--~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
..+|.+.+. +++|+ +..+++++.|+.|++||+.++.....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 346766644 45555 46688899999999999999887666554 88999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 258 (473)
+++... .+.+|...|.++.|.+ ..+++++.||.|++||++ ....+..+.+|...|.+++|++++ .+++|+
T Consensus 165 ~~~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 165 SQTKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp TCCEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCeEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 887554 4568999999999843 589999999999999998 567788889999999999999987 688999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|+.|++||+++++.+..+
T Consensus 237 ~d~~v~iwd~~~~~~~~~~------------------------------------------------------------- 255 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTK------------------------------------------------------------- 255 (401)
T ss_dssp TTSCEEEEETTCSSEEEEE-------------------------------------------------------------
T ss_pred CCCeEEEccCCCCCccEEe-------------------------------------------------------------
Confidence 9999999999875543322
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEE--CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs--~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
.+|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. |...|.+++|+|+++
T Consensus 256 ------------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 256 ------------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp ------------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred ------------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 2345678899999976 5666665 79999999999999988886 567899999999999
Q ss_pred EEEEE--eCCCcEEEEECCCCcee--ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 416 LLLSG--SKDSTLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 416 ~l~s~--s~Dg~i~iwd~~~~~~~--~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|+++ +.||.|++||+.+++.. ..+.+|...|.+++|+|||++|++++.|+.|++|+
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99995 48999999999886543 45778999999999999999999999999999996
No 63
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.7e-39 Score=301.32 Aligned_cols=247 Identities=18% Similarity=0.269 Sum_probs=201.8
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee----EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~----~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
....+|...|.+++|+|+++ +++++.||+|+|||+.+++.. ....+|...|.+++|+|+|++|++|+.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34467999999999999986 556788999999999876543 3445899999999999999999999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC--e
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG--V 253 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~--~ 253 (473)
|+++++... .+.+|...|.++.|.|.. ...+++++.|++|++||+++++....+ ..|...+.+++|+|++ +
T Consensus 167 d~~~~~~~~-~~~~h~~~v~~v~~s~~~----~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 167 DLSQKAVLK-SYNAHSSEVNCVAACPGK----DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp ETTTTEEEE-EECCCSSCEEEEEECTTC----SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred ECCCCcEEE-EEcCCCCCEEEEEEccCC----CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence 999887554 467899999999997732 247899999999999999988766544 4567789999999864 5
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+++|+.|+.|++||+++++.+..+
T Consensus 242 la~g~~d~~i~~wd~~~~~~~~~~-------------------------------------------------------- 265 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDSAQTS-------------------------------------------------------- 265 (357)
T ss_dssp EEEEESSSCEEEEESSCGGGCEEE--------------------------------------------------------
T ss_pred EEEeecccceeEEECCCCcEeEEE--------------------------------------------------------
Confidence 788999999999999876554332
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA 412 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp 412 (473)
.+|...|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+|
T Consensus 266 -----------------------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 266 -----------------------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp -----------------------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred -----------------------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 2345678899999987 68999999999999999999887665 7999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCC
Q 011978 413 -DSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 413 -~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
|+++|+++|.||+|++||+.+.
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 8999999999999999999753
No 64
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=286.52 Aligned_cols=277 Identities=28% Similarity=0.488 Sum_probs=229.9
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
.++|+||+++ .||+| .|++|+|||+.+++.+..+ .+|...|.+++|+|++++|++|+.||+|++||+++++... .
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N 104 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence 4679999986 67765 5999999999999876654 4788899999999999999999999999999999987654 4
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~w 266 (473)
+.+|...+..+.+.+ ..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.|++|++|
T Consensus 105 ~~~h~~~~~~~~~~~-------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EECCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecCccceEEEeecCC-------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 678888888776543 57899999999999998865 4566788999999999999877 68899999999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
|+++++.....
T Consensus 178 d~~~~~~~~~~--------------------------------------------------------------------- 188 (318)
T 4ggc_A 178 PSAPGEGGWVP--------------------------------------------------------------------- 188 (318)
T ss_dssp ESSCBTTBSCC---------------------------------------------------------------------
T ss_pred ECCCCcccccc---------------------------------------------------------------------
Confidence 99876432110
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcE---EEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe--
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQW---VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-- 421 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~---lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-- 421 (473)
......+...|.+++++|++.. +++++.+++|++||........... +...+..+.|+|++..+++++
T Consensus 189 ------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 189 ------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp ------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred ------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence 1112234456788888886653 3466788999999999887766554 667899999999999887765
Q ss_pred CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 422 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
.|+.|++||+.+++.+.++.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 7999999999999999999999999999999999999999999999999973
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=294.78 Aligned_cols=250 Identities=25% Similarity=0.476 Sum_probs=211.4
Q ss_pred eeEEEcCCCC-CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc--cccCCCcCCcEEEEEeceeccCCCCceEEEeeC
Q 011978 142 PMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (473)
Q Consensus 142 ~~~~~~~~~~-~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~ 218 (473)
.+..+.+|.. .|.+++|+|+|++|++|+.|++|++||..++... .....+|...|.+++|+| ++.++++++.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~s~ 81 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-----CGNYLASASF 81 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-----TSSEEEEEET
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-----CCCEEEEEEC
Confidence 3456778987 8999999999999999999999999999877532 223478999999999987 4578999999
Q ss_pred CCcEEEEECCCC--eEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 219 DGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 219 dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
|+++++||+..+ +++..+.+|...|.+++|++++ .|++|+.|++|++||+.++.....
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------- 142 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC------------------- 142 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------------------
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------------------
Confidence 999999998876 4677889999999999999987 688999999999999875432110
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 375 (473)
...+.+|...|.+++|+|++++|
T Consensus 143 ---------------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 143 ---------------------------------------------------------VSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp ---------------------------------------------------------EEEECCCCSCEEEEEECSSSSCE
T ss_pred ---------------------------------------------------------EEEecCcCCCeEEEEECCCCCEE
Confidence 11233566789999999999999
Q ss_pred EEEECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceee
Q 011978 376 ASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ---------------KLKQ 438 (473)
Q Consensus 376 asgs~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~---------------~~~~ 438 (473)
++|+.|++|++||..+++ +...+.+|.+.|++++|+|+|++|++++.|++|+|||.... +...
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 999999999999998875 45778999999999999999999999999999999996421 1223
Q ss_pred cccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 439 DLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 439 ~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+.+ |...|++++|+|++..|++++.|+.|++|.
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 3444 888999999999999999999999999995
No 66
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.6e-38 Score=304.58 Aligned_cols=270 Identities=30% Similarity=0.555 Sum_probs=237.5
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 184 (473)
.+|...|.++++ ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 457788999887 7999999999999999999999998899999999999999 788999999999999999998876
Q ss_pred ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE---EEecCccccEEEEEecCCCeEEEeecCC
Q 011978 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (473)
Q Consensus 185 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~l~s~~~d~ 261 (473)
.. .+.+|...|.++.|++ ..+++|+.||.|++||+.++... ..+.+|...|.+++|+ ...+++|+.|+
T Consensus 206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg 276 (435)
T 1p22_A 206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR 276 (435)
T ss_dssp EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence 54 4678999999999854 48999999999999999887654 6778999999999994 45799999999
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.|++||+++++.+..+.+
T Consensus 277 ~i~vwd~~~~~~~~~~~~-------------------------------------------------------------- 294 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNG-------------------------------------------------------------- 294 (435)
T ss_dssp EEEEEETTTCCEEEEEEC--------------------------------------------------------------
T ss_pred eEEEEECCcCcEEEEEcC--------------------------------------------------------------
Confidence 999999988766554432
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
|...+.++++ +++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++|+
T Consensus 295 -----------------~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 295 -----------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp -----------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred -----------------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 3345666667 4689999999999999999999999999999999999999 788999999
Q ss_pred CCCcEEEEECCCCc---------eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 422 KDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.||.|++||+.+++ ....+.+|...|++++| ++++|++++.|++|++|+
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 99999999997655 67788899999999999 788999999999999996
No 67
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=295.83 Aligned_cols=288 Identities=17% Similarity=0.202 Sum_probs=235.3
Q ss_pred ccccccCCcccEEEEEECCC---CCeEEEEeCCCeEEEEeCCC-Ccee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeE
Q 011978 100 CSATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~---~~~lat~s~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i 174 (473)
....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++++.||.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 34567899999999999999 69999999999999999987 4444 5677899999999999999999999999999
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l 254 (473)
++||+.+++... ..+|...|.++.|.+ .+++..+++++.|+.|++||+++++.+..+..+. .+.++.+.++ .+
T Consensus 111 ~iwd~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 183 (368)
T 3mmy_A 111 KMWDLSSNQAIQ--IAQHDAPVKTIHWIK---APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MA 183 (368)
T ss_dssp EEEETTTTEEEE--EEECSSCEEEEEEEE---CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EE
T ss_pred EEEEcCCCCcee--eccccCceEEEEEEe---CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-ee
Confidence 999999887543 567999999999944 2255689999999999999999998888777665 5666666644 67
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++++.|+.+++|++...........
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~------------------------------------------------------- 208 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIE------------------------------------------------------- 208 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECC-------------------------------------------------------
T ss_pred EEEeCCCcEEEEEeccccchhhhcc-------------------------------------------------------
Confidence 7888999999999876432211000
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc----EEEEEECCCcEEEEeCCCC---ceEEEeeCCcc----
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ----WVASASFDKSIKLWNGTTG---KFVAVFRGHVG---- 403 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~----~lasgs~d~~v~lwd~~~~---~~~~~~~~h~~---- 403 (473)
..+...+.++++.++.. .+++++.|+.|++||+... +.+..+.+|..
T Consensus 209 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 209 ----------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp ----------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred ----------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 00111233344443333 3999999999999999987 56777888876
Q ss_pred --------CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 404 --------PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 404 --------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|||++|++++.|+..+.|
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998755444
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-37 Score=297.13 Aligned_cols=252 Identities=26% Similarity=0.475 Sum_probs=211.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
..|.+++|+|+|++||+|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~- 202 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT- 202 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE-
Confidence 3599999999999999999999999999999998888999999999999999999999999999999999998875432
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEecCCC-eEEEeecC
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQD 260 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~s~~~d 260 (473)
..+...+..+.|.|. ++.++++++.|+.|++||+++++.+..+ .+|...|.+++|++++ .|++|+.|
T Consensus 203 -~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 203 -LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp -EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 235567888888762 4568999999999999999998887766 5899999999999988 58899999
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
++|++||+++.........
T Consensus 278 ~~v~~wd~~~~~~~~~~~~------------------------------------------------------------- 296 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKT------------------------------------------------------------- 296 (393)
T ss_dssp SEEEEEEC------------------------------------------------------------------------
T ss_pred CEEEEEECCCCCCcccccC-------------------------------------------------------------
Confidence 9999999876432211000
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEec------CC
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSA------DS 414 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp------~g 414 (473)
.........+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|++ ++
T Consensus 297 ------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~ 370 (393)
T 1erj_A 297 ------PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred ------CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence 000011223457888999999999999999999999999999999999999999999999999986 68
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 011978 415 RLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~ 433 (473)
++||+|+.||+|+||++..
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred CEEEEECCCCcEEECcccc
Confidence 8999999999999999864
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-38 Score=301.06 Aligned_cols=283 Identities=25% Similarity=0.410 Sum_probs=231.9
Q ss_pred CcccEEEEEEEece----------eEEEeec--ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---
Q 011978 77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--- 141 (473)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~--- 141 (473)
+...+..+.+.|.. .++++.. ......+.+|...|.+++|+|+|++||+|+.|+.|++||+.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 44566777776643 3345543 34556778999999999999999999999999999999986532
Q ss_pred ----eeEEEcCCCCCEEEEEECCC-CCeEEEEecCCeEEEeeCCCCccccc----cCCCcCCcEEEEEeceeccCCCCce
Q 011978 142 ----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRR 212 (473)
Q Consensus 142 ----~~~~~~~~~~~v~~l~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~ 212 (473)
....+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.... ...+|...|.++.|.+. +...
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~ 220 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL----NANM 220 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS----SCCE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC----CCCE
Confidence 23346789999999999997 45799999999999999998875432 23679999999998763 3468
Q ss_pred EEEeeCCCcEEEEECC-CCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 213 FVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
|++|+.|++|++||++ ....+..+.+|...|.+++|+|++ .+++|+.|++|++||+++++.+..+..+..
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-------- 292 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD-------- 292 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS--------
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc--------
Confidence 9999999999999998 457788889999999999999987 688999999999999998876654332110
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 370 (473)
....+...+.+++|+|
T Consensus 293 ----------------------------------------------------------------~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 293 ----------------------------------------------------------------RNDNELPIVTSVAFSI 308 (380)
T ss_dssp ----------------------------------------------------------------SSCCSSCSCSEEEECS
T ss_pred ----------------------------------------------------------------ccccccCceEEEEECC
Confidence 0011223578999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCceEEEe----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKFVAVF----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
+|++|++|+.||.|++||..+++.+..+ .+|.+.|++++|+|||++|++||.||+|++|++...+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999888776 6899999999999999999999999999999987653
No 70
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-37 Score=288.54 Aligned_cols=253 Identities=23% Similarity=0.436 Sum_probs=208.9
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 45678999999999999999999999999999999999999888899999999999999999999999999999999987
Q ss_pred CCcccc-ccCCCcCCcEEEEEeceecc-----CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-e
Q 011978 181 TGKPSG-NPLSGHKKWITGISWEPVHL-----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V 253 (473)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~~i~~~~~~~-----~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 253 (473)
...... ....+|...|.++.|+|... .+....+++++.|+.|++|| ........+.+|...|.+++|++++ .
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 433221 22347889999999988542 12236899999999999999 4567777888999999999999988 5
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
|++|+.|++|++||+.+.....
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~---------------------------------------------------------- 249 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQ---------------------------------------------------------- 249 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCS----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCcccc----------------------------------------------------------
Confidence 8899999999999984321100
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE--Eee-----------C
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFR-----------G 400 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~--~~~-----------~ 400 (473)
..+ .+...|.+++|+|+++++++| .|+.|++||+.+++... .+. +
T Consensus 250 --------------------~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 250 --------------------REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp --------------------EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred --------------------eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 000 112348899999999988765 57789999998765433 333 6
Q ss_pred CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
|...|.+++|+|+|++|++|+.||+|++|++.++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 8889999999999999999999999999998764
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=298.86 Aligned_cols=305 Identities=19% Similarity=0.279 Sum_probs=252.7
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCccccccC------------CCcCC
Q 011978 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPL------------SGHKK 194 (473)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~ 194 (473)
.++.+++|++..+.....+.+|...|.+++|+| ++++|++|+.||.|++||+.++....... .+|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 345678888887777777889999999999999 99999999999999999998876443221 36999
Q ss_pred cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC----eEEEeecCCeEEEEECCC
Q 011978 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQ 270 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~~~d~~i~~wd~~~ 270 (473)
.|.++.|.|. +...+++++.|+.|++||+.+++....+. +...+.++.+.+.+ .+++++.|+.|++||+.+
T Consensus 101 ~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 101 SVETVQWYPH----DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEEECTT----CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cEEEEEEccC----CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 9999999873 34589999999999999999998887775 66788899987642 688999999999999999
Q ss_pred CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (473)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 350 (473)
++.+..+..|...|.+++++++. ...+++++.|+.+++||+....
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRY-----------------------------------DYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSC-----------------------------------TTEEEEEETTSCEEEEETTCSS
T ss_pred cceeeeecCCCCcEEEEEECCCC-----------------------------------CcEEEEEcCCCcEEEEECCCCC
Confidence 99999999999999999988752 1248899999999999987654
Q ss_pred CCeeee---------------cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-----cCEEEEEE
Q 011978 351 QPKTRM---------------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-----GPVYQISW 410 (473)
Q Consensus 351 ~~~~~~---------------~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-----~~v~~v~~ 410 (473)
.....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+. ..+.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
T 4a11_B 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300 (408)
T ss_dssp CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEEC
T ss_pred cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEe
Confidence 333322 5788899999999999999999999999999999887655443321 11222222
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...+..+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus 301 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 33455677778899999999999999999999999999999999999999999999999996
No 72
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=286.55 Aligned_cols=250 Identities=27% Similarity=0.438 Sum_probs=202.4
Q ss_pred CceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc--cccccCCC-cCCcEEEEEeceeccCCCCceEEEe
Q 011978 140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSA 216 (473)
Q Consensus 140 ~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~~s~ 216 (473)
...+..+.+|...|.+++|+|+ +|++|+.|++|++||+.++. .......+ |...|.++.|+| ++.+++++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~las~ 76 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-----HTSLLAAG 76 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-----TSSEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-----CCCEEEEE
Confidence 3455677899999999999987 99999999999999998753 22222134 999999999987 45689999
Q ss_pred eCCCcEEEEECCC-------CeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEE
Q 011978 217 SKDGDARIWDVSL-------RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (473)
Q Consensus 217 s~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 288 (473)
+.|++|++||+.. .+++..+.+|...|.+++|++++ .|++|+.|++|++||+.......
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------------- 143 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------------- 143 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC-------------
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe-------------
Confidence 9999999999853 45677889999999999999987 58899999999999984321000
Q ss_pred ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 368 (473)
.....+.+|...|.+++|
T Consensus 144 --------------------------------------------------------------~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 144 --------------------------------------------------------------ECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp --------------------------------------------------------------EEEEEECCCSSCEEEEEE
T ss_pred --------------------------------------------------------------EEEEEeccCCCceEEEEE
Confidence 001223467778999999
Q ss_pred CCCCcEEEEEECCCcEEEEeCCCC--ceEEEeeCCccCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC--------ce
Q 011978 369 SPDGQWVASASFDKSIKLWNGTTG--KFVAVFRGHVGPVYQISWSAD--SRLLLSGSKDSTLKVWDIRTQ--------KL 436 (473)
Q Consensus 369 sp~g~~lasgs~d~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~--g~~l~s~s~Dg~i~iwd~~~~--------~~ 436 (473)
+|++++|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+ ..
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999999999999998776 678889999999999999998 778999999999999998754 33
Q ss_pred eecccc-cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 437 KQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 437 ~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
...+.+ |...|++++|++++ +|++++.|++|++|+
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 445555 88999999999765 899999999999996
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-36 Score=316.30 Aligned_cols=288 Identities=23% Similarity=0.363 Sum_probs=254.7
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcE
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i 222 (473)
...+.+|...|.+++|+|+|++|++++.||.|++||+.+++... .+.+|...|.++.|+| ++.++++++.||.|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI 79 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeC-----CCCEEEEEeCCCeE
Confidence 34567899999999999999999999999999999999887554 4668999999999998 45689999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccc
Q 011978 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
++||+.+++.+..+.+|...|++++|++++ .+++++.||.|++||+.++ .....+.+|...|.+++++|..
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~------- 152 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD------- 152 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE-------
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC-------
Confidence 999999999999999999999999999988 6889999999999999987 6677888899999999988721
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEE
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASA 378 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasg 378 (473)
...+++++.|+.+++||.............+...+.+++|+| ++.+|++|
T Consensus 153 ----------------------------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 153 ----------------------------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp ----------------------------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred ----------------------------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 236899999999999998766555555555668899999999 99999999
Q ss_pred ECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCE
Q 011978 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 458 (473)
Q Consensus 379 s~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~ 458 (473)
+.||.|++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+..|...+.+++|+|+++.
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred --EEEEeCCCcEEecc
Q 011978 459 --VASGGKDRVLKLWM 472 (473)
Q Consensus 459 --l~s~~~D~~i~~w~ 472 (473)
+++++ |+.+.+|.
T Consensus 285 ~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 285 NYIASGF-DNGFTVLS 299 (814)
T ss_dssp GEEEEEE-TTEEEEEE
T ss_pred eEEEEEe-CCCEEEEE
Confidence 55554 55565553
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-38 Score=307.86 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=220.0
Q ss_pred cccCCcccEEEEEECCC------CCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCCCEEEEEECCCCCeE
Q 011978 103 TIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHL 165 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~------~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l 165 (473)
.+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++. +...+.+|...|.+++|++++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 35678899999999997 5799999999999999997653 234678899999999999864 89
Q ss_pred EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEE--eceeccCCCC-ceEEEeeCCCcEEEEECCCCeEEEEecCccc-
Q 011978 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--WEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL- 241 (473)
Q Consensus 166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~~~~-~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~- 241 (473)
++|+.||+|++||++++......+.+|...|.++. |.| ++ ..|++++.|++|++||+++++++..+.+|..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 99999999999999877544445778999999994 443 33 5899999999999999998877666666653
Q ss_pred -cEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 242 -AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 242 -~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
.|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++++|+.
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-------------------------- 409 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-------------------------- 409 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC--------------------------
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC--------------------------
Confidence 47899999977 68889999999999999999888899999999999998763
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee-ec-C-cccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceE
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-MT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFV 395 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~-~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~ 395 (473)
..+++|+.|+++++|++......... .. . +...+.+++|+|+++.+.. .| .+++|+.. ++.++
T Consensus 410 ----------~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 410 ----------PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDVSK 476 (524)
T ss_dssp ----------CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC--------
T ss_pred ----------CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCcce
Confidence 35899999999999997542111000 00 1 1124679999999985532 22 34455443 56778
Q ss_pred EEeeCCccCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978 396 AVFRGHVGPVYQISWSADSR---LLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 396 ~~~~~h~~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~ 433 (473)
..+.+|.++|.+|+|+|++. .||+|+.||.|+||++..
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 88999999999999999964 999999999999999864
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-36 Score=291.06 Aligned_cols=290 Identities=19% Similarity=0.270 Sum_probs=239.9
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+| ..+....|+|++++||+|+.|+.|++||+.++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3444555 445556789999999999999999999999988877778999999999999999999999999999999999
Q ss_pred CCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC---ccccEEEEE----------
Q 011978 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVK---------- 247 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~---------- 247 (473)
+++... .+.+|...|.++.|+| ++..+++++.|+.|++||+++++.+..+.. |...+.++.
T Consensus 170 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 170 DGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp TCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred CCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 887553 4678999999999987 456899999999999999999999888864 334455544
Q ss_pred -----------ecCCC-eEEEeecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHH
Q 011978 248 -----------WGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 248 -----------~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
|++++ .+++|+.||.|++||+++++.+..+. .|...|.+++++++.
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------- 302 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN--------------------- 302 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC---------------------
T ss_pred ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC---------------------
Confidence 56777 68899999999999999988777664 477889999887752
Q ss_pred HHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCC-
Q 011978 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG- 392 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~- 392 (473)
...+++++.|+.+++||+.....+...+.+ |...+.++.+ |++++|++++.|+.|++||+...
T Consensus 303 --------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 303 --------------ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp --------------TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred --------------CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 126899999999999999877665555555 6677888855 57899999999999999998763
Q ss_pred --------ceEEEeeCCccCEEEEEEecCCC---EEEEEeCCCcEEEEECCC
Q 011978 393 --------KFVAVFRGHVGPVYQISWSADSR---LLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 393 --------~~~~~~~~h~~~v~~v~~sp~g~---~l~s~s~Dg~i~iwd~~~ 433 (473)
.....+.+|.+.|.+++|+|++. .|++++.+|.+.+|++..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234567889999999999999 777788899999999864
No 76
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=293.66 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=233.7
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
-...|.+++|+|||+++|+++.|++|+ |....+.+ .+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--- 78 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence 457899999999999999999999999 76655443 6899999999999998 46666666543222
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-----cEEEEEecCCC-eEEEeecC
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGSQD 260 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~-~l~s~~~d 260 (473)
.....|...|.+++|+| ++.++++++.||.+++||... ++..+. |.. .|.+++|+||| .|++|+.|
T Consensus 79 ~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp SSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred EeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 12225688899999998 667999999999999999544 666666 665 59999999998 58999999
Q ss_pred CeEEEEECCCCce-------eeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 261 CTIKVWETTQGKL-------IREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 261 ~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
|+|++||+.++.. +..+ .+|..+|.+++++|+
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------------------------------------- 193 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------------------------------------- 193 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------------------------------------
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-------------------------------------
Confidence 9999999998853 5665 567789999999875
Q ss_pred ceEEEecCCceEEEEeCCCCCCC--eeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~--~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
. +++++.|+++++|+....... ...+ .+|...|.+++|+ |++||+++ +++|++||..+++......+|.+.|.
T Consensus 194 g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 194 V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence 2 678888999999998765532 2334 4788899999999 68999997 69999999998877444448999999
Q ss_pred EEEE--ecCCCEEEEEeCCCcEEEEECCCC-----------------------ceeecccccCCCEEEEEEeeCCCEEEE
Q 011978 407 QISW--SADSRLLLSGSKDSTLKVWDIRTQ-----------------------KLKQDLPGHADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 407 ~v~~--sp~g~~l~s~s~Dg~i~iwd~~~~-----------------------~~~~~~~~h~~~i~~l~~s~d~~~l~s 461 (473)
+++| +||+..|++++.||+ ++|....- .....+.+ ...|++++|||||+.+|+
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence 9999 999999999999999 99987421 01112222 345999999999999998
Q ss_pred EeC
Q 011978 462 GGK 464 (473)
Q Consensus 462 ~~~ 464 (473)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-35 Score=288.39 Aligned_cols=282 Identities=31% Similarity=0.539 Sum_probs=247.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
.++...+.+|...|.+++|+ +..+++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++.|++|+.||.|++|
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW 224 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence 34566788999999999997 6799999999999999999999999999999999999995 5789999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG 257 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~ 257 (473)
|+.+++... .+.+|...|.++.|. +..+++++.||.|++||+++++++..+.+|...|.++.| ....++++
T Consensus 225 d~~~~~~~~-~~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~ 295 (445)
T 2ovr_B 225 DIETGQCLH-VLMGHVAAVRCVQYD-------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSG 295 (445)
T ss_dssp ESSSCCEEE-EEECCSSCEEEEEEC-------SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEE
T ss_pred ECCCCcEEE-EEcCCcccEEEEEEC-------CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEE
Confidence 999887553 467899999999872 468999999999999999999999999999999999999 34479999
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|+.|++||+++++.+..+.+|...+.++.+.. ..+++++.
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------~~l~~~~~ 337 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--------------------------------------NILVSGNA 337 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--------------------------------------TEEEEEET
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC--------------------------------------CEEEEEeC
Confidence 9999999999999999999998888887776532 36899999
Q ss_pred CceEEEEeCCCCCCCeeeecC---cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe-----eCCccCEEEEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----RGHVGPVYQIS 409 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~-----~~h~~~v~~v~ 409 (473)
|+.+++||..... ....+.+ |...|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++
T Consensus 338 dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 338 DSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp TSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred CCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 9999999986543 3334443 78889999996 689999999999999999999998887 46888999999
Q ss_pred EecCCCEEEEEeCCCc----EEEEECCC
Q 011978 410 WSADSRLLLSGSKDST----LKVWDIRT 433 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~----i~iwd~~~ 433 (473)
|+|++.+|++|+.||+ |.+||+..
T Consensus 415 ~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 415 ASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999998 99999875
No 78
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-35 Score=274.09 Aligned_cols=252 Identities=29% Similarity=0.542 Sum_probs=217.3
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
++...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 44566789999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecCCC-eEEE
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYT 256 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~s 256 (473)
+++++... .+..|...|.++.|+| ++..+++++.|+.|++||+++++.+..+. .+...+.+++|++++ .+++
T Consensus 136 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 136 VKTGKCLK-TLPAHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred CCCCEEEE-EecCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 99887543 4678899999999887 45689999999999999999998877654 566789999999987 5889
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
++.|+.|++||+++++.+..+.+|...
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------------------------------- 236 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------------------------------- 236 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCS-----------------------------------------------------
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCc-----------------------------------------------------
Confidence 999999999999988776655433210
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL 416 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 416 (473)
...+......+++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++
T Consensus 237 -----------------------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 293 (312)
T 4ery_A 237 -----------------------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293 (312)
T ss_dssp -----------------------SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSE
T ss_pred -----------------------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCc
Confidence 001112233467899999999999999999999999999999999999999999999
Q ss_pred EEEEe--CCCcEEEEECC
Q 011978 417 LLSGS--KDSTLKVWDIR 432 (473)
Q Consensus 417 l~s~s--~Dg~i~iwd~~ 432 (473)
|++++ .|++|++|+..
T Consensus 294 l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 294 IASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECTTTCCEEEEECC
T ss_pred eEEEEccCCccEEEecCC
Confidence 99997 69999999864
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.3e-37 Score=286.27 Aligned_cols=291 Identities=20% Similarity=0.341 Sum_probs=210.7
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC--CCCeEEEEecCCeEE
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQ 175 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--dg~~l~s~~~dg~i~ 175 (473)
..+.||.+.|.+++|+|++++||+|+.||.|++||+.++. ....+.+|...|.+++|+| |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4567999999999999999999999999999999998763 4556678999999999999 699999999999999
Q ss_pred EeeCCCCcc--------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-----------
Q 011978 176 CWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL----------- 236 (473)
Q Consensus 176 iwd~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~----------- 236 (473)
+||+.+++. ....+.+|...|.++.|.|.. .+..+++++.|+.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC---CCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 999987642 223467899999999998841 1468999999999999999876543221
Q ss_pred --cCccccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 237 --SGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 237 --~~h~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
.+|...+.+++|+++ + .+++++.|+.+.+|+...++..
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------------ 205 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------------------------ 205 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------------------------
Confidence 257778888888875 3 5777888888866665443221
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC----cEEEEEECCCcEEE
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKL 386 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g----~~lasgs~d~~v~l 386 (473)
....+.+|...|.+++|+|++ ++|++|+.||.|++
T Consensus 206 -----------------------------------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 206 -----------------------------------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp -----------------------------------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred -----------------------------------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 012234577789999999998 89999999999999
Q ss_pred EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe----CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEE
Q 011978 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS----KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s----~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~ 462 (473)
||++++........+...+....+++....++.+. ....+.+|+....+.+..+.+|...|++++|+|++++|+++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 99987765544444444444455555555444443 34456667666677788889999999999999999999999
Q ss_pred eCCCcEEecc
Q 011978 463 GKDRVLKLWM 472 (473)
Q Consensus 463 ~~D~~i~~w~ 472 (473)
+.|+.|++|+
T Consensus 325 ~~dg~v~iw~ 334 (351)
T 3f3f_A 325 GDDGKVRLWK 334 (351)
T ss_dssp ETTSCEEEEE
T ss_pred cCCCcEEEEe
Confidence 9999999996
No 80
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=286.48 Aligned_cols=255 Identities=21% Similarity=0.415 Sum_probs=211.1
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQ 175 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~ 175 (473)
+...+.+|.+.|.+++|+|++++||+|+.||.|+|||+. +......+.+|...|.+++|+++ +++|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345678999999999999999999999999999999997 44566678899999999999987 99999999999999
Q ss_pred EeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEecCccccEEEEEecC--
Q 011978 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGG-- 250 (473)
Q Consensus 176 iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~-- 250 (473)
+||+.+++. ....+.+|...|.++.|+|.. .+..+++++.|+.|++||+..+ .....+.+|...|.+++|++
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCC---CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 999988762 233467799999999998841 1468999999999999999877 34456778999999999998
Q ss_pred -----------CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 251 -----------DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 251 -----------~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
++ .+++++.|+.|++||++++.....
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------------------ 197 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------------------------------------ 197 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEE------------------------------------------
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee------------------------------------------
Confidence 34 678888888888888765432110
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC---CcEEEEEECCCcEEEEeCCCCc--
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---GQWVASASFDKSIKLWNGTTGK-- 393 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~---g~~lasgs~d~~v~lwd~~~~~-- 393 (473)
....+.+|...|.+++|+|+ +++|++++.||.|++||+.++.
T Consensus 198 ---------------------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 198 ---------------------------------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp ---------------------------------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred ---------------------------------eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 01234467788999999999 8999999999999999998864
Q ss_pred -eEEEe--eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 394 -FVAVF--RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 394 -~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
....+ ..|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 22233 3488899999999999999999999999999987
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-35 Score=288.47 Aligned_cols=282 Identities=26% Similarity=0.408 Sum_probs=240.9
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEC--CCCCeEEEEecCCeEE
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKHLVSGSKAGELQ 175 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s--~dg~~l~s~~~dg~i~ 175 (473)
.++...+.+|.+.|.+++|+|++ .|++|+.||+|++||+.++..+..+.+|...|.+++|+ +++++|++|+.||.|+
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 34566778999999999999988 99999999999999999999998999999999999998 5788999999999999
Q ss_pred EeeCCCCccc----------------------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978 176 CWDPQTGKPS----------------------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233 (473)
Q Consensus 176 iwd~~~~~~~----------------------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~ 233 (473)
+||+.++... ...+.+|...+.++.. ++..+++++.|+.|++||+.+++++
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~d~~i~vwd~~~~~~~ 303 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-------HGNIVVSGSYDNTLIVWDVAQMKCL 303 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-------ETTEEEEEETTSCEEEEETTTTEEE
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-------CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999876532 1235677777777742 3468999999999999999999999
Q ss_pred EEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 234 ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 234 ~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
..+.+|...|.+++|++++ .+++|+.|+.|++||+++++.+..+.+|...|.++.+++
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--------------------- 362 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--------------------- 362 (464)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---------------------
T ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---------------------
Confidence 9999999999999999987 689999999999999999999999999999999888753
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCC
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~ 392 (473)
..+++++.|+.+++||+..... .....+...+..++|+|++++|++|+ |+.|++||+.++
T Consensus 363 -----------------~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 363 -----------------KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp -----------------SEEEEEETTSEEEEEETTTCCE--EEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred -----------------CEEEEEeCCCcEEEEECCCCce--eeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3689999999999999875432 22234566788899999999999999 899999999999
Q ss_pred ceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011978 393 KFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVW 429 (473)
Q Consensus 393 ~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iw 429 (473)
+++.. +..|.+.|.+++|+ ++.++++++.||.+.+|
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 99875 67789999999997 44556666677765554
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-35 Score=283.85 Aligned_cols=276 Identities=23% Similarity=0.398 Sum_probs=219.4
Q ss_pred eeEEEeecc--cccc--cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE
Q 011978 90 AVFRIRPVN--RCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165 (473)
Q Consensus 90 ~~~~~~~~~--~~~~--~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 165 (473)
..++++... .+.. .+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.+++|+ +..|
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l 202 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYIL 202 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEE
Confidence 345555543 2333 345788999999999999999999999999999999999999999999999998885 6799
Q ss_pred EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe----EEEEecCccc
Q 011978 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTL 241 (473)
Q Consensus 166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~----~~~~~~~h~~ 241 (473)
++|+.|+.+++||..........+.+|...+..+.|.| .+..+++++.|+.+++||...++ .+.....|..
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 99999999999999876665556789999999998877 45789999999999999998764 3456678999
Q ss_pred cEEEEEecCCC--eEEE--eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978 242 AVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (473)
Q Consensus 242 ~v~~~~~~~~~--~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.|.+++|++.+ .+++ |+.|++|++||+.+++....+..
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-------------------------------------- 319 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-------------------------------------- 319 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC--------------------------------------
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc--------------------------------------
Confidence 99999999864 4444 56899999999988776543321
Q ss_pred HhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceE
Q 011978 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFV 395 (473)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~ 395 (473)
...+.++.|+|+++.+++++ .|+.|++||+.+++++
T Consensus 320 ------------------------------------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 320 ------------------------------------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp ------------------------------------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ------------------------------------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 12466788999999888776 7899999999999999
Q ss_pred EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978 396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 452 (473)
Q Consensus 396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 452 (473)
..+.+|.+.|++++|+|||++|||||.|++|+|||+...........+...+....+
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999999999999999999999999876554444444443333333
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-35 Score=302.38 Aligned_cols=249 Identities=29% Similarity=0.543 Sum_probs=212.3
Q ss_pred cccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
...+.+|...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 45678999999999999999999999999999999999999888899999999999999999999999999999999986
Q ss_pred CCcccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEe
Q 011978 181 TGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (473)
Q Consensus 181 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~ 257 (473)
...... ....+|...|.++.|+|.. ....+++++.|++|++||++.+++...+.+|...|++++|++++ .+++|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 543221 2235799999999998843 12479999999999999999999999999999999999999987 58899
Q ss_pred ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC
Q 011978 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (473)
Q Consensus 258 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (473)
+.|++|++||+++++.+..+.
T Consensus 580 ~~Dg~i~iwd~~~~~~~~~~~----------------------------------------------------------- 600 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKKLYSLE----------------------------------------------------------- 600 (694)
T ss_dssp ETTSBCEEEETTTTEEEECCB-----------------------------------------------------------
T ss_pred eCCCeEEEEECCCCceEEEec-----------------------------------------------------------
Confidence 999999999998876543221
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc---------------
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV--------------- 402 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~--------------- 402 (473)
+...+.+++|+|++.+|++++ |+.|++||+++++.+..+..+.
T Consensus 601 ---------------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 601 ---------------------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp ---------------------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred ---------------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 113478899999999888876 4569999999998877665321
Q ss_pred ----cCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 403 ----GPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 403 ----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
..+++++|||||++|++|+.||+|++||+..
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 2378999999999999999999999999853
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.5e-35 Score=276.44 Aligned_cols=287 Identities=16% Similarity=0.170 Sum_probs=207.3
Q ss_pred EEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceE
Q 011978 134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (473)
Q Consensus 134 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~ 213 (473)
||++.+..++.....|...|.+++|+|||++|++|+.++ +++|+..+++.... .+...+..+.+.+. ....+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---QEMRHLSKVRMLHR----TNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---EECSCCCEEEECTT----SSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---eecCCeEEEEEcCC----CCEEE
Confidence 566777777767788999999999999999999988765 78999887654321 11112444444431 12234
Q ss_pred EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEeccc
Q 011978 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTE 292 (473)
Q Consensus 214 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~ 292 (473)
++++.|++|++||..+++++..+. +...|.++.++++..++ ..|+.|++||+.++ +.+..+.. .....++++
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 678889999999999999988876 56689999999875443 35889999999988 66665554 222222221
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE--ecCCceEEEEeCCCCC--------------CC-eee
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KTR 355 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~-~~~ 355 (473)
..++. |+.|+.+++||..... .+ ...
T Consensus 148 -------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (355)
T 3vu4_A 148 -------------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL 190 (355)
T ss_dssp -------------------------------------TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred -------------------------------------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence 12333 7899999999987543 12 566
Q ss_pred ecCcccceeEEEECCCCcEEEEEECCCc-EEEEeCCCCceEEEee-C-CccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 356 MTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 356 ~~~~~~~v~~v~~sp~g~~lasgs~d~~-v~lwd~~~~~~~~~~~-~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
+.+|...|++++|+|+|++||+|+.|++ |++||+++++++..+. + |.+.|.+++|+|+|++|++++.|++|++||+.
T Consensus 191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 7899999999999999999999999998 9999999999999998 6 99999999999999999999999999999997
Q ss_pred CCce--eeccc---------------------ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 433 TQKL--KQDLP---------------------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 433 ~~~~--~~~~~---------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.... ...+. .+......++|++|++.|++++.||.+++|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 6431 11111 1112336689999999999999999999985
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-34 Score=269.47 Aligned_cols=252 Identities=29% Similarity=0.513 Sum_probs=216.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~ 179 (473)
+...+.+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||.
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 34567899999999999999999999999999999999998888778888889999999999999999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 258 (473)
...........+|...+..+.|.+.. ....+++++.|+.|++||+.+++.+..+.+|...|++++|++++ .|++|+
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEeccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 87766666678899999999987643 33578899999999999999999999999999999999999987 688999
Q ss_pred cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.|++|++||+++++.+..+..
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~----------------------------------------------------------- 255 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDG----------------------------------------------------------- 255 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEEC-----------------------------------------------------------
T ss_pred CCCeEEEEEeccCceeeeecC-----------------------------------------------------------
Confidence 999999999987665443221
Q ss_pred ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe---------eCCccCEEEEE
Q 011978 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF---------RGHVGPVYQIS 409 (473)
Q Consensus 339 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~---------~~h~~~v~~v~ 409 (473)
...+.+++|+|++.++ +++.|+.|++||++++..+..+ .+|...|++++
T Consensus 256 ---------------------~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 256 ---------------------GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp ---------------------SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred ---------------------CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 1347788999987755 4556899999999988766554 36888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCc
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~~~~ 435 (473)
|+|||++|++|+.||.|+|||+.+|+
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999998875
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=277.39 Aligned_cols=250 Identities=20% Similarity=0.358 Sum_probs=207.9
Q ss_pred eEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc
Q 011978 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (473)
Q Consensus 143 ~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~ 221 (473)
+..+.+|...|.+++|+|++++|++|+.||.|++||+..+.. ....+.+|...|.++.|.+.. ++..+++++.||.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDGK 80 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSC
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---CCCEEEEeccCCE
Confidence 345678999999999999999999999999999999974322 223567899999999997631 2568999999999
Q ss_pred EEEEECCCCe--EEEEecCccccEEEEEecCC--C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceee
Q 011978 222 ARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (473)
Q Consensus 222 i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (473)
|++||+.+++ .+..+.+|...|.+++|+++ + .+++++.|+.|++||+.++.....
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-------------------- 140 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-------------------- 140 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--------------------
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--------------------
Confidence 9999999987 77788899999999999987 5 688999999999999876532111
Q ss_pred eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC------
Q 011978 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------ 370 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------ 370 (473)
..+.+|...|.+++|+|
T Consensus 141 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 141 ---------------------------------------------------------IIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp ---------------------------------------------------------EEEECCTTCEEEEEECCCC----
T ss_pred ---------------------------------------------------------EEecCCCCceEEEEEcCcccccc
Confidence 11223445566777777
Q ss_pred -------CCcEEEEEECCCcEEEEeCCCCc----eEEEeeCCccCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCc-
Q 011978 371 -------DGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQISWSAD---SRLLLSGSKDSTLKVWDIRTQK- 435 (473)
Q Consensus 371 -------~g~~lasgs~d~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~---g~~l~s~s~Dg~i~iwd~~~~~- 435 (473)
++.+|++|+.|+.|++||+++++ ....+.+|.+.|.+++|+|+ +++|++++.||.|++||++.+.
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 79999999999999999998764 45678899999999999999 8999999999999999998753
Q ss_pred ----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 436 ----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 436 ----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.......|...|++++|+|++++|++++.|+.|++|+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 2333445888999999999999999999999999996
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-35 Score=282.97 Aligned_cols=278 Identities=21% Similarity=0.358 Sum_probs=225.6
Q ss_pred EEEEEECCCCCeEE-EEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCCCcc
Q 011978 111 VLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP 184 (473)
Q Consensus 111 V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~~~~ 184 (473)
...++++|+...++ +++.||.|+||++.... ....+.+|...|.+++|+| ++++|++|+.||.|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34588888876554 57889999999996542 2344678999999999999 999999999999999999988742
Q ss_pred ------ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCC-eEE
Q 011978 185 ------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIY 255 (473)
Q Consensus 185 ------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~ 255 (473)
....+.+|...|.++.|+|.. ...+++++.|+.|++||+.+++.+..+ .+|...|.+++|++++ .|+
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 223467899999999998842 258999999999999999999999999 8999999999999987 689
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+++.|+.|++||+++++.+..+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~--------------------------------------------------------- 215 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKD--------------------------------------------------------- 215 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE---------------------------------------------------------
T ss_pred EEecCCcEEEEeCCCCceeeeec---------------------------------------------------------
Confidence 99999999999998876554331
Q ss_pred cCCceEEEEeCCCCCCCeeeecCccc-ceeEEEECCCCcEEEEE---ECCCcEEEEeCCCCce-EEEee-CCccCEEEEE
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPDGQWVASA---SFDKSIKLWNGTTGKF-VAVFR-GHVGPVYQIS 409 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~lasg---s~d~~v~lwd~~~~~~-~~~~~-~h~~~v~~v~ 409 (473)
.+|.. .+.+++|+|++++|++| +.|+.|++||+++++. +.... .|...+.+++
T Consensus 216 ---------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 216 ---------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ---------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ---------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 11222 26778999999999999 7899999999998754 33333 4777899999
Q ss_pred EecCCCEEEE-EeCCCcEEEEECCCCce-eecccc--cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 410 WSADSRLLLS-GSKDSTLKVWDIRTQKL-KQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 410 ~sp~g~~l~s-~s~Dg~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+|++++|++ ++.||.|++||+.+++. ...+.. |...|.+++|+|++.++++ .|+.+++|.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999875 55799999999998773 344433 4588999999999998765 566899985
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=276.82 Aligned_cols=247 Identities=25% Similarity=0.453 Sum_probs=212.1
Q ss_pred CCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +++.|++|+.||.|++||+......
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 48999999999999999999999999999999999988899999999999999 4679999999999999999865554
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC--eEEEee--cCC
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS--QDC 261 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~--~d~ 261 (473)
...+.+|...|.++.|+| ++..+++++.|+.|++||+++++.+..+.+|...|.+++|++++ .+++++ .|+
T Consensus 210 ~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRS-----DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred eeEEcCCCCCeeEEEEcC-----CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 556788999999999987 45689999999999999999999999999999999999999865 455654 799
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.|++||+.+++.+..+.
T Consensus 285 ~i~i~d~~~~~~~~~~~--------------------------------------------------------------- 301 (401)
T 4aez_A 285 QIHFWNAATGARVNTVD--------------------------------------------------------------- 301 (401)
T ss_dssp EEEEEETTTCCEEEEEE---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEEEEe---------------------------------------------------------------
Confidence 99999998776544321
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceEE--EeeCCccCEEEEEEecCCCEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVA--VFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~sp~g~~l 417 (473)
+...+.+++|+|++++|++++ .||.|++||+.+++... .+.+|.+.|.+++|+|+|++|
T Consensus 302 -----------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 302 -----------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp -----------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred -----------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 123578899999999999954 89999999999876554 467899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeec
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQD 439 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~ 439 (473)
++++.||.|++||+.+++....
T Consensus 365 ~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 365 STAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEECTTSEEEEEECCC------
T ss_pred EEEeCCCcEEEEECCCCccccc
Confidence 9999999999999998776544
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-36 Score=284.13 Aligned_cols=242 Identities=16% Similarity=0.196 Sum_probs=199.7
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc-cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEE
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd 226 (473)
.+..+|.+++|+|+|++|++|+.|+.|++||+.++. .....+.+|...|.++.|+| ++.++++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEEEE
Confidence 356789999999999999999999999999998874 33456788999999999987 456899999999999999
Q ss_pred CCCCe---EEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 227 VSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 227 ~~~~~---~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
+.++. ....+.+|...|.+++|++++ .+++++.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------------------- 136 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW--------------------------- 136 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC---------------------------
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce---------------------------
Confidence 99877 677788999999999999987 58899999999999987643210
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d 381 (473)
....+.+ |...|.+++|+|++++|++|+.|
T Consensus 137 -------------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 137 -------------------------------------------------VSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -------------------------------------------------CCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -------------------------------------------------eeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 0111223 67789999999999999999999
Q ss_pred CcEEEEeCC------------------CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eec
Q 011978 382 KSIKLWNGT------------------TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL----KQD 439 (473)
Q Consensus 382 ~~v~lwd~~------------------~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~----~~~ 439 (473)
+.|++||+. .++++..+ +|.+.|.+++|+|++++|++++.||.|++||+.+++. ...
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 999999985 34566667 8999999999999999999999999999999999877 788
Q ss_pred ccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 440 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 440 ~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+.+|...|.+++|+||+++|++++.|+.+.+|
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred ecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 89999999999999999999999888877554
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.7e-35 Score=277.39 Aligned_cols=264 Identities=16% Similarity=0.203 Sum_probs=219.2
Q ss_pred ccccccCCcccEEEEEECCC----C---CeEEEEeCCCeEEEEeCCCCce-----eEEEcCC-----CCCEEEEEEC---
Q 011978 100 CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVRLWDLNTQTP-----MFKCTGH-----KNWVLCIAWS--- 159 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~----~---~~lat~s~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~l~~s--- 159 (473)
+...+.+|...|.+++|+|+ + ++|++++.|+.|++||+.++.. ...+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 45667899999999999999 9 9999999999999999988776 7778888 5899999999
Q ss_pred -CCCCe-EEEEecCCeEEEeeCCC------Cccccc----cC-------CCcCCcEEEEEeceeccCCCCceEEEeeCCC
Q 011978 160 -ADGKH-LVSGSKAGELQCWDPQT------GKPSGN----PL-------SGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (473)
Q Consensus 160 -~dg~~-l~s~~~dg~i~iwd~~~------~~~~~~----~~-------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg 220 (473)
|++++ |++++.||.|++||+.+ ++.... .+ ..|...|.++.|+| ++ .+++++.|+
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg 207 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNG 207 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTS
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCC
Confidence 99999 99999999999999987 543320 22 45788899999887 45 899999999
Q ss_pred cEEEEECCCCeEEEEecC---c---cccEEEEEecCCC-eEEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 221 DARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~---h---~~~v~~~~~~~~~-~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
.|++||+++++.+..+.+ | ...|.+++|++++ .|++++.| +.|++||+++++.+..+......
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~------- 280 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS------- 280 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-------
Confidence 999999999999999988 9 9999999999887 58899999 99999999988766554321100
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 370 (473)
.........|...|.+++|+|
T Consensus 281 -----------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 281 -----------------------------------------------------------SQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp ----------------------------------------------------------------CCBSBSSCEEEEEECS
T ss_pred -----------------------------------------------------------ccccccccccCCcEEEEEECC
Confidence 000001123667899999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCceEEEee------CC---------------ccCEEEEEEecCC----------CEEEE
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQISWSADS----------RLLLS 419 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~------~h---------------~~~v~~v~~sp~g----------~~l~s 419 (473)
++++|++++.|+.|++||+.+++.+..+. +| ..+|++++|+|++ ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999999 88 9999999999998 79999
Q ss_pred EeCCCcEEEEECCCCc
Q 011978 420 GSKDSTLKVWDIRTQK 435 (473)
Q Consensus 420 ~s~Dg~i~iwd~~~~~ 435 (473)
++.||.|++||+.+++
T Consensus 382 ~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 382 VCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTEEEEEEEEC--
T ss_pred ecCCCcEEEEEcCCCC
Confidence 9999999999998753
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=271.03 Aligned_cols=255 Identities=17% Similarity=0.304 Sum_probs=208.4
Q ss_pred cCCcccEEEEEECCC---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCEEEEE------ECCCCCeEEEEecCCeE
Q 011978 105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIA------WSADGKHLVSGSKAGEL 174 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~---~~~lat~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~------~s~dg~~l~s~~~dg~i 174 (473)
.+|...|.+++|+|+ +.+|++|+.|+.|++||+.++. +...+.+|...|.+++ |+|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 479999999999999 6999999999999999999887 7888899999999995 57899999999999999
Q ss_pred EEeeCCCCccccccCCCcC----CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978 175 QCWDPQTGKPSGNPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
++||+.+++.....+..|. ..+.++.|.+ .+++++..+++++.|+.|++||+++++.... ..|...|.+++|++
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN-AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC-CCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEe-ccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 9999988763333333333 3788888543 1334667999999999999999999887544 56888999999997
Q ss_pred ---CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccC
Q 011978 251 ---DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (473)
Q Consensus 251 ---~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
++ .+++++.|+.|++||+++++....+.
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------ 251 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFA------------------------------------------------ 251 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEE------------------------------------------------
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCccccee------------------------------------------------
Confidence 55 68899999999999987643322111
Q ss_pred CCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCCC-------------
Q 011978 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG------------- 392 (473)
Q Consensus 327 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~------------- 392 (473)
.....+|...|.+++|+|+++ +|++|+.||.|++||++.+
T Consensus 252 --------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 252 --------------------------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp --------------------------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred --------------------------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 011235677899999999998 8999999999999998753
Q ss_pred ------ceEEEeeCCccCEEEEEEecCCCEEE-EEeCCCcEEEEECCCCc
Q 011978 393 ------KFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 393 ------~~~~~~~~h~~~v~~v~~sp~g~~l~-s~s~Dg~i~iwd~~~~~ 435 (473)
+.+..+.+|.++|++++|+|++++|+ +++.||.|++||+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 35777889999999999999999998 89999999999998654
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-35 Score=276.30 Aligned_cols=254 Identities=20% Similarity=0.275 Sum_probs=210.9
Q ss_pred CcccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC
Q 011978 107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 107 h~~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~ 181 (473)
|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6788999999999 67999999999999999999998888999999999999999 899999999999999999998
Q ss_pred Ccccccc--CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE------------------------
Q 011978 182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------------------------ 235 (473)
Q Consensus 182 ~~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~------------------------ 235 (473)
++..... +.+|...|.++.|+| ++..+++++.|+.|++||+++++....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 8765432 268999999999987 456899999999999999987654322
Q ss_pred ----ecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeee-eeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 236 ----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 236 ----~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
..+|...|.+++|+ ...+++++.|+.|++||+.++..... +..+..
T Consensus 223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------------- 273 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES---------------------------- 273 (366)
T ss_dssp SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC----------------------------
T ss_pred ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCc----------------------------
Confidence 23489999999999 55899999999999999876543110 000000
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWN 388 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd 388 (473)
.......+.+|...|.+++|+|+ +++|++|+.||.|++||
T Consensus 274 --------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 274 --------------------------------------NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp --------------------------------------CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred --------------------------------------chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 00112234567778999999999 99999999999999999
Q ss_pred CCCCc----eEEEeeCC--ccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 389 GTTGK----FVAVFRGH--VGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 389 ~~~~~----~~~~~~~h--~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
+.+++ ....+.+| .+.|++++|+|++++|++++.||.|++||+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99875 44577777 7899999999999999999999999999985
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-34 Score=277.78 Aligned_cols=278 Identities=18% Similarity=0.134 Sum_probs=223.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEEEc--------------------------------------
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCT-------------------------------------- 147 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~~~-------------------------------------- 147 (473)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999966665 57899999998887 443333
Q ss_pred ----------------CCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCC--CCccccccC-CCcCCcEEEEEeceeccC
Q 011978 148 ----------------GHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPL-SGHKKWITGISWEPVHLN 207 (473)
Q Consensus 148 ----------------~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~--~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 207 (473)
.|...|.+++|+|+|++| ++++.||.|++||+. +++...... ..|...|.++.|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp---- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE---- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT----
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC----
Confidence 234479999999999996 889999999999998 665443221 25678899999987
Q ss_pred CCCceEEEeeCCCcEEEEECCCCeEEE----EecCccccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeec
Q 011978 208 APCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
++.++++++.+|.+++|++..+.... .+.+|...|.+++|+++ + .|++|+.|++|++||+.+++.+..
T Consensus 160 -~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--- 235 (450)
T 2vdu_B 160 -DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK--- 235 (450)
T ss_dssp -TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE---
T ss_pred -CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee---
Confidence 45789999999999999998776443 66789999999999998 7 688999999999999876654322
Q ss_pred cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc
Q 011978 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (473)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 359 (473)
...+|
T Consensus 236 ---------------------------------------------------------------------------~~~~h 240 (450)
T 2vdu_B 236 ---------------------------------------------------------------------------WLFGH 240 (450)
T ss_dssp ---------------------------------------------------------------------------ECCCC
T ss_pred ---------------------------------------------------------------------------eecCC
Confidence 12356
Q ss_pred ccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC-------------------------ccCEEEEEEecCC
Q 011978 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-------------------------VGPVYQISWSADS 414 (473)
Q Consensus 360 ~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h-------------------------~~~v~~v~~sp~g 414 (473)
...|.+++|+ ++++|++|+.|+.|++||+.+++++..+..+ ...|.+++|+|++
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 6789999999 9999999999999999999999988887632 3569999999999
Q ss_pred CEEEEEe-CCCcEEEEEC--CCC---ceeecccccCCCEEEEEEeeCCCEEEEEeC------CCcEEecc
Q 011978 415 RLLLSGS-KDSTLKVWDI--RTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM 472 (473)
Q Consensus 415 ~~l~s~s-~Dg~i~iwd~--~~~---~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~~w~ 472 (473)
++|++++ .|+.|++||+ ..+ +....+.+| ..|.+++|+|++.+++.++. +..|.+|.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 9999999 8999999999 555 566777777 78999999996544444443 45578774
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=287.40 Aligned_cols=281 Identities=14% Similarity=0.223 Sum_probs=202.9
Q ss_pred EECCCCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEECC-CCCeEEEEecCCeEEEeeCCC---Ccccc-cc
Q 011978 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP 188 (473)
Q Consensus 115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~-dg~~l~s~~~dg~i~iwd~~~---~~~~~-~~ 188 (473)
.|+|+++.+++++ .|+. +++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+ +.... ..
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888887765 4874 45666677 89999999999999 999999999999999999876 43221 11
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC---CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~ 265 (473)
..+|...|.++.|.| ++..+++++.||.|++||+. .++....+.+| .+..+.+++++
T Consensus 107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------- 166 (437)
T 3gre_A 107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------- 166 (437)
T ss_dssp EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------------
T ss_pred eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------------
Confidence 226899999999987 45689999999999999994 55555544433 34444443311
Q ss_pred EECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
+...+.++.+.. ......+++++.|+.+++||
T Consensus 167 --------------~~~~~~~~~~~~----------------------------------~~~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 167 --------------KNEYAVRMRAFV----------------------------------NEEKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp --------------SCCCEEEEEEEE----------------------------------CSSCEEEEEEETTSEEEEEE
T ss_pred --------------cccCceEEEEEE----------------------------------cCCCCEEEEEeCCCeEEEEe
Confidence 000001110000 00012344444444444444
Q ss_pred CCCCCCCeeeecC--cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-CCccCEEEEEEe----cCCCEEE
Q 011978 346 PAVSKQPKTRMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQISWS----ADSRLLL 418 (473)
Q Consensus 346 ~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~s----p~g~~l~ 418 (473)
+.... ....+.+ |...|++++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+ |++.+|+
T Consensus 199 ~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 199 IRTLE-RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp TTTCC-EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred CCCCe-eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 43222 1222333 66789999999999999999999999999999999998886 788899999665 4688999
Q ss_pred EEeCCCcEEEEECCCCceeecccc--------------------------cCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 419 SGSKDSTLKVWDIRTQKLKQDLPG--------------------------HADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~~~~~~~--------------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+++.||.|++||+++++....+.+ |...|++++|+ ++++|++++.|+.|++|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 999999999999998876554443 55668899999 789999999999999996
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1e-35 Score=283.07 Aligned_cols=258 Identities=12% Similarity=0.068 Sum_probs=180.2
Q ss_pred ECCCCCeEEEEecCCeEEEeeCCCCccc----cccCCCcCCcEEEEEeceeccC---CCCceEEEeeCCCcEEEEECCCC
Q 011978 158 WSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLN---APCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 158 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~---~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
+++++.+|++++.|++|++||.+++... ...+.+|...|++++|+|.... .++..+++++.|++|+|||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3445678999999999999999887542 2357899999999999985432 25678999999999999999998
Q ss_pred eEEEEecCccccEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 231 KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
.++..+.+|...|.+++|+|++ .|++++.|++|++||+++++.......+.......
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------------- 235 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------------- 235 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC---------------------
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------------
Confidence 8888888899999999999876 58899999999999999887654433221100000
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEEC-CCCcEEEEEECCCcEEEE
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFDKSIKLW 387 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s-p~g~~lasgs~d~~v~lw 387 (473)
..+..... ........+|...+.+++|+ |+++.|++++.|+++++|
T Consensus 236 -----------------------~~s~~~~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 236 -----------------------LLTLNTLP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW 282 (393)
T ss_dssp -----------------------SEEEESGG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred -----------------------EEeccccc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence 00000000 00011234677788899987 799999999999999999
Q ss_pred eCCCCceEEEeeCCccCEEEEEEec--------------------CCCEEEEEeCCCcEEEEECCCCceeecccccCCCE
Q 011978 388 NGTTGKFVAVFRGHVGPVYQISWSA--------------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 447 (473)
Q Consensus 388 d~~~~~~~~~~~~h~~~v~~v~~sp--------------------~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i 447 (473)
|+..++....+..|...+..+.++| ++.++++|+.||+|++||+.+++....+.+|...|
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V 362 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPI 362 (393)
T ss_dssp EC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCE
T ss_pred ECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcE
Confidence 9998877777766666555554443 34467888999999999999988877778899999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEE
Q 011978 448 FAVDWSPDGEKVASGGKDRVLK 469 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~~i~ 469 (473)
.+++|||||++||+++.||.+.
T Consensus 363 ~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp EEEEECTTSSEEEEEESSEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEE
Confidence 9999999999999999988643
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=265.20 Aligned_cols=254 Identities=16% Similarity=0.274 Sum_probs=219.0
Q ss_pred ccccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-----C
Q 011978 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-----G 172 (473)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-----g 172 (473)
......+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...|.+++|+|++++|++++.+ +
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 34556778999999999999999999999999999999999998877776 88899999999999999999999 9
Q ss_pred eEEEeeCCCCcccc----------ccCCCcCC--cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCc
Q 011978 173 ELQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGH 239 (473)
Q Consensus 173 ~i~iwd~~~~~~~~----------~~~~~~~~--~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h 239 (473)
.|++||+..+.... ..+..|.. .+.++.|+| ++..+++++.||.|++||+.+ .+.+..+.+|
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-----KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-----GGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-----CCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence 99999987654211 12234444 788888887 456899999999999999998 7888889999
Q ss_pred cccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 240 ~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...|.+++|++++ .|++++.|+.|++||+.+++.+..+.
T Consensus 218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------------------------------------- 257 (369)
T 3zwl_B 218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------------------------------------- 257 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----------------------------------------
Confidence 9999999999987 58899999999999998876544322
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC--------------cE
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SI 384 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--------------~v 384 (473)
+...+.+++|+|+++++++++.++ .+
T Consensus 258 ----------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 258 ----------------------------------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp ----------------------------------------CSSCEEEEEECSSSSEEEEEECCC-------------CEE
T ss_pred ----------------------------------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCccee
Confidence 123467888999999999999888 89
Q ss_pred EEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 385 KLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 385 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|++..+...
T Consensus 298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 99999999999999999999999999999999999999999999999875543
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=298.37 Aligned_cols=248 Identities=23% Similarity=0.422 Sum_probs=202.4
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCC--CCeEEEEecCCeEEEe
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW 177 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~i~iw 177 (473)
..+.||.+.|++++|+|++++|++|+.||+|+|||+. +......+.+|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999997 44566678899999999999988 8899999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC--C-eE
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VI 254 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l 254 (473)
|+.+++. ..+..+.+|...|.+++|+++ + .+
T Consensus 83 d~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l 116 (753)
T 3jro_A 83 KEENGRW----------------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLL 116 (753)
T ss_dssp EEETTEE----------------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred ECCCCcc----------------------------------------------cccccccCCCCCeEEEEECCCCCCCEE
Confidence 8765421 122234568888999999987 5 68
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++|+.||.|++||++++.....
T Consensus 117 ~sgs~dg~I~vwdl~~~~~~~~---------------------------------------------------------- 138 (753)
T 3jro_A 117 LVASSDGKVSVVEFKENGTTSP---------------------------------------------------------- 138 (753)
T ss_dssp EEEETTSEEEEEECCSSSCCCC----------------------------------------------------------
T ss_pred EEEeCCCcEEEEEeecCCCcce----------------------------------------------------------
Confidence 8999999999999876532110
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-------------CCcEEEEEECCCcEEEEeCCCC----ceEEE
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-------------DGQWVASASFDKSIKLWNGTTG----KFVAV 397 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-------------~g~~lasgs~d~~v~lwd~~~~----~~~~~ 397 (473)
....+|...|.+++|+| ++.+|++|+.||.|++||++++ .....
T Consensus 139 -------------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 139 -------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp -------------------EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred -------------------eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 11223445566666766 6899999999999999999877 55677
Q ss_pred eeCCccCEEEEEEecC---CCEEEEEeCCCcEEEEECCCCc-----eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEE
Q 011978 398 FRGHVGPVYQISWSAD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 469 (473)
Q Consensus 398 ~~~h~~~v~~v~~sp~---g~~l~s~s~Dg~i~iwd~~~~~-----~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 469 (473)
+.+|.++|++++|+|+ +++|++++.||.|++||+.+++ ......+|...|++++|+|+|++|++++.||.|+
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 8899999999999999 8999999999999999998864 3344556888999999999999999999999999
Q ss_pred ecc
Q 011978 470 LWM 472 (473)
Q Consensus 470 ~w~ 472 (473)
+|.
T Consensus 280 vwd 282 (753)
T 3jro_A 280 LWK 282 (753)
T ss_dssp CCB
T ss_pred EEe
Confidence 996
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-33 Score=266.51 Aligned_cols=245 Identities=20% Similarity=0.283 Sum_probs=210.9
Q ss_pred cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEE
Q 011978 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (473)
Q Consensus 147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iw 225 (473)
..|..+|.+++|+|++++|++++.|+.|++||+.+++. ....+.+|...|.++.|.| ++..+++++.|+.|++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-----CCCEEEEEcCCCeEEEE
Confidence 45889999999999999999999999999999988751 2234678999999999987 45689999999999999
Q ss_pred ECCCCeEEE--EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 226 DVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 226 d~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
|+.+++... .+.+|...|.+++|++++ .+++++.|+.|++||+..+......
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------------------- 134 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------------------- 134 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------------------
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------------------
Confidence 998887544 346799999999999887 6889999999999998764321100
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
.....+|...|.+++|+|++++|++|+.|+
T Consensus 135 --------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 135 --------------------------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp --------------------------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred --------------------------------------------------eeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 011124567799999999999999999999
Q ss_pred cEEEEeC------------------CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978 383 SIKLWNG------------------TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444 (473)
Q Consensus 383 ~v~lwd~------------------~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~ 444 (473)
.|++||+ ..++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.+|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 9999995 4678888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 445 DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..|.+++|+|++++|+++ .|+.|++|.
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFPVLFT 271 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred CCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence 999999999999988877 999999996
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-35 Score=277.63 Aligned_cols=259 Identities=10% Similarity=0.149 Sum_probs=210.4
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
.-..+|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|..++|+|.. .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----~l~gh~~~v~~V~FsPdg------------~~~~~~~~~~ 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----DINCNSKNLFHVKEFPLE------------FENKLDFELA 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----CCSSBGGGTEEEEEECCC------------CCCTTTTSCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc----eecCCCccEEEEEECCCC------------CcceEEEEeC
Confidence 3467899999999999999999999999 765554 347899999999998832 3444445543
Q ss_pred CCCeEEEEec-CccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCc-----eEEEEEecccceeeeccc
Q 011978 228 SLRKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAF 300 (473)
Q Consensus 228 ~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~ 300 (473)
+....+. +|...|.+++|+|+|. |++++.||.+++||... ++..+. |.. .+.+++++|+
T Consensus 75 ---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD-------- 140 (588)
T 2j04_A 75 ---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI-------- 140 (588)
T ss_dssp ---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS--------
T ss_pred ---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC--------
Confidence 3222233 5678899999999995 99999999999999644 556666 554 4899999886
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC--C----eeee----cCcccceeEEEECC
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--P----KTRM----TGHQQLVNHVYFSP 370 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~----~~~~----~~~~~~v~~v~~sp 370 (473)
...|++|+.||++++||...... + ...+ .+|..+|.+++|+|
T Consensus 141 ----------------------------G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 141 ----------------------------ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp ----------------------------SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred ----------------------------CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 34699999999999999876532 1 2333 67889999999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCce---EEEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKF---VAVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 446 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~---~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~ 446 (473)
|| +++++.|++|++||+.+++. ..++ .+|...|.+++|+ |+.||+++ |++|++||+.+++......+|.+.
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 99 88899999999999988773 3566 4788999999999 68999997 699999999988774444489999
Q ss_pred EEEEEE--eeCCCEEEEEeCCCcEEecc
Q 011978 447 VFAVDW--SPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 447 i~~l~~--s~d~~~l~s~~~D~~i~~w~ 472 (473)
|+.+.| +||++.|++++.||+ ++|.
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 999999 999999999999999 9985
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.4e-34 Score=269.53 Aligned_cols=246 Identities=12% Similarity=0.159 Sum_probs=190.6
Q ss_pred cccCCcccEEEEEECCCCCeEEEE-----------eCCCeEEEEeCCCCceeEE---------EcCCCCCEEEEEECCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASG-----------SGDTTVRLWDLNTQTPMFK---------CTGHKNWVLCIAWSADG 162 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~-----------s~d~~i~iwd~~~~~~~~~---------~~~~~~~v~~l~~s~dg 162 (473)
.+.+|.+.|.+++++ ++.+++| +.|+++|+|++.+...... ...++..+.+++|||||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467899999888764 4556554 4578899999865432211 12345679999999999
Q ss_pred CeEEE--EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE--EecC
Q 011978 163 KHLVS--GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG 238 (473)
Q Consensus 163 ~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~--~~~~ 238 (473)
++|++ ++.|++|++||+.+++..... .|...|.+++|+| ++.++++++ ++.+++|+..++..+. ...+
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fsp-----dg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFST-----DGKVVAYIT-GSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECT-----TSSEEEEEC-SSCEEEEETTTCCEEEEECCCC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEcc-----CCceEEecc-ceeEEEEEeccCcceeeeecCC
Confidence 99875 447899999999998765432 4777899999987 556777777 4567777777776554 3457
Q ss_pred ccccEEEEEecCCC-eEEEeecCC----eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH
Q 011978 239 HTLAVTCVKWGGDG-VIYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (473)
Q Consensus 239 h~~~v~~~~~~~~~-~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
|...|.+++|++++ .+++++.|+ .+++|++..+.....
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~------------------------------------- 260 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL------------------------------------- 260 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-------------------------------------
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-------------------------------------
Confidence 88899999999988 477888776 567777654321100
Q ss_pred HHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~ 393 (473)
....+.+|...|++++|+|||++||+|+.|++|+|||+++++
T Consensus 261 --------------------------------------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 261 --------------------------------------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp --------------------------------------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred --------------------------------------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 011234567789999999999999999999999999999999
Q ss_pred eEEEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 394 FVAVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 394 ~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
++..+ ++|.++|++|+|||||++|||||.|++|+|||+..
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 98875 78999999999999999999999999999999964
No 101
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2e-33 Score=251.93 Aligned_cols=275 Identities=18% Similarity=0.203 Sum_probs=182.4
Q ss_pred cEEEEEECCCC-C--eEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEe--
Q 011978 110 AVLSVAFSPDG-R--QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCW-- 177 (473)
Q Consensus 110 ~V~~~~~sp~~-~--~lat~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iw-- 177 (473)
.+.++.|-..| + -++++++ .+|++|+..+. +++.....|+.+|..+.|.||-.-|++...- +.|+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 34555564443 2 3555554 69999999888 7788888888888777777754433332211 011111
Q ss_pred eCCCCcc-ccccCCCcCCcEEEEEeceeccCCCCceEEEee---CCCcEEEEEC-CCCeEEEEecCccccEEEEEecC--
Q 011978 178 DPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGG-- 250 (473)
Q Consensus 178 d~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s---~dg~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~~-- 250 (473)
..++... ......+|...+.++ .. .+++..+ .|+.|++|++ ..++.+..+.+|...++.++|++
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l--------~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL--------TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE--------TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred CCCccccccEEEeCCCeEEEEec--------CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 1110000 000001122112111 12 3444443 5999999999 55888888888888888888876
Q ss_pred -CC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 251 -DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 251 -~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
++ .|++++.|++|++||+.+|++++++.+|...+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v-------------------------------------------- 226 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ-------------------------------------------- 226 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------------------------------
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce--------------------------------------------
Confidence 44 68899999999999999999888876543211
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE------------EEEEECCCcEEEEeCCCCceEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW------------VASASFDKSIKLWNGTTGKFVA 396 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~------------lasgs~d~~v~lwd~~~~~~~~ 396 (473)
..+.+++|+|+|.+ +++|+.|++|++||..+++.+.
T Consensus 227 --------------------------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 227 --------------------------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp --------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred --------------------------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence 12334455555554 4788999999999999999877
Q ss_pred Ee-----eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEE-EEEEeeCCCEEEEEeCCCcEEe
Q 011978 397 VF-----RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 397 ~~-----~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
.+ .+|.+.+.+..++ +.++|+++.|++|+|||+.+++.+.++.+|.+.+. .++|||||++|+||+.|++|||
T Consensus 275 v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred EEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 65 4777666555444 88999999999999999999999999999988765 5899999999999999999999
Q ss_pred cc
Q 011978 471 WM 472 (473)
Q Consensus 471 w~ 472 (473)
|+
T Consensus 353 Wd 354 (356)
T 2w18_A 353 YH 354 (356)
T ss_dssp EE
T ss_pred ec
Confidence 96
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=268.09 Aligned_cols=274 Identities=11% Similarity=0.038 Sum_probs=214.4
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
..+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------ 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------ 104 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC------------
Confidence 3455678899999999999999999888776655 456778888887 99999999999998642
Q ss_pred CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-CccccEEEEEecC--CC-eEEEeecCCeEEEEECC
Q 011978 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETT 269 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~--~~-~l~s~~~d~~i~~wd~~ 269 (473)
.+.+||+.+++.+..+. +|...|.+++|++ ++ .+++++.|++|++||++
T Consensus 105 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 105 ---------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp ---------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred ---------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 34567777777555444 7778999999999 76 68889999999999999
Q ss_pred CCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978 270 QGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (473)
Q Consensus 270 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 348 (473)
+++...... .+...+.+++++|+ ...+++|+.|+.|++||+..
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~pd------------------------------------g~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 158 DDSQYIVHSAKSDVEYSSGVLHKD------------------------------------SLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp SSCEEEEECCCSSCCCCEEEECTT------------------------------------SCEEEEECTTSCEEEEESSC
T ss_pred CCcEEEEEecCCCCceEEEEECCC------------------------------------CCEEEEEcCCCEEEEEECCC
Confidence 998866553 34556888888765 23588999999999999987
Q ss_pred CCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC---CccCEE--EEEEecCCCEEEEEeC
Q 011978 349 SKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVY--QISWSADSRLLLSGSK 422 (473)
Q Consensus 349 ~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~---h~~~v~--~v~~sp~g~~l~s~s~ 422 (473)
.......+.. |...|.+++|+|+|.+|++++. +.|++||+++++.+..+.. |...+. +++|+|+|++|++++.
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 7665355666 9999999999999999999995 5999999998876555443 444444 6999999999999998
Q ss_pred -CCcEEEEECCCCceeecccccCCCEEEEEEee---CCCEEEEEeCCCcEEecc
Q 011978 423 -DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP---DGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 423 -Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~~w~ 472 (473)
|+.|++|++......... ..+..+.|++ +.+.+++++.|+.+.++.
T Consensus 281 ~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 281 ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 999999999664432222 4567788888 888999999999888763
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=251.58 Aligned_cols=248 Identities=20% Similarity=0.369 Sum_probs=210.9
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~i 176 (473)
....+.+|...|.+++|+|++++|++++.|+.|++|++... .+...+.+|...|.+++| ++++|++++.||.|++
T Consensus 51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~ 128 (313)
T 3odt_A 51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKV 128 (313)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence 44566789999999999999999999999999999998654 456677899999999999 5789999999999999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-ccccEEEEEecCCCeEE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKWGGDGVIY 255 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~ 255 (473)
|| .++. ...+..|...+.++.|.|. +...+++++.|+.+++|| .++....+.. |...+.+++|++++.++
T Consensus 129 ~d--~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (313)
T 3odt_A 129 WK--EGSL-VYNLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199 (313)
T ss_dssp EE--TTEE-EEEEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEE
T ss_pred Ec--CCcE-EEecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEE
Confidence 99 3332 2346778999999998873 346899999999999999 5566666766 89999999999998999
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+++.|+.|++||+++++.+..+.
T Consensus 200 ~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------------- 222 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDVLRTYE--------------------------------------------------------- 222 (313)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE---------------------------------------------------------
T ss_pred EccCCCeEEEEECCchhhhhhhh---------------------------------------------------------
Confidence 99999999999998766544332
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
+|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++
T Consensus 223 ----------------------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 223 ----------------------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp ----------------------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ----------------------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 345568899999999 589999999999999999999999999999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCceeec
Q 011978 416 LLLSGSKDSTLKVWDIRTQKLKQD 439 (473)
Q Consensus 416 ~l~s~s~Dg~i~iwd~~~~~~~~~ 439 (473)
+++++.||.|++||+.+++....
T Consensus 280 -~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 280 -IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -EEEEETTSCEEEEESCGGGCCC-
T ss_pred -EEEEeCCCcEEEEeCCCCceeeh
Confidence 56789999999999998766543
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=253.20 Aligned_cols=258 Identities=24% Similarity=0.424 Sum_probs=210.8
Q ss_pred eeEEEeecc--ccccc--ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE
Q 011978 90 AVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165 (473)
Q Consensus 90 ~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 165 (473)
..++++... ++... +.+|...|.+++|+|++++||+|+.|++|++||+++++.+..+.+|...+.++.+ ++..+
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l 122 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYIL 122 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEE
Confidence 345555432 33333 3578889999999999999999999999999999999999999999998887665 56799
Q ss_pred EEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE----EEEecCccc
Q 011978 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHTL 241 (473)
Q Consensus 166 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~----~~~~~~h~~ 241 (473)
++++.++.+++|+...+......+.+|...+..+.+.+ .+..+++++.|+.|++||+++++. ......|..
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 99999999999999887666566788999999988776 456899999999999999987642 344567778
Q ss_pred cEEEEEecCCC--e--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978 242 AVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (473)
Q Consensus 242 ~v~~~~~~~~~--~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.|.++.+.+++ . +++++.+++|++||..........
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---------------------------------------- 237 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------------------------------------- 237 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----------------------------------------
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----------------------------------------
Confidence 89999888754 2 345678888999987654432211
Q ss_pred HhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE--CCCcEEEEeCCCCceE
Q 011978 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFV 395 (473)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs--~d~~v~lwd~~~~~~~ 395 (473)
.+...+..++|+|+++.+++++ .|+.|++||+++++++
T Consensus 238 ----------------------------------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 238 ----------------------------------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp ----------------------------------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ----------------------------------------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 1234577788999998887765 7999999999999999
Q ss_pred EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 396 AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 396 ~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
..+++|.+.|++++|+|||++|||||.||+|+|||+...
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999999999999999999998753
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.1e-33 Score=265.38 Aligned_cols=247 Identities=19% Similarity=0.298 Sum_probs=201.2
Q ss_pred CCCceeEEEcCCCCCEEEEEECCCC-CeEEEEecCCeEEEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEE
Q 011978 138 NTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVS 215 (473)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s 215 (473)
........+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++..... ..+|...|.++.|+|. +...+++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s 136 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQLFV 136 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEEEEE
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCEEEE
Confidence 3344455678899999999999999 89999999999999999987654332 3479999999999872 2358999
Q ss_pred eeCCCcEEEEECCCCeEEEEecC---ccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecc
Q 011978 216 ASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (473)
Q Consensus 216 ~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 291 (473)
++.|+.|++||+.. ..+..+.. |...|.+++|++++ .+++++.|+.|++||++ ++.+..
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--------------- 199 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFK--------------- 199 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEE---------------
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEE---------------
Confidence 99999999999986 44444443 44789999999887 58899999999999973 333222
Q ss_pred cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC
Q 011978 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 371 (473)
+.+|...|.+++|+|+
T Consensus 200 ----------------------------------------------------------------~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 200 ----------------------------------------------------------------EKLHKAKVTHAEFNPR 215 (383)
T ss_dssp ----------------------------------------------------------------EECSSSCEEEEEECSS
T ss_pred ----------------------------------------------------------------eccCCCcEEEEEECCC
Confidence 2245667899999999
Q ss_pred Cc-EEEEEECCCcEEEEeCCC----CceEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeecccccC-
Q 011978 372 GQ-WVASASFDKSIKLWNGTT----GKFVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA- 444 (473)
Q Consensus 372 g~-~lasgs~d~~v~lwd~~~----~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~- 444 (473)
++ +|++|+.|+.|++||+++ +.++..+ +|.+.|.+++|+| ++++|++++.|+.|++||+++++....+.+|.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 99 999999999999999987 5666666 6999999999999 99999999999999999999877655555442
Q ss_pred ----------------CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 445 ----------------DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 445 ----------------~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+..++|+||+++ +++.|+.|++|+
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 34556778888877 888999999997
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=273.90 Aligned_cols=248 Identities=16% Similarity=0.355 Sum_probs=199.5
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc----------ccccCCCcC------------CcEEEEEeceec
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH 205 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~------------~~v~~i~~~~~~ 205 (473)
.+.+.|.+++|+|+|++|++|+.||.|++||+.+++. ....+.+|. ..|.++.|.|..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3568899999999999999999999999999987652 233466887 889999998842
Q ss_pred cCCCCceEEEeeCCCcEEEEECCCCeEE----------------------------------------EEecCccccEEE
Q 011978 206 LNAPCRRFVSASKDGDARIWDVSLRKCV----------------------------------------ICLSGHTLAVTC 245 (473)
Q Consensus 206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~----------------------------------------~~~~~h~~~v~~ 245 (473)
....+++++.|++|++||+..+... ....+|...|.+
T Consensus 106 ---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 106 ---NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp ---SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred ---CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 1158999999999999998765432 114689999999
Q ss_pred EEecCCCe-EEEeecCCeEEEEECCCC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 246 VKWGGDGV-IYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 246 ~~~~~~~~-l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
++|++++. +++| .|+.|++||+.++ +.+..+
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---------------------------------------------- 215 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIV---------------------------------------------- 215 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE----------------------------------------------
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeee----------------------------------------------
Confidence 99999884 6666 8999999998742 221111
Q ss_pred ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEECCCcEEEEeCCCCce----EEEe
Q 011978 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF----VAVF 398 (473)
Q Consensus 324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs~d~~v~lwd~~~~~~----~~~~ 398 (473)
+.. ...+.+|...|.+++|+|++ ++|++|+.||.|++||+++++. +..+
T Consensus 216 ---------------------~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 216 ---------------------DIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp ---------------------ECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred ---------------------ecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 000 01244677889999999998 9999999999999999999886 7888
Q ss_pred eCCcc------------CEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeecccccCCC---------------EEEE
Q 011978 399 RGHVG------------PVYQISWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADE---------------VFAV 450 (473)
Q Consensus 399 ~~h~~------------~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~l 450 (473)
.+|.. .|.+++|+|+|++|++++. +.|++||++. ++....+.+|... ++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEE
Confidence 88876 8999999999999999998 9999999987 7777788877531 3459
Q ss_pred EEeeCCCEEEEEeCCCcEEecc
Q 011978 451 DWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 451 ~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|+|++++|++++.|+.|++|+
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEE
T ss_pred EECCCCCEEEEeccCCEEEEEE
Confidence 9999999999999999999996
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.1e-33 Score=270.62 Aligned_cols=250 Identities=22% Similarity=0.443 Sum_probs=212.1
Q ss_pred cccCCcccEEEEEECCC-CCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCEEEEEECCCCC-eEEEEec
Q 011978 103 TIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSK 170 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~-~~~lat~s~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~s~dg~-~l~s~~~ 170 (473)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+ ..+...+.+|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34679999999999998 67899999999999999976 566778889999999999999998 9999999
Q ss_pred CCeEEEeeCCCCccc------cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC---eEEEEecCccc
Q 011978 171 AGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTL 241 (473)
Q Consensus 171 dg~i~iwd~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~~~h~~ 241 (473)
||.|++|++.++... ...+.+|...|.++.|+|. ....|++++.|+.|++||++++ +.+..+.+|..
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999874321 2335689999999999883 2458999999999999999976 56667779999
Q ss_pred cEEEEEecCCC--eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHh
Q 011978 242 AVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (473)
Q Consensus 242 ~v~~~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
.|++++|++++ .+++|+.||.|++||+++...
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------------------------------------- 312 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------------------------------------- 312 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------------------------------------------
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------------------------------------------
Confidence 99999999876 478999999999999875321
Q ss_pred hhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCC-------
Q 011978 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT------- 391 (473)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~------- 391 (473)
+...+.+|...|.+++|+|+++ +|++++.|+.|++||+..
T Consensus 313 --------------------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 313 --------------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp --------------------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred --------------------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 1122334667799999999985 799999999999999986
Q ss_pred -------CceEEEeeCCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCC
Q 011978 392 -------GKFVAVFRGHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 392 -------~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~ 434 (473)
.+.+..+.+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 367788889999999999999999 8999999999999998764
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.6e-33 Score=268.20 Aligned_cols=246 Identities=22% Similarity=0.411 Sum_probs=210.4
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC----------CeEEEEecCccccEEEEEecCCC--eEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIY 255 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (473)
....|...|+++.|.|. ....+++++.||.|++||+.. ...+..+.+|...|.+++|++++ .|+
T Consensus 123 ~~~~h~~~v~~l~~~p~----~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ----NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEESSCCSEEEEETT----EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred EEEcCCCcEEEEEECCC----CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 34678889999999873 235899999999999999986 56777888999999999999875 689
Q ss_pred EeecCCeEEEEECCCCce-------eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 256 TGSQDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
+|+.||.|++||+.++.. ...+..|...|.++++++. .
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-----------------------------------~ 243 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-----------------------------------H 243 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-----------------------------------C
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-----------------------------------C
Confidence 999999999999987422 3456678888999988763 1
Q ss_pred CceEEEecCCceEEEEeCCCCC--CCeeeecCcccceeEEEECCCCc-EEEEEECCCcEEEEeCCC-CceEEEeeCCccC
Q 011978 329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT-GKFVAVFRGHVGP 404 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~-~~~~~~~~~h~~~ 404 (473)
...+++++.|+.|++||+.... .....+..|...|++++|+|+++ +|++|+.||.|++||+++ ++.+..+.+|.+.
T Consensus 244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 3468899999999999988653 44556678999999999999987 799999999999999998 5678889999999
Q ss_pred EEEEEEecCCC-EEEEEeCCCcEEEEECCC--------------CceeecccccCCCEEEEEEeeCCC-EEEEEeCCCcE
Q 011978 405 VYQISWSADSR-LLLSGSKDSTLKVWDIRT--------------QKLKQDLPGHADEVFAVDWSPDGE-KVASGGKDRVL 468 (473)
Q Consensus 405 v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~~D~~i 468 (473)
|.+++|+|++. +|++++.||.|+|||+.. .+.+..+.+|...|++++|+|+++ +|++++.|+.|
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 99999999985 699999999999999986 255667788999999999999999 89999999999
Q ss_pred Eecc
Q 011978 469 KLWM 472 (473)
Q Consensus 469 ~~w~ 472 (473)
++|.
T Consensus 404 ~iw~ 407 (430)
T 2xyi_A 404 QVWQ 407 (430)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 9996
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.3e-32 Score=259.55 Aligned_cols=318 Identities=12% Similarity=0.082 Sum_probs=246.0
Q ss_pred cccEEEEE---ECCCCCeEEEE--------------eCCCeEEEEe--CCCC--ceeEEEcCCCCCEEEEEECCCCCeEE
Q 011978 108 TEAVLSVA---FSPDGRQLASG--------------SGDTTVRLWD--LNTQ--TPMFKCTGHKNWVLCIAWSADGKHLV 166 (473)
Q Consensus 108 ~~~V~~~~---~sp~~~~lat~--------------s~d~~i~iwd--~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~ 166 (473)
...+..++ |+|++..++.. +.++.++||. ..++ ..+..+..+ ..+.+++|+|++..++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEE
Confidence 34566667 77776665533 2333234554 4334 344444444 3466999999777788
Q ss_pred EEecCCeEEEeeCCCCccccc----cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc
Q 011978 167 SGSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (473)
Q Consensus 167 s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 242 (473)
+++.++.|++||+.+++.... .+.+|...+.++.|.| ++..+++++.|+.|++||+.+++.+..+..|...
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~ 213 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW 213 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence 888899999999998875532 2357888999999866 4568899999999999999999999988899999
Q ss_pred EEEEEecCCC-eE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhh
Q 011978 243 VTCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (473)
Q Consensus 243 v~~~~~~~~~-~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
+.+++|++++ .+ ++++.|+.|++||+.+++.+..+..+. .+..++++++.
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g--------------------------- 265 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDG--------------------------- 265 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTS---------------------------
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCC---------------------------
Confidence 9999999987 34 455689999999999998887776644 47777776653
Q ss_pred hhcccCCCCceEEEec--------CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE-EEEEECCCcEEEEeCCC
Q 011978 321 YNKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTT 391 (473)
Q Consensus 321 ~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-lasgs~d~~v~lwd~~~ 391 (473)
..+++++ .|+.+++||+...+ ......|...+.+++|+|++++ +++++.|+.|++||..+
T Consensus 266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp ---------SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred ---------CEEEEEECCCCccccCCCeEEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 2344444 58899999986543 2223355567889999999975 46668899999999999
Q ss_pred CceEEEeeCCccCEEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCceeecccccCCCEEEEEEeeCC
Q 011978 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSK---------------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 456 (473)
Q Consensus 392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~ 456 (473)
++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++....+.. ...+.+++|+|||
T Consensus 335 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg 412 (433)
T 3bws_A 335 KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN 412 (433)
T ss_dssp TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC
Confidence 98888776 6678999999999999888876 57999999999988877765 4579999999999
Q ss_pred CEEEEEeC-CCcEEecc
Q 011978 457 EKVASGGK-DRVLKLWM 472 (473)
Q Consensus 457 ~~l~s~~~-D~~i~~w~ 472 (473)
++|++++. |+.|++|.
T Consensus 413 ~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 413 RYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEE
Confidence 99988875 99999996
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.8e-33 Score=268.08 Aligned_cols=259 Identities=29% Similarity=0.556 Sum_probs=207.9
Q ss_pred cccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
.+...+.+|...|.+++| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|++ ..|++|+.||.|++||
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWD 239 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEe
Confidence 455678899999999999 789999999999999999999999999999999999999974 5999999999999999
Q ss_pred CCCCcccc--ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEE
Q 011978 179 PQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256 (473)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s 256 (473)
+.++.... ..+.+|...|.++.|. +..+++++.||.|++||+++++++..+.+|...|.++.++ +..+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~ 311 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVS 311 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEE
T ss_pred CCCCCCceeeeEecCCCCcEEEEEeC-------CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEE
Confidence 98876432 4567899999999883 3689999999999999999999999999999999999996 458999
Q ss_pred eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
|+.||.|++||+++++.+..+.
T Consensus 312 g~~dg~i~iwd~~~~~~~~~~~---------------------------------------------------------- 333 (435)
T 1p22_A 312 GSSDNTIRLWDIECGACLRVLE---------------------------------------------------------- 333 (435)
T ss_dssp EETTSCEEEEETTTCCEEEEEC----------------------------------------------------------
T ss_pred EeCCCeEEEEECCCCCEEEEEe----------------------------------------------------------
Confidence 9999999999998876654443
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc---------eEEEeeCCccCEEE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK---------FVAVFRGHVGPVYQ 407 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~---------~~~~~~~h~~~v~~ 407 (473)
+|...|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+|.+.|.+
T Consensus 334 ---------------------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 334 ---------------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp ---------------------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred ---------------------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 34445677777 68899999999999999987665 78889999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978 408 ISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 453 (473)
Q Consensus 408 v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 453 (473)
++| ++++|++++.||+|++||+........... ..+..++.|.
T Consensus 391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 433 (435)
T 1p22_A 391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYI 433 (435)
T ss_dssp EEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeee
Confidence 999 788999999999999999987654433322 2334444444
No 111
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-33 Score=271.60 Aligned_cols=268 Identities=19% Similarity=0.259 Sum_probs=198.1
Q ss_pred cccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEe
Q 011978 101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iw 177 (473)
...+.||.+.|++|+|+| ++.+|++|+.||+|++||++++....... .+...+.+++|+|++++|++|+.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 345679999999999998 68999999999999999998765433333 334568899999999999999999999999
Q ss_pred eCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE---EecCccccEEEEEecCCC-e
Q 011978 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTLAVTCVKWGGDG-V 253 (473)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~-~ 253 (473)
|++... . ..+.+|...|.++.|+|.. ...+++++.|+.|++||++..+... ...+|...|++++|++++ .
T Consensus 237 d~~~~~-~-~~~~~h~~~v~~v~~~p~~----~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 237 NMDGKE-L-WNLRMHKKKVTHVALNPCC----DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp ESSSCB-C-CCSBCCSSCEEEEEECTTC----SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred ccCcce-e-EEEecccceEEeeeecCCC----ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence 986543 2 3577899999999998742 2478899999999999998765432 335799999999999987 6
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
|++++.|++|++||+.++.....+..|...... .. ..+
T Consensus 311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~ 348 (435)
T 4e54_B 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ-------------------HL-----------------------TPI 348 (435)
T ss_dssp EEEEESSSCEEEEESSSSSSEEEECCCCCCCCS-------------------SS-----------------------CCC
T ss_pred eEEEcCCCEEEEEECCCCccceEEecccccccc-------------------cc-----------------------eeE
Confidence 899999999999999988776655443211000 00 000
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEee-CCccCEEEE-EE
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFR-GHVGPVYQI-SW 410 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~-~h~~~v~~v-~~ 410 (473)
-..|. ....+..+++++++..+++++ .++.|++||..+++.+..+. +|...|.++ +|
T Consensus 349 -------~~~~~-------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f 408 (435)
T 4e54_B 349 -------KAAWH-------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF 408 (435)
T ss_dssp -------BCEEC-------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE
T ss_pred -------EEEEc-------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE
Confidence 00010 111233445556665554443 34689999999999887764 688888887 69
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
+|+|++||+|+ |++|+|||+++++..
T Consensus 409 spdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 409 NPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 99999999876 889999999987653
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-32 Score=258.65 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=208.2
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCC
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQT 181 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~ 181 (473)
++.+|.+.|++++|+|||++||+|+.|+ ++|||+.+......... ..+..+++.++++.+ ++++.|++|++||..+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4577999999999999999999988765 78999987765544332 247788898888877 5678889999999999
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC-eEEEEecCccccEEEEEecCCCeEEE--ee
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT--GS 258 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s--~~ 258 (473)
++..... .+...|.++.+++. .++. ..|+.|++||+.++ +.+..+.. ....+++++ ..++. |+
T Consensus 91 ~~~~~~~--~~~~~v~~v~~~~~-------~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~ 156 (355)
T 3vu4_A 91 KQDVSRI--KVDAPVKDLFLSRE-------FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEF 156 (355)
T ss_dssp TEEEEEE--ECSSCEEEEEECSS-------EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESS
T ss_pred CcEEEEE--ECCCceEEEEEcCC-------EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCC
Confidence 8765432 35668999988752 3443 35889999999887 55444433 233344555 44444 78
Q ss_pred cCCeEEEEECCCCc----------------eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhh
Q 011978 259 QDCTIKVWETTQGK----------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (473)
Q Consensus 259 ~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
.||.|++||+.+++ .+..+.+|...|.+++++++
T Consensus 157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------------------------------ 206 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------------------------------ 206 (355)
T ss_dssp CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------------------------------
T ss_pred cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------------------------------
Confidence 99999999999865 26778999999999999876
Q ss_pred cccCCCCceEEEecCCce-EEEEeCCCCCCCeeeecC-cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEe
Q 011978 323 KIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVF 398 (473)
Q Consensus 323 ~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~ 398 (473)
...+++++.|++ +++||............+ |...|.+++|+|+|++|++++.|++|++||+..+.. ...+
T Consensus 207 ------g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~ 280 (355)
T 3vu4_A 207 ------SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHAL 280 (355)
T ss_dssp ------SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEET
T ss_pred ------CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccc
Confidence 246999999998 999998765443333325 999999999999999999999999999999876531 1111
Q ss_pred e---------------------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 399 R---------------------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 399 ~---------------------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
. .+......++|+|||++|++++.||.+++|++..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 281 KGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp TTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1 11223467899999999999999999999998653
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.8e-32 Score=261.84 Aligned_cols=253 Identities=20% Similarity=0.299 Sum_probs=209.1
Q ss_pred ccccccCCcccEEEEEECC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEECCCC-CeEEEEec
Q 011978 100 CSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSK 170 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg-~~l~s~~~ 170 (473)
....+.+|.+.|.+++|+| ++++||+|+.||+|+|||+.++ .++..+.+|...|.+++|+|++ .+|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3456789999999999999 9999999999999999999887 5677888999999999999998 69999999
Q ss_pred CCeEEEeeCCCCccccccC-CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCcccc-EEEEE
Q 011978 171 AGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLA-VTCVK 247 (473)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~-v~~~~ 247 (473)
||.|++||+.+++...... .+|...|.++.|+| ++..+++++.|+.|++||+++++.+..+ .+|... +.++.
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-----DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECC-----CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 9999999999887654432 78999999999987 4568999999999999999999999888 788776 88999
Q ss_pred ecCCCe-EEEe---ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 248 WGGDGV-IYTG---SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 248 ~~~~~~-l~s~---~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
|++++. +++| +.|+.|++||+++++....
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~----------------------------------------------- 260 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLS----------------------------------------------- 260 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE-----------------------------------------------
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCce-----------------------------------------------
Confidence 999885 5556 5899999999876432100
Q ss_pred ccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCCCce-EEEeeC-
Q 011978 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKF-VAVFRG- 400 (473)
Q Consensus 324 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~~~~-~~~~~~- 400 (473)
.....|...+.+++|+|++++|++ |+.|+.|++||+.+++. +..+..
T Consensus 261 ------------------------------~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 261 ------------------------------LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp ------------------------------EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred ------------------------------EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 001123446788999999999975 55799999999998873 444444
Q ss_pred -CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978 401 -HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 401 -h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
|.++|.+++|+|++.++++ .|+.+++|++.+++.
T Consensus 311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 4589999999999998874 567999999987543
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.4e-30 Score=247.68 Aligned_cols=304 Identities=13% Similarity=0.145 Sum_probs=235.5
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeE-EEEecCCeEEEeeCCCCccccccCCCcCCcEEEE
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i 199 (473)
..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.... +..+ ..+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~~-~~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAG-SSPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECS-SSEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EECC-CCccce
Confidence 357888899999999999998887777665 48999999999987 5677899999999998876543 2223 378999
Q ss_pred EeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-E-EEeecCCeEEEEECCCCceeee
Q 011978 200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 200 ~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~i~~wd~~~~~~~~~ 276 (473)
.|+| ++.++ ++++.++.|++||+.+++.+..+..+. .+.+++|++++. + ++++.|+.|++||+.+++.+..
T Consensus 80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 9887 34455 556677999999999999888776554 689999999874 4 6888899999999999988887
Q ss_pred eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (473)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 356 (473)
+..+.. +..++++++. ...+++++.++.+++||+..... ...
T Consensus 154 ~~~~~~-~~~~~~~~dg-----------------------------------~~l~~~~~~~~~v~~~d~~~~~~--~~~ 195 (391)
T 1l0q_A 154 VSVGRS-PKGIAVTPDG-----------------------------------TKVYVANFDSMSISVIDTVTNSV--IDT 195 (391)
T ss_dssp EECCSS-EEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEETTTTEE--EEE
T ss_pred EecCCC-cceEEECCCC-----------------------------------CEEEEEeCCCCEEEEEECCCCeE--EEE
Confidence 766543 4666666542 12346788899999999865432 222
Q ss_pred cCcccceeEEEECCCCcEEEEEE---CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE-EEEeCCCcEEEEECC
Q 011978 357 TGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL-LSGSKDSTLKVWDIR 432 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs---~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l-~s~s~Dg~i~iwd~~ 432 (473)
..+...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 33456789999999999999888 68999999999999988888765 57899999999977 677889999999999
Q ss_pred CCceeecccccCCCEE---------------EEEEeeCC----------CEEEEEeCCCcEEecc
Q 011978 433 TQKLKQDLPGHADEVF---------------AVDWSPDG----------EKVASGGKDRVLKLWM 472 (473)
Q Consensus 433 ~~~~~~~~~~h~~~i~---------------~l~~s~d~----------~~l~s~~~D~~i~~w~ 472 (473)
+++....+..|..+.. ...|+.+. ..+.+.+.|...++|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 339 (391)
T 1l0q_A 275 TNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWD 339 (391)
T ss_dssp TTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEE
T ss_pred CCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEE
Confidence 9888777765543311 11233322 3467777888999996
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7e-32 Score=251.80 Aligned_cols=247 Identities=12% Similarity=0.063 Sum_probs=201.6
Q ss_pred cCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcc--ccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcEE
Q 011978 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDAR 223 (473)
Q Consensus 147 ~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i~ 223 (473)
.+|...|.+++|+|++++|++++.||.|++|++.+++. ......+|...|.++.|.| ++. .+++++.||.|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeEE
Confidence 47999999999999999999999999999999987761 1123458899999999988 456 799999999999
Q ss_pred EEEC-CCCeEEEEecC--ccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 224 IWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 224 iwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
+||+ ..++. ..+.+ |...|.+++|++...+++++.|+.|++||+++...-. +.
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~~--------------- 138 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV--------IA--------------- 138 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC--------EE---------------
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc--------cc---------------
Confidence 9999 77755 66778 9999999999985579999999999999976410000 00
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~ 380 (473)
.. ..+...+ .|...+.+++|+|++ +++++.
T Consensus 139 -----------------------------------------~~------~~~~~~~-~~~~~v~~~~~~~~~--l~~~~~ 168 (342)
T 1yfq_A 139 -----------------------------------------VK------NLNSNNT-KVKNKIFTMDTNSSR--LIVGMN 168 (342)
T ss_dssp -----------------------------------------EE------ESCSSSS-SSCCCEEEEEECSSE--EEEEES
T ss_pred -----------------------------------------cc------CCeeeEE-eeCCceEEEEecCCc--EEEEeC
Confidence 00 0000011 155678999999987 999999
Q ss_pred CCcEEEEeCCC-Cc--eEEEeeCCccCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC------ceeecccccCC-----
Q 011978 381 DKSIKLWNGTT-GK--FVAVFRGHVGPVYQISWSA-DSRLLLSGSKDSTLKVWDIRTQ------KLKQDLPGHAD----- 445 (473)
Q Consensus 381 d~~v~lwd~~~-~~--~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~h~~----- 445 (473)
|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.|++|++... +....+.+|..
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence 99999999988 54 3345557888999999999 9999999999999999999876 66667777755
Q ss_pred ----CEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 446 ----EVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 446 ----~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.|.+++|+|++++|++++.|+.|++|+
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 999999999999999999999999996
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.7e-32 Score=259.51 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=180.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECC--------CCCeEEEEe
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSA--------DGKHLVSGS 169 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~--------dg~~l~s~~ 169 (473)
...+|...+....+++++.+||+|+.|++|+|||..++.... .+.+|.+.|.+++|+| ||++|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344566666667777888899999999999999998875432 2568999999999998 889999999
Q ss_pred cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE--------------
Q 011978 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-------------- 235 (473)
Q Consensus 170 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-------------- 235 (473)
.|++|++||+.++.... .+.+|...+.++.|+|.. ..++++++.|++|++||+++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p~~----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRPSN----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp TTSEEEEEEEETTEEEE-EEEECSSCEEEEEEETTE----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred CCCeEEEEECCCCceee-eecCCCCCcEEEEECCCC----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999999998776543 345788899999999842 34799999999999999987654322
Q ss_pred -----------ecCccccEEEEEec-CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 236 -----------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 236 -----------~~~h~~~v~~~~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
..+|...+.++.|. +++ .+++++.|+++++||+..++....+..+...+..+.+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 309 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV--------- 309 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE---------
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc---------
Confidence 23677788888886 566 68899999999999999887766665554444433332221
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC--CCcEEEEEEC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASF 380 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~lasgs~ 380 (473)
.....+...+ ...++| ++.++++|+.
T Consensus 310 ---------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 310 ---------------------------------------------------QGISLFPSLL-GACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp ---------------------------------------------------EEECSSCCSS-CCEECSSCTTEEEEEETT
T ss_pred ---------------------------------------------------ccccccCcce-eEEEccCCCCEEEEEECC
Confidence 0011111112 223443 5567888899
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
||.|++||..+++....+.+|..+|.+|+|||||++||+++.|| +.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999998888888999999999999999999999776 6666553
No 117
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.4e-31 Score=242.07 Aligned_cols=204 Identities=27% Similarity=0.357 Sum_probs=176.2
Q ss_pred EecCccccEEEEEecCCC-eEEEeecCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 235 CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 235 ~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
.+.+|...|.+++|++++ .|++|+.|++|++||+.. ++.+..+.+|...|.++++++..
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------------------ 65 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------------ 65 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------------------
Confidence 467899999999999988 689999999999999974 46778899999999999886420
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC-CCeeeecCcccceeEEEECCC--CcEEEEEECCCcEEEEe
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWN 388 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~--g~~lasgs~d~~v~lwd 388 (473)
....|++++.|+++++||..... .....+.+|...|.+++|+|+ |.+|++|+.|+.|++||
T Consensus 66 ----------------~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd 129 (297)
T 2pm7_B 66 ----------------FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129 (297)
T ss_dssp ----------------GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred ----------------cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence 12468999999999999987543 234556789999999999997 89999999999999999
Q ss_pred CCCCc--eEEEeeCCccCEEEEEEecC-------------CCEEEEEeCCCcEEEEECCCCc----eeecccccCCCEEE
Q 011978 389 GTTGK--FVAVFRGHVGPVYQISWSAD-------------SRLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFA 449 (473)
Q Consensus 389 ~~~~~--~~~~~~~h~~~v~~v~~sp~-------------g~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~h~~~i~~ 449 (473)
++++. ....+.+|...|.+++|+|+ +++|++|+.|++|++||+++++ ....+.+|...|.+
T Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 98763 24667899999999999997 5799999999999999998765 55678899999999
Q ss_pred EEEeeCC---CEEEEEeCCCcEEecc
Q 011978 450 VDWSPDG---EKVASGGKDRVLKLWM 472 (473)
Q Consensus 450 l~~s~d~---~~l~s~~~D~~i~~w~ 472 (473)
++|+|++ ++|++++.|++|+||+
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred EEECCCCCCceEEEEEECCCcEEEEE
Confidence 9999995 8999999999999995
No 118
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.5e-30 Score=239.88 Aligned_cols=216 Identities=24% Similarity=0.335 Sum_probs=175.3
Q ss_pred ccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCCe
Q 011978 100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGE 173 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg~ 173 (473)
+...+.||.+.|.+++|+| ++++|++|+.|++|++||+.++. +...+.+|...|.+++|+|+ +.+|++|+.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 3456789999999999986 48999999999999999998763 55667899999999999998 789999999999
Q ss_pred EEEeeCCCCcc--ccccCCCcCCcEEEEEeceeccC------------CCCceEEEeeCCCcEEEEECCCC---eEEEEe
Q 011978 174 LQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLN------------APCRRFVSASKDGDARIWDVSLR---KCVICL 236 (473)
Q Consensus 174 i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~------------~~~~~~~s~s~dg~i~iwd~~~~---~~~~~~ 236 (473)
|++||+.++.. ....+.+|...+.++.|.|.... ....+|++|+.|++|++||++.. +++..+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 99999987532 23456789999999999885311 11358999999999999999755 567788
Q ss_pred cCccccEEEEEecCCC-----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 237 SGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 237 ~~h~~~v~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
.+|...|.+++|++++ .|++++.|++|++||+.+.....
T Consensus 209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------------------------------ 252 (316)
T 3bg1_A 209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------------------------------ 252 (316)
T ss_dssp BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------------------------------
T ss_pred ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------------------------------
Confidence 9999999999999874 68899999999999976521000
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
.....+..|...|.+++|+|++++||+|+.|++|++|+..
T Consensus 253 ---------------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 ---------------------------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ---------------------------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ---------------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0001122355679999999999999999999999999975
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=9.7e-30 Score=245.40 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=223.7
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeE-----EEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
..+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|+|+++.+++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 345689999977778888889999999999887665 334788899999999999999999999999999998876
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEee---
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS--- 258 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~--- 258 (473)
... .+..|...+.++.|+| ++..+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++ .+++++
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 203 YKA-TVDLTGKWSKILLYDP-----IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp EEE-EEECSSSSEEEEEEET-----TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred EEE-EEcCCCCCeeEEEEcC-----CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence 543 3457888899999987 33445 56668999999999999988877665 458999999988 577766
Q ss_pred -----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 259 -----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 259 -----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
.|+.|++||+.+++.+..+. +...+..++++++. ...++
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g-----------------------------------~~l~~ 319 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE-----------------------------------NKIYV 319 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST-----------------------------------TEEEE
T ss_pred CccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC-----------------------------------CEEEE
Confidence 48899999999987766552 33356666665542 12467
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC---------------CCcEEEEeCCCCceEEEe
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~---------------d~~v~lwd~~~~~~~~~~ 398 (473)
+++.|+.+++||....+. .. ...+...+.+++|+|+|++|++++. ||.|++||..+++.+..+
T Consensus 320 ~~~~~~~v~v~d~~~~~~-~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKV-QK-SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EETTTTEEEEEETTTTEE-EE-EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEECCCCcE-EE-EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 779999999999874332 22 2235677899999999999998876 579999999999998888
Q ss_pred eCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCC
Q 011978 399 RGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRT 433 (473)
Q Consensus 399 ~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~ 433 (473)
..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 398 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 398 EAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 764 57999999999999988875 99999999863
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.2e-31 Score=246.71 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=179.1
Q ss_pred CCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECC---------CCceeeeee-
Q 011978 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT---------QGKLIRELK- 278 (473)
Q Consensus 209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~---------~~~~~~~~~- 278 (473)
+...+++|+.||+|++||+.+++.+..+. ...|.++.|.++ +++++.|++|++|+.. +++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 44689999999999999999998877665 456667777777 8999999999999765 444344443
Q ss_pred ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC
Q 011978 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (473)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 358 (473)
.|...|.++++++.. ....+++++.|+++++||+............
T Consensus 123 ~~~~~v~~~~~~~~~----------------------------------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 168 (343)
T 3lrv_A 123 DSANEIIYMYGHNEV----------------------------------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAK 168 (343)
T ss_dssp CCSSCEEEEECCC-------------------------------------CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred CCCCCEEEEEcCCCC----------------------------------CCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence 455678888776610 1346899999999999998765543223345
Q ss_pred cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE-EEeeC-CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 011978 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRG-HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL 436 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~-~~~~~-h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~ 436 (473)
+...+.+++|+|+|.+||+|+.||.|++||+++++.+ ..+.+ |.++|++++|+|+|.+|++++ |+.|++||+++++.
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 5667999999999999999999999999999999887 78888 999999999999999999999 55999999998876
Q ss_pred eecccc---cCCCEE--EEEEeeCCCEEEEEeC-CCcEEecc
Q 011978 437 KQDLPG---HADEVF--AVDWSPDGEKVASGGK-DRVLKLWM 472 (473)
Q Consensus 437 ~~~~~~---h~~~i~--~l~~s~d~~~l~s~~~-D~~i~~w~ 472 (473)
...+.. |...+. +++|+|+|++|++++. |+.+++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 555443 333443 5999999999999998 99999994
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.7e-30 Score=246.91 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=206.6
Q ss_pred ccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCC--CCceeEEEc--CCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
..+|.+.|.+++|+|++++| ++|+.||.|+|||+. ++..+..+. .|...|.+++|+|++++|++|+.+|.+++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45789999999999999996 899999999999998 777666654 6778999999999999999999999999999
Q ss_pred CCCCcccc---ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC-e
Q 011978 179 PQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-V 253 (473)
Q Consensus 179 ~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~ 253 (473)
+.+++... ..+.+|...|.++.|+|.. ..+.++++++.|++|++||+.+++++.. +.+|...|.+++|+ ++ .
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECT--TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCC--CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 98776432 2467899999999999831 0156899999999999999999988877 66999999999999 76 6
Q ss_pred EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 254 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
|++++.|++|++||+.+++.+..+..+.. +..+.... ...+..+.
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~----------------------------------~~~~~~~~ 299 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQ----------------------------------HLAPPRFQ 299 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTT----------------------------------SBC-----
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecchhh-hhhhhhhc----------------------------------cccccccc
Confidence 88999999999999999987776543210 00000000 00000000
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeC--CCC---ceEEEeeCCccCEEE
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNG--TTG---KFVAVFRGHVGPVYQ 407 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~--~~~---~~~~~~~~h~~~v~~ 407 (473)
. .........+.+++|+|++++|++++ .|+.|++||+ .++ +.+..+..| +.|.+
T Consensus 300 ~-------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 300 N-------------------ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS 359 (450)
T ss_dssp ------------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred c-------------------cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence 0 00001234688999999999999999 8999999999 555 667778888 88999
Q ss_pred EEEecCCCEEEEEeC------CCcEEEEECC
Q 011978 408 ISWSADSRLLLSGSK------DSTLKVWDIR 432 (473)
Q Consensus 408 v~~sp~g~~l~s~s~------Dg~i~iwd~~ 432 (473)
++|+|++.++++++. +..|.+|.+.
T Consensus 360 ~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 360 LSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999996544444443 4568888764
No 122
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=5.4e-30 Score=239.12 Aligned_cols=258 Identities=18% Similarity=0.289 Sum_probs=192.9
Q ss_pred ccccccCCcccEEEEEECC--CCCeEEEEeCCCeEEEEeCCCC---------ceeEEEcCCCCCEEEEEECCC--CCeEE
Q 011978 100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV 166 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~s~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~s~d--g~~l~ 166 (473)
....+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ .++..+..|...|.+++|+|+ +++|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 4556689999999999999 6999999999999999999876 456677899999999999999 99999
Q ss_pred EEecCCeEEEeeCCCCccccc------------cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeE--
Q 011978 167 SGSKAGELQCWDPQTGKPSGN------------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-- 232 (473)
Q Consensus 167 s~~~dg~i~iwd~~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~-- 232 (473)
+++.||.|++||+.+++.... ....|...+.++.|.|..+ ....+++++.++.+.+|+...++.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence 999999999999987764321 1236788899999998543 246899999999998888877764
Q ss_pred EEEecCccccEEEEEecCCC-----eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCccc
Q 011978 233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (473)
+..+.+|...|++++|++++ .+++++.||.|++||++++........+..
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------- 261 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT------------------------- 261 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc-------------------------
Confidence 67788999999999999986 689999999999999876533221110000
Q ss_pred CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcE----EEEEECCCc
Q 011978 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW----VASASFDKS 383 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~----lasgs~d~~ 383 (473)
.......++.... ...+.....
T Consensus 262 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 262 ------------------------------------------------------NSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------ceeccCCCccccccccccccccccee
Confidence 0000001111111 122334456
Q ss_pred EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 384 IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 384 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
+.+|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++...
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 7777777778889999999999999999999999999999999999998765443
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=240.56 Aligned_cols=254 Identities=17% Similarity=0.189 Sum_probs=196.3
Q ss_pred ccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE--CCCCCeEEEEecCCeEEEeeC
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW--SADGKHLVSGSKAGELQCWDP 179 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~dg~~l~s~~~dg~i~iwd~ 179 (473)
..+.+|...|.+++|+|++++|++++.||.|++||+.++.... ...|...|.+++| +|++++|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5678899999999999999999999999999999999887654 5679999999999 999999999999999999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEec--CCC---
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG--GDG--- 252 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~--- 252 (473)
++++.... +..+. .+.++.+.+ ..+++++.++.+++||+.......... .+...+.++.+. ...
T Consensus 159 ~~~~~~~~-~~~~~-~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSNPMMV-LQLPE-RCYCADVIY-------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSSCSEE-EECSS-CEEEEEEET-------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred CCCcEEEE-EecCC-CceEEEecC-------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 88765432 33332 455554432 368889999999999998765443322 223344444443 221
Q ss_pred eEEEeecCCeEEEEECCCCc---eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 VIYTGSQDCTIKVWETTQGK---LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.+++++.|+.|++||+.... .+..+..|...
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 263 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN---------------------------------------------- 263 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----------------------------------------------
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecc----------------------------------------------
Confidence 38899999999999988752 23333222110
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
.......+|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|.+++
T Consensus 264 ---------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 264 ---------------------GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp -------------------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred ---------------------cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence 00011234456799999999999999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 011978 410 WSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 410 ~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
|+|+|++|++++.|+..+.|++.
T Consensus 323 ~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 323 FNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ECTTSSCEEEEECCCSTTCGGGC
T ss_pred ECCCCCeEEEEeccccccccccc
Confidence 99999999999999866665543
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.5e-30 Score=230.98 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=143.8
Q ss_pred ccEEEEEECCC----CCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 109 EAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 109 ~~V~~~~~sp~----~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
..|.+++|+|| ++++++++. .+++|++.+++.+.. ..+|...|..++|+|+|+.+.
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~----------------- 172 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE----------------- 172 (356)
T ss_dssp EEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE-----------------
T ss_pred cceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee-----------------
Confidence 35555556666 555665552 355565554444333 234555555555555544433
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc---ccEEEEEecCCCe-EEEeec
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT---LAVTCVKWGGDGV-IYTGSQ 259 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~-l~s~~~ 259 (473)
.+.+|...+..++|+|.. .++..+++++.|++|+|||+.+++++.++.+|. ..+.+++|+|++. +++++.
T Consensus 173 ----s~~~~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 173 ----NQFLMPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp ----EEEECCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred ----eeccCCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 233566667777777632 245689999999999999999999999998754 3677788999885 333332
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
+.. +|+ +++|+.|+
T Consensus 247 ~~~--~w~----------------------------------------------------------------laSGs~D~ 260 (356)
T 2w18_A 247 PCA--KES----------------------------------------------------------------ESLRSPVF 260 (356)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred CCC--cce----------------------------------------------------------------eeccCCCc
Confidence 211 111 33444455
Q ss_pred eEEEEeCCCCCCCeee----ecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE-EEEEecCC
Q 011978 340 TMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY-QISWSADS 414 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~----~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~g 414 (473)
++++||+...+..... ..+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++++|...+. .++|||||
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence 5555554322211100 1234333333333 378999999999999999999999999999987655 58999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 011978 415 RLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~ 431 (473)
++|++|+.|++|||||+
T Consensus 339 ~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCcEEEecC
Confidence 99999999999999985
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.2e-28 Score=240.94 Aligned_cols=317 Identities=13% Similarity=0.070 Sum_probs=236.2
Q ss_pred EECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeC--CCCccccccCCCc
Q 011978 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH 192 (473)
Q Consensus 115 ~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~ 192 (473)
+|+|++..+++++.|++|.+||..+++.+..+..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.... +. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence 4889999999999999999999999988877773333 899999999999999999999999999 77765443 22 3
Q ss_pred CCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCc----------cc-cEEEEEecCCC--eEEEee
Q 011978 193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH----------TL-AVTCVKWGGDG--VIYTGS 258 (473)
Q Consensus 193 ~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h----------~~-~v~~~~~~~~~--~l~s~~ 258 (473)
......+.|+|.. ..+++++++++ .+++|.+||..+++++..+..+ .. .+.++.+++++ .+++..
T Consensus 221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 3456777776510 00456777776 5899999999999988877642 22 68889999865 466778
Q ss_pred cCCeEEEEECCCCceee--eeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
.++.|.+||..+++.+. .+ .++..+..++++++.. ..++++.
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~-----------------------------------~l~va~~ 343 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR-----------------------------------YFMTAAN 343 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC-----------------------------------EEEEEEG
T ss_pred CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC-----------------------------------EEEEEec
Confidence 89999999998765443 22 2233344444444311 1345666
Q ss_pred CCceEEEEeCCCCCCCeeeecC---cccceeEEEECCC-CcEEEEEE-CCCcEEEEeCCC-------CceEEEeeCCccC
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGP 404 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~-g~~lasgs-~d~~v~lwd~~~-------~~~~~~~~~h~~~ 404 (473)
.+++|.+||....+.......+ |......+ ++|+ |.++++++ .|++|.+||..+ ++++.++.+|.+.
T Consensus 344 ~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 344 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 7899999998765432222211 44333333 5777 67777776 589999999988 8999999999888
Q ss_pred EEEEEEecCCCEEEEEe-------CCCcEEEEECCCCcee-ecc--------cccCCCEEEEEEeeCCCEEEEE-----e
Q 011978 405 VYQISWSADSRLLLSGS-------KDSTLKVWDIRTQKLK-QDL--------PGHADEVFAVDWSPDGEKVASG-----G 463 (473)
Q Consensus 405 v~~v~~sp~g~~l~s~s-------~Dg~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~s~d~~~l~s~-----~ 463 (473)
+..++|+|+|++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.|+|||+.|.++ +
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 89999999999999987 2779999999987765 332 4566789999999999999865 2
Q ss_pred CCCcEEecc
Q 011978 464 KDRVLKLWM 472 (473)
Q Consensus 464 ~D~~i~~w~ 472 (473)
.|+.|.||+
T Consensus 503 ~~~~i~v~D 511 (543)
T 1nir_A 503 DSSALVVVD 511 (543)
T ss_dssp SCCEEEEEE
T ss_pred CCCeEEEEE
Confidence 479999996
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.2e-27 Score=225.63 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=227.8
Q ss_pred cccccCCcccEEEEEECCCCCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEee
Q 011978 101 SATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWD 178 (473)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~l-at~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd 178 (473)
...+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+.+ +.++.|++||
T Consensus 25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence 34445554 58999999999987 566789999999999988877776555 89999999999988654 4679999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eE-E
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-Y 255 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l-~ 255 (473)
+.+++.... +. +...+.++.|+| ++..+ ++++.++.|++||+.+++.+..+..+. .+.+++|++++ .+ +
T Consensus 103 ~~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 103 TTSNTVAGT-VK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYV 174 (391)
T ss_dssp TTTTEEEEE-EE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEE
T ss_pred CCCCeEEEE-Ee-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEE
Confidence 998876433 22 344678888876 34445 788889999999999999888877654 56899999988 34 5
Q ss_pred EeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+++.|+.|++||+++++....+.. ...+..++++++. ..++++
T Consensus 175 ~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------------------------------~~l~~~ 217 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEG------------------------------------TKAYVT 217 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTS------------------------------------SEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCC------------------------------------CEEEEE
Confidence 778899999999999987776654 4466777776542 245555
Q ss_pred c---CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE-EEEECCCcEEEEeCCCCceEEEeeCCccCEE---EE
Q 011978 336 S---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPVY---QI 408 (473)
Q Consensus 336 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~~~~~~~~~~h~~~v~---~v 408 (473)
+ .++.+++||+.... ....+..+. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.. .+
T Consensus 218 ~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 295 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFI 295 (391)
T ss_dssp EECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCE
T ss_pred ecCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceee
Confidence 5 68999999986543 233344443 57899999999987 6778899999999999999888877654421 12
Q ss_pred E------------EecCC----------CEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 409 S------------WSADS----------RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 409 ~------------~sp~g----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
. |+.+. ..+...+.|.++++||+..+.... +..+ ...|+++|.+.++..
T Consensus 296 ~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~----~~~~--~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 296 GSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK----KQNP--THTYSETGIYTVRLT 366 (391)
T ss_dssp EECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----SSSC--EECCSSCEEEEEEEE
T ss_pred ecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC----cCCC--eEEeCCCceEEEEEE
Confidence 2 33221 346666778899999998775421 2222 356888888877543
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=2.3e-27 Score=252.89 Aligned_cols=354 Identities=13% Similarity=0.129 Sum_probs=236.0
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCC------CeEEEEeCCCCceeEEEcCCCCCE-------EEEEECCCCCeEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKHLV 166 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d------~~i~iwd~~~~~~~~~~~~~~~~v-------~~l~~s~dg~~l~ 166 (473)
....+.+|...|.+++|||||++||+++.+ ..|++||+.++. ...+..|...+ .+++|+|||+.++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 345677899999999999999999988643 489999998876 45677888888 9999999999777
Q ss_pred EEecC------CeEEEeeCCCCcccccc------------------------------------------------CCCc
Q 011978 167 SGSKA------GELQCWDPQTGKPSGNP------------------------------------------------LSGH 192 (473)
Q Consensus 167 s~~~d------g~i~iwd~~~~~~~~~~------------------------------------------------~~~~ 192 (473)
+++.+ ..|.+|++.+++..... +.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77644 46888887665432110 1123
Q ss_pred CCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-EEEeecCCeEEEEECCC
Q 011978 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQ 270 (473)
Q Consensus 193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~ 270 (473)
...+..+.|.+ + ..+++++.++.+++|.+.. +.....+..|. .+.+.+|+++|. ++.+ .++.|++||+..
T Consensus 203 ~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 203 STHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp SSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred CCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 33344444433 2 3556677788889997643 33334444444 345668888885 4444 688999998743
Q ss_pred Cceeeeeecc-------------CceEEEEE--------ecccceeeeccccC-CCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 271 GKLIRELKGH-------------GHWVNSLA--------LSTEYALRTGAFDH-TGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 271 ~~~~~~~~~~-------------~~~v~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
.+. ..+..+ ...-..+. +.....+....... ......... ........-..
T Consensus 275 ~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~sd 347 (1045)
T 1k32_A 275 EKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPL------RIRYVRRGGDT 347 (1045)
T ss_dssp CCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCS------CEEEEEECSSS
T ss_pred eEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCC------cceEEeeeEcC
Confidence 332 233221 01111111 11011110000000 000000000 00000000012
Q ss_pred CceEEEecCCceEE-EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEE
Q 011978 329 PERLVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 329 ~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~ 407 (473)
...++.++.+..+. +|+..... ...+.+|...+..++|+|||++||+++.++.|++||+.+++....+.+|.+.+.+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~ 425 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 425 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred CCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence 34577777777888 88875432 2334477788999999999999999999999999999999988888889999999
Q ss_pred EEEecCCCEEEEEeCCC----------cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 408 ISWSADSRLLLSGSKDS----------TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 408 v~~sp~g~~l~s~s~Dg----------~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++|||||++|++++.++ .|++||+.+++ ...+..|...+..+.|+|||++|++++.++..++|.
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 99999999999887654 89999999887 567778888899999999999999999888776664
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=3.1e-27 Score=243.69 Aligned_cols=309 Identities=14% Similarity=0.148 Sum_probs=229.8
Q ss_pred cccEEEEEECCCCCeEEEEeC-CC-----eEEEEeCCCCceeEEEcCCCC------------------------CEEEEE
Q 011978 108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA 157 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~ 157 (473)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999998876555543322 378999
Q ss_pred ECCCCCeEEEEecCCeEEEeeCCCC---ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978 158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (473)
Q Consensus 158 ~s~dg~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~ 234 (473)
|||||++|++++. +.|++||+.++ .. ..+..|...+..+.|+| ++++++.++ ++.|.+||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SP-----DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSP-----KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECT-----TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCC-----CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 9999999999886 99999999887 43 24566778899999987 566777776 5699999999988766
Q ss_pred EecCcccc----------------EEEEEecCCCe-EEEeecCC---------------------------------eEE
Q 011978 235 CLSGHTLA----------------VTCVKWGGDGV-IYTGSQDC---------------------------------TIK 264 (473)
Q Consensus 235 ~~~~h~~~----------------v~~~~~~~~~~-l~s~~~d~---------------------------------~i~ 264 (473)
....+... +.++.|++||. |+.++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55444332 36789999984 77776665 788
Q ss_pred EEECCC-Cceeeeee--ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe-----c
Q 011978 265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-----S 336 (473)
Q Consensus 265 ~wd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~ 336 (473)
+||+.+ ++...... .+...+..+++ ++.. .++.+ .
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~------------------------------------~l~~~~~~~~~ 309 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ------------------------------------HLSFQRQSRDQ 309 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETT------------------------------------EEEEEEEETTS
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCC------------------------------------EEEEEEecccC
Confidence 999988 76544332 36677888888 7632 23322 2
Q ss_pred CCceEEEEeCCCCCCCeeeecCccc----ceeEEEECCCCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEEE-EE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQI-SW 410 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~----~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v-~~ 410 (473)
.+..+++||...... ......+.. .+..++|+|||+++++++.|+.++||... +++ ...+..|...|.++ .|
T Consensus 310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~ 387 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAV 387 (741)
T ss_dssp SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEE
T ss_pred CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEE
Confidence 467899999865432 222222222 34689999999999999999988888765 445 77788888888887 59
Q ss_pred ecCCCEEEE-EeCCC--cEEEEECCC-CceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 411 SADSRLLLS-GSKDS--TLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 411 sp~g~~l~s-~s~Dg--~i~iwd~~~-~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
+|||+.|+. ++.|+ .++||++.. ++....+.. ...+..++|||||++|+....+
T Consensus 388 s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 388 DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 999997765 44555 899999864 554556655 5678899999999998866443
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.1e-28 Score=231.95 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=229.6
Q ss_pred ccEEEEEECCCCC-eEEEEe----CCC----eEEEEeC--CCCcee--EEEcCCCCCEEEEEECC--------------C
Q 011978 109 EAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA--------------D 161 (473)
Q Consensus 109 ~~V~~~~~sp~~~-~lat~s----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~s~--------------d 161 (473)
..+...+|.+.|. .+++|+ .|| +|++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566677888875 455775 567 8999999 888876 34778887777777664 2
Q ss_pred CCeEEEEecC------CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC---cEEEEECCCCeE
Q 011978 162 GKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKC 232 (473)
Q Consensus 162 g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg---~i~iwd~~~~~~ 232 (473)
+..++.++.+ +.|++||...+.. ..+.+|...+.++.|+| ++.++++++.++ .|++||+.++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCCcE
Confidence 6677776654 7999999975432 34567888999999987 567899998875 999999999887
Q ss_pred EEEecCccccEEEEEecCCCe-EE-EeecCCe--EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 233 VICLSGHTLAVTCVKWGGDGV-IY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
. .+.+|...+.+++|+|||. |+ +++.|+. |++||+.+++. ..+..+...+.+++++|+.
T Consensus 216 ~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg--------------- 278 (415)
T 2hqs_A 216 R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS--------------- 278 (415)
T ss_dssp E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS---------------
T ss_pred E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC---------------
Confidence 5 4667888899999999984 55 6666654 99999988775 5666777788888887763
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecC-Cc--eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC---C
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---K 382 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d---~ 382 (473)
..++.++. ++ .+++||..... ...+..+...+.+++|+|+|++|++++.+ .
T Consensus 279 ---------------------~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 279 ---------------------QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp ---------------------SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred ---------------------CEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence 23555544 44 67777876543 23445566788899999999999998865 5
Q ss_pred cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeecccccCCCEEEEEEeeCCC
Q 011978 383 SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 383 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
.|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|++||+.. +....+.+|...|.+++|+|.-.
T Consensus 336 ~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 336 HIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccccccc
Confidence 8999999988764 455554 899999999999999998877 799999974 45677888999999999999643
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-28 Score=247.14 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=182.2
Q ss_pred cccccccCCcccEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCC--CCeEEEEecCC
Q 011978 99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG 172 (473)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d--g~~l~s~~~dg 172 (473)
.+...+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.++. ....+.+|...|.+++|+|+ ++.+++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 345567899999999999998 9999999999999999999886 56677889999999999999 99999999999
Q ss_pred eEEEeeCCCCcc-ccccCCCcCCcEEEEEeceecc--------CCCCceEEEeeCCCcEEEEECCCC----eEEEEecCc
Q 011978 173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHL--------NAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH 239 (473)
Q Consensus 173 ~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~--------~~~~~~~~s~s~dg~i~iwd~~~~----~~~~~~~~h 239 (473)
.|++||+.++.. ....+.+|...|.++.|.|... ..++..+++|+.||.|++||++.+ .....+.+|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 999999987632 2234578899999999988421 113568999999999999999876 566788899
Q ss_pred cccEEEEEecCC---C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 240 TLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 240 ~~~v~~~~~~~~---~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
...|++++|+++ + .+++++.||.|++||+.++.....
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~--------------------------------------- 244 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK--------------------------------------- 244 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB---------------------------------------
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce---------------------------------------
Confidence 999999999998 6 588999999999999876531100
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~ 393 (473)
........|...|.+++|+|+|++|++|+.||.|++||+..+.
T Consensus 245 -----------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 245 -----------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp -----------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred -----------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 0001123456678999999999999999999999999998543
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=7.5e-26 Score=222.88 Aligned_cols=310 Identities=14% Similarity=0.124 Sum_probs=228.8
Q ss_pred ccccccc-CCcccEEEEEECCCCCeEEEEeCCCeEEEEeC--CCCceeEEEcCCCCCEEEEEECC----CCCeEEEEec-
Q 011978 99 RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DGKHLVSGSK- 170 (473)
Q Consensus 99 ~~~~~~~-gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~----dg~~l~s~~~- 170 (473)
++..++. ||. +..++|+|||++|++++.|++|++||+ .+++.+..+. +...+..++|+| ||++|++++.
T Consensus 170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 3455555 444 889999999999999999999999999 7887777766 445689999999 9999999885
Q ss_pred CCeEEEeeCCCCccccccCC-C--------cC-CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE--EecC
Q 011978 171 AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG 238 (473)
Q Consensus 171 dg~i~iwd~~~~~~~~~~~~-~--------~~-~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~--~~~~ 238 (473)
+++|.+||..+++....... + |. ..+.++.++|. ....+++...++.|.+||..+.+.+. .+ .
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~----~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~ 321 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE----HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G 321 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC----CCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence 89999999988876443211 1 22 26777877763 23466778889999999998765433 22 3
Q ss_pred ccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeeeeec----cCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 239 HTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 239 h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
+...+.++.|++++. ++ ++..+++|.+||..+++++..+.. |......+ ++++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~-------------------- 380 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK-------------------- 380 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT--------------------
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC--------------------
Confidence 445677889999984 55 455689999999999998877653 22111111 1111
Q ss_pred HHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCC------CCCeeeecCcccceeEEEECCCCcEEEEEE------
Q 011978 313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWVASAS------ 379 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~v~~sp~g~~lasgs------ 379 (473)
....++++. .|++|.+||.... ......+.+|...+..++|+|+|++|++++
T Consensus 381 ---------------~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 381 ---------------YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp ---------------TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred ---------------CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 012356654 6899999998762 234456677877888899999999999987
Q ss_pred -CCCcEEEEeCCCCceE-EEe--------eCCccCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeecccccC
Q 011978 380 -FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQISWSADSRLLLSGS-----KDSTLKVWDIRTQKLKQDLPGHA 444 (473)
Q Consensus 380 -~d~~v~lwd~~~~~~~-~~~--------~~h~~~v~~v~~sp~g~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~h~ 444 (473)
.+++|.+||..+++.. ..+ ..+...+..++|+|+|+.|.++. .|+.|.|||..+++++.+++.+.
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence 2679999999998876 443 34567899999999999888662 47999999999999988887542
Q ss_pred CCEEEEEEeeCCCE
Q 011978 445 DEVFAVDWSPDGEK 458 (473)
Q Consensus 445 ~~i~~l~~s~d~~~ 458 (473)
+ .+|+|++
T Consensus 526 --~----~~p~g~~ 533 (543)
T 1nir_A 526 --L----ITPTGKF 533 (543)
T ss_dssp --C----CSEEEEE
T ss_pred --c----cCCCeee
Confidence 1 3566654
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1.8e-26 Score=237.34 Aligned_cols=311 Identities=14% Similarity=0.121 Sum_probs=217.6
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCCCCeEEEEecC---------CeEEEe
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW 177 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~s~~~d---------g~i~iw 177 (473)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3567899999998776 7899999999999887766766654 49999999999999998764 788999
Q ss_pred eCCCCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-------------
Q 011978 178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------------- 243 (473)
Q Consensus 178 d~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v------------- 243 (473)
|+.+++... ....+|...+..+.|+| ++++++.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 999886521 11234444566677776 6678888776 899999999887766555544333
Q ss_pred -----EEEEecCCCe-EEEeecCC----------------------------------eEEEEECCCCceeeeeecc---
Q 011978 244 -----TCVKWGGDGV-IYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH--- 280 (473)
Q Consensus 244 -----~~~~~~~~~~-l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~~~~--- 280 (473)
.++.|+|||. |+.++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 7899999984 66665442 7899999888765555543
Q ss_pred ---CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe----cCCceEEEEeCCCCCCCe
Q 011978 281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWEPAVSKQPK 353 (473)
Q Consensus 281 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~ 353 (473)
...+..++++|+..+ ++.. ..+..+++||........
T Consensus 251 ~~~~~~~~~~~~SpDg~~------------------------------------l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKV------------------------------------AVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp GGSSEEEEEEEESSSSEE------------------------------------EEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCccceeEEEEEeCCCeE------------------------------------EEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 567788888876432 3222 234678999986554222
Q ss_pred eeecCcccce----eEEEECCCCcEEEE--EECCC------cEEEEe-CCCCc--eEEEeeCCccCEEE-EEEecCCCEE
Q 011978 354 TRMTGHQQLV----NHVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQ-ISWSADSRLL 417 (473)
Q Consensus 354 ~~~~~~~~~v----~~v~~sp~g~~las--gs~d~------~v~lwd-~~~~~--~~~~~~~h~~~v~~-v~~sp~g~~l 417 (473)
.....+...+ ..++|+|||+.|+. +..++ .|.+|| ...++ +...+..+...+.. ++|+|||+.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence 2222233333 37899999997775 44566 577777 34444 14444433344554 7999999999
Q ss_pred EEEeCC---CcEEEEECCCCc--eeecccc---cCCCEEEEEEeeCCCEEEEEe
Q 011978 418 LSGSKD---STLKVWDIRTQK--LKQDLPG---HADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 418 ~s~s~D---g~i~iwd~~~~~--~~~~~~~---h~~~i~~l~~s~d~~~l~s~~ 463 (473)
+..+.+ +.++||++.... ....+.. |...+..++|||||++|+...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 876655 789999986432 3334443 566788999999999887653
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.1e-25 Score=212.02 Aligned_cols=278 Identities=17% Similarity=0.154 Sum_probs=205.4
Q ss_pred CEEEEEECCCCC-eEEEEe----cCC----eEEEeeC--CCCccc-cccCCCcCCcEEEEEeceec---------cCCCC
Q 011978 152 WVLCIAWSADGK-HLVSGS----KAG----ELQCWDP--QTGKPS-GNPLSGHKKWITGISWEPVH---------LNAPC 210 (473)
Q Consensus 152 ~v~~l~~s~dg~-~l~s~~----~dg----~i~iwd~--~~~~~~-~~~~~~~~~~v~~i~~~~~~---------~~~~~ 210 (473)
.+...+|++.|. .+++|+ .+| .+++||+ .+++.+ ...+.+|...+..+.+.+.. .....
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 455667777775 444765 457 8999999 887754 23355666555544443310 00114
Q ss_pred ceEEEeeCC------CcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC---eEEEEECCCCceeeeeecc
Q 011978 211 RRFVSASKD------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGKLIRELKGH 280 (473)
Q Consensus 211 ~~~~s~s~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~---~i~~wd~~~~~~~~~~~~~ 280 (473)
.+++.++.+ +.|++||+.. .....+.+|...+.+++|+|+| .|++++.|+ .|++||+.+++.. .+..+
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 567666654 7999999974 4456677888999999999998 477787775 9999999998764 46667
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE-EecCCc--eEEEEeCCCCCCCeeeec
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMT 357 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~ 357 (473)
...+.+++++|+.. .++ +++.++ .|++||+.... ...+.
T Consensus 222 ~~~~~~~~~spdg~------------------------------------~la~~~~~~g~~~i~~~d~~~~~--~~~l~ 263 (415)
T 2hqs_A 222 PRHNGAPAFSPDGS------------------------------------KLAFALSKTGSLNLYVMDLASGQ--IRQVT 263 (415)
T ss_dssp SSCEEEEEECTTSS------------------------------------EEEEEECTTSSCEEEEEETTTCC--EEECC
T ss_pred CCcccCEEEcCCCC------------------------------------EEEEEEecCCCceEEEEECCCCC--EEeCc
Confidence 77888888887632 244 555554 49999976543 35667
Q ss_pred CcccceeEEEECCCCcEEEEEECC-C--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC---CcEEEEEC
Q 011978 358 GHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD---STLKVWDI 431 (473)
Q Consensus 358 ~~~~~v~~v~~sp~g~~lasgs~d-~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---g~i~iwd~ 431 (473)
.|...+.+++|+|||++|++++.+ + .|++||..+++. ..+..|...+.+++|+|||++|++++.+ ..|++||+
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 788889999999999999988864 4 677889888764 3455567789999999999999988764 58999999
Q ss_pred CCCceeecccccCCCEEEEEEeeCCCEEEEEeCCC---cEEecc
Q 011978 432 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR---VLKLWM 472 (473)
Q Consensus 432 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~~w~ 472 (473)
.+++.. .+..|. .+.+++|+|||++|++++.|+ .|.+|.
T Consensus 343 ~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp TTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 988764 455554 789999999999999998877 688775
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.7e-24 Score=230.91 Aligned_cols=317 Identities=14% Similarity=0.088 Sum_probs=238.2
Q ss_pred ccccccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcC-----------CCCCEEEEEEC-CCCCeEEE
Q 011978 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVLCIAWS-ADGKHLVS 167 (473)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~s-~dg~~l~s 167 (473)
....+.+|. .+..++|+|||++|+++. ++.|++||+.+.. +..+.. |...+.+++|+ |||++|++
T Consensus 237 ~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 237 DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 344455555 466779999999999874 8999999995443 334443 33468999999 99999998
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCC-cEEEEEeceeccCCCCceEEEeeCCCcEE-EEECCCCeEEEEecCccccEEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDAR-IWDVSLRKCVICLSGHTLAVTC 245 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~v~~ 245 (473)
++ ++.+.+|+..++... .+..|.. .+..+.|+ ++..++.++.+..+. +||+..++... +.+|...+.+
T Consensus 314 ~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s------dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~ 383 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD------TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFA 383 (1045)
T ss_dssp EE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS------SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEE
T ss_pred EE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc------CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceee
Confidence 88 889999999877643 2455655 66666654 456788888888888 99998776554 3488889999
Q ss_pred EEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcc
Q 011978 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (473)
Q Consensus 246 ~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (473)
++|++|| .|++++.++.|++||+.+++....+..|...+..++++|+..
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~------------------------------ 433 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR------------------------------ 433 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC------------------------------
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC------------------------------
Confidence 9999998 478899999999999999988777777877788888887632
Q ss_pred cCCCCceEEEecC----------CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-
Q 011978 325 KGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK- 393 (473)
Q Consensus 325 ~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~- 393 (473)
.++.++. ++.+++||..... ...+..|...+..++|+|||++|++++.++..++|+.....
T Consensus 434 ------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 434 ------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp ------EEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred ------eEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 3444433 3589999986543 45566777888999999999999999988777777643221
Q ss_pred ------------------------------------------eEEEeeCCccCEEEEEEecCCCEEEE------------
Q 011978 394 ------------------------------------------FVAVFRGHVGPVYQISWSADSRLLLS------------ 419 (473)
Q Consensus 394 ------------------------------------------~~~~~~~h~~~v~~v~~sp~g~~l~s------------ 419 (473)
.+..+..|.+.+..++++|||.++++
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~ 585 (1045)
T 1k32_A 506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 585 (1045)
T ss_dssp ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH
T ss_pred ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccc
Confidence 11233446678999999999987775
Q ss_pred -EeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 420 -GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 420 -~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.+.+..|++||+.+++... +. ..+..++|||||++|++++.| .+++|.
T Consensus 586 ~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 586 GAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp CCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred ccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence 1234578889998876532 22 458899999999999999877 788885
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=4.6e-25 Score=200.72 Aligned_cols=254 Identities=19% Similarity=0.235 Sum_probs=187.3
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC-CccccccCCCc-CCcEEEEEec
Q 011978 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWE 202 (473)
Q Consensus 125 t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~-~~~v~~i~~~ 202 (473)
.++.|++|++||+.+++.. .+..|...|.+++|+|||++|++++ ++.|++||+.+ ++.... ...+ ...+.++.|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-DTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-CCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-ccccccccccceEEC
Confidence 3467899999999988755 3455788999999999999999876 78999999988 765432 3333 3567777777
Q ss_pred eeccCCCCceEEEee--CCCcEEEEE--CCCCeEEEEecCccccEEEEEecCCCe-EE-EeecCCeEEEEECCCCceeee
Q 011978 203 PVHLNAPCRRFVSAS--KDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 203 ~~~~~~~~~~~~s~s--~dg~i~iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~i~~wd~~~~~~~~~ 276 (473)
| ++.++++++ .++..++|. ...+. ...+..+. .+.+++|++++. ++ +++.|+.+++|++....
T Consensus 94 p-----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---- 162 (297)
T 2ojh_A 94 P-----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---- 162 (297)
T ss_dssp T-----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----
T ss_pred C-----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC----
Confidence 6 556788887 334555554 44444 23333333 488899999883 44 77888988888753210
Q ss_pred eeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee
Q 011978 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (473)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 356 (473)
.....+
T Consensus 163 --------------------------------------------------------------------------~~~~~~ 168 (297)
T 2ojh_A 163 --------------------------------------------------------------------------GVETRL 168 (297)
T ss_dssp --------------------------------------------------------------------------CCEEEC
T ss_pred --------------------------------------------------------------------------CcceEc
Confidence 000111
Q ss_pred cCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC-CCceEEEeeCCccCEEEEEEecCCCEEEEEeCC-----------
Q 011978 357 TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT-TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD----------- 423 (473)
Q Consensus 357 ~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D----------- 423 (473)
..+...+.+++|+|+|++|+.++ .|+.+++|++. .+..+..+..|...+.+++|+|+|++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 22345678899999999888776 58999999886 556677778888889999999999999988876
Q ss_pred CcEEEEECCCCce--eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 424 STLKVWDIRTQKL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 424 g~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+.|++||+.+++. +..+.+|...+..++|+|||++|++++.|.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 334557788899999999999999888764
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.6e-24 Score=222.18 Aligned_cols=310 Identities=14% Similarity=0.148 Sum_probs=215.0
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCC-----------------CCEEEEEECCCCCeEEEEecCC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG 172 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~l~~s~dg~~l~s~~~dg 172 (473)
+..+.|. |..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|||| +.++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 3446777 67788888888 8 9999988762 2222222 46999999999 666655 459
Q ss_pred eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-----CeEEEEecCcccc-----
Q 011978 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA----- 242 (473)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~~~~h~~~----- 242 (473)
.|++||+.+++... +..+...+..+.|+| ++.++++ +.++.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~--l~~~~~~~~~~~~Sp-----dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 102 GLVGFDMLARKVTY--LFDTNEETASLDFSP-----VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EEEEEETTTTEEEE--EECCTTCCTTCEECT-----TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EEEEEECCCCceEE--ccCCcccccCCcCCC-----CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 99999998876432 334455566677766 5667777 4789999999988 7766544444333
Q ss_pred ---------EEEEEecCCCe-EEEee---------------------------------cCCeEEEEECCCCceeeeee-
Q 011978 243 ---------VTCVKWGGDGV-IYTGS---------------------------------QDCTIKVWETTQGKLIRELK- 278 (473)
Q Consensus 243 ---------v~~~~~~~~~~-l~s~~---------------------------------~d~~i~~wd~~~~~~~~~~~- 278 (473)
+.++.|++||. |++++ .+..|++||+.+++......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999984 66665 34679999999887654332
Q ss_pred -ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-----ceEEEEeCCCCCCC
Q 011978 279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQP 352 (473)
Q Consensus 279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~ 352 (473)
.+...+..++++++. ..++.++.+ ..+++||.......
T Consensus 254 ~~~~~~~~~~~~spdg------------------------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDE------------------------------------NILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp SCTTCEEEEEEECTTS------------------------------------SEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CCCceeEeeEEEECCC------------------------------------CEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 456678888888763 234554444 38999998765222
Q ss_pred eeeec-Cccc---ceeEEEECC--CCcEEEEEECCCcEEEEeCC-CCceEEEeeCCccCEEE-EEEecCCCEEEEEeC-C
Q 011978 353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQ-ISWSADSRLLLSGSK-D 423 (473)
Q Consensus 353 ~~~~~-~~~~---~v~~v~~sp--~g~~lasgs~d~~v~lwd~~-~~~~~~~~~~h~~~v~~-v~~sp~g~~l~s~s~-D 423 (473)
..... .+.. .+.+++|+| ||+++++++.|+.++||++. +++.+..+..|...+.+ ++|+|||+.|+.++. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 22221 1222 246789999 99999999999999999876 66777788888888887 899999998766554 4
Q ss_pred C----cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC----CcEEecc
Q 011978 424 S----TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD----RVLKLWM 472 (473)
Q Consensus 424 g----~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~~w~ 472 (473)
+ .|+.||+.+++ ...+. |...+..++|||||++|+.+..+ +.+.+|+
T Consensus 378 ~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4 67777777765 33443 56679999999999999876544 4588885
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=2.1e-23 Score=195.17 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=205.3
Q ss_pred cccEEEEEECCCCCeEEEEeC-------CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEeeC
Q 011978 108 TEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDP 179 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd~ 179 (473)
...+..++|+|+|+++++++. ++.|.+||..+++....+.. ...+..++|+|+|++++.+ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456788999999999888773 56899999999887666543 2346789999999966554 55799999999
Q ss_pred CCCccccccCCCcCC--------cEEEEEeceeccCCCCceEEEee--CCCcEEEEECCCCeEEEEecCccccEEEEEec
Q 011978 180 QTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~~~~~~~~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 249 (473)
.+++.......++.. .+.++.|+| ++.++++++ .++.|.+||..+++.+..+..+...+.++.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 988754332221111 256777776 444555544 57899999999999888887566667888999
Q ss_pred CCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 250 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
+++ .+++++.++.|.+||..+++....+...
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------------------------ 225 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLL------------------------------------------------ 225 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECC------------------------------------------------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------------------------
Confidence 887 5888888999999999887665433210
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEeeCCccCEEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~~h~~~v~~ 407 (473)
..++...+..++|+|+|++++.++.+ +.|.+||..+++.+..+..... ..
T Consensus 226 ---------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 226 ---------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp ---------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred ---------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 00122346789999999987777654 8999999999998887765442 57
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 408 ISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 408 v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
++|+|+|++++.++ .++.|.+||+.+++....+..+ ..+.+++|+|||++|+.+..+
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 99999999666555 6899999999998887777643 467899999999977666554
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.8e-23 Score=193.84 Aligned_cols=275 Identities=11% Similarity=0.094 Sum_probs=192.1
Q ss_pred EECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCccccccCCCc
Q 011978 115 AFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGH 192 (473)
Q Consensus 115 ~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~ 192 (473)
.|.+++.+ +++++.++.|++||..+++.......+...+ +++|+|||++|++++. ++.|.+||..+++.....+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45566665 5677789999999999988777666666667 9999999997777665 8999999998887522233344
Q ss_pred CCcEEEEEeceeccCCCCceEEEeeCCC---cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEe-ecCCe-EEEE
Q 011978 193 KKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG-SQDCT-IKVW 266 (473)
Q Consensus 193 ~~~v~~i~~~~~~~~~~~~~~~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~-i~~w 266 (473)
.....++.|+| ++.+++++..++ .|.+||+.+++.+..+..+ ....+++|+++|. ++++ ..++. +.+|
T Consensus 83 ~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 83 QSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp SSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred CCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence 44444366665 556677554443 8999999999888776554 3468999999983 5544 55578 9999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
++.....+..... .
T Consensus 157 ~~~~~g~~~~~~~--------------------------------------------------------------~---- 170 (331)
T 3u4y_A 157 KIDADGVLFDTGQ--------------------------------------------------------------E---- 170 (331)
T ss_dssp EECTTCCEEEEEE--------------------------------------------------------------E----
T ss_pred EECCCCcEeecCC--------------------------------------------------------------c----
Confidence 9764322111000 0
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce---EEEeeCCccCEEEEEEecCCCEEEEEe-
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF---VAVFRGHVGPVYQISWSADSRLLLSGS- 421 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~---~~~~~~h~~~v~~v~~sp~g~~l~s~s- 421 (473)
.. .....+..++|+|+|++++.++ .++.|++||+.+++. +..+..+ ..+..++|+|||++|+.++
T Consensus 171 --------~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 171 --------FI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp --------EE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred --------cc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 00 0112357899999999665554 688999999999988 7777654 5678899999999776654
Q ss_pred CCCcEEEEECCCCce--eeccccc----CC---CEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978 422 KDSTLKVWDIRTQKL--KQDLPGH----AD---EVFAVDWSPDGEKVASGG-KDRVLKLWM 472 (473)
Q Consensus 422 ~Dg~i~iwd~~~~~~--~~~~~~h----~~---~i~~l~~s~d~~~l~s~~-~D~~i~~w~ 472 (473)
.++.|.+||+.+++. ...+..+ .. ....++|+|||++|+.++ .++.|.+|+
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 578899999998776 2222211 11 235689999999886555 456999996
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5.1e-24 Score=219.67 Aligned_cols=303 Identities=11% Similarity=0.083 Sum_probs=200.1
Q ss_pred CCCEEEEEECCCCCeEEEEec-CC-----eEEEeeCCCCccccccCCCcC------------------------CcEEEE
Q 011978 150 KNWVLCIAWSADGKHLVSGSK-AG-----ELQCWDPQTGKPSGNPLSGHK------------------------KWITGI 199 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~~v~~i 199 (473)
...+.+++|||||++|++++. |+ .|++||+.+++.... +..+. ..+..+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999999999998 88 899999998864322 22221 124556
Q ss_pred EeceeccCCCCceEEEeeCCCcEEEEECCCCe--EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee
Q 011978 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277 (473)
Q Consensus 200 ~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 277 (473)
.|+| ++.++++++. +.|++||+.++. ....+..|...+.+++|+|||..+....++.|++||+.+++.....
T Consensus 115 ~~Sp-----Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSP-----DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECT-----TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred EECC-----CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 6665 6678888776 999999998873 3445667888899999999996443344679999999988765544
Q ss_pred eccCce----------------EEEEEeccccee-eeccccCCCcccCCHHHHHHHHHhhhhcccCCC--CceEE---Ee
Q 011978 278 KGHGHW----------------VNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--PERLV---SG 335 (473)
Q Consensus 278 ~~~~~~----------------v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~---~~ 335 (473)
..+... +..+.++|+... .....+........ ........ ...+. .+
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~-----------~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK-----------RYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE-----------EEEECSSCEEEEEEECCBTT
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe-----------cCCCCCCcccceEeecCCCC
Confidence 333221 244556655331 11111111000000 00000000 00000 00
Q ss_pred cC--CceEEEEeCCC-CCCCeeeec-CcccceeEEEECCCCcEEEEEEC-----CCcEEEEeCCCCceEEEeeCCcc---
Q 011978 336 SD--DFTMFLWEPAV-SKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF-----DKSIKLWNGTTGKFVAVFRGHVG--- 403 (473)
Q Consensus 336 ~~--d~~i~iwd~~~-~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs~-----d~~v~lwd~~~~~~~~~~~~h~~--- 403 (473)
.. ...+++||+.. ......... .|...+..++| |||++|++++. +..|++||..+++....+..+..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 01 11678888765 432221111 46778999999 99999998764 56799999999988777766543
Q ss_pred -CEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeecccccCCCEEEE-EEeeCCCEEEE-EeCCC--cEEecc
Q 011978 404 -PVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAV-DWSPDGEKVAS-GGKDR--VLKLWM 472 (473)
Q Consensus 404 -~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s-~~~D~--~i~~w~ 472 (473)
.+.+++|+|||+++++++.||.++||.+. .++ ...+..|...|..+ .|+|||+.|+. ++.|+ .++||.
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 45689999999999999999988888765 344 67777888888887 59999998754 45555 888885
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=5.1e-24 Score=213.31 Aligned_cols=261 Identities=11% Similarity=-0.005 Sum_probs=185.7
Q ss_pred cccEEEEEECCCCCeEEEEeC-CCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEEEEec---CCeEEEeeCCC-
Q 011978 108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT- 181 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~- 181 (473)
..+|.+++|+|||++||+++. ||+++||++.++.. ..+..|. ..+.+++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999886 99999999976654 4455555 68999999999 77777665 45555654432
Q ss_pred --CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEee
Q 011978 182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS 258 (473)
Q Consensus 182 --~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~ 258 (473)
+... .....+. +....|+|.. + ..+++.+.++.+.+||+.+++.......+. .++.|+|||. +++++
T Consensus 99 ~~g~~~-~l~~~~~--~~~~~~s~dg---~-~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGEEQ-RLEAVKP--MRILSGVDTG---E-AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTCCE-ECTTSCS--BEEEEEEECS---S-CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred CCCccc-cccCCCC--ceeeeeCCCC---C-eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 2221 1122211 2244555521 1 233344444555699999887655443332 6788888884 55566
Q ss_pred cC----CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 259 QD----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 259 ~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
.| +.|++||+.+++..
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~------------------------------------------------------------ 188 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR------------------------------------------------------------ 188 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE------------------------------------------------------------
T ss_pred EcCCCCeEEEEEcCCCCCce------------------------------------------------------------
Confidence 55 66777776655421
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccCEEEEE---
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIS--- 409 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~--- 409 (473)
.+..|...+..++|||||++|+++..++ .|++||..+++.. .+.+|...+..++
T Consensus 189 --------------------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 189 --------------------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp --------------------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred --------------------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 1223445578899999999999888888 8999999999887 7777877676677
Q ss_pred -----EecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 410 -----WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 410 -----~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
|+|||.++++++.|+++++|++ ++.... +...+.+++|+ |++.+++++.+.+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCC
Confidence 9999999999999999999999 655442 33568899999 9999999888754
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=7e-23 Score=190.64 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=190.7
Q ss_pred EEEEeCCCeEEEEeCCC-Cc-eeEEEcCCCCCEEEEEECCCCCeEEEEecC-CeEEEeeCC--CCcccc-ccCCCcCCcE
Q 011978 123 LASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSG-NPLSGHKKWI 196 (473)
Q Consensus 123 lat~s~d~~i~iwd~~~-~~-~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g~i~iwd~~--~~~~~~-~~~~~~~~~v 196 (473)
+++++.|+.|++||+.. +. .......+...+.+++|+|+|++|++++.+ +.|.+|++. +++... ..+..+. .+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence 34447799999999853 32 222223466778999999999999988887 999999987 544221 1122222 56
Q ss_pred EEEEeceeccCCCCceEEEee-CCCcEEEEEC---CCCeEEEEecCccccEEEEEecCCC-eEEEee-cCCeEEEEECCC
Q 011978 197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQ 270 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~-~d~~i~~wd~~~ 270 (473)
..+.|+| ++.++++++ .++.|.+||+ ...+.+..+..+ ..+.+++|++++ .+++++ .++.|++||+.+
T Consensus 87 ~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 87 THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 6777766 445565554 5889999999 444445555444 357889999988 466666 899999999987
Q ss_pred -Cceee----eeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 271 -GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 271 -~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
++... .+.. .+..+..++++++. ...++++..++.+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg-----------------------------------~~l~~~~~~~~~i~~~ 205 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNE-----------------------------------QYAYCVNELNSSVDVW 205 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTTS-----------------------------------SEEEEEETTTTEEEEE
T ss_pred CCceeeecccccccCCCCCcceEEECCCC-----------------------------------CEEEEEeCCCCEEEEE
Confidence 54432 1222 23345555555542 1134556688999999
Q ss_pred eCCCCCCCe---eeec----C--cccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CC--ceEEEeeCCccCEEEEEE
Q 011978 345 EPAVSKQPK---TRMT----G--HQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG--KFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 345 d~~~~~~~~---~~~~----~--~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~--~~~~~~~~h~~~v~~v~~ 410 (473)
+........ .... + ....+..++|+|+|++|+.+ ..++.|++||+. ++ +.+..+..+.. +.+++|
T Consensus 206 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~ 284 (343)
T 1ri6_A 206 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV 284 (343)
T ss_dssp ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE
T ss_pred EecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE
Confidence 985322111 1111 1 12356689999999988754 478999999998 33 44555555544 889999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEC--CCCce--eecccccCCCEEEEEEeeCCCE
Q 011978 411 SADSRLLLSGS-KDSTLKVWDI--RTQKL--KQDLPGHADEVFAVDWSPDGEK 458 (473)
Q Consensus 411 sp~g~~l~s~s-~Dg~i~iwd~--~~~~~--~~~~~~h~~~i~~l~~s~d~~~ 458 (473)
+|+|++|++++ .|+.|.+|++ .+++. +..+... ....+++|.|+.+.
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence 99999888887 6899999955 45533 3344332 34567888877553
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=5.5e-23 Score=210.73 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=198.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC-----Cc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK 183 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~-----~~ 183 (473)
..|.+++|||| +.++.+. ++.|++||+.+++.. .+..+...+.+++|||||++|+++ .++.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666553 599999999887654 344566778899999999999985 689999999988 66
Q ss_pred cccccCCCcCCc--------------EEEEEeceeccCCCCceEEEee--------------------------------
Q 011978 184 PSGNPLSGHKKW--------------ITGISWEPVHLNAPCRRFVSAS-------------------------------- 217 (473)
Q Consensus 184 ~~~~~~~~~~~~--------------v~~i~~~~~~~~~~~~~~~s~s-------------------------------- 217 (473)
.... ...+... +.++.|+| ++.++++++
T Consensus 158 ~~~~-~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 158 AIAV-TIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CEES-CSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred cEEe-ccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 4432 2222222 36677776 667888877
Q ss_pred -CCCcEEEEECCCCeEEEEec--CccccEEEEEecCCCe-EEEeecCC-----eEEEEECCCCceeeeeec--cCce---
Q 011978 218 -KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC-----TIKVWETTQGKLIRELKG--HGHW--- 283 (473)
Q Consensus 218 -~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~s~~~d~-----~i~~wd~~~~~~~~~~~~--~~~~--- 283 (473)
.+..|.+||+.+++...... .|...+.+++|++||. |++++.++ .|++||..+++....+.. +..+
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999999988655442 4667899999999985 77777665 899999998843333321 1111
Q ss_pred EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccce
Q 011978 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLV 363 (473)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 363 (473)
+..+.+++. .....+++++.|+.+.+|+..........+..+...+
T Consensus 312 ~~~~~~sp~----------------------------------~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 312 LHPLTFLPG----------------------------------SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV 357 (706)
T ss_dssp CSCCEECTT----------------------------------CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE
T ss_pred cCCceeecC----------------------------------CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE
Confidence 112223220 0123577788888888887653334445556666667
Q ss_pred eE-EEECCCCcEEEEEECC-C----cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC----CcEEEEECCC
Q 011978 364 NH-VYFSPDGQWVASASFD-K----SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD----STLKVWDIRT 433 (473)
Q Consensus 364 ~~-v~~sp~g~~lasgs~d-~----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D----g~i~iwd~~~ 433 (473)
.. ++|+|+|+.|+.++.+ + .|..||..+++. ..+. |...+.+++|||||++|+..+.+ +.|++||+.+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 66 7999999988766554 3 677778777663 3333 66779999999999988876443 4699999988
Q ss_pred Cc
Q 011978 434 QK 435 (473)
Q Consensus 434 ~~ 435 (473)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 76
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.1e-22 Score=188.90 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=195.3
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCC-C-CEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCCc----C
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N-WVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSGH----K 193 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~-~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~----~ 193 (473)
+++++++.++.|++||+.+++.+..+.... . .+.+++|+|||++++ ++..++.|.+||+.+++.......++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 468899999999999999988776655322 2 478899999998765 45567899999998887543222222 1
Q ss_pred CcEEEEEeceeccCCCCceEEEee------------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeecC
Q 011978 194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD 260 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d 260 (473)
..+..+.|+| ++.++++++ .++.|.+||+.+++.+..+.. ...+.+++|++++. ++++ +
T Consensus 82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence 1344555554 555677665 579999999999887776654 34567788999885 6666 6
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce----EEEec
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS 336 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~ 336 (473)
+.|++||+.+++....+..+... ..+.++++.... +.. ...... .....
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l----------~~~----------------~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV----------WNQ----------------HESSGVMATPFYTAR 206 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC----------CCC----------------CTTTTEEEEEEEEEB
T ss_pred CeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE----------eee----------------ccCCCceeeeeeccc
Confidence 89999999998877655432200 001122221100 000 000000 01111
Q ss_pred CC----------ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978 337 DD----------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 337 ~d----------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
.+ ..+.+||....+........+...+.+++|+|+|++++++ ++.|++||..+++.+..+..+ ..+.
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~ 283 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYY 283 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCC
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-Ccee
Confidence 11 1678999876543323334455678889999999999988 689999999999888777644 4578
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h 443 (473)
+++|+|||++|++++.|+.|++||+.+++.+..+..+
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999999999999999999999999998877766543
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=208.03 Aligned_cols=311 Identities=13% Similarity=0.085 Sum_probs=210.5
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC---CEEEEEECCCCCeEEEEec---------CCeEEEeeCC
Q 011978 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ 180 (473)
Q Consensus 113 ~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~s~~~---------dg~i~iwd~~ 180 (473)
+++|+|||+++++ +.|++|++||+.++++...+..|.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 5799999965554 4699999999999887665554433 4889999999999998876 7899999999
Q ss_pred CCcccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCccccE---------------
Q 011978 181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV--------------- 243 (473)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v--------------- 243 (473)
+++... ..+ ...+..+.|+| ++.+++.+. ++.|++||+.+++..... .++...|
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 887521 112 23567788877 566787775 789999999888765432 2333322
Q ss_pred --EEEEecCCC-eEEEeecCC----------------------------------eEEEEECCCCcee--------eeee
Q 011978 244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI--------RELK 278 (473)
Q Consensus 244 --~~~~~~~~~-~l~s~~~d~----------------------------------~i~~wd~~~~~~~--------~~~~ 278 (473)
.++.|+||| .|+.++.|. .|++||+.+++.. ..+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 479999998 466666542 7889999887643 1233
Q ss_pred ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec--C--CceEEEEe----CCCCC
Q 011978 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--D--DFTMFLWE----PAVSK 350 (473)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~--d~~i~iwd----~~~~~ 350 (473)
.+...+..++++|+.. .+++.. . ...|.+|| .....
T Consensus 250 ~~~~~~~~~~~SpD~~------------------------------------~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 250 SSDYYFSWLTWVTDER------------------------------------VCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp TSCEEEEEEEESSSSE------------------------------------EEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCcceEEEeEEeCCCe------------------------------------EEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 5677788888887632 223321 1 23578888 54433
Q ss_pred CCeeee---cCccccee-----EEEECCCCcEEEE--EECCC--cEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEE
Q 011978 351 QPKTRM---TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 351 ~~~~~~---~~~~~~v~-----~v~~sp~g~~las--gs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
...... .+|...+. .++|+|||+.|+. ...++ .|.+||..+++ ...+..+...+..+.++ +++.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEE
Confidence 222111 35666666 8899999996654 44555 57777887766 44555566678888888 888777
Q ss_pred EEeCC-----CcEEEEECCC--Cc-eeec----ccccCCCEEEEEEeeCCCEEEEE-eCC--CcEEec
Q 011978 419 SGSKD-----STLKVWDIRT--QK-LKQD----LPGHADEVFAVDWSPDGEKVASG-GKD--RVLKLW 471 (473)
Q Consensus 419 s~s~D-----g~i~iwd~~~--~~-~~~~----~~~h~~~i~~l~~s~d~~~l~s~-~~D--~~i~~w 471 (473)
..+.+ +..++|.+.. +. .... +.+|...+..+.|+||+++++.. +.+ ..+.+|
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~ 439 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH 439 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence 76655 7888998753 32 1222 33366678899999999988743 333 244454
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.7e-22 Score=180.20 Aligned_cols=234 Identities=20% Similarity=0.220 Sum_probs=170.5
Q ss_pred cccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCC-CceeEEEcCC-CCCEEEEEECCCCCeEEEEec--CCe--EEE
Q 011978 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGSK--AGE--LQC 176 (473)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~l~~s~dg~~l~s~~~--dg~--i~i 176 (473)
.+.+|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|||++|++++. ++. |..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456888999999999999999986 78999999998 7665555455 367889999999999999983 344 555
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEE-EeeCCCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV- 253 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~-s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~- 253 (473)
|+..++... .+..+. .+..+.|+| ++..++ +++.++.+++|++.. ......+..|...+.++.|++++.
T Consensus 115 ~~~~~~~~~--~~~~~~-~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 115 LPSTGGTPR--LMTKNL-PSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp EETTCCCCE--ECCSSS-SEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred EECCCCceE--EeecCC-CccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence 555555422 233333 377788876 445565 788899999998632 233455667788899999999884
Q ss_pred EEEe-ecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 254 IYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 254 l~s~-~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
++.+ ..++.+++|++. .+....
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~~-------------------------------------------------------- 210 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSVE-------------------------------------------------------- 210 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCEE--------------------------------------------------------
T ss_pred EEEEecCCCCccEEEECCCCCCcE--------------------------------------------------------
Confidence 5544 468888888764 221111
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-----------CcEEEEeCCCCceE--EEe
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKFV--AVF 398 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-----------~~v~lwd~~~~~~~--~~~ 398 (473)
.+..|...+.+++|+|+|++|++++.+ +.|++||+.+++.. ..+
T Consensus 211 -----------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 211 -----------------------RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp -----------------------ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred -----------------------EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 112233457789999999999988876 56999999988653 444
Q ss_pred eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978 399 RGHVGPVYQISWSADSRLLLSGSKDS 424 (473)
Q Consensus 399 ~~h~~~v~~v~~sp~g~~l~s~s~Dg 424 (473)
.+|...+.+++|+|+|++|++++.|.
T Consensus 268 ~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 268 FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCcccccceECCCCCEEEEEEecc
Confidence 57888999999999999998887654
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.1e-22 Score=209.14 Aligned_cols=303 Identities=12% Similarity=0.095 Sum_probs=195.3
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCC---cEEEEEeceeccCCCCceEEEeeCC---------
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---WITGISWEPVHLNAPCRRFVSASKD--------- 219 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~~s~s~d--------- 219 (473)
.+.+++|+|||+++++ +.||+|++||..+++... .+..|.. .+..+.|+| +++++++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~Sp-----Dg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISP-----DREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECT-----TSSEEEEEESCCCCSSSCCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE-EeccccccccccceEEECC-----CCCEEEEEecCccceeecce
Confidence 3677899999997766 789999999999886543 3444443 378888877 66788888764
Q ss_pred CcEEEEECCCCeEEE--EecCccccEEEEEecCCCe-EEEeecCCeEEEEECCCCceeeeeeccCce-------------
Q 011978 220 GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHW------------- 283 (473)
Q Consensus 220 g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~------------- 283 (473)
+.+.+||+.+++... ...+|...+.+++|+|||. |+.++ ++.|++||+.+++..+....+...
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 778899999887622 2234445588899999994 55555 489999999988776555443322
Q ss_pred -----EEEEEecccce-eeeccccCCCc-ccCCHHHHHHHHHhhhhcccCCCCceEEE---e--cCCceEEEEeCCCCCC
Q 011978 284 -----VNSLALSTEYA-LRTGAFDHTGK-QYSSPEEMKKAALERYNKIKGNAPERLVS---G--SDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 284 -----v~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~--~~d~~i~iwd~~~~~~ 351 (473)
+..++++|+.. +.....+.... .+... ............+.- | ..+..+++||......
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP---------TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC---------CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEee---------ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence 26788888754 32332222110 00000 000000000000000 0 1234899999876543
Q ss_pred CeeeecC------cccceeEEEECCCCcEEEEEECC----CcEEEEeCCCCceEEEeeC-CccCEE----EEEEecCCCE
Q 011978 352 PKTRMTG------HQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTGKFVAVFRG-HVGPVY----QISWSADSRL 416 (473)
Q Consensus 352 ~~~~~~~------~~~~v~~v~~sp~g~~lasgs~d----~~v~lwd~~~~~~~~~~~~-h~~~v~----~v~~sp~g~~ 416 (473)
. ..+.. +...+..++|||||++|++.+.. ..|++||+.++++...+.. +.+.+. .++|||||+.
T Consensus 241 ~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 241 D-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp C-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred e-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence 2 22332 35678999999999999877543 5799999999987766654 334443 7899999997
Q ss_pred EEE--EeCCC------cEEEEE-CCCCce--eecccccCCCEEE-EEEeeCCCEEEEEeCC---CcEEecc
Q 011978 417 LLS--GSKDS------TLKVWD-IRTQKL--KQDLPGHADEVFA-VDWSPDGEKVASGGKD---RVLKLWM 472 (473)
Q Consensus 417 l~s--~s~Dg------~i~iwd-~~~~~~--~~~~~~h~~~i~~-l~~s~d~~~l~s~~~D---~~i~~w~ 472 (473)
|+. +..|+ .|++|| ...++. ...+..+...+.. ++|||||+.|+..+.+ +.++||.
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 775 44677 577788 344441 4455544444554 6999999999876655 7888885
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.4e-21 Score=181.83 Aligned_cols=265 Identities=12% Similarity=0.187 Sum_probs=173.2
Q ss_pred eEE-EEecCCeEEEeeCCC-CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-CcEEEEECC--CCe--EEEEe
Q 011978 164 HLV-SGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVS--LRK--CVICL 236 (473)
Q Consensus 164 ~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-g~i~iwd~~--~~~--~~~~~ 236 (473)
+++ +++.++.|++|++.. +.........+...+..+.|+| ++.++++++.+ +.+.+|++. +++ .+..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-----CCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 444 447799999999853 3221111233555677777776 45667777766 999999997 444 33444
Q ss_pred cCccccEEEEEecCCCe-EEEee-cCCeEEEEECC---CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 237 SGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETT---QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 237 ~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
..+. .+.+++|++++. +++++ .++.|.+||+. .++....+..+. .+..++++++
T Consensus 81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~d------------------- 139 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPD------------------- 139 (343)
T ss_dssp ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTT-------------------
T ss_pred ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCC-------------------
Confidence 4443 778899999884 55554 58899999984 333333332222 2333333332
Q ss_pred HHHHHHHhhhhcccCCCCceEEEec-CCceEEEEeCCCCCCCee----ee-cCcccceeEEEECCCCcEEEEEE-CCCcE
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT----RM-TGHQQLVNHVYFSPDGQWVASAS-FDKSI 384 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~----~~-~~~~~~v~~v~~sp~g~~lasgs-~d~~v 384 (473)
...+++++ .++.+.+||+........ .. ......+..++|+|+|+++++++ .++.|
T Consensus 140 -----------------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 140 -----------------NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp -----------------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred -----------------CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 22344444 889999999865222211 11 22234678899999999776555 78999
Q ss_pred EEEeCCC--Cce--EEEee----CC--ccCEEEEEEecCCCEEEE-EeCCCcEEEEECC--C--CceeecccccCCCEEE
Q 011978 385 KLWNGTT--GKF--VAVFR----GH--VGPVYQISWSADSRLLLS-GSKDSTLKVWDIR--T--QKLKQDLPGHADEVFA 449 (473)
Q Consensus 385 ~lwd~~~--~~~--~~~~~----~h--~~~v~~v~~sp~g~~l~s-~s~Dg~i~iwd~~--~--~~~~~~~~~h~~~i~~ 449 (473)
++||+.. ++. ...+. ++ ...+.+++|+|+|++|+. ++.|+.|++||+. + .+....+..+.. +.+
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~ 281 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRG 281 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCC
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cce
Confidence 9999953 433 22222 11 235778999999988774 4579999999998 3 234444544444 889
Q ss_pred EEEeeCCCEEEEEe-CCCcEEecc
Q 011978 450 VDWSPDGEKVASGG-KDRVLKLWM 472 (473)
Q Consensus 450 l~~s~d~~~l~s~~-~D~~i~~w~ 472 (473)
++|+|||++|++++ .|+.+.+|.
T Consensus 282 ~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 282 FNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEECCCCCEEEEecCCCCeEEEEE
Confidence 99999999888887 689999993
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=1.3e-21 Score=182.49 Aligned_cols=283 Identities=12% Similarity=0.056 Sum_probs=189.5
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEE-EEecCCeEEEeeCCCCccccccCCC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLSG 191 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~ 191 (473)
+++++++.++++++.+++|++||+.+++.+..+..+. ..+..++|+|||++++ ++..++.|.+||+.+++........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 5678888999999999999999999988776665433 2578899999998765 4556899999999988754322222
Q ss_pred c-----CCcEEEEEeceeccCCCCceEEEeeCC------------CcEEEEECCCCe---EEEEecCccccEEEEEecCC
Q 011978 192 H-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGGD 251 (473)
Q Consensus 192 ~-----~~~v~~i~~~~~~~~~~~~~~~s~s~d------------g~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~ 251 (473)
+ ...+.++.|+| ++.++++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+++
T Consensus 85 ~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d 158 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADD 158 (349)
T ss_dssp CSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTT
T ss_pred cccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCC
Confidence 2 12244555554 56678777755 899999998743 2233333 335788899999
Q ss_pred CeEEEeecCCeEEEEECCCCceeeeeeccCc------------------------eEEEEEecccceeeeccccCCCccc
Q 011978 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQY 307 (473)
Q Consensus 252 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (473)
+.++.++. .|++||..+++.+..+..+.. ....+++.++....
T Consensus 159 g~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 225 (349)
T 1jmx_B 159 GSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD----------- 225 (349)
T ss_dssp SCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----------------
T ss_pred CcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC-----------
Confidence 87666544 499999999887765543210 00011111000000
Q ss_pred CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCCcEEE
Q 011978 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKL 386 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~~v~l 386 (473)
.. ........+.....++.+.+|+.. .+...+..++|+| +|++++++ ++.|.+
T Consensus 226 ----------~~----~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 226 ----------PA----TADLLYGYLSVDLKTGKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp -----------C----CCEEEEEEEEEETTTCCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred ----------cc----ccccceeEEEEeccCCcEEecccc----------cCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 00 000000011122334445555431 2345678899999 99999988 889999
Q ss_pred EeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc
Q 011978 387 WNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 442 (473)
||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..++.
T Consensus 280 ~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 280 YDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 999999988777643 3467899999999988888899999999999887766543
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.5e-20 Score=173.94 Aligned_cols=262 Identities=18% Similarity=0.180 Sum_probs=172.0
Q ss_pred CCCeEEEEeCC--CCceeE-EEcCCCCCEEEEEECCCCCeEEEEec---CCeEEEeeCCCCcccc-ccCCCcCCcEEEEE
Q 011978 128 GDTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGIS 200 (473)
Q Consensus 128 ~d~~i~iwd~~--~~~~~~-~~~~~~~~v~~l~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~v~~i~ 200 (473)
.++.|.+|++. +++... ....+......++|+|||+ |++++. ++.|++|++.+++... .....+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 35677777764 443322 2233445677899999999 666554 6899999997665321 11233455566677
Q ss_pred eceeccCCCCceEEEee-CCCcEEEEECCC-C--eEEEEecC---------ccccEEEEEecCCCeEE-EeecCCeEEEE
Q 011978 201 WEPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDGVIY-TGSQDCTIKVW 266 (473)
Q Consensus 201 ~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~-~--~~~~~~~~---------h~~~v~~~~~~~~~~l~-s~~~d~~i~~w 266 (473)
|+| ++.++++++ .++.+.+||+.. + ..+..+.. +...+.+++|++++.++ +...++.|++|
T Consensus 93 ~sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 93 VDE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY 167 (347)
T ss_dssp EET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred ECC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence 766 556677766 789999999962 2 22332221 12347889999988644 44567889999
Q ss_pred ECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEe
Q 011978 267 ETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (473)
Q Consensus 267 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 345 (473)
++. +++..... .+.
T Consensus 168 ~~~~~g~~~~~~--------~~~--------------------------------------------------------- 182 (347)
T 3hfq_A 168 NVSDAGQLSEQS--------VLT--------------------------------------------------------- 182 (347)
T ss_dssp EECTTSCEEEEE--------EEE---------------------------------------------------------
T ss_pred EECCCCcEEEee--------eEE---------------------------------------------------------
Confidence 987 33321100 000
Q ss_pred CCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCC--Cce--EEEeeCCc------cCEEEEEEecCC
Q 011978 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT--GKF--VAVFRGHV------GPVYQISWSADS 414 (473)
Q Consensus 346 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~--~~~--~~~~~~h~------~~v~~v~~sp~g 414 (473)
......+..++|+|||++|++ +..++.|++|++.. ++. +..+.... ..+..++|+|||
T Consensus 183 -----------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 183 -----------MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp -----------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred -----------cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 000113567899999996666 45678999999874 543 22333222 348899999999
Q ss_pred CEE-EEEeCCCcEEEEECCC---CceeecccccCCCEEEEEEeeCCCEEEEEeCC-CcEEec
Q 011978 415 RLL-LSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLW 471 (473)
Q Consensus 415 ~~l-~s~s~Dg~i~iwd~~~---~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~~w 471 (473)
++| ++...++.|.+|++.. .+....+..+...+..++|+|||++|++++.+ +.+.+|
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 987 5556789999999973 24455566666678899999999999888765 899998
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.4e-20 Score=172.77 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=170.5
Q ss_pred cCCcccEEEEEECCCCCeEEEEeC-CCeEEEEeCCCCce-eEEEcCCCCCEEEEEECCCCCeEEEEecCC---eEEEeeC
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDP 179 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg---~i~iwd~ 179 (473)
..+...+ .++|+|+|+++++++. ++.|.+||+.+++. ......+..+..+++|+|||++|+++..++ .|.+||+
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence 3345556 9999999997776665 89999999998876 556666666666699999999999655553 8999999
Q ss_pred CCCccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCc-EEEEECCCCeEE----EEecCccccEEEEEecCCCe
Q 011978 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD-ARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV 253 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~-i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~ 253 (473)
.+++.... +. +.....++.|+| +++ .+++...++. +.+|++.....+ ...........+++|++++.
T Consensus 116 ~~~~~~~~-~~-~~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~ 188 (331)
T 3u4y_A 116 LKNKFIST-IP-IPYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN 188 (331)
T ss_dssp TTTEEEEE-EE-CCTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS
T ss_pred CCCCeEEE-EE-CCCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC
Confidence 98875443 22 233457788877 444 4455566688 999998753322 11113344578899999984
Q ss_pred -EE-EeecCCeEEEEECCCCce---eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 254 -IY-TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 254 -l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
++ ++..++.|++||+.+++. +..+.
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-------------------------------------------------- 218 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENITLLNAVG-------------------------------------------------- 218 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEE--------------------------------------------------
T ss_pred EEEEEeCCCCeEEEEECCCCcccceeeecc--------------------------------------------------
Confidence 44 455789999999887765 22111
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEEeeCC----
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGH---- 401 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~~~~h---- 401 (473)
....+..++|+|||++|+.++ .++.|.+||..+++. +..+..+
T Consensus 219 ------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 268 (331)
T 3u4y_A 219 ------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID 268 (331)
T ss_dssp ------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred ------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence 012345689999999776665 477899999999876 4433322
Q ss_pred c---cCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCce
Q 011978 402 V---GPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKL 436 (473)
Q Consensus 402 ~---~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~ 436 (473)
. .....++|+|||++|++++. ++.|.+||+.....
T Consensus 269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 1 12356899999998866654 66999999987543
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=4.7e-21 Score=183.64 Aligned_cols=240 Identities=14% Similarity=0.089 Sum_probs=164.8
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCC----------ceeE-----EEcCCCCCEEEEEECCCCCeEE----E
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----S 167 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~----------~~~~-----~~~~~~~~v~~l~~s~dg~~l~----s 167 (473)
+...++.+++++++.++++++.|+ +++|+.... .... ....+...|.+++|+|+|++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345688999999999999999888 899874210 0111 1123566799999999999999 7
Q ss_pred EecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 011978 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (473)
Q Consensus 168 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (473)
|+.|+.|++||+.++... .... . +.-..+..+.+|...|.+++
T Consensus 114 gs~d~~v~iwd~~~~~~~------~~~~--------------~-----------------~~~~~~~~~~~h~~~V~~v~ 156 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNE------AKQQ--------------K-----------------RPFAYHKLLKDAGGMVIDMK 156 (434)
T ss_dssp TTTEEEEEEEEHHHHHCT------TCSS--------------C-----------------CCSEEEECCCSGGGSEEEEE
T ss_pred cCCCceEEEEEccccccC------CcCC--------------c-----------------ceeeeeeccCCCCCceEEEE
Confidence 888999999997643100 0000 0 00011223457889999999
Q ss_pred ecCC-C-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 248 WGGD-G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 248 ~~~~-~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
|+++ + .+++++.||+|++||++++..+..
T Consensus 157 ~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------------------------- 187 (434)
T 2oit_A 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCA------------------------------------------------- 187 (434)
T ss_dssp ECSSCTTEEEEEETTSCEEEEEESSSEEEEE-------------------------------------------------
T ss_pred ECCCCCCEEEEEECCCeEEEEEcCCCcceee-------------------------------------------------
Confidence 9986 4 688999999999999887532211
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC----
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH---- 401 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h---- 401 (473)
..+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..|
T Consensus 188 ------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 188 ------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp ------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred ------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 11355678999999999999999999999999998 6655555443
Q ss_pred ---ccCEEEEEEecCCCEEEEE-eCCCc------EEEEECCCCce-----eecc-------cccCCCEEEEEEeeCCCEE
Q 011978 402 ---VGPVYQISWSADSRLLLSG-SKDST------LKVWDIRTQKL-----KQDL-------PGHADEVFAVDWSPDGEKV 459 (473)
Q Consensus 402 ---~~~v~~v~~sp~g~~l~s~-s~Dg~------i~iwd~~~~~~-----~~~~-------~~h~~~i~~l~~s~d~~~l 459 (473)
...|.+++|++++.++++. +.||. +++|++...+. ...+ .+....-+.+.+-+|.+++
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~ 316 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV 316 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEE
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEE
Confidence 3389999999998887653 34543 89999976421 1111 1222233344555777777
Q ss_pred EEEeC
Q 011978 460 ASGGK 464 (473)
Q Consensus 460 ~s~~~ 464 (473)
+.++.
T Consensus 317 ~v~s~ 321 (434)
T 2oit_A 317 LAASA 321 (434)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 66554
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.4e-20 Score=174.57 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=183.8
Q ss_pred CeEEEEecCCeEEEeeCCCCccccccCCCcCC-cEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCCCeEEEEecC-c
Q 011978 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSG-H 239 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~~~~~~~~~~-h 239 (473)
++|++++.++.|.+||..+++.......++.. .+..+.|+| ++.+ +++++.++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence 47889999999999999988765433323322 356677766 4434 56667789999999999887765542 2
Q ss_pred ----cccEEEEEecCCC-eEEEee------------cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccC
Q 011978 240 ----TLAVTCVKWGGDG-VIYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (473)
Q Consensus 240 ----~~~v~~~~~~~~~-~l~s~~------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (473)
...+.+++|++++ .++++. .++.|.+||..+++.+..+.. ...+..++++++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d---------- 145 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD---------- 145 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----------
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----------
Confidence 2256678999988 566664 579999999998887766543 223344444443
Q ss_pred CCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC
Q 011978 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~ 382 (473)
...++.+ ++.+.+||....... ..+..+. ....++|+|+|++++..+.++
T Consensus 146 --------------------------g~~l~~~--~~~i~~~d~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 146 --------------------------GSKLYGL--GRDLHVMDPEAGTLV-EDKPIQS-WEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp --------------------------SSCEEEE--SSSEEEEETTTTEEE-EEECSTT-TTTTTBCCCBCCCCCCCCTTT
T ss_pred --------------------------CCEEEEe--CCeEEEEECCCCcEe-eeeeccc-cCCCceeCCCccEEeeeccCC
Confidence 1234554 678999998654322 2222211 011237899988776554332
Q ss_pred ------------------------cEEEEeCCCCceE-EEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 383 ------------------------SIKLWNGTTGKFV-AVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 383 ------------------------~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
.|.+||..+++.. ..+..+...+.+++|+|||++|+++ ++.|++||+.+++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~ 273 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI 273 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc
Confidence 4689999998764 2344566678899999999999888 789999999998877
Q ss_pred ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 438 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 438 ~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..+..+ ..+.+++|+|||++|++++.|+.|++|+
T Consensus 274 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 274 KRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 666543 4578999999999999999999999996
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=3.3e-20 Score=175.82 Aligned_cols=293 Identities=13% Similarity=0.125 Sum_probs=193.6
Q ss_pred EEeCCCCceeEEEcCCCCCEEE-----EEECCCCCeEEEEec-CC--eEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978 134 LWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (473)
Q Consensus 134 iwd~~~~~~~~~~~~~~~~v~~-----l~~s~dg~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 205 (473)
.+|..++.....+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+....|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp-- 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP-- 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT--
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC--
Confidence 3466777777777777766666 889999999998887 66 48888998876543 3344444333445655
Q ss_pred cCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEe--cCCCeEEE-----------------------eecC
Q 011978 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYT-----------------------GSQD 260 (473)
Q Consensus 206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~l~s-----------------------~~~d 260 (473)
++.+++.++.++.+.+||+.+++.......+...+....| ++++.++. ...+
T Consensus 91 ---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 91 ---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred ---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 6778999999999999999998876666555555544443 77775443 2245
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecc-cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC--
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-- 337 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 337 (473)
..|.+||+.+++.. .+..+...+..+.++| +.. .++..+.
T Consensus 168 ~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~ 210 (388)
T 3pe7_A 168 CRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDS------------------------------------TVAFCHEGP 210 (388)
T ss_dssp EEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred ceEEEEECCCCceE-EeecCCccccccEECCCCCC------------------------------------EEEEEEecC
Confidence 78999999988654 4444555677788877 532 2222222
Q ss_pred ----CceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECC-C----cEEEEeCCCCceE--EEeeCCccC
Q 011978 338 ----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD-K----SIKLWNGTTGKFV--AVFRGHVGP 404 (473)
Q Consensus 338 ----d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d-~----~v~lwd~~~~~~~--~~~~~h~~~ 404 (473)
...+.++|..... ...+..+. ..+..++|+|||+.|+..+.+ + .|++||+.+++.. ..+.++...
T Consensus 211 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 288 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHL 288 (388)
T ss_dssp TTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEE
T ss_pred CCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceee
Confidence 3367777754332 22233333 357788999999988765542 2 3999999988743 333331111
Q ss_pred ---EEEEEEecCCCEEEEE---------eCCCcEEEEECCCCceeecccccCC-----------CEEEEEEeeCCCEEEE
Q 011978 405 ---VYQISWSADSRLLLSG---------SKDSTLKVWDIRTQKLKQDLPGHAD-----------EVFAVDWSPDGEKVAS 461 (473)
Q Consensus 405 ---v~~v~~sp~g~~l~s~---------s~Dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~s~d~~~l~s 461 (473)
...++|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+..++|+|||++|+.
T Consensus 289 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 289 MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 1123799999988754 4466899999988765 34444444 4778899999998886
Q ss_pred Ee-CCCcEEecc
Q 011978 462 GG-KDRVLKLWM 472 (473)
Q Consensus 462 ~~-~D~~i~~w~ 472 (473)
++ .++...||.
T Consensus 368 ~s~~~g~~~l~~ 379 (388)
T 3pe7_A 368 TSDVHGKPALYL 379 (388)
T ss_dssp EECTTSSCEEEE
T ss_pred EecCCCceeEEE
Confidence 65 577777774
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=4.3e-21 Score=192.08 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=166.4
Q ss_pred CCCEEEEEECCCCCeEEEEec-CCeEEEeeCCCCccccccCCCcC-CcEEEEEeceeccCCCCceEEEeeC---CCcEEE
Q 011978 150 KNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASK---DGDARI 224 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~i 224 (473)
..+|.+++|+|||+.|++++. ||++++|++.+++.. . +..|. ..+..+.|+| + ..+++++. +...++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~-lt~~~~~~~~~~~~sp-----d-~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-K-LNREPINSVLDPHYGV-----G-RVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-E-CCSSCCSEECEECTTC-----S-EEEEEEECSTTSCCEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-e-eecccccccccccCCC-----C-eEEEEeccCCCCcceEE
Confidence 457999999999999999887 999999998666543 2 33444 5788888876 3 35555554 455666
Q ss_pred EECCC---CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecccc
Q 011978 225 WDVSL---RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 225 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (473)
|.+.. +........+...+.++++++++.+++++.++.+.+||+.+++......
T Consensus 93 ~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----------------------- 149 (582)
T 3o4h_A 93 FKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----------------------- 149 (582)
T ss_dssp EEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------------------
T ss_pred EEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------------------
Confidence 65432 2222222222222334444444455555555556699887664321100
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d 381 (473)
+.. .+++|||||++||+++.|
T Consensus 150 ---------------------------------------------------------~~~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 150 ---------------------------------------------------------LPG--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp ---------------------------------------------------------ESS--CEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------------------CCC--ceEEECCCCCEEEEEEEc
Confidence 011 568899999999988877
Q ss_pred ----CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeecccccCCCEEEEE----
Q 011978 382 ----KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHADEVFAVD---- 451 (473)
Q Consensus 382 ----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~---- 451 (473)
+.|++||+.+++.. .+..|.+.+..++|||||++|++++.|+ .|++||+.+++.. .+.+|...+..+.
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 78999999988765 5677888999999999999999888898 8999999988877 7777776666666
Q ss_pred ----EeeCCCEEEEEeCCCcEEecc
Q 011978 452 ----WSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 452 ----~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|||||+.+++++.|+++++|.
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999996
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.1e-19 Score=169.52 Aligned_cols=254 Identities=13% Similarity=0.153 Sum_probs=169.6
Q ss_pred CcccEEEEEECCCCCeEEEEeC---CCeEEEEeCCCCc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCC
Q 011978 107 HTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ 180 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~ 180 (473)
+...+..++|+|||+ |++++. ++.|++||+.++. .+.....+...+..++|+|||++|++++ .++.+.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999 555543 6899999997665 3333345667788999999999998888 67999999985
Q ss_pred C-Cccc--ccc-CCC-------cCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-CCeEEE--EecC-ccccEEE
Q 011978 181 T-GKPS--GNP-LSG-------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSG-HTLAVTC 245 (473)
Q Consensus 181 ~-~~~~--~~~-~~~-------~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-~~~~~~--~~~~-h~~~v~~ 245 (473)
. +... ... ..+ +...+.++.|+| ++..+++...++.|.+||+. .++... .+.. .......
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 3 3211 110 111 123467787776 44566667778899999998 454322 1222 2235778
Q ss_pred EEecCCCe-EEE-eecCCeEEEEECCC--CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 246 VKWGGDGV-IYT-GSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 246 ~~~~~~~~-l~s-~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
++|+++|. ++. +..++.+++|++.. ++... . ..+...+
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~-------~~~~~~~------------------------------ 233 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-L-------GIVKTIP------------------------------ 233 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE-E-------EEEESSC------------------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE-e-------eeeeecC------------------------------
Confidence 99999984 544 56788999998763 32210 0 0000000
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE-EEEECCCcEEEEeCCC---CceEEE
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT---GKFVAV 397 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l-asgs~d~~v~lwd~~~---~~~~~~ 397 (473)
.. ......+..++|+|||++| ++...++.|.+||+.. .+.+..
T Consensus 234 --------------------------~~-------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 234 --------------------------AD-------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp --------------------------TT-------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred --------------------------CC-------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 00 0011347789999999987 4556689999999872 245556
Q ss_pred eeCCccCEEEEEEecCCCEEEEEeCC-CcEEEEE--CCCCcee
Q 011978 398 FRGHVGPVYQISWSADSRLLLSGSKD-STLKVWD--IRTQKLK 437 (473)
Q Consensus 398 ~~~h~~~v~~v~~sp~g~~l~s~s~D-g~i~iwd--~~~~~~~ 437 (473)
+..+...+..++|+|||++|++++.+ +.|.+|+ ..+++..
T Consensus 281 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 281 ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 66666678899999999998888764 8999994 4555543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=1.7e-18 Score=162.45 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=175.3
Q ss_pred CcccEEEEEECCCCCeEEEEeCC----CeEEEEeCCC--Cc--eeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEe
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW 177 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d----~~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iw 177 (473)
|...+..++|+|||++|++++.+ +.|.+|++.. +. .+.....+......+++ ++++|++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 55667789999999999999876 7999998865 33 22333445556777888 888888776 57899999
Q ss_pred eCCCCccccccC-------------CCcCCcEEEEEeceeccCCCCceE-EEeeCCCcEEEEECCCCeE-----------
Q 011978 178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKC----------- 232 (473)
Q Consensus 178 d~~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~~~~~-~s~s~dg~i~iwd~~~~~~----------- 232 (473)
++.......... ..+...+.++.|+| +++++ ++...++.+.+|++.....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 987543221110 11122356677776 45545 4445588999998875331
Q ss_pred --EEEecCccccEEEEEecCCCe-EEEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 233 --VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 233 --~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
......+......++|+++|. +++++ .++.|.+||+.+++.... ..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~--------~~~~-------------------- 252 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI--------QTVA-------------------- 252 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE--------EEEE--------------------
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe--------EEEe--------------------
Confidence 112223445678899999984 65555 689999999876543110 0000
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC--CcEEE
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKL 386 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d--~~v~l 386 (473)
....+......++|+|||++|+++..+ +.|.+
T Consensus 253 ----------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 253 ----------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ----------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred ----------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 000112235689999999998776654 89999
Q ss_pred EeCC--CCc--eEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEE--CCCCceeecc-cccCCCEEEEEEe
Q 011978 387 WNGT--TGK--FVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWD--IRTQKLKQDL-PGHADEVFAVDWS 453 (473)
Q Consensus 387 wd~~--~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd--~~~~~~~~~~-~~h~~~i~~l~~s 453 (473)
|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|+ ..+++..... ..+...+.++.|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9985 454 3444444 45678999999999988887 678999965 4566655433 2244578888886
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=6.6e-19 Score=180.99 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=200.2
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-----EEEEEECCCCCeEEEEecC---------CeEE
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ 175 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~l~~s~dg~~l~s~~~d---------g~i~ 175 (473)
...+++|+|||++++++ |++|++||+.++.+...+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 34578999999999886 999999999999877667766533 2347899999999998876 5677
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccE-----------
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV----------- 243 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v----------- 243 (473)
+||+.+++.. .+..|...+....|+| ++.+++.+ .++.|.+||+.++..... ..++...+
T Consensus 96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 9999998754 3566777899999988 56677776 578999999988765442 22333322
Q ss_pred ------EEEEecCCCe-EEEeecC-C-----------------------------------eEEEEECCC---Cc--eee
Q 011978 244 ------TCVKWGGDGV-IYTGSQD-C-----------------------------------TIKVWETTQ---GK--LIR 275 (473)
Q Consensus 244 ------~~~~~~~~~~-l~s~~~d-~-----------------------------------~i~~wd~~~---~~--~~~ 275 (473)
..+.|+|||. |+.++.| + +|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 2478999994 6555432 2 466777776 52 122
Q ss_pred eee------ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 276 ~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
.+. ++...+..++++|+..+... .+.....+..|.+||...+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~--------------------------------~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQ--------------------------------WLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEE--------------------------------EEESSTTEEEEEEEEEETT
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEE--------------------------------EeCCCCCEEEEEEEECCCC
Confidence 232 25556666766665321100 0111234457899997665
Q ss_pred C----CC-eeee--cCccccee-----EEEECCCCcEEE-EEEC-C--CcEEEEeCCCCceEEEeeCCccCEEEEEEecC
Q 011978 350 K----QP-KTRM--TGHQQLVN-----HVYFSPDGQWVA-SASF-D--KSIKLWNGTTGKFVAVFRGHVGPVYQISWSAD 413 (473)
Q Consensus 350 ~----~~-~~~~--~~~~~~v~-----~v~~sp~g~~la-sgs~-d--~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~ 413 (473)
. .. ...+ .+|..++. .++|+|||+.|+ ..+. + ..|++||..+++......+ ...|..+. .+|
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d 373 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALT 373 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EEC
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEE-EEe
Confidence 4 11 1111 34555554 789999999887 6664 3 3688889887766554444 44565544 245
Q ss_pred CCEEEEEeCC-----C--cEEEEECCCCceeeccc----ccCCCEEEEEEeeCCCEEEEEe
Q 011978 414 SRLLLSGSKD-----S--TLKVWDIRTQKLKQDLP----GHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 414 g~~l~s~s~D-----g--~i~iwd~~~~~~~~~~~----~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
++.|+..+.. + .|+..++..++....+. +.......+.||||+++++...
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 6655544432 3 35555555444332333 2335678899999999876544
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=8.2e-19 Score=164.57 Aligned_cols=270 Identities=11% Similarity=0.089 Sum_probs=169.5
Q ss_pred CCeEEEEe----CCCeEEEEeCC--CCceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeCCC--Cccccc
Q 011978 120 GRQLASGS----GDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQT--GKPSGN 187 (473)
Q Consensus 120 ~~~lat~s----~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~~~--~~~~~~ 187 (473)
..+++.|+ .++.|.+|.+. +++.......+......++|+|||++|++++.+ +.|.+|++.. ++..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-- 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-- 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--
Confidence 34455554 46789999764 443322111156667889999999999998875 7888887653 2110
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVW 266 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~w 266 (473)
. +.....+......+++ ....++++ ..++.+.+|
T Consensus 91 ----------~----------------------------------~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 91 ----------L----------------------------------LNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ----------E----------------------------------EEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred ----------E----------------------------------eeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence 0 0011112223444555 23344444 467899999
Q ss_pred ECCCCceeeeee------c--------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 267 ETTQGKLIRELK------G--------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 267 d~~~~~~~~~~~------~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
++.....+..+. + +...+..++++|+.. ..+
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~-----------------------------------~l~ 170 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK-----------------------------------YLL 170 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS-----------------------------------EEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC-----------------------------------EEE
Confidence 986543322111 0 011223444444321 134
Q ss_pred EEecCCceEEEEeCCCCCC------C------eeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCce--EEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQ------P------KTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAV 397 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~------~------~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~--~~~ 397 (473)
+++..++.+.+|++..... . ......+...+..++|+|||+++++++ .++.|.+||+.+++. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 5556688999998765432 1 122233445678999999999888777 689999999987754 222
Q ss_pred e---eCCccCEEEEEEecCCCEEEEEeCC--CcEEEEECC--CCc--eeecccccCCCEEEEEEeeCCCEEEEEe-CCCc
Q 011978 398 F---RGHVGPVYQISWSADSRLLLSGSKD--STLKVWDIR--TQK--LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRV 467 (473)
Q Consensus 398 ~---~~h~~~v~~v~~sp~g~~l~s~s~D--g~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~s~d~~~l~s~~-~D~~ 467 (473)
+ ..+.....+++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 2 2334557899999999998776654 899999995 344 3334443 45678999999999998887 6788
Q ss_pred EEecc
Q 011978 468 LKLWM 472 (473)
Q Consensus 468 i~~w~ 472 (473)
|.+|.
T Consensus 330 v~v~~ 334 (361)
T 3scy_A 330 IQIFE 334 (361)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99863
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.1e-19 Score=165.91 Aligned_cols=234 Identities=11% Similarity=0.077 Sum_probs=174.0
Q ss_pred CCEEEEEECCCCCeEEEEec-------CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCc-eEEEeeCCCcE
Q 011978 151 NWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDA 222 (473)
Q Consensus 151 ~~v~~l~~s~dg~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-~~~s~s~dg~i 222 (473)
..+..++|+|+|++|++++. ++.|.+||..+++....... ...+.++.|+| ++. .+++...++.|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~-----dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINN-----TTQTLWFGNTVNSAV 113 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEET-----TTTEEEEEETTTTEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECC-----CCCEEEEEecCCCEE
Confidence 45789999999999988774 56899999998875433211 22344556655 444 45566668999
Q ss_pred EEEECCCCeEEEEecCccc---------cEEEEEecCCC-eEEEee--cCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 223 RIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~-~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
.+||..+++.+..+..+.. .+.++.|++++ .++.++ .++.|.+||..+++.+..+..
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------- 182 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------- 182 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----------
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----------
Confidence 9999999988777655432 26889999887 455544 578899999887765443221
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp 370 (473)
+...+.+++|+|
T Consensus 183 --------------------------------------------------------------------~~~~~~~~~~s~ 194 (353)
T 3vgz_A 183 --------------------------------------------------------------------TGKMSTGLALDS 194 (353)
T ss_dssp --------------------------------------------------------------------CCTTCCCCEEET
T ss_pred --------------------------------------------------------------------CCCccceEEECC
Confidence 011245678999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCceEEEeeC----CccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeecccccCC
Q 011978 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG----HVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHAD 445 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~~~~~~~~~~----h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~ 445 (473)
+|++|++++.++.|.+||..+++.+..+.. +...+.+++|+|+|++|+.++. ++.|.+||+.+++....+.....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 999999999999999999999998877654 5567889999999998777665 58999999999887766654332
Q ss_pred CEEEEEEeeCCCEEEEEe-CCCcEEecc
Q 011978 446 EVFAVDWSPDGEKVASGG-KDRVLKLWM 472 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~-~D~~i~~w~ 472 (473)
..+.|+|||++++.++ .++.|.+|+
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 5789999999665554 789999986
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=8.8e-19 Score=163.87 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=194.3
Q ss_pred CCCeEEEEe------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCC
Q 011978 119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (473)
Q Consensus 119 ~~~~lat~s------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~ 182 (473)
++++++... .|+.|.+||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556665543 3789999999998877777665554 899999999999886 3678999999877
Q ss_pred ccccccCCC-----cCCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEecCCC--
Q 011978 183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-- 252 (473)
Q Consensus 183 ~~~~~~~~~-----~~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-- 252 (473)
+........ +......+.++| ++++++++.. +++|.+||+.+++.+.. +... . ...+.+.+++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~ 164 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR 164 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence 654322111 112223344443 6667777653 68999999999988776 4321 1 2224455554
Q ss_pred eEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce
Q 011978 253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (473)
.+++.+.||.+.+|++.. ++...... .. ..+..... ..+. ........
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~--~~----~~~~~~~~----------~~~~---------------~~~~~g~~ 213 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSR--SK----QMFSVKDD----------PIFI---------------APALDKDK 213 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEE--CC----CCSCTTTS----------CBCS---------------CCEECSSE
T ss_pred eEEEECCCCcEEEEEECCCCcEeeecc--cc----ceEcCCCC----------ceEE---------------EecccCCE
Confidence 577889999999998765 44331110 00 00000000 0000 00001124
Q ss_pred EEEecCCceEEEEeCCCCCCCeee-e--cC----c----ccceeEEEECCCCcEEEEEEC-----------CCcEEEEeC
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTR-M--TG----H----QQLVNHVYFSPDGQWVASASF-----------DKSIKLWNG 389 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~-~--~~----~----~~~v~~v~~sp~g~~lasgs~-----------d~~v~lwd~ 389 (473)
++..+.++.+.++|.......... . .. + ......++|+|+++.++.+.. .+.|.+||.
T Consensus 214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 455567888999997543221110 0 00 0 111223789999887776543 347999999
Q ss_pred CCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeecccccCCCEEEEEEeeCCC
Q 011978 390 TTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ--KLKQDLPGHADEVFAVDWSPDGE 457 (473)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~h~~~i~~l~~s~d~~ 457 (473)
.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.++..+...-..+.++|||+
T Consensus 294 ~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 294 KTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999998876 899999999999998886 99999999999 88888766667788999999986
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=6.3e-20 Score=175.83 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=141.6
Q ss_pred cEEEEEecCCC-eEEEeecCCeEEEEECCCCce----------eee-----eeccCceEEEEEecccceeeeccccCCCc
Q 011978 242 AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL----------IRE-----LKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 242 ~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~----------~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
.+..+++++++ .+++++.|+ +++|+...... +.. ...+...|.+++++++.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg------------ 104 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN------------ 104 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS------------
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC------------
Confidence 46677887754 677777777 89987532110 000 01123456777776542
Q ss_pred ccCCHHHHHHHHHhhhhcccCCCCceEE----EecCCceEEEEeCCCC-----CC--C---eeeecCcccceeEEEECCC
Q 011978 306 QYSSPEEMKKAALERYNKIKGNAPERLV----SGSDDFTMFLWEPAVS-----KQ--P---KTRMTGHQQLVNHVYFSPD 371 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~-----~~--~---~~~~~~~~~~v~~v~~sp~ 371 (473)
..++ +++.|+.+++||+... .. + ...+.+|...|.+++|+|+
T Consensus 105 ------------------------~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 160 (434)
T 2oit_A 105 ------------------------LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT 160 (434)
T ss_dssp ------------------------CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS
T ss_pred ------------------------CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC
Confidence 3466 7899999999997543 11 1 2345678999999999998
Q ss_pred -CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------c
Q 011978 372 -GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------H 443 (473)
Q Consensus 372 -g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------h 443 (473)
+.+||+++.||+|++||++++..+....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+.. |
T Consensus 161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 161 VPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp CTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred CCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 8999999999999999999987777777899999999999999999999999999999998 444433332 2
Q ss_pred CCCEEEEEEeeCCCEEEEE-eCCCc------EEecc
Q 011978 444 ADEVFAVDWSPDGEKVASG-GKDRV------LKLWM 472 (473)
Q Consensus 444 ~~~i~~l~~s~d~~~l~s~-~~D~~------i~~w~ 472 (473)
...|.++.|++++.++++. +.||. +++|.
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 3379999999998887543 34433 66774
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=185.31 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=188.2
Q ss_pred cEEEEEECCCCCeEEEEeC---------CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC
Q 011978 110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~ 180 (473)
.|.+++|||||++||+++. |+.|++||+.+++.+.. ......+.+++|||||+.|+.+. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4889999999999998876 78999999998865210 11135688999999999999885 7899999998
Q ss_pred CCccccccCCCcCCcE-----------------EEEEeceeccCCCCceEEEeeCCC-----------------------
Q 011978 181 TGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG----------------------- 220 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~v-----------------~~i~~~~~~~~~~~~~~~s~s~dg----------------------- 220 (473)
+++.......++...+ .++.|+| ++.++++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 8775433333443333 3677776 667888877552
Q ss_pred -----------cEEEEECCCCeEE---E-----EecCccccEEEEEecCCCeEE-EeecC----CeEEEEE----CCCCc
Q 011978 221 -----------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDGVIY-TGSQD----CTIKVWE----TTQGK 272 (473)
Q Consensus 221 -----------~i~iwd~~~~~~~---~-----~~~~h~~~v~~~~~~~~~~l~-s~~~d----~~i~~wd----~~~~~ 272 (473)
.|++||+.+++.. . .+.+|...+.+++|++|+.++ +.... ..|.+|| ..+++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999887642 1 134688889999999998644 43222 2488899 77776
Q ss_pred eeeee----eccCceEE-----EEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce-EEEecCCc--e
Q 011978 273 LIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDF--T 340 (473)
Q Consensus 273 ~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~--~ 340 (473)
....+ ..+..++. .+.++++.. .. ++++..++ .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-----------------------------------~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAI-----------------------------------SYYKIFSDKDGYKH 338 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSS-----------------------------------CEEEEEECTTSCEE
T ss_pred eEEEEecccccCCceEccccCCccEECCCCC-----------------------------------eEEEEEEccCCceE
Confidence 65544 34444443 344443311 11 22343444 5
Q ss_pred EEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC-----CcEEEEeCCC--Cc-eEEEee----CCccCEEEE
Q 011978 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT--GK-FVAVFR----GHVGPVYQI 408 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d-----~~v~lwd~~~--~~-~~~~~~----~h~~~v~~v 408 (473)
+.+|+..... ...+..+...+..+.++ +++.|+..+.+ +..++|.+.. +. ....+. +|...+..+
T Consensus 339 l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 415 (719)
T 1z68_A 339 IHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTA 415 (719)
T ss_dssp EEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEE
T ss_pred EEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEE
Confidence 6677765433 33444555567777777 88877777665 7888987653 42 123333 266778899
Q ss_pred EEecCCCEEEE-EeCC--CcEEEEECCCCce
Q 011978 409 SWSADSRLLLS-GSKD--STLKVWDIRTQKL 436 (473)
Q Consensus 409 ~~sp~g~~l~s-~s~D--g~i~iwd~~~~~~ 436 (473)
.|+||+++++. ++.+ ..+++||+.+++.
T Consensus 416 ~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 416 SFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp EECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred EECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 99999987774 4433 4688999877654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2.4e-18 Score=161.54 Aligned_cols=268 Identities=10% Similarity=0.102 Sum_probs=169.9
Q ss_pred EEEEeCC--CeEEEEeC--CCCceeE--EEc-CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC-CCcccccc-CCCcC
Q 011978 123 LASGSGD--TTVRLWDL--NTQTPMF--KCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNP-LSGHK 193 (473)
Q Consensus 123 lat~s~d--~~i~iwd~--~~~~~~~--~~~-~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~-~~~~~~~~-~~~~~ 193 (473)
++.|+.. +.|.+|++ .+++... ... .....+..++|+|||++|++++.+ .|.+|++. +++..... ...+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~- 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG- 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-
Confidence 4555542 46777665 3443221 111 233457789999999999998888 99999986 66532110 0000
Q ss_pred CcEEEEEeceeccCCCCce--EEEee-------------CCCcEEEEECC-CCeEEEEec----CccccEEEEEecCCCe
Q 011978 194 KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGDGV 253 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~--~~s~s-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~ 253 (473)
.....+ .+++++++ ++++. .++++.+|++. .++....+. .+...+.+++|+++|.
T Consensus 83 g~~~~~-----~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 83 GHPRAN-----DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp SSGGGG-----CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccE-----EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 111112 23445553 33443 68999999997 455443332 2456788999999984
Q ss_pred -EEEee-cCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 254 -IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 254 -l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
++++. .++.|++||+. +++.... ..+
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~--------~~~------------------------------------------- 186 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELV--------GSV------------------------------------------- 186 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEE--------EEE-------------------------------------------
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEe--------eeE-------------------------------------------
Confidence 66554 46799999987 5543210 000
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEEEeCC--CCceEE---Eee-----
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKFVA---VFR----- 399 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~lwd~~--~~~~~~---~~~----- 399 (473)
....|...+..++|+|||++|++++. ++.|.+|+.. +++... .+.
T Consensus 187 ------------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 187 ------------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ------------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred ------------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 00011234678999999999988775 6899999765 565421 221
Q ss_pred --CCcc------CEEEEE-EecCCCEEEEEeCC-C-----cEEEEECC-CCceee---cccccCCCEEEEEEee---CCC
Q 011978 400 --GHVG------PVYQIS-WSADSRLLLSGSKD-S-----TLKVWDIR-TQKLKQ---DLPGHADEVFAVDWSP---DGE 457 (473)
Q Consensus 400 --~h~~------~v~~v~-~sp~g~~l~s~s~D-g-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~s~---d~~ 457 (473)
+|.. .+..++ |+|||++|++++.+ + +|.+|++. +++... ....+......++|+| ||+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 2222 588999 99999998876543 2 89999996 555432 2333444456789999 899
Q ss_pred EEEEEeCC-CcEEecc
Q 011978 458 KVASGGKD-RVLKLWM 472 (473)
Q Consensus 458 ~l~s~~~D-~~i~~w~ 472 (473)
+|++++.+ +.|++|.
T Consensus 323 ~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 323 WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEECSSSCEEEEEE
T ss_pred EEEEEEcCCCeEEEEE
Confidence 99999875 8999985
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=4e-19 Score=165.61 Aligned_cols=268 Identities=14% Similarity=0.103 Sum_probs=165.2
Q ss_pred EEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCce-EEEeeCCCcEEEEECCCCeEEE
Q 011978 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVI 234 (473)
Q Consensus 156 l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~~s~s~dg~i~iwd~~~~~~~~ 234 (473)
+++++++..+++++.+++|++||..+++.......+....+..+.|.| ++.+ +++...++.|.+||+.+++.+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-----DNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-----CCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 467788889999999999999999988754332222212355666665 4443 4566678999999999988776
Q ss_pred EecC-c-----cccEEEEEecCCC-eEEEeecC------------CeEEEEECCCCceee---eeeccCceEEEEEeccc
Q 011978 235 CLSG-H-----TLAVTCVKWGGDG-VIYTGSQD------------CTIKVWETTQGKLIR---ELKGHGHWVNSLALSTE 292 (473)
Q Consensus 235 ~~~~-h-----~~~v~~~~~~~~~-~l~s~~~d------------~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~~~~ 292 (473)
.+.. + ...+.+++|+++| .+++++.+ +.|.+||+.+++... .+..+ ..+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d 158 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADD 158 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTT
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCC
Confidence 6542 2 2336788999998 56776655 899999998855432 22221 12333434332
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc-cce--------
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLV-------- 363 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v-------- 363 (473)
.. ++.++. .+.+||....+. ...+..+. ...
T Consensus 159 ------------------------------------g~-l~~~~~--~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 159 ------------------------------------GS-LYVAGP--DIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp ------------------------------------SC-EEEESS--SEEEECTTTCCE-EEEECSTTCCCTTBCCCBCC
T ss_pred ------------------------------------Cc-EEEccC--cEEEEeCCCCce-eccccccccCCccccCccce
Confidence 12 333333 388888754332 11222111 110
Q ss_pred ---------------eEEEECCCCcEEEEEE-CCCcEEEEeCCCCceE-EEeeCCccCEEEEEEec-CCCEEEEEeCCCc
Q 011978 364 ---------------NHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFV-AVFRGHVGPVYQISWSA-DSRLLLSGSKDST 425 (473)
Q Consensus 364 ---------------~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~-~~~~~h~~~v~~v~~sp-~g~~l~s~s~Dg~ 425 (473)
..+++++++....... ....+..+|..+++.. ..+..+...+.+++|+| ||++++++ ++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~ 276 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR 276 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe
Confidence 1133333321110000 0011222455444321 12233455788999999 99999888 889
Q ss_pred EEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 426 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 426 i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
|++||+.+++....+..+ ..+.+++|+|||++|++++.++.|++|+
T Consensus 277 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 277 LAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence 999999998877666532 3567999999999999999999999996
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.2e-18 Score=163.25 Aligned_cols=287 Identities=16% Similarity=0.150 Sum_probs=182.7
Q ss_pred ccccCCcccEEE-----EEECCCCCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe
Q 011978 102 ATIAGHTEAVLS-----VAFSPDGRQLASGSG-DT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (473)
Q Consensus 102 ~~~~gh~~~V~~-----~~~sp~~~~lat~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~ 173 (473)
..+..|...... .+|+|||++|+.++. ++ .|.+||+.++.......++...+..+.|+|||+.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 345556655655 789999999998887 66 4888899888766555556555556789999999999999999
Q ss_pred EEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEE----------------------eeCCCcEEEEECCCCe
Q 011978 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------------------ASKDGDARIWDVSLRK 231 (473)
Q Consensus 174 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s----------------------~s~dg~i~iwd~~~~~ 231 (473)
|++||+.+++... ....+...+....|.. +.++..++. .+.+..|.+||+.+++
T Consensus 104 l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~---~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 104 LMRVDLATLEENV-VYQVPAEWVGYGTWVA---NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEETTTCCEEE-EEECCTTEEEEEEEEE---CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred EEEEECCCCccee-eeechhhcccccceeE---CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 9999999886532 2233334343333321 234444442 2345789999999886
Q ss_pred EEEEecCccccEEEEEecC-CCe-EEEeec------CCeEEEEECCCCceeeeeeccC--ceEEEEEecccceeeecccc
Q 011978 232 CVICLSGHTLAVTCVKWGG-DGV-IYTGSQ------DCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFD 301 (473)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~------d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~ 301 (473)
... +..+...+..+.|+| ++. |+.... ...|.++|...+.. ..+..+. ..+..+.++|+..
T Consensus 180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~------- 250 (388)
T 3pe7_A 180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS------- 250 (388)
T ss_dssp EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS-------
T ss_pred eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC-------
Confidence 544 334556788999999 884 544443 33788888765543 3333332 3566667776532
Q ss_pred CCCcccCCHHHHHHHHHhhhhcccCCCCceEEE-ecC----CceEEEEeCCCCCCCe-eeecCcccc---eeEEEECCCC
Q 011978 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSD----DFTMFLWEPAVSKQPK-TRMTGHQQL---VNHVYFSPDG 372 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~----d~~i~iwd~~~~~~~~-~~~~~~~~~---v~~v~~sp~g 372 (473)
.|+. +.. +..+++||+....... ....++... ...++|+|||
T Consensus 251 -----------------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 251 -----------------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp -----------------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 1222 111 2349999986554211 122221000 1223799999
Q ss_pred cEEEEE---------ECCCcEEEEeCCCCceEEEeeCCcc-----------CEEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 011978 373 QWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQISWSADSRLLLSGS-KDSTLKVWDI 431 (473)
Q Consensus 373 ~~lasg---------s~d~~v~lwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~ 431 (473)
+.|+.. ..+..|++||+.+++.. .+..|.. .+.+++|+|||+.|+..+ .+|...||.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 988854 44568999999987653 4444544 578899999999888766 4676666654
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=6.1e-18 Score=171.95 Aligned_cols=288 Identities=14% Similarity=0.023 Sum_probs=192.2
Q ss_pred ccccCCcccEEEEEECCCCCeEEEE--eCCCeEEEEeCCCCceeEEEcCCCCCEE---------EEEEC--CCCCe-EEE
Q 011978 102 ATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH-LVS 167 (473)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~--s~d~~i~iwd~~~~~~~~~~~~~~~~v~---------~l~~s--~dg~~-l~s 167 (473)
..+.+|...+..++|++++..+++. +.++...||....+.....+..|...+. ...|+ |||+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 4567899999999999887666766 5688999999654444556666665555 56565 99998 776
Q ss_pred Eec-CCeEEEeeCC--C-CccccccCCC-----cCCcEEEEEeceeccCCCCceEEEeeCC----------CcEEEEECC
Q 011978 168 GSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIWDVS 228 (473)
Q Consensus 168 ~~~-dg~i~iwd~~--~-~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~~~~~~s~s~d----------g~i~iwd~~ 228 (473)
++. +..|.+|+.. . +... .+.. |...+..+.|+| ++++++.++.+ ..|.+||+.
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 554 5678888876 3 4322 2333 566778888887 56788888776 589999998
Q ss_pred C------CeEEEEec-CccccEEEEEecCCCe-EEEeecC--------CeEEEEECC-CC---ceeeeeeccCceEEEEE
Q 011978 229 L------RKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVNSLA 288 (473)
Q Consensus 229 ~------~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d--------~~i~~wd~~-~~---~~~~~~~~~~~~v~~~~ 288 (473)
+ ++.. .+. .+...+..++|++||. |+.++.+ ..|++||+. ++ +.......+...+..+.
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 8 5543 344 5556778889999994 6656644 379999998 56 33333344466777777
Q ss_pred ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc--eEEEEeCCCCCCCeeeecCcccc----
Q 011978 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL---- 362 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~---- 362 (473)
++++. ..++++..++ .+..||..... .......+...
T Consensus 249 ~spdg------------------------------------~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 249 WAPDG------------------------------------SLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPL 291 (662)
T ss_dssp ECTTS------------------------------------CEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCC
T ss_pred ECCCC------------------------------------eEEEEECCCCCeEEEEEECCCCc-eeecccccccccCcc
Confidence 77653 2356666667 56666653322 11111222211
Q ss_pred ----eeEEEECCCCcEEEEEECCCcEEEE--eCCCCceEEEeeCCccCEEEE-EEecCCCEEEEEeCCC--cEEEEECCC
Q 011978 363 ----VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQI-SWSADSRLLLSGSKDS--TLKVWDIRT 433 (473)
Q Consensus 363 ----v~~v~~sp~g~~lasgs~d~~v~lw--d~~~~~~~~~~~~h~~~v~~v-~~sp~g~~l~s~s~Dg--~i~iwd~~~ 433 (473)
+..++|+|+++++++++. +.++|| |..+++ +..+..|.+.+..+ +++++...+++++.+. .|++||+.+
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 467899999999999998 999999 655555 66777787778777 4443333444555554 456667766
Q ss_pred Cce
Q 011978 434 QKL 436 (473)
Q Consensus 434 ~~~ 436 (473)
++.
T Consensus 370 g~~ 372 (662)
T 3azo_A 370 GRA 372 (662)
T ss_dssp CCE
T ss_pred Cce
Confidence 654
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=5.9e-18 Score=160.65 Aligned_cols=290 Identities=16% Similarity=0.143 Sum_probs=182.3
Q ss_pred EEeCCCCceeEEEcCCCCC-----EEEEEECCCCCeEEEEecC---CeEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978 134 LWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (473)
Q Consensus 134 iwd~~~~~~~~~~~~~~~~-----v~~l~~s~dg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 205 (473)
..|..++..+..+..+... +.+++|||||++|+..... ..|.+||+.+++... ...++......+.|+|
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp-- 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST-- 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT--
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC--
Confidence 3466666666666544333 6778999999998877543 478889998876432 2222221111234544
Q ss_pred cCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEE-------------------EEecCCCe-EEEe-----ecC
Q 011978 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDGV-IYTG-----SQD 260 (473)
Q Consensus 206 ~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~-l~s~-----~~d 260 (473)
++.+++.++.++.+.+||+.+++.......+...... +.|++++. ++.+ ..+
T Consensus 91 ---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 91 ---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred ---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 6778989999999999999988765555444332222 23455552 2222 456
Q ss_pred CeEEEEECCCCceeeeeeccCceEEEEEecc-cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC-
Q 011978 261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD- 338 (473)
Q Consensus 261 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d- 338 (473)
..|.+||+.+++..... .+...+..+.+++ +.. .++..+.+
T Consensus 168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~ 210 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS------------------------------------TVGFCHEGP 210 (396)
T ss_dssp EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred ceEEEEECCCCcEEeec-cCCcccccceECCCCCC------------------------------------EEEEEecCC
Confidence 78999999887754433 3455566677766 321 12222211
Q ss_pred -----ceEEEEeCCCCCCCeeeecCc--ccceeEEEECCCCcEEEEEECC-----CcEEEEeCCCCceEEEeeCCccCEE
Q 011978 339 -----FTMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 339 -----~~i~iwd~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
..|.+|+..... . ..+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++........ ...
T Consensus 211 ~~~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~ 286 (396)
T 3c5m_A 211 HDLVDARMWLVNEDGSN-V-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS 286 (396)
T ss_dssp SSSCSCCCEEEETTSCC-C-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE
T ss_pred CCCCCceEEEEECCCCc-e-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC
Confidence 457778764332 1 222222 2357889999999988877654 44999999988754433221 233
Q ss_pred EEEEec-CCCEEEEEe----------------CCCcEEEEECCCCceeecccccCC-----------CEEEEEEeeCCCE
Q 011978 407 QISWSA-DSRLLLSGS----------------KDSTLKVWDIRTQKLKQDLPGHAD-----------EVFAVDWSPDGEK 458 (473)
Q Consensus 407 ~v~~sp-~g~~l~s~s----------------~Dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~s~d~~~ 458 (473)
+.|+| ||+++++++ .++.|++||+.+++.. .+..+.. .+..+.|+|||++
T Consensus 287 -~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 287 -HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp -EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred -CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCe
Confidence 89999 999888765 3468999999877643 3444433 2556789999999
Q ss_pred EEEEeC-CCcEEecc
Q 011978 459 VASGGK-DRVLKLWM 472 (473)
Q Consensus 459 l~s~~~-D~~i~~w~ 472 (473)
|+.++. ++...||.
T Consensus 365 l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYI 379 (396)
T ss_dssp EEEEECTTSSCEEEE
T ss_pred EEEEecCCCCceEEE
Confidence 887764 56666663
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=8.5e-17 Score=148.63 Aligned_cols=248 Identities=13% Similarity=0.148 Sum_probs=179.4
Q ss_pred CCCEEEEEECCCCCeEEEEecC------------------------CeEEEeeCCCCccccccCCCcCCcEEEEEeceec
Q 011978 150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 205 (473)
-+.+.+++++|+|+.+++...+ +.|.+||..+++.......++-....++++.|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 3568999999999988887776 47999999888765433334445677887765
Q ss_pred cCCCCceEEEeeCCCcEEEEECCCCe-EEEEe---------cCccccEEEEEecC-CCeEEEee--cCCeEEEEECCCCc
Q 011978 206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVIYTGS--QDCTIKVWETTQGK 272 (473)
Q Consensus 206 ~~~~~~~~~s~s~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~l~s~~--~d~~i~~wd~~~~~ 272 (473)
++..+++...++.|++||..... .+..+ .++......+++++ ++.++.+. .++.|++|| .+|+
T Consensus 101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK 176 (329)
T ss_dssp ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence 45677888888999999986542 34444 34455788999998 77655554 589999998 5555
Q ss_pred eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (473)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 352 (473)
.+..+...+ ..+
T Consensus 177 ~~~~~~~~g------------------------------------------------------~~~-------------- 188 (329)
T 3fvz_A 177 FVTQWGEES------------------------------------------------------SGS-------------- 188 (329)
T ss_dssp EEEEECEEC------------------------------------------------------CSS--------------
T ss_pred EEEEeccCC------------------------------------------------------CCC--------------
Confidence 544321100 000
Q ss_pred eeeecCcccceeEEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEee--CCccCEEEEEEec------CCCEEEEEeCC
Q 011978 353 KTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSA------DSRLLLSGSKD 423 (473)
Q Consensus 353 ~~~~~~~~~~v~~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp------~g~~l~s~s~D 423 (473)
....++......++++|+ +.++++...++.|++||..+|+.+..+. .+...+.+++|+| +|+..++.+.+
T Consensus 189 -~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 189 -SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEP 267 (329)
T ss_dssp -SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCC
T ss_pred -CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCC
Confidence 000012234678999998 7888888888999999999899888874 4566789999999 33333333445
Q ss_pred CcEEEEECCCCceeecc---cccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 424 STLKVWDIRTQKLKQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 424 g~i~iwd~~~~~~~~~~---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..|++||..+++.+..+ .++.....+++++|||+.+++...+++|++|.
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 68999999999888776 35667799999999998889999999999985
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=1.5e-16 Score=147.07 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=174.6
Q ss_pred cccEEEEEECCCCCeEEEEeCC------------------------CeEEEEeCCCCceeEEEc-CCCCCEEEEEECCCC
Q 011978 108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG 162 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d------------------------~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg 162 (473)
-..+.+++++|+|+.+++.+.+ ++|.+||..+++...... ++-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888777 479999998887655443 444578999999999
Q ss_pred CeEEEEecCCeEEEeeCCCCc-cccccC--------CCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeE
Q 011978 163 KHLVSGSKAGELQCWDPQTGK-PSGNPL--------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC 232 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~ 232 (473)
+.+++...++.|++||..... .....- .++-....++++.|. .+..+++.+ .++.|++|| ..++.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 988888888999999986442 111110 234446777877652 345666665 689999999 55666
Q ss_pred EEEec----------CccccEEEEEecCC-CeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 233 VICLS----------GHTLAVTCVKWGGD-GVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 233 ~~~~~----------~h~~~v~~~~~~~~-~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
+..+. ++......++++++ +.+ ++...++.|++||..+|+.+..+...
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-------------------- 237 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-------------------- 237 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------------------
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------------------
Confidence 65553 23344788999987 654 45567889999998877766544211
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC------CCcE
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQW 374 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp------~g~~ 374 (473)
.+...+..++|+| +|+.
T Consensus 238 ---------------------------------------------------------~~~~~~~~~~~~pg~~~~~~g~~ 260 (329)
T 3fvz_A 238 ---------------------------------------------------------SFGRNVFAISYIPGFLFAVNGKP 260 (329)
T ss_dssp ---------------------------------------------------------TTTTCEEEEEEETTEEEEEECCC
T ss_pred ---------------------------------------------------------ccCCCcceeeecCCEEEEeCCCE
Confidence 0112234555666 3333
Q ss_pred EEEEECCCcEEEEeCCCCceEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 375 VASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 375 lasgs~d~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.++...+..|++||..+++.+..+. ++...+.+++++|+|.++++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333445689999999999988873 6777899999999998888888899999999864
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=8e-16 Score=139.12 Aligned_cols=241 Identities=15% Similarity=0.249 Sum_probs=170.2
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc------CCCCCEEEEEE-CCCCCeEEEEec-CCeEEE
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW-SADGKHLVSGSK-AGELQC 176 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~-s~dg~~l~s~~~-dg~i~i 176 (473)
.+|-..+.+++++|+++.+++...++.|++||... ..+..+. ++...+..+++ .+++..+++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 46777899999999999888888899999999874 4444442 23456889999 567766665543 899999
Q ss_pred eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--CccccEEEEEecCCCeE
Q 011978 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVI 254 (473)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l 254 (473)
|| .+++........+...+.++.+.| ++..+++...++.|.+||.. ++.+..+. ++...+.++++++++.+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 99 455543322233445677777765 44567777778999999965 44444443 45556889999998865
Q ss_pred EE-eecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEE
Q 011978 255 YT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (473)
Q Consensus 255 ~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (473)
+. ...++.|++||.. ++.+..+..
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~------------------------------------------------------ 202 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGG------------------------------------------------------ 202 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESC------------------------------------------------------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEcc------------------------------------------------------
Confidence 54 4568899999863 332221110
Q ss_pred EecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCCCCceEEEeeCCc--cCEEEEEE
Q 011978 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHV--GPVYQISW 410 (473)
Q Consensus 334 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~~~~~~~~~~~h~--~~v~~v~~ 410 (473)
.++...+..++++|+|+++++...++ .|++||. +++.+..+..+. ..+.++++
T Consensus 203 -----------------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 203 -----------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp -----------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred -----------------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 01113467899999999998888876 9999995 566676665543 34789999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
+|+|+++++ +.|++|++|+...
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCcEEEE-CCCCeEEEEEccc
Confidence 999987777 6799999999764
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.7e-17 Score=155.71 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=165.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCC-CCceeEEEc--CCCCCEEEEEECCCCCe--EEEEe-------------
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCT--GHKNWVLCIAWSADGKH--LVSGS------------- 169 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~-~~~~~~~~~--~~~~~v~~l~~s~dg~~--l~s~~------------- 169 (473)
...+..++|+|||++|++++.+ .|.+|++. +++...... .+ +...+++|+|||++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3457789999999999998888 99999997 665432221 11 23556899999995 44553
Q ss_pred cCCeEEEeeCC-CCccccccC---CCcCCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECC-CCeEE--EEec--Cc
Q 011978 170 KAGELQCWDPQ-TGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVS-LRKCV--ICLS--GH 239 (473)
Q Consensus 170 ~dg~i~iwd~~-~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~-~~~~~--~~~~--~h 239 (473)
.+|.+.+|++. +++...... ..+...+.++.|+| ++++++++. .++.|++||+. +++.. ..+. .|
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 68999999987 354321111 12445678888877 455666554 46799999998 66543 2232 23
Q ss_pred cccEEEEEecCCC-eEEEee-cCCeEEEEECC--CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 240 TLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 240 ~~~v~~~~~~~~~-~l~s~~-~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
...+..++|+++| .+++++ .+++|.+|++. +++...... .+...+
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~------------------------ 240 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------SFPLIP------------------------ 240 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------EEESSC------------------------
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------eEEcCC------------------------
Confidence 5668899999998 465555 47899999764 343321000 000000
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc------ceeEEE-ECCCCcEEEEEECCC------
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------LVNHVY-FSPDGQWVASASFDK------ 382 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~v~-~sp~g~~lasgs~d~------ 382 (473)
.. ..+|.. .+..++ |+|||++|+++..+.
T Consensus 241 --------------------------------~~------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~ 282 (365)
T 1jof_A 241 --------------------------------PG------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282 (365)
T ss_dssp --------------------------------TT------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred --------------------------------CC------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCC
Confidence 00 001111 467899 999999988776432
Q ss_pred cEEEEeCC-CCceEE---EeeCCccCEEEEEEec---CCCEEEEEeCC-CcEEEEECCCC
Q 011978 383 SIKLWNGT-TGKFVA---VFRGHVGPVYQISWSA---DSRLLLSGSKD-STLKVWDIRTQ 434 (473)
Q Consensus 383 ~v~lwd~~-~~~~~~---~~~~h~~~v~~v~~sp---~g~~l~s~s~D-g~i~iwd~~~~ 434 (473)
.|++|++. +++... ....+...+..++|+| ||++|++++.+ +.|++|++...
T Consensus 283 ~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999986 566543 2333444567799999 89999998864 89999998765
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=5.2e-17 Score=154.13 Aligned_cols=282 Identities=12% Similarity=0.035 Sum_probs=173.1
Q ss_pred cEEEEEECCCCCeEEEEeCC---CeEEEEeCCCCceeEEEcCCCCC-EEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 110 AVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d---~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
.+.+++|+|||++|+..+.. ..|.+||+.+++... +..+... ...+.|+|||++|+.++.++.|++||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 36678999999998877543 478888998876533 3333333 233789999999999999999999999887643
Q ss_pred cccCCCcCCcEEE---EEece-----------eccCCCCceEEEe-----eCCCcEEEEECCCCeEEEEecCccccEEEE
Q 011978 186 GNPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (473)
Q Consensus 186 ~~~~~~~~~~v~~---i~~~~-----------~~~~~~~~~~~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 246 (473)
. ....+...... +.+.. ....+++..++.. ..+..|.+||+.+++..... .+...+..+
T Consensus 116 ~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~ 193 (396)
T 3c5m_A 116 V-IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHP 193 (396)
T ss_dssp E-EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEE
T ss_pred E-EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccc
Confidence 2 12222222221 11110 1122333343332 35668999999887765444 456678899
Q ss_pred EecC-CCe-EEEeecC------CeEEEEECCCCceeeeeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHH
Q 011978 247 KWGG-DGV-IYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (473)
Q Consensus 247 ~~~~-~~~-l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
.|++ ++. |+..+.+ ..|.+||+..++........ ...+..+.++++..
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~----------------------- 250 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS----------------------- 250 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-----------------------
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-----------------------
Confidence 9999 663 5544333 46888888765433222211 33566667766532
Q ss_pred HhhhhcccCCCCceEEEecC-----CceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEE------------
Q 011978 318 LERYNKIKGNAPERLVSGSD-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS------------ 379 (473)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs------------ 379 (473)
.++..+. .+.+++||+...... .+..... .. ++|+| ||+++++++
T Consensus 251 -------------~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 251 -------------AMAYVSYFKGQTDRVIYKANPETLENE--EVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp -------------CEEEEEEETTTCCEEEEEECTTTCCEE--EEEECCS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred -------------EEEEEecCCCCccceEEEEECCCCCeE--EeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence 2333322 245999997654321 1111111 23 88999 999988765
Q ss_pred ----CCCcEEEEeCCCCceEEEeeCCcc-----------CEEEEEEecCCCEEEEEeC-CCcEEEE--ECCCCc
Q 011978 380 ----FDKSIKLWNGTTGKFVAVFRGHVG-----------PVYQISWSADSRLLLSGSK-DSTLKVW--DIRTQK 435 (473)
Q Consensus 380 ----~d~~v~lwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~g~~l~s~s~-Dg~i~iw--d~~~~~ 435 (473)
.+..|++||..+++... +..+.. .+..++|+|||+.|+.++. ++...|| |+.+++
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred cccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 24689999998876533 333433 2567899999998887765 4554454 555543
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=6.2e-16 Score=144.01 Aligned_cols=270 Identities=12% Similarity=0.120 Sum_probs=173.9
Q ss_pred ccEEEEEECCCCCeEEEEe---------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC---C--eE
Q 011978 109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL 174 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d---g--~i 174 (473)
..+..+++ ||+++|... .++.|.+||+.++.... + ..+.++.|||||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34666777 898887642 26789999998876433 3 457889999999999987754 3 47
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC---------------------------CcEEEEEC
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD---------------------------GDARIWDV 227 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d---------------------------g~i~iwd~ 227 (473)
.+|++.+++... +..+.. +..+.|+| ++..++.++.+ ..|.+||+
T Consensus 88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 888888776432 222233 78888877 55667766532 57899999
Q ss_pred CCCeEEEEecCccccEEEEEecCCCeEEEeecCC-------eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
.+++.+..+.. . .+..+.|+++|+++++..+. ...+|.+.+++. ..+..+ ..+..+ +|+.
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg------- 226 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDG------- 226 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECS-------
T ss_pred CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCC-------
Confidence 98876344433 3 67889999999555554432 334444334433 333322 222222 3221
Q ss_pred cCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC--------CceEEEEeCCCCCCCeeeecCcccceeE-EEECCC
Q 011978 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--------DFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPD 371 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~v~~-v~~sp~ 371 (473)
..++..+. ...+.+|| .........++...+.. ++|+ |
T Consensus 227 -----------------------------~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s-d 273 (347)
T 2gop_A 227 -----------------------------ERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD-G 273 (347)
T ss_dssp -----------------------------SCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET-T
T ss_pred -----------------------------CEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc-C
Confidence 22333332 24678887 22233334455667776 8999 8
Q ss_pred CcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE-EEEECCCCceeecccccCCC
Q 011978 372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL-KVWDIRTQKLKQDLPGHADE 446 (473)
Q Consensus 372 g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i-~iwd~~~~~~~~~~~~h~~~ 446 (473)
+ ++++++.++.++|| +.+++....+ .+.+.|.+++|+| .++++++.++.. .||.+. ++ ...+..|...
T Consensus 274 g-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 274 K-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp E-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred c-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 8 99999999999999 8766654444 4577899999999 677777777654 777665 44 3446555543
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=5.7e-17 Score=166.59 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=177.9
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCc-----EEEEEeceeccCCCCceEEEeeCC-------
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKW-----ITGISWEPVHLNAPCRRFVSASKD------- 219 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~~~~~~~s~s~d------- 219 (473)
...++.|+|||++++++ |++|++||+.+++... .+.+|... ...+.|+| ++.+++.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sp-----dg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP-----DGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-EECTTTTTTCCSCCCEEEECT-----TSSEEEEEEEEEECSSSC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEE-EEechhhhhhcccccceEECC-----CCCEEEEEECCeeeEEEc
Confidence 35678999999888886 9999999999887542 34444432 22345554 67788887775
Q ss_pred --CcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee-eccCceE------------
Q 011978 220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWV------------ 284 (473)
Q Consensus 220 --g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v------------ 284 (473)
+.+.+||+.++++. .+..|...+...+|+|||..++-..|+.|++|++.+++..+.. .++...+
T Consensus 90 ~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred cceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 56679999998864 4667777899999999995333346899999999887654321 2222212
Q ss_pred -----EEEEecccce-eeeccccCCCc-ccCCHHHHHHHHHhhhhcccCCCCce--E---EEec--CCceEEEEeCCC--
Q 011978 285 -----NSLALSTEYA-LRTGAFDHTGK-QYSSPEEMKKAALERYNKIKGNAPER--L---VSGS--DDFTMFLWEPAV-- 348 (473)
Q Consensus 285 -----~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--l---~~~~--~d~~i~iwd~~~-- 348 (473)
..+.++|+.. +.....+.... .+..+. ........+.. + ..|. ...++++||+..
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~---------~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF---------YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE---------CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEe---------ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 2366777754 22222232211 000000 00000000000 0 0111 123688999876
Q ss_pred -CCC-Ceeeec------CcccceeEEEECCCCcEEEEEEC----CCcEEEEeCCCCc----eE--EEe--eCCccCEE--
Q 011978 349 -SKQ-PKTRMT------GHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGK----FV--AVF--RGHVGPVY-- 406 (473)
Q Consensus 349 -~~~-~~~~~~------~~~~~v~~v~~sp~g~~lasgs~----d~~v~lwd~~~~~----~~--~~~--~~h~~~v~-- 406 (473)
... ....+. +|...+..++|+|||+.++.... +..|++||..+++ +. ..+ .+|.+.|.
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 421 122232 37778999999999997776543 2379999999887 22 112 45665554
Q ss_pred ---EEEEecCCCEEE-EEeC-CC--cEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 407 ---QISWSADSRLLL-SGSK-DS--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 407 ---~v~~sp~g~~l~-s~s~-Dg--~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
.++|+|||+.|+ ..+. +| .|++||+.+++..+ +....-.+..+. .+|++.|+..+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d~~~i~f~~ 381 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALTSDYLYYIS 381 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EECSSEEEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEeCCEEEEEE
Confidence 789999999877 6664 44 58889988766544 333344565543 35566665443
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.9e-15 Score=135.39 Aligned_cols=234 Identities=14% Similarity=0.248 Sum_probs=165.3
Q ss_pred CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec------CccccEEEEEe-cCCCeEEEeec--CC
Q 011978 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTCVKW-GGDGVIYTGSQ--DC 261 (473)
Q Consensus 191 ~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~-~~~~~l~s~~~--d~ 261 (473)
++-....++++.+ ++..+++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++.+.. ++
T Consensus 27 g~~~~p~~v~~~~-----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECT-----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccCCCceEEECC-----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 3445567777654 44567777888999999987 55555443 34457889999 57777666553 89
Q ss_pred eEEEEECCCCceeeeeec-cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 262 TIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
.|++|| .+++.+..+.. +......+++.++ ...+++...++.
T Consensus 101 ~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~ 143 (286)
T 1q7f_A 101 QIQIYN-QYGQFVRKFGATILQHPRGVTVDNK------------------------------------GRIIVVECKVMR 143 (286)
T ss_dssp EEEEEC-TTSCEEEEECTTTCSCEEEEEECTT------------------------------------SCEEEEETTTTE
T ss_pred EEEEEC-CCCcEEEEecCccCCCceEEEEeCC------------------------------------CCEEEEECCCCE
Confidence 999999 66776665532 2234555555443 224566667889
Q ss_pred EEEEeCCCCCCCeeeec--CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC--ccCEEEEEEecCCCE
Q 011978 341 MFLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQISWSADSRL 416 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~g~~ 416 (473)
+.+|+... .....+. ++...+..++++|+|+++++.+.++.|++||. +++.+..+..+ ...+..++++|+|++
T Consensus 144 i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 144 VIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp EEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred EEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE
Confidence 99998542 2222221 34456899999999998888888999999997 45666666433 467899999999998
Q ss_pred EEEEeCCC-cEEEEECCCCceeecccccC--CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 417 LLSGSKDS-TLKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 417 l~s~s~Dg-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+++...++ .|++||.. ++.+..+..+. ..+.+++++|+|+.+++ +.|++|++|.
T Consensus 221 ~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred EEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 88888776 99999964 45555554433 34789999999987777 6799999995
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=4.3e-16 Score=144.24 Aligned_cols=265 Identities=11% Similarity=0.090 Sum_probs=179.3
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
.|.+++|+|++..++..+.++.++.| .......+..+...+.+++|+|+|+.++++..++.|.+||..+++.... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-~ 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-F 82 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-E
T ss_pred ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-e
Confidence 46778899988888777888999999 3345555666777789999999999777888899999999987764322 2
Q ss_pred CCcCCcEEEEEeceeccCCCCceEEEeeCC----CcEEEEECCCCeEEEEec--CccccEEEEEecCCCeEEEeecC---
Q 011978 190 SGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD--- 260 (473)
Q Consensus 190 ~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~s~~~d--- 260 (473)
..+...+.++.+.| ++..+++...+ +.|.+||..++.....+. .+...+.++.+++++.++.++..
T Consensus 83 ~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 83 VSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp ECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred eCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 23456788888765 34456655555 689999988776543332 34456888999998876655442
Q ss_pred ----CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 261 ----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 261 ----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
+.|..+|..+++...
T Consensus 158 ~~~~~~l~~~~~~~~~~~~------------------------------------------------------------- 176 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTP------------------------------------------------------------- 176 (333)
T ss_dssp TBCCEEEEEECTTSCCEEE-------------------------------------------------------------
T ss_pred cCCCceEEEEeCCCCEEEE-------------------------------------------------------------
Confidence 233333322211100
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEE-EECCCcEEEEeCCC-CceEEE--------eeCCccCEE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT-GKFVAV--------FRGHVGPVY 406 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las-gs~d~~v~lwd~~~-~~~~~~--------~~~h~~~v~ 406 (473)
+..+...+..++|+|+|++|+. .+.++.|.+||..+ +..+.. +.++ ..+.
T Consensus 177 -------------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 177 -------------------IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp -------------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred -------------------eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 0001123567899999986654 45578999999863 333221 1222 3678
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC------CCEEEEEEeeCCCEEEEEeCC
Q 011978 407 QISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~------~~i~~l~~s~d~~~l~s~~~D 465 (473)
.++++++|+++++...++.|.+||.. ++....+..+. ..+.+++|+||++.|..++.+
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 89999999988888888999999984 55444443332 257899999998777655554
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.74 E-value=6.6e-14 Score=127.10 Aligned_cols=276 Identities=11% Similarity=0.082 Sum_probs=187.3
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
..+...+.+++++++|...++...++.|.+||.. +... .....+...+.+++++++|..+++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455689999999999987776668999999988 4322 2223345679999999999877777778899999986 33
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE-EecCccccEEEEEecCCCeEEEee-cCC
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDC 261 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~~-~d~ 261 (473)
............+.++.+.+ ++..+++...++.|..||. +++... ....+...+.++++++++.++.+. .++
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp EEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred EEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 22222222344567776654 3456666666788999998 444332 233344567888888887665544 457
Q ss_pred eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceE
Q 011978 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 341 (473)
.|..||. +++... +
T Consensus 163 ~i~~~~~-~g~~~~-~---------------------------------------------------------------- 176 (299)
T 2z2n_A 163 AIGRITE-SGDITE-F---------------------------------------------------------------- 176 (299)
T ss_dssp EEEEECT-TCCEEE-E----------------------------------------------------------------
T ss_pred EEEEEcC-CCcEEE-e----------------------------------------------------------------
Confidence 7888876 443211 0
Q ss_pred EEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEE
Q 011978 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
. .......+..++++++|++.++...++.|.+||. +++.... ...+...+.+++++++|++.++.
T Consensus 177 ---~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 177 ---K----------IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ---E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ---e----------CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 0 0011123667899999997777767789999998 6664432 33355678999999999977776
Q ss_pred eCCCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 421 SKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
..++.|..||.. ++.. ..+..+...+.++.+ ++|+..++.+.++.+++
T Consensus 243 ~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 243 WGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp TTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred cCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 678899999984 4432 224455567899999 89887777665555544
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=5.8e-16 Score=157.36 Aligned_cols=282 Identities=12% Similarity=0.044 Sum_probs=180.3
Q ss_pred EcCCCCCEEEEEECCCCCeEEEE--ecCCeEEEeeCCCCccccccCCCcCCcEE---------EEEeceeccCCCCce-E
Q 011978 146 CTGHKNWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWIT---------GISWEPVHLNAPCRR-F 213 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~dg~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---------~i~~~~~~~~~~~~~-~ 213 (473)
+.+|...+..++|++++-.+++. +.++...||....+.... .+..|...+. ...|.. ++++.+ +
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~---SPDg~~~l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE-SALPAPWNVRNRVFEYSGFPWAGVP---RPAGGPLL 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE-ESSCTTCCBCCCGGGTCCCCEEEEC---CSSSSCEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc-eeCCCCccccccccccCCccceeee---ecCCCeEE
Confidence 44678889999999876556665 457889999854333222 2334443333 333330 135566 5
Q ss_pred EEeeC-CCcEEEEECC--C-CeEEEEecC-----ccccEEEEEecCCC-eEEEeecC----------CeEEEEECCC---
Q 011978 214 VSASK-DGDARIWDVS--L-RKCVICLSG-----HTLAVTCVKWGGDG-VIYTGSQD----------CTIKVWETTQ--- 270 (473)
Q Consensus 214 ~s~s~-dg~i~iwd~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~-~l~s~~~d----------~~i~~wd~~~--- 270 (473)
+..+. +..|.+|++. . +. ...+.. |...+.+++|++|| .|+.++.| ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 54443 5566666665 2 33 344444 66788899999998 47666666 5899999987
Q ss_pred ---Cceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC--------
Q 011978 271 ---GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-------- 338 (473)
Q Consensus 271 ---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------- 338 (473)
++. ..+. .+...+..++++|+. ..|+..+.+
T Consensus 174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG------------------------------------~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 174 ADRSAV-RELSDDAHRFVTGPRLSPDG------------------------------------RQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TCGGGS-EESSCSCSSEECCCEECTTS------------------------------------SEEEEEEECTTCCTTTC
T ss_pred ccCCce-eEEEecCCCcccCceECCCC------------------------------------CEEEEEECCCCCCCCCC
Confidence 543 3444 444555566666653 234433322
Q ss_pred ceEEEEeCCCCC---CCeeeecCcccceeEEEECCCCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccC--------E
Q 011978 339 FTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGP--------V 405 (473)
Q Consensus 339 ~~i~iwd~~~~~---~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~--------v 405 (473)
..|++||+.... .......++...+..++|+|||+++++++.++ .|.+||..+++.......+... +
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~ 296 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence 479999986322 22333344567889999999999888888888 5666777677765554444332 5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEE--ECCCCceeecccccCCCEEEE-EEeeCCCEEEEEeCCCcEEec
Q 011978 406 YQISWSADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAV-DWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 406 ~~v~~sp~g~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s~~~D~~i~~w 471 (473)
..++|+|+++++++++. +.++|| |+.+++ ...+..|...+..+ +++++.-.+++++.+....+|
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 67899999999999998 999999 555555 56777777777766 444333344555666555555
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=4.7e-15 Score=137.99 Aligned_cols=253 Identities=11% Similarity=0.124 Sum_probs=166.7
Q ss_pred CCEEEEEECCCCCeEEEEe---------cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC--
Q 011978 151 NWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-- 219 (473)
Q Consensus 151 ~~v~~l~~s~dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-- 219 (473)
..+..+.+ ||++++... .++.|.+||+.+++... + ..+..+.|+| ++.+++..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l----~~~~~~~~Sp-----Dg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--I----ENATMPRISP-----DGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--E----ESCEEEEECT-----TSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--c----ccCCCeEECC-----CCCEEEEEEeccC
Confidence 34667777 888887642 25679999998876432 2 3466677776 56677776653
Q ss_pred -C--cEEEEECCCCeEEEEecCccccEEEEEecCCCe-EEEeec---------------------------CCeEEEEEC
Q 011978 220 -G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---------------------------DCTIKVWET 268 (473)
Q Consensus 220 -g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---------------------------d~~i~~wd~ 268 (473)
+ .|.+||+.+++.......+ . +.++.|++|+. |+.++. ...|.+||+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 2 4888898887765544433 3 89999999984 555543 257889999
Q ss_pred CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC---------Cc
Q 011978 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---------DF 339 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------d~ 339 (473)
.+++.+..+.. . .+..+.++++. + ++++.. ..
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg-~------------------------------------~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDK-I------------------------------------VVNVPHREIIPQYFKFW 200 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTE-E------------------------------------EEEEECCCSSCCSSCCE
T ss_pred CCCeEEeeecC-C-CcccccCCCCe-E------------------------------------EEEEecccccccccccc
Confidence 88876444443 2 45556666553 2 222222 12
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC--------CcEEEEeCCCCceEEEeeCCccCEEE-EEE
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--------KSIKLWNGTTGKFVAVFRGHVGPVYQ-ISW 410 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d--------~~v~lwd~~~~~~~~~~~~h~~~v~~-v~~ 410 (473)
.+.++| ... ...+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++......+|...+.. +.|
T Consensus 201 ~l~~~d---~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~ 271 (347)
T 2gop_A 201 DIYIWE---DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK 271 (347)
T ss_dssp EEEEEE---TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE
T ss_pred cEEEeC---CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE
Confidence 344444 221 2223333 344443 9999999888754 3688888 66665555666777886 999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE-Eecc
Q 011978 411 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL-KLWM 472 (473)
Q Consensus 411 sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i-~~w~ 472 (473)
+ |+ ++++++.|+.++|| +.+++....+ .+...|.+++|+| ..+++++.++.. .||.
T Consensus 272 s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 272 D-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp T-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred c-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 9 88 99999999999999 8765554333 4467899999999 677777777654 6663
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=5.7e-15 Score=134.21 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=159.9
Q ss_pred cCCcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
..+.....+++|+|+|+ .++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+||..+++
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 34555678899999998 6778888999999999887 44555677789999999999987777677899999987665
Q ss_pred cccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEee-cCCe
Q 011978 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCT 262 (473)
Q Consensus 184 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~ 262 (473)
.... .... .+ .....+..++++++|.++.+. .+++
T Consensus 102 ~~~~--------------------------~~~~-~~-----------------~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 102 WESI--------------------------ADSF-EG-----------------KKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp EEEE--------------------------ECEE-TT-----------------EECCCCCCEEECTTSCEEEEECSHHH
T ss_pred EEEE--------------------------eecc-CC-----------------CCCCCCCCEEECCCCCEEEECCcccc
Confidence 2110 0000 00 001123446667776544321 1010
Q ss_pred EEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEE
Q 011978 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (473)
Q Consensus 263 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 342 (473)
...++.... ......+.+.
T Consensus 138 ~~~~~~~~~-------------------------------------------------------------~~~~~~~~l~ 156 (296)
T 3e5z_A 138 DKPEEGYGG-------------------------------------------------------------EMELPGRWVF 156 (296)
T ss_dssp HCGGGSSCC-------------------------------------------------------------CCCSSSCEEE
T ss_pred ccccccccc-------------------------------------------------------------cccCCCcEEE
Confidence 000000000 0000011122
Q ss_pred EEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC-CCce---EEEeeCCccCEEEEEEecCCCEEE
Q 011978 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKF---VAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~~~~---~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
.++.. ........+....+.++|+|+|+.+++.+.++.|++||+. +++. ...+..+.+.+.+++++++|++++
T Consensus 157 ~~~~~---g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 233 (296)
T 3e5z_A 157 RLAPD---GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA 233 (296)
T ss_dssp EECTT---SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred EECCC---CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence 22211 0111122233456789999999998777778999999986 5554 334434555677899999999776
Q ss_pred EEeCCCcEEEEECCCCceeecccccCCCEEEEEE-eeCCCEEEEEeCCCcEEe
Q 011978 419 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~-s~d~~~l~s~~~D~~i~~ 470 (473)
+. ++.|.+||.. ++....+..+.. +.+++| +||++.|..++.++..++
T Consensus 234 ~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 234 SA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred Ec--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 66 7889999987 666666666666 889999 589999998888876554
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=6.5e-15 Score=137.58 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=163.1
Q ss_pred EEEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEEcCC------CCCEEEEEECCCCCeEEEEec--CCeE
Q 011978 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKHLVSGSK--AGEL 174 (473)
Q Consensus 113 ~~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~s~~~--dg~i 174 (473)
.++|+|||+++++++ .+++|.+||..+.+.+..+... ......++|+|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 799999999998886 3678999999988776655422 234567999999999998874 5899
Q ss_pred EEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-CeEEEEe------cCccccEEEEE
Q 011978 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICL------SGHTLAVTCVK 247 (473)
Q Consensus 175 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-~~~~~~~------~~h~~~v~~~~ 247 (473)
.+||+.+++.....+.. .. ...+.+.|. ....+++.+.||.+.+|+... ++..... ..+...+ .+.
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~ 206 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA 206 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TT-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred EEEECCCCcEEEEEecC-CC-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence 99999988754320111 11 111223332 225788899999999999865 4443111 1111111 111
Q ss_pred ecCCC-eEEEeecCCeEEEEECCCCcee--eeeeccC------ceEE----EEEecccceeeeccccCCCcccCCHHHHH
Q 011978 248 WGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHG------HWVN----SLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (473)
Q Consensus 248 ~~~~~-~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~------~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+.+++ .++..+.++.+.++|+..+... ..+.... .+.. .++++++
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d---------------------- 264 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA---------------------- 264 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT----------------------
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC----------------------
Confidence 12333 4555567889999998654321 1111000 0000 0111111
Q ss_pred HHHHhhhhcccCCCCceEEE-ec----------CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCc
Q 011978 315 KAALERYNKIKGNAPERLVS-GS----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~-~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~ 383 (473)
..+++. .. .+.++.+||....+. ...+..+. +.+++|+|||++|++++. ++
T Consensus 265 --------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 265 --------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp --------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred --------------CCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence 122322 22 135899999866543 33444444 899999999999998887 99
Q ss_pred EEEEeCCCC--ceEEEeeCCccCEEEEEEecCCC
Q 011978 384 IKLWNGTTG--KFVAVFRGHVGPVYQISWSADSR 415 (473)
Q Consensus 384 v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~g~ 415 (473)
|.+||..++ +.+..+..+......++++|+|+
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999 98888766667788999999986
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=9.1e-15 Score=149.54 Aligned_cols=247 Identities=16% Similarity=0.169 Sum_probs=163.0
Q ss_pred cCCcccEEEEEECCCCCeEEEEeCCC-----eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCe------
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------ 173 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~------ 173 (473)
.+|...+..++|||||++||.++.++ .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 35666788999999999998775433 8999999998765432222 12567999999999999888765
Q ss_pred ----------EEEeeCCCCccccc---cCCCcCCcEEEEEeceeccCCCCceEEEeeC-----CCcEEEEECCC------
Q 011978 174 ----------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------ 229 (473)
Q Consensus 174 ----------i~iwd~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~-----dg~i~iwd~~~------ 229 (473)
|++|++.++..... ....|...+..+.|+| ++++++..+. +..+.+||+.+
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 99999988763211 1223455677777776 5566766554 56899999876
Q ss_pred Ce-EEEEecCccccEEEEEecCCC-eEEEeec-C---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCC
Q 011978 230 RK-CVICLSGHTLAVTCVKWGGDG-VIYTGSQ-D---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (473)
Q Consensus 230 ~~-~~~~~~~h~~~v~~~~~~~~~-~l~s~~~-d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (473)
+. ....+..+...+.. .|+++| .++..+. + +.|.+||+.++...
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~----------------------------- 324 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES----------------------------- 324 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------------------
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------------------
Confidence 42 23444445444443 244443 3333222 2 24566665443100
Q ss_pred CcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc--cceeEEEECCCCcEEEEEECC
Q 011978 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~lasgs~d 381 (473)
....+..|. ..+..++|++++.++++...|
T Consensus 325 ------------------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 325 ------------------------------------------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp ------------------------------------------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred ------------------------------------------------cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 001111121 246678888888889999888
Q ss_pred Cc--EEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEE-e---CCCcEEEEECCCCc
Q 011978 382 KS--IKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSG-S---KDSTLKVWDIRTQK 435 (473)
Q Consensus 382 ~~--v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s---~Dg~i~iwd~~~~~ 435 (473)
+. |++||+.+|+.+..+..+.+.+..++++|++..++.. + ..++|+.||+.+++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 84 5667877788778888788889999999998765533 2 35789999998766
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=3.8e-15 Score=151.89 Aligned_cols=273 Identities=15% Similarity=0.053 Sum_probs=172.9
Q ss_pred CCCCeEEEEeCCC---eEEEE--eCCCCceeEEE------cCCCCCEEEEEECCCCCeEEE-----EecCCeEEEeeCCC
Q 011978 118 PDGRQLASGSGDT---TVRLW--DLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQT 181 (473)
Q Consensus 118 p~~~~lat~s~d~---~i~iw--d~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s-----~~~dg~i~iwd~~~ 181 (473)
|+|++++....++ .-.+| +..++.....+ .+|...+.+++|||||++|+. |+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788877665432 33444 44444332222 245557899999999999983 44456899999999
Q ss_pred Cccc-cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc-------------EEEEECCCCe----EEEEecCccccE
Q 011978 182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV 243 (473)
Q Consensus 182 ~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v 243 (473)
++.. ...+.... ...+.|+| ++..|+.++.|.. |++|++.++. .+.....|...+
T Consensus 157 g~~~~~~~~~~~~--~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~ 229 (695)
T 2bkl_A 157 GEWSKVDVIEGGK--YATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF 229 (695)
T ss_dssp CCBCSSCCBSCCT--TCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred CCCcCCcccCccc--ccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence 8754 21121111 14567766 6678888888776 9999998765 444445566778
Q ss_pred EEEEecCCCe-EEEeecCC----eEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 244 TCVKWGGDGV-IYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 244 ~~~~~~~~~~-l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
.++.|++||. |+.++.++ .|.+|+..+++. ..+..+...+.....+.
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~--------------------------- 281 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWK--------------------------- 281 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEET---------------------------
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEecC---------------------------
Confidence 8999999984 55555444 677776655543 33333222222222111
Q ss_pred hhhhcccCCCCceEEEec---CCceEEEEeCCCCCC--CeeeecCc-ccceeEEEECCCCcEEEEEECCCcEEEEeCC-C
Q 011978 319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQ--PKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T 391 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~-~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~-~ 391 (473)
...++.+. .++.|..||+..... .......+ ...+..++++ ++.++++...|+..+||... +
T Consensus 282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 11233332 357899999765432 12233333 4457888888 78889999999988888654 4
Q ss_pred CceEEEeeCC-ccCEEEEEEecCCCEEEEE----eCCCcEEEEECCCCce
Q 011978 392 GKFVAVFRGH-VGPVYQISWSADSRLLLSG----SKDSTLKVWDIRTQKL 436 (473)
Q Consensus 392 ~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~----s~Dg~i~iwd~~~~~~ 436 (473)
++....+..+ .+.+..++++|++..++.. ...++|++||+.+++.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6656666655 6678889999999876632 2357899999987653
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=2.3e-14 Score=146.63 Aligned_cols=268 Identities=10% Similarity=0.030 Sum_probs=171.8
Q ss_pred CCCCeEEEEeCC-C----eEEEEeCCCCceeEEE------cCCCCCEEEEEECCCCCeEEEEecCC-----eEEEeeCCC
Q 011978 118 PDGRQLASGSGD-T----TVRLWDLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT 181 (473)
Q Consensus 118 p~~~~lat~s~d-~----~i~iwd~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s~~~dg-----~i~iwd~~~ 181 (473)
|+|++++....+ + .+.+.+..++.....+ .+|...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 778877655422 1 3344444443332211 23444688999999999998776543 899999999
Q ss_pred CccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc----------------EEEEECCCCe----EEEEecCccc
Q 011978 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL 241 (473)
Q Consensus 182 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~----------------i~iwd~~~~~----~~~~~~~h~~ 241 (473)
++........ ..+..+.|+| ++..|+.++.++. |++|++.++. .+.....|..
T Consensus 161 g~~~~~~~~~--~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 161 AKELPDVLER--VKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp TEEEEEEEEE--ECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CCCCcccccC--cccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 8754322211 1244567766 6678888877765 9999998765 3333334566
Q ss_pred cEEEEEecCCCe-EEEeec-----CCeEEEEECCC------Cc-eeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 242 AVTCVKWGGDGV-IYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 242 ~v~~~~~~~~~~-l~s~~~-----d~~i~~wd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
.+..+.|++||. |+.++. +..|++||+.+ +. ...
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------------------------------- 280 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV--------------------------------- 280 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE---------------------------------
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE---------------------------------
Confidence 678899999984 444433 56777887654 21 011
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECC----CcE
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSI 384 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d----~~v 384 (473)
.+..+...+.. .|+|+|+.|+..+.+ +.|
T Consensus 281 ----------------------------------------------~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 281 ----------------------------------------------KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp ----------------------------------------------EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred ----------------------------------------------EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence 11111122222 477888887776653 359
Q ss_pred EEEeCCCCc--eEEEeeCCcc--CEEEEEEecCCCEEEEEeCCCc--EEEEECCCCceeecccccCCCEEEEEEeeCCCE
Q 011978 385 KLWNGTTGK--FVAVFRGHVG--PVYQISWSADSRLLLSGSKDST--LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 458 (473)
Q Consensus 385 ~lwd~~~~~--~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~Dg~--i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~ 458 (473)
.+||+.++. ....+..|.. .+..++|++++.++++...|+. |++||+.+++....+..+...+..++++|+++.
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~ 393 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTE 393 (710)
T ss_dssp EEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSE
T ss_pred EEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCE
Confidence 999998764 2334444543 6888999988888888888884 666787677766677777778889999999987
Q ss_pred EEEE-e---CCCcEEecc
Q 011978 459 VASG-G---KDRVLKLWM 472 (473)
Q Consensus 459 l~s~-~---~D~~i~~w~ 472 (473)
++.. + ..+++.+|+
T Consensus 394 l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 394 IFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEECSSCCCEEEEEE
T ss_pred EEEEEeCCCCCCEEEEEE
Confidence 6633 2 335676664
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=3.3e-13 Score=124.69 Aligned_cols=241 Identities=11% Similarity=0.078 Sum_probs=159.5
Q ss_pred ccCCcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeC
Q 011978 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDP 179 (473)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~ 179 (473)
+.++...+.+++|+|+|+.++++..++.|.+||..+++.......+...+.+++|+|+|+++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 34566678899999999988888889999999998876544333456789999999999877777666 68999998
Q ss_pred CCCccccccC-CCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCccccEEEEEecCCC
Q 011978 180 QTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (473)
Q Consensus 180 ~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (473)
.++....... ..+...+..+.+.| ++..+++... .+.|..+|..+++.... ..+...+..++|++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDE 193 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTS
T ss_pred CCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCC
Confidence 8765431111 12345677777765 3445554432 24555566555443322 2233457789999987
Q ss_pred e-EE-EeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 253 V-IY-TGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 253 ~-l~-s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
. ++ +.+.++.|.+||..+ +.....+.. .
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~------------------------------------------- 224 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGA------T------------------------------------------- 224 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEE------E-------------------------------------------
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccc------e-------------------------------------------
Confidence 3 54 445678999999753 322211100 0
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCcc------
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG------ 403 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~------ 403 (473)
+ ... ..++ ..+..++++++|++.++...++.|.+||. +++.+..+..+..
T Consensus 225 --~----------~~~----------~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~ 280 (333)
T 2dg1_A 225 --I----------PYY----------FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 280 (333)
T ss_dssp --E----------EEE----------CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred --E----------EEe----------cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccccc
Confidence 0 000 0011 23567899999998888888899999998 5666666654432
Q ss_pred CEEEEEEecCCCEEEEEeCC
Q 011978 404 PVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~D 423 (473)
.+.+++|+||++.|+.++.+
T Consensus 281 ~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 281 RSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp BCCEEEECTTSCEEEEEEEC
T ss_pred CcceEEECCCCCEEEEEeCc
Confidence 68999999998777665554
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=8.7e-13 Score=129.56 Aligned_cols=315 Identities=14% Similarity=0.051 Sum_probs=198.2
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCC--CCccccccCCCcCCc
Q 011978 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKKW 195 (473)
Q Consensus 118 p~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~ 195 (473)
|.+..+++...+++|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.......+. .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--C
Confidence 44455677778999999999998877766533 357799999999999999999999999995 655443322221 2
Q ss_pred EEEEEeceeccCCCCceEEE-eeCCCcEEEEECCCCeEEEEecC----------ccc-cEEEEEecCCC--eEEEeecCC
Q 011978 196 ITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRKCVICLSG----------HTL-AVTCVKWGGDG--VIYTGSQDC 261 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s-~s~dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~--~l~s~~~d~ 261 (473)
...+.+++... ++++++++ .-.++++.++|..+.+.+..+.- |.. .+..+..++++ .++....+|
T Consensus 242 P~~ia~s~~~~-pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 242 ARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CceeEEccccC-CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 34566652000 14555554 45569999999999888776542 112 46667766654 355666779
Q ss_pred eEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 262 TIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
.|.++|..+.+...... ........+.++++ ++ ..+++...++.
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd-----------gr------------------------~~~va~~~sn~ 365 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGS-----------HR------------------------YFITAANARNK 365 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTT-----------SC------------------------EEEEEEGGGTE
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCC-----------CC------------------------EEEEEeCCCCe
Confidence 99999987654222111 11111222233322 11 13455667888
Q ss_pred EEEEeCCCCCCCeeeec----CcccceeEEEECCCC-cEEEEEE-CCCcEEEEeCCC-------CceEEEeeCCccCEEE
Q 011978 341 MFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDG-QWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGPVYQ 407 (473)
Q Consensus 341 i~iwd~~~~~~~~~~~~----~~~~~v~~v~~sp~g-~~lasgs-~d~~v~lwd~~~-------~~~~~~~~~h~~~v~~ 407 (473)
|.++|....+....... .|...-.. -++|++ .+.+++. .++.|.++|..+ .+.+..+......-..
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~ 444 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF 444 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred EEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEE
Confidence 99999875543222222 13221111 268874 4445554 468999999887 5677777754333344
Q ss_pred EEEecCCCEEEEEeC-------CCcEEEEECCCC-----cee-ecc--------cccCCCEEEEEEeeCCCEEEEEe---
Q 011978 408 ISWSADSRLLLSGSK-------DSTLKVWDIRTQ-----KLK-QDL--------PGHADEVFAVDWSPDGEKVASGG--- 463 (473)
Q Consensus 408 v~~sp~g~~l~s~s~-------Dg~i~iwd~~~~-----~~~-~~~--------~~h~~~i~~l~~s~d~~~l~s~~--- 463 (473)
+..+|++++|.+... .++|.++|+.+. ... ..+ ......+..+.|+|||+++..+.
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 778999999888663 358999999876 211 222 11235788999999999876552
Q ss_pred --CCCcEEecc
Q 011978 464 --KDRVLKLWM 472 (473)
Q Consensus 464 --~D~~i~~w~ 472 (473)
.++.|.+++
T Consensus 525 ~~~~~~i~v~D 535 (567)
T 1qks_A 525 KDQESALVVVD 535 (567)
T ss_dssp TTSCCEEEEEE
T ss_pred CCCCCcEEEEE
Confidence 257777653
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=1.4e-13 Score=126.89 Aligned_cols=254 Identities=11% Similarity=0.010 Sum_probs=171.0
Q ss_pred CCCeEEEEeCCCCceeEEEc------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEe
Q 011978 128 GDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW 201 (473)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 201 (473)
.+++|.+||.++++....+. ........+.+. +++..++...++.|.+||..+++..... . .......+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEE
Confidence 48899999999876433210 112345777774 3445555566799999999998865433 2 2345667776
Q ss_pred ceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEecCCCeEEEee--cCCeEEEEECCCCcee
Q 011978 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS--QDCTIKVWETTQGKLI 274 (473)
Q Consensus 202 ~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~ 274 (473)
.+ ++..+++...++.|.+||..+++....+.... .....+++ .++.++.+. .++.|.++|..+++.+
T Consensus 92 ~~-----~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 92 LS-----DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EE-----TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred eC-----CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 55 33445555478999999999998776554222 13345555 355655554 4889999998887655
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
..+...
T Consensus 166 ~~i~~g-------------------------------------------------------------------------- 171 (328)
T 3dsm_A 166 DELTIG-------------------------------------------------------------------------- 171 (328)
T ss_dssp EEEECS--------------------------------------------------------------------------
T ss_pred EEEEcC--------------------------------------------------------------------------
Confidence 432100
Q ss_pred eecCcccceeEEEECCCCcEEEEEECC----------CcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEeCC
Q 011978 355 RMTGHQQLVNHVYFSPDGQWVASASFD----------KSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 355 ~~~~~~~~v~~v~~sp~g~~lasgs~d----------~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s~D 423 (473)
.....++++|+|++++++..+ +.|.++|..+++....+... ......++|+||+++|+++..
T Consensus 172 ------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 172 ------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp ------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred ------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence 012346788999877776554 78999999999887766532 236789999999998887754
Q ss_pred CcEEEEECCCCceee--cccccCCCEEEEEEee-CCCEEEEE----eCCCcEEecc
Q 011978 424 STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSP-DGEKVASG----GKDRVLKLWM 472 (473)
Q Consensus 424 g~i~iwd~~~~~~~~--~~~~h~~~i~~l~~s~-d~~~l~s~----~~D~~i~~w~ 472 (473)
.|.+||..+++... .+..+.....+++++| +++.+++. ..++.|.+|+
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999998877532 1222245688999999 55555665 5678898885
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=3.2e-12 Score=115.94 Aligned_cols=273 Identities=12% Similarity=0.092 Sum_probs=182.6
Q ss_pred CcccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
....+.+++++++|+..++...++.|.+||.. ++.. .....+...+.++++.++|...++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 44578899999999988877778999999987 4322 2233344678999999999877776668899999987 5543
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE-EEecCccccEEEEEecCCCeEEEee-cCCeE
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTI 263 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~i 263 (473)
..........+.++.+.+ ++..+++...++.|..+|.. ++.. ..+......+.++++++++.++.+. .++.|
T Consensus 96 ~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 222332335567776654 34556666667889999887 5443 2233344567888888877655554 35677
Q ss_pred EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 343 (473)
..+|. +++... +
T Consensus 170 ~~~~~-~g~~~~-~------------------------------------------------------------------ 181 (300)
T 2qc5_A 170 GRITN-TGKLEE-Y------------------------------------------------------------------ 181 (300)
T ss_dssp EEECT-TCCEEE-E------------------------------------------------------------------
T ss_pred EEECC-CCcEEE-e------------------------------------------------------------------
Confidence 77775 332211 0
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeC
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
. ...+...+..++++++|++.++....+.|.+||. +++.... +..+...+.+++++++|++.++...
T Consensus 182 -~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 182 -P----------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp -E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred -e----------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 0 0011134678899999987777666778999998 5554432 3334567899999999997777666
Q ss_pred CCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 423 DSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
++.|..||.. ++.. ..+......+.++.++++|+..++.. . .|..
T Consensus 250 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~ 295 (300)
T 2qc5_A 250 ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGK 295 (300)
T ss_dssp TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEE
T ss_pred CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEE
Confidence 7899999984 4332 23443445678899999998666655 4 4443
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=2.5e-13 Score=121.50 Aligned_cols=233 Identities=12% Similarity=0.030 Sum_probs=158.2
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEE
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 197 (473)
.++.|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|+.|+ +.++.|+.||. +|+.+.....+....+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46788999999999999999999988887765 4788999999999888 45788999999 77755433222223455
Q ss_pred EEEeceeccCCCCceEEEeeC-CCcEEEEECCCCeEEEEec------CccccEEEEEecCCC-eEEEeecCCeEEEEECC
Q 011978 198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (473)
Q Consensus 198 ~i~~~~~~~~~~~~~~~s~s~-dg~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~ 269 (473)
++.+. .++..+++.+. ++.+..+|. .++.+..+. ++......+++.++| ++++...++.|..||..
T Consensus 81 ~~~~~-----~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 81 TARIL-----PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEC-----TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccEEC-----CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 55443 35667777666 666776775 566554442 111223334455565 45666677888888866
Q ss_pred CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
|+.+.++...
T Consensus 155 -G~~~w~~~~~--------------------------------------------------------------------- 164 (276)
T 3no2_A 155 -GQLLNSVKLS--------------------------------------------------------------------- 164 (276)
T ss_dssp -SCEEEEEECS---------------------------------------------------------------------
T ss_pred -CCEEEEEECC---------------------------------------------------------------------
Confidence 6655443211
Q ss_pred CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc------cCEEEEEEecCCCEEEEEeCC
Q 011978 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV------GPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 350 ~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~------~~v~~v~~sp~g~~l~s~s~D 423 (473)
..+.++.+.++|+++++++.++.|..+|..+|+.+..+..+. ..+..++..++|+.+++.+..
T Consensus 165 -----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 165 -----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp -----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred -----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 123346678899999998888899999999999988886432 237888899999988887421
Q ss_pred --------CcEEEEEC-CCCceeeccc
Q 011978 424 --------STLKVWDI-RTQKLKQDLP 441 (473)
Q Consensus 424 --------g~i~iwd~-~~~~~~~~~~ 441 (473)
+..+++.+ ..++.+-++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred ccccccccCCceEEEECCCCCEEEEec
Confidence 23355555 3455544443
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=3e-13 Score=120.91 Aligned_cols=240 Identities=7% Similarity=-0.027 Sum_probs=159.1
Q ss_pred cEEEEEECCCCCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 110 ~V~~~~~sp~~~~la-t~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
...+++++++|+.++ +.+.++.|.+||..+.........+...+.+++++++|+.+++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~- 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL- 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-
Confidence 678899999999777 446789999999766543221123335678899999998555555 88999999876543221
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEEE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWE 267 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~wd 267 (473)
.......+.++.+.+ ++..+++...++.|.+|+..+.............+.++++++++.++.+ ..++.|.+||
T Consensus 103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 112224567777665 3456666677889999986655443322233345677888887765544 4567888887
Q ss_pred CCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
...+.....
T Consensus 178 ~~~~~~~~~----------------------------------------------------------------------- 186 (270)
T 1rwi_B 178 AESNNQVVL----------------------------------------------------------------------- 186 (270)
T ss_dssp TTTCCEEEC-----------------------------------------------------------------------
T ss_pred cCCCceEee-----------------------------------------------------------------------
Confidence 654321100
Q ss_pred CCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
...+...+..++++++|.++++...++.|.+||............+...+.+++++|+|+++++.+.++.|+
T Consensus 187 --------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 187 --------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp --------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred --------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 000113467899999998888777788999999876544333233446789999999999888888899999
Q ss_pred EEECCCCc
Q 011978 428 VWDIRTQK 435 (473)
Q Consensus 428 iwd~~~~~ 435 (473)
++++...+
T Consensus 259 ~~~~~~~~ 266 (270)
T 1rwi_B 259 KLTSLEHH 266 (270)
T ss_dssp EECCCGGG
T ss_pred EEcCCCcc
Confidence 99987644
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=1.1e-14 Score=148.52 Aligned_cols=245 Identities=11% Similarity=-0.024 Sum_probs=157.1
Q ss_pred cCCcccEEEEEECCCCCeEEE-----EeCCCeEEEEeCCCCceeEEEcCCCCCE--EEEEECCCCCeEEEEecCCe----
Q 011978 105 AGHTEAVLSVAFSPDGRQLAS-----GSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGE---- 173 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat-----~s~d~~i~iwd~~~~~~~~~~~~~~~~v--~~l~~s~dg~~l~s~~~dg~---- 173 (473)
.+|...+..++|||||++||. |+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 467778999999999999984 3445789999999887541 1121222 67899999999999988766
Q ss_pred ---------EEEeeCCCCccc---cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC----cEEEEECCCCeEEEEec
Q 011978 174 ---------LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS 237 (473)
Q Consensus 174 ---------i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg----~i~iwd~~~~~~~~~~~ 237 (473)
|++|++.++... ......|...+.++.|+| ++.+++..+.++ .|.+||..++.... +.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~ 268 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFRL-LV 268 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCEE-EE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceEE-ee
Confidence 999999887632 112234556777888776 556777766555 67777765554332 33
Q ss_pred CccccEEEEEecCCCeEEEee---cCCeEEEEECCCCce--eeeeec-c-CceEEEEEecccceeeeccccCCCcccCCH
Q 011978 238 GHTLAVTCVKWGGDGVIYTGS---QDCTIKVWETTQGKL--IRELKG-H-GHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 238 ~h~~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
.+...+....+..++.++.+. .++.|.+||+.++.. ...+.. + ...+..+++..
T Consensus 269 ~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~------------------- 329 (695)
T 2bkl_A 269 KGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG------------------- 329 (695)
T ss_dssp ECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEET-------------------
T ss_pred cCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEEC-------------------
Confidence 344444555554444333333 258899999877642 223322 2 33455444431
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-ccceeEEEECCCCcEEEEEE----CCCcEE
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASAS----FDKSIK 385 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~lasgs----~d~~v~ 385 (473)
...+++...|+..++|...........+..+ ...+..++++|+++.++... ..++|+
T Consensus 330 ------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 330 ------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp ------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred ------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 2346777888888877654322222333333 55677888999998776433 246899
Q ss_pred EEeCCCCce
Q 011978 386 LWNGTTGKF 394 (473)
Q Consensus 386 lwd~~~~~~ 394 (473)
+||+.+++.
T Consensus 392 ~~d~~~g~~ 400 (695)
T 2bkl_A 392 KTSVSTGKS 400 (695)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCcE
Confidence 999988764
No 192
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=6.7e-12 Score=123.30 Aligned_cols=293 Identities=15% Similarity=0.075 Sum_probs=189.7
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEC----CCCCeEEEEec-CCeEEEeeCCC
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWS----ADGKHLVSGSK-AGELQCWDPQT 181 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s----~dg~~l~s~~~-dg~i~iwd~~~ 181 (473)
..+..+.|+|||+++++++.|+.|.+||+. +.+.+..+.... ....++|+ |||++++++.. ++++.++|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356789999999999999999999999995 666666665433 35789999 69999988765 59999999888
Q ss_pred CccccccCC-C--------cCC-cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEE-ecCccccEEEEEecC
Q 011978 182 GKPSGNPLS-G--------HKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG 250 (473)
Q Consensus 182 ~~~~~~~~~-~--------~~~-~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 250 (473)
.+....... + |.. .+..+..++. ....++....+|.|.++|....+.+.. .........++.|++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~----~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p 351 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY----RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 351 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCC----CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC
Confidence 765432211 1 112 4555554442 123556667789999999876532221 112223456788999
Q ss_pred CCe-EE-EeecCCeEEEEECCCCceeeeeec-cCce----EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhc
Q 011978 251 DGV-IY-TGSQDCTIKVWETTQGKLIRELKG-HGHW----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (473)
Q Consensus 251 ~~~-l~-s~~~d~~i~~wd~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
++. ++ ++..++.|.++|..+++.+..+.. ...+ -..+ +++++
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~------------------------------ 400 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF------------------------------ 400 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT------------------------------
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCC------------------------------
Confidence 884 44 455788999999999987665432 1100 0000 11110
Q ss_pred ccCCCCceEEEe-cCCceEEEEeCCCCC------CCeeeecCcccceeEEEECCCCcEEEEEEC-------CCcEEEEeC
Q 011978 324 IKGNAPERLVSG-SDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSPDGQWVASASF-------DKSIKLWNG 389 (473)
Q Consensus 324 ~~~~~~~~l~~~-~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-------d~~v~lwd~ 389 (473)
....+++ ..+++|.++|....+ .....+......-.-+.++|+++++..... .++|.++|.
T Consensus 401 -----g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 401 -----GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp -----EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred -----CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 1123343 246889999876522 112222222222234678999999888663 358999998
Q ss_pred CCC-----c-eEEEee--------CCccCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeecccc
Q 011978 390 TTG-----K-FVAVFR--------GHVGPVYQISWSADSRLLLSGS-----KDSTLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 390 ~~~-----~-~~~~~~--------~h~~~v~~v~~sp~g~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~ 442 (473)
.+. . ....+. .-...+..+.|+|+|+++..+. .++.|.|+|..+++++..++.
T Consensus 476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 866 2 112332 1134688999999999776653 378999999999998887764
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=3e-13 Score=120.96 Aligned_cols=214 Identities=9% Similarity=0.069 Sum_probs=157.3
Q ss_pred CCceEEEeeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccC-ceEEE
Q 011978 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG-HWVNS 286 (473)
Q Consensus 209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~ 286 (473)
+.+.+++++.++.|.+||..+++.+..+..+. ..+.++.+.++|.++. +.++.|..||. +|+.+.++..+. ..+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 34678999999999999999999999888765 4678889999986655 56788999998 899988887642 34555
Q ss_pred EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC-CceEEEEeCCCCCCCee-ee----cCcc
Q 011978 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT-RM----TGHQ 360 (473)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~-~~----~~~~ 360 (473)
+...++. ..+++.+. ++.+..++.. ++.... .+ .++.
T Consensus 82 ~~~~~dG------------------------------------~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~ 124 (276)
T 3no2_A 82 ARILPDG------------------------------------NALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH 124 (276)
T ss_dssp EEECTTS------------------------------------CEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG
T ss_pred cEECCCC------------------------------------CEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc
Confidence 5444432 23445444 5666666642 211111 11 1222
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
.....+++.++|+++++.+.++.|..||.. |+.+..+..+ ....++.+.++|+.+++++.++.|..+|..+++.+.++
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 345567889999999999999999999998 9999888765 34567788899999999988889999999988887665
Q ss_pred cccC------CCEEEEEEeeCCCEEEEEe
Q 011978 441 PGHA------DEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 441 ~~h~------~~i~~l~~s~d~~~l~s~~ 463 (473)
..+. ..+..+...++|+.+++..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCCCCccccccccceEcCCCCEEEEec
Confidence 4321 2367888889998888773
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.2e-12 Score=116.86 Aligned_cols=235 Identities=9% Similarity=0.020 Sum_probs=154.6
Q ss_pred cEEEEEeceeccCCCCceEE-EeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCce
Q 011978 195 WITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 273 (473)
...++.+.+ ++..++ +.+.++.|..||..+.........+...+.++++++++.++.+..++.|..||......
T Consensus 25 ~p~~i~~~~-----~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDS-----AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECT-----TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CccceEECC-----CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence 345555544 344555 44678899999876654333223334567788999888766665588999999765433
Q ss_pred eeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC
Q 011978 274 IRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (473)
Q Consensus 274 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 352 (473)
..+. ........+++.++ ...+++...++.+..|+......
T Consensus 100 -~~~~~~~~~~p~~i~~~~~------------------------------------g~l~v~~~~~~~i~~~~~~~~~~- 141 (270)
T 1rwi_B 100 -TVLPFDGLNYPEGLAVDTQ------------------------------------GAVYVADRGNNRVVKLAAGSKTQ- 141 (270)
T ss_dssp -EECCCCSCSSEEEEEECTT------------------------------------CCEEEEEGGGTEEEEECTTCCSC-
T ss_pred -eeeecCCcCCCcceEECCC------------------------------------CCEEEEECCCCEEEEEECCCcee-
Confidence 2222 11133445544432 12345556677888887533221
Q ss_pred eeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 353 ~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
..........+.+++++|+|+++++...++.|.+||............+...+.+++++++|+++++...++.|.+||..
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 11112223457889999999988877778899999988766544433444678999999999887777778899999987
Q ss_pred CCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 433 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 433 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..........+...+.+++++++|+.+++...+++|+++.
T Consensus 222 ~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 6544333333345789999999999889999999999875
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=2e-12 Score=119.27 Aligned_cols=300 Identities=14% Similarity=0.048 Sum_probs=187.9
Q ss_pred EEECCCCCeEEEEeC-----CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEee
Q 011978 114 VAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWD 178 (473)
Q Consensus 114 ~~~sp~~~~lat~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd 178 (473)
....|++++++.... ++.|.+.|..+.+.+..+.....+ . ++++|||++++.+. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345789998887765 689999999999887777644444 4 99999999998775 367899999
Q ss_pred CCCCccccccCCCc------CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEEecCccccEEEEEecC
Q 011978 179 PQTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (473)
Q Consensus 179 ~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (473)
..+.+.......+. ......+.+ +++++++..+.. ++.|.++|+.+++.+..+.-.. +..+.-..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~-----spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g 188 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSL-----TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTA 188 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEE-----CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEE-----cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCC
Confidence 99887544321110 001112333 346677666653 6899999999999887764221 11111112
Q ss_pred CCeEEEeecCCeEEEEECCC-CceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 251 DGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 251 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
...+++.+.||++.+.++.+ ++....... .+.+... ..+..+ ... ...
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~--------~~~~~~~----------~~~~~~------------~~~-~~d 237 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTE--------VFHPEDE----------FLINHP------------AYS-QKA 237 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECC--------CCSCTTS----------CBCSCC------------EEE-TTT
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecc--------eeccccc----------cccccc------------eeE-cCC
Confidence 23567888899999999876 554221100 0000000 000000 000 012
Q ss_pred ceEEEecCCceEEEEeCCCCCCCe-eee---------cC-cccceeEEEECCCCcEEEEEEC----------CCcEEEEe
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TG-HQQLVNHVYFSPDGQWVASASF----------DKSIKLWN 388 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~-~~~---------~~-~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd 388 (473)
.+++..+.++++++.|........ ... .+ .......++++|+++.+..... .+.|.+.|
T Consensus 238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 244456668899999975432111 111 00 1223445788999888877643 24799999
Q ss_pred CCCCceEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeC
Q 011978 389 GTTGKFVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 455 (473)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d 455 (473)
..+++.+..+..- ..+.+++++||++ +|++.. .++.|.++|..+++.+.++..- ..-+.+.+++|
T Consensus 318 ~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 318 AKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 9999998887642 3678999999997 666654 5899999999999988776532 22345666766
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=3.9e-11 Score=112.08 Aligned_cols=282 Identities=13% Similarity=0.018 Sum_probs=174.0
Q ss_pred EECCCCCeEEEEeC--CC---eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeC
Q 011978 115 AFSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP 179 (473)
Q Consensus 115 ~~sp~~~~lat~s~--d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~ 179 (473)
...|++++++.+.. .. +|.+||..+++.+..+.....+ .++++|||++|+.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34578887776653 33 8899999998877666543343 899999999999875 3678999999
Q ss_pred CCCccccccCCC---c---CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEecC
Q 011978 180 QTGKPSGNPLSG---H---KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGG 250 (473)
Q Consensus 180 ~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 250 (473)
.+.+.......+ + ......+.++| ++++++.+.. +..|.++| .+++.+.. +.-. . |+.+.+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~ 174 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHP 174 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEe
Confidence 876654322111 0 01123455554 6677777663 57899999 99887766 4321 1 223333
Q ss_pred C--CeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCC
Q 011978 251 D--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 251 ~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
+ ..+++.+.||.+.++|. +++......... +. ..+........+. ..
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~--~~---~~~~p~~~~~~~~-------------------------~~ 223 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA--ML---TAAQNLLTQPAQA-------------------------NK 223 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc--cc---cCCcceeecceeE-------------------------ec
Confidence 3 35667788999999999 776653221000 00 0000000000000 00
Q ss_pred CceEEEecCCceEEEEeCCCCCCCe-eee----------cCcccceeEEEECCCCcEEEEEEC----------CCcEEEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPK-TRM----------TGHQQLVNHVYFSPDGQWVASASF----------DKSIKLW 387 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~-~~~----------~~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lw 387 (473)
...++..+..+.+.+.|........ ..+ .........++++|+++.+..+.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 1122222355677777764321110 000 001122345789999988777643 3579999
Q ss_pred eCCCCceEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978 388 NGTTGKFVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 388 d~~~~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~ 440 (473)
|..+++.+..+... ....+++|+|||+ +++++. .++.|.+||+.+++...++
T Consensus 304 D~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999998888532 3578999999999 777777 5899999999999888773
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.5e-12 Score=118.39 Aligned_cols=243 Identities=12% Similarity=0.023 Sum_probs=159.3
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
.....+.+. +++..++...++.|.+||..+++.+..+.. ......++++++++..++...++.|.+||..+++.....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 445667774 344455556689999999999988776643 456889999999844444448999999999988754322
Q ss_pred CCCc----CCcEEEEEeceeccCCCCceEEEee-CCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeec-C--
Q 011978 189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-D-- 260 (473)
Q Consensus 189 ~~~~----~~~v~~i~~~~~~~~~~~~~~~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~-d-- 260 (473)
..+. ......+.+ . ....+++.. .++.|.++|..+++.+..+... .....+.++++|.++.++. +
T Consensus 122 ~~g~~~~~~~~p~~i~~-~-----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-Y-----GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-E-----TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCT
T ss_pred EcCCccccCCCcceEEE-E-----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCcc
Confidence 1111 112333443 1 223344433 4889999999999877766432 2345677788886554443 2
Q ss_pred --------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 261 --------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 261 --------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
+.|.++|..+++....+..
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~----------------------------------------------------- 221 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKF----------------------------------------------------- 221 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEEC-----------------------------------------------------
T ss_pred CCccccCCceEEEEECCCCeEEEEEec-----------------------------------------------------
Confidence 5788888766654332110
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEE--EeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~ 410 (473)
. .......++|+|++++|..+.. .|.+||..+++... .+..+......+++
T Consensus 222 --------------~-----------~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v 274 (328)
T 3dsm_A 222 --------------K-----------LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV 274 (328)
T ss_dssp --------------C-----------TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred --------------C-----------CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence 0 0123577999999998888754 89999998887532 12222456889999
Q ss_pred ec-CCCEEEEE----eCCCcEEEEECCCCceeeccc
Q 011978 411 SA-DSRLLLSG----SKDSTLKVWDIRTQKLKQDLP 441 (473)
Q Consensus 411 sp-~g~~l~s~----s~Dg~i~iwd~~~~~~~~~~~ 441 (473)
+| ++++.++. ..++.|.+||.. ++.+.++.
T Consensus 275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 99 55566665 568899999998 77766654
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=4.9e-11 Score=108.02 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=161.7
Q ss_pred CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
.+...+.+++++++|+.+++...++.|.+||.. ++........+...+.++.+.+ ++..+++...++.|..||.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence 345678999999999877776668999999988 5543322233445677777654 3455666566788999997
Q ss_pred CCCeEEEEecCccccEEEEEecCCCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
........+......+.++.+++++.++.+ ..++.|..||. +++....
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~------------------------------ 134 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY------------------------------ 134 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE------------------------------
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe------------------------------
Confidence 633222223334456788888888765554 45677888876 4322110
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l 386 (473)
. ...+...+..++++++|++.++...++.|..
T Consensus 135 --------------------------------------~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 135 --------------------------------------E----------LPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp --------------------------------------E----------CSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred --------------------------------------c----------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 0 0001124678899999988887777789999
Q ss_pred EeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-cccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 387 WNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 387 wd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
||. +++.... ...+...+.+++++++|++.++...++.|.+||. +++... .+..+...+.++.++++|+.+++...
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence 998 6665443 3334556889999999998777767889999999 655432 23445567899999999997777667
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
++.|..|.
T Consensus 245 ~~~i~~~d 252 (299)
T 2z2n_A 245 ANKIGRLT 252 (299)
T ss_dssp TTEEEEEE
T ss_pred CceEEEEC
Confidence 77777764
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=7.6e-13 Score=135.91 Aligned_cols=273 Identities=14% Similarity=0.061 Sum_probs=165.3
Q ss_pred CCCCeEEEEeCCC---eEEEEe--CC---CCceeEEE------cCCCCCEEEEEECCCCCeEEEEecC-----CeEEEee
Q 011978 118 PDGRQLASGSGDT---TVRLWD--LN---TQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWD 178 (473)
Q Consensus 118 p~~~~lat~s~d~---~i~iwd--~~---~~~~~~~~------~~~~~~v~~l~~s~dg~~l~s~~~d-----g~i~iwd 178 (473)
|+|++++....++ .-.+|- .. ++.....+ .+|...+..++|||||++|+.+..+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 8999888665433 245554 33 33322211 2333468899999999999877654 3699999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCc--------------EEEEECCCCe----EEEEecCcc
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGHT 240 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~--------------i~iwd~~~~~----~~~~~~~h~ 240 (473)
+.+++...... +...+..+.|+| + ..|+.++.++. |++|++.++. .+.....+.
T Consensus 196 l~tg~~~~~~~--~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~ 267 (741)
T 1yr2_A 196 VADGKPLADEL--KWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP 267 (741)
T ss_dssp TTTCCEEEEEE--EEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred CCCCCCCCccC--CCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence 99887532111 111113455655 5 67777766554 8899987654 333334444
Q ss_pred ccEEEEEecCCC-eEEEeecC-----CeEEEEECCCC--ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 241 LAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 241 ~~v~~~~~~~~~-~l~s~~~d-----~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
..+..+.|++|| .|+..+.+ ..|++||+.++ +....+..+...+..... ++
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~d-------------------- 326 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GV-------------------- 326 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EE--------------------
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-cc--------------------
Confidence 468899999998 35554433 48999998776 313334333222221111 11
Q ss_pred HHHHHHhhhhcccCCCCceEEEecC----CceEEEEeCCCCC-CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEE
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lw 387 (473)
.+.++..+. ++.|.+||..... ........+...+..++++ ++.++++...|+..+||
T Consensus 327 ----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 327 ----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 122333332 4568889876532 2233344555567777887 67788888899987777
Q ss_pred eCC-CCceEEEeeC-CccCEEEEEEecCCCEEEEE----eCCCcEEEEECCCCce
Q 011978 388 NGT-TGKFVAVFRG-HVGPVYQISWSADSRLLLSG----SKDSTLKVWDIRTQKL 436 (473)
Q Consensus 388 d~~-~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~----s~Dg~i~iwd~~~~~~ 436 (473)
... +++....+.. +.+.+..++++|++..|+.. ...++|++||+.+++.
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 544 4555666654 36678999999998866522 2357899999987653
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=2.2e-11 Score=111.29 Aligned_cols=242 Identities=10% Similarity=0.140 Sum_probs=157.0
Q ss_pred ccEEEEEECCCCCeEEE-------EeCCCeEEEEeCCCCceeEEEc----CCCCCEEEEEECCC-CCeEEEEecCCeEEE
Q 011978 109 EAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQC 176 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat-------~s~d~~i~iwd~~~~~~~~~~~----~~~~~v~~l~~s~d-g~~l~s~~~dg~i~i 176 (473)
....+++|+++|..+++ +..++.|.+||..+++...... ++...+.+++++++ |+ |..++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEE
Confidence 45678999999988877 5778999999987765432211 24467899999999 65 444444558999
Q ss_pred eeCCCCccccc-cC--CC-cCCcEEEEEeceeccCCCCceEEEeeCC---------------CcEEEEECCCCeEEEEec
Q 011978 177 WDPQTGKPSGN-PL--SG-HKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVICLS 237 (473)
Q Consensus 177 wd~~~~~~~~~-~~--~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~d---------------g~i~iwd~~~~~~~~~~~ 237 (473)
||.+ ++.... .. .+ ....+.++.+.+ ++..+++...+ +.|..||.. ++.... .
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~ 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-D 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-E
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-c
Confidence 9987 654321 11 11 123456666654 34455555444 456666655 443322 2
Q ss_pred CccccEEEEEec----CCC-eEEEe-ecCCeEEEEECC-CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 238 GHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 238 ~h~~~v~~~~~~----~~~-~l~s~-~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
.+......++++ +++ .++.+ ..++.|.+||.. +++....
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~---------------------------------- 214 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK---------------------------------- 214 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------------------------------
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------------------------------
Confidence 233345778888 887 45444 567889988864 2221100
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc-cceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
..+. .+.++. ..+..++++++|++.++...++.|.+||.
T Consensus 215 -------------------------------~~~~---------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 215 -------------------------------KVWG---------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp -------------------------------EEEE---------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred -------------------------------eEEE---------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 0000 000111 23567899999999888888899999999
Q ss_pred CCCceEEEeeCCccCEEEEEEecCCCEEE-EEeCCCcEEEEECCC
Q 011978 390 TTGKFVAVFRGHVGPVYQISWSADSRLLL-SGSKDSTLKVWDIRT 433 (473)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~-s~s~Dg~i~iwd~~~ 433 (473)
.+++.+..+..+...+.+++|+|+|+.|. +...++.|..|++..
T Consensus 255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 87877777777777899999999999554 445568899999865
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.4e-11 Score=110.03 Aligned_cols=232 Identities=12% Similarity=0.126 Sum_probs=150.5
Q ss_pred EEEEEeceeccCCCCceEEE-------eeCCCcEEEEECCCCeEEEEec----CccccEEEEEecCC-CeEEEeecCCeE
Q 011978 196 ITGISWEPVHLNAPCRRFVS-------ASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD-GVIYTGSQDCTI 263 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s-------~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~l~s~~~d~~i 263 (473)
..++.|.+ ++..+++ +..++.|..||..+++...... ++...+.++.++++ +.++.++..+.|
T Consensus 20 ~~~~~~~~-----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 20 AEGPVFDK-----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CEEEEECT-----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred ccCceECC-----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence 34555543 3345555 5778899999987776543322 25567889999998 887777766689
Q ss_pred EEEECCCCceeee-eec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 264 KVWETTQGKLIRE-LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 264 ~~wd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
.+||.. ++.... ... ....+..+++.++.. .+++...+
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~------------------------------------l~v~~~~~ 137 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN------------------------------------LWITAPAG 137 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC------------------------------------EEEEECBC
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC------------------------------------EEEEecCc
Confidence 999987 665332 211 112244444443321 22332222
Q ss_pred ---------------ceEEEEeCCCCCCCeeeecCcccceeEEEEC----CCCcEEEEE-ECCCcEEEEeCC-CCc----
Q 011978 339 ---------------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS----PDGQWVASA-SFDKSIKLWNGT-TGK---- 393 (473)
Q Consensus 339 ---------------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s----p~g~~lasg-s~d~~v~lwd~~-~~~---- 393 (473)
+.+..++.. . . ......+......++++ |+++.|..+ ..++.|.+||.. +++
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 138 EVAPADYTRSMQEKFGSIYCFTTD-G-Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp BCTTSCCCBTTSSSCEEEEEECTT-S-C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred ccccccccccccCCCCeEEEECCC-C-C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 456666653 1 1 22222233456789999 999766555 467899999976 454
Q ss_pred -eEEEeeCCc-cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEE-EEEeCCCcEEe
Q 011978 394 -FVAVFRGHV-GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKL 470 (473)
Q Consensus 394 -~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~~ 470 (473)
....+.++. ..+..++++++|+++++...++.|.+||..+++....+..+...+.+++|+|||+.| ++...++.|..
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 223344443 568899999999988888888999999998776666665566789999999999955 45555677766
Q ss_pred cc
Q 011978 471 WM 472 (473)
Q Consensus 471 w~ 472 (473)
|.
T Consensus 295 ~~ 296 (314)
T 1pjx_A 295 FE 296 (314)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 202
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.47 E-value=5.5e-12 Score=127.49 Aligned_cols=312 Identities=14% Similarity=0.136 Sum_probs=188.2
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----------E-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+..|+.++.++.|.-+|..+++.+......... + ..++. ++..|+.++.|+.|..+|..+|+.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667778888999999999999988876533210 0 11222 3568889999999999999999865332
Q ss_pred CCC-cCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEecC--cc-------------------
Q 011978 189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG--HT------------------- 240 (473)
Q Consensus 189 ~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~~~--h~------------------- 240 (473)
... +......+...|... ...++.++ .++.|..||..+++.+..+.. +.
T Consensus 148 ~~~~~~~~~~~~~~sP~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV---NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCcCCCCCCccccCCcEEE---CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 211 111101111112111 23444443 368999999999998876531 00
Q ss_pred ----------ccEEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 241 ----------LAVTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 241 ----------~~v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
..-..++++++ +.++.+..++ .|..+|..+|+.+..++...+........
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 00113566654 5777777665 39999999999887765421111000000
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-----------
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----------- 359 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------- 359 (473)
....+.... ..+.....++.++.+|.++++|...++........+
T Consensus 305 ~~~~l~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 305 QHMILAELP------------------------IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp SCEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred CCcEEEeec------------------------cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 000000000 000111257788899999999976654321110000
Q ss_pred ----------------c-----------cceeEEEECCCCcEEEEEEC--------------------------------
Q 011978 360 ----------------Q-----------QLVNHVYFSPDGQWVASASF-------------------------------- 380 (473)
Q Consensus 360 ----------------~-----------~~v~~v~~sp~g~~lasgs~-------------------------------- 380 (473)
. ..-..++|+|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0 00123789998888777632
Q ss_pred -------------CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-C
Q 011978 381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-E 446 (473)
Q Consensus 381 -------------d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~ 446 (473)
+|.|+.||+.+|+.+-.++.+. ++..-.++..+.+++.++.||.++.||.++++.+.++..... .
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 3779999999999887776543 333345667788999999999999999999998866543322 2
Q ss_pred EEEEEEeeCCCEEEE
Q 011978 447 VFAVDWSPDGEKVAS 461 (473)
Q Consensus 447 i~~l~~s~d~~~l~s 461 (473)
..-+.|+.||+.++.
T Consensus 520 ~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 520 AAPVTYSVDGEQYVT 534 (689)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCceEEEECCEEEEE
Confidence 234677889885543
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=6e-11 Score=111.45 Aligned_cols=282 Identities=15% Similarity=0.076 Sum_probs=173.7
Q ss_pred CCCCeEEEEeC-C----CeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCC
Q 011978 118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (473)
Q Consensus 118 p~~~~lat~s~-d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~ 182 (473)
|++++++.+.. + +.|.++|..+.+.+..+..-..+ .++++|||++|+.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 56777666544 3 79999999999888777644455 799999999998876 3678999999988
Q ss_pred ccccccCCC-c-----CCcEEEEEeceeccCCCCceEEEeeC--CCcEEEEECCCCeEEEEecCccccEEEEEecCCCeE
Q 011978 183 KPSGNPLSG-H-----KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (473)
Q Consensus 183 ~~~~~~~~~-~-----~~~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l 254 (473)
+.......+ . ......+. +++++++++.+.. ++.|.+.|+.+++.+..+.-... ..+.-.....+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~-----~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~ 232 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNA-----LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVF 232 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSE-----ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred cEEEEEECCCccccccCCCcceEE-----EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEE
Confidence 754332111 0 00111222 3446677777653 57899999999988776643111 11111122356
Q ss_pred EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 255 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
++.+.||++.+.+..+++...... + + +............+ ......++.
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~-~---~--~~v~~~p~~~~~~~-------------------------~~dg~~~~~ 281 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNT-E---V--FHTEDELLINHPAF-------------------------SLRSGRLVW 281 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEEC-C---C--CSCTTSCBCSCCEE-------------------------CTTTCEEEE
T ss_pred EEEcCCCCEEEEECCCCcEEEEee-e---e--eccCCCceeeEeee-------------------------cCCCCEEEE
Confidence 677788888888875555432110 0 0 00000000000000 011234444
Q ss_pred ecCCceEEEEeCCCCCCCe---eeec--------CcccceeEEEECCCCcEEEEEEC----------CCcEEEEeCCCCc
Q 011978 335 GSDDFTMFLWEPAVSKQPK---TRMT--------GHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGK 393 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~---~~~~--------~~~~~v~~v~~sp~g~~lasgs~----------d~~v~lwd~~~~~ 393 (473)
.+..+.+.+.|........ ..+. ........++++|+++.+..... ++.|.++|..+.+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 4566788888864322100 0000 01111223789999887666532 3579999999999
Q ss_pred eEEEeeCCccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecc
Q 011978 394 FVAVFRGHVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 394 ~~~~~~~h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~ 440 (473)
.+..+.... ....++|+|||+ +++++. .++.|.++|+.+++.+.++
T Consensus 362 vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 988876422 478899999999 888887 5999999999999988876
No 204
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.45 E-value=1.9e-10 Score=108.04 Aligned_cols=308 Identities=9% Similarity=0.022 Sum_probs=186.5
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCC---------CCCEE-EEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~---------~~~v~-~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
++..++.++.++.|..+|..+++.+...... ...+. .+.. ++..++.++.++.|..+|..+|+.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3667888888999999999999887665432 12232 2222 4568888999999999999998754321
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccE-----EEEEecCCCeEEEeecCCeE
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTI 263 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~s~~~d~~i 263 (473)
... . .+ ...|.. ....++.++.++.+..+|..+++.+.......... ...... ++.++.+..++.+
T Consensus 130 ~~~-~-~~---~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l 200 (376)
T 3q7m_A 130 KVA-G-EA---LSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRV 200 (376)
T ss_dssp ECS-S-CC---CSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEE
T ss_pred eCC-C-ce---EcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEE
Confidence 111 0 00 001111 13467788889999999999998876654322111 111112 5678889999999
Q ss_pred EEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEE
Q 011978 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (473)
Q Consensus 264 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 343 (473)
..+|..+|+.+.........-.. ... .+ .+.. .........++.++.++.+..
T Consensus 201 ~~~d~~tG~~~w~~~~~~~~~~~-~~~---~~----~~~~-------------------~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 201 SAVLMEQGQMIWQQRISQATGST-EID---RL----SDVD-------------------TTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp EEEETTTCCEEEEEECCC-------------------CCC-------------------CCCEEETTEEEEECTTSCEEE
T ss_pred EEEECCCCcEEEEEecccCCCCc-ccc---cc----cccC-------------------CCcEEECCEEEEEecCcEEEE
Confidence 99999999887665432110000 000 00 0000 000001245777778889999
Q ss_pred EeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC-CccCEEEEEEecCCCEEEEEeC
Q 011978 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 344 wd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~ 422 (473)
+|....+....... .....+.. ++..|..++.++.+..+|..+|+.+..... ....+..... .+..|+.++.
T Consensus 254 ~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 254 LDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred EECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 98765543222211 12233333 466788888899999999999998766652 1222222222 2567888889
Q ss_pred CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|.++++|..+++.+.........+...-... +..|..++.||.|..|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 99999999999987655443222232211112 45788899999998875
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.1e-11 Score=127.25 Aligned_cols=269 Identities=12% Similarity=-0.008 Sum_probs=159.3
Q ss_pred CCCCeEEEEecCCe---EEEee--CC---CCcccc-----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCC-----Cc
Q 011978 160 ADGKHLVSGSKAGE---LQCWD--PQ---TGKPSG-----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GD 221 (473)
Q Consensus 160 ~dg~~l~s~~~dg~---i~iwd--~~---~~~~~~-----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d-----g~ 221 (473)
|||++++....++. -.+|. .. .++... ....+|...+..+.|+| ++.+++.++.+ ..
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP-----DG~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASD-----DGRLLAYSVQDGGSDWRT 190 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECT-----TSSEEEEEEEETTCSEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECC-----CCCEEEEEEcCCCCceEE
Confidence 67777776554432 34443 32 222111 01233434566777776 56777766543 36
Q ss_pred EEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCe--------------EEEEECCCCce----eeeeeccCce
Q 011978 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCT--------------IKVWETTQGKL----IRELKGHGHW 283 (473)
Q Consensus 222 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~--------------i~~wd~~~~~~----~~~~~~~~~~ 283 (473)
|++||+.+++.+... .+...+..++|++|..|+.++.|+. |++|++.++.. +.....+...
T Consensus 191 i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 191 VKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 999999998875431 1112235678998854666655543 88999877652 2222222234
Q ss_pred EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecC-----CceEEEEeCCCCCCC-eeeec
Q 011978 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-----DFTMFLWEPAVSKQP-KTRMT 357 (473)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~-~~~~~ 357 (473)
+..+.++++.. .++..+. ...+++||....... ...+.
T Consensus 270 ~~~~~~SpDG~------------------------------------~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 270 GHGASVSSDGR------------------------------------WVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp EEEEEECTTSC------------------------------------EEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred EEEEEECCCCC------------------------------------EEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 56666666532 2332222 347888987654212 33344
Q ss_pred CcccceeEEEECCCCcEEEEEECC----CcEEEEeCCCC--ceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 358 GHQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTG--KFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 358 ~~~~~v~~v~~sp~g~~lasgs~d----~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
.+....... ++|+|+.|+..+.+ +.|.+||+.++ +....+..+...+.+++|+ ++.++++...|+..+||.+
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 444444444 34899998888764 45999998874 3444555555567788887 6678888888998777755
Q ss_pred C-CCceeecccc-cCCCEEEEEEeeCCCEEE----EEeCCCcEEecc
Q 011978 432 R-TQKLKQDLPG-HADEVFAVDWSPDGEKVA----SGGKDRVLKLWM 472 (473)
Q Consensus 432 ~-~~~~~~~~~~-h~~~i~~l~~s~d~~~l~----s~~~D~~i~~w~ 472 (473)
. .++....+.. +...+..++++||++.|+ +....++|.+|+
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 4 3444555554 356788999999998776 223346677764
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=1.1e-09 Score=99.00 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=157.3
Q ss_pred CCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 149 ~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
....+.++++.++|+..++...++.|.+||.. ++.....+......+.++.+.+ ++..+++...++.|..+|..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence 34568899999999877777778999999987 5543322333335566776543 34456655557889999987
Q ss_pred CCeEE-EEecCccccEEEEEecCCCeEEEee-cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcc
Q 011978 229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (473)
Q Consensus 229 ~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
++.. .........+.++++++++.++.+. .++.|..+|.. ++... +
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~----------------------------- 139 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-Y----------------------------- 139 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-E-----------------------------
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-c-----------------------------
Confidence 5443 2333334567888888777655544 36677777654 32211 0
Q ss_pred cCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEE
Q 011978 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~l 386 (473)
. .......+..++++++|++.++...++.|..
T Consensus 140 --------------------------------------~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 140 --------------------------------------D----------LPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp --------------------------------------E----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred --------------------------------------c----------CCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 0 0001124678899999997776666788999
Q ss_pred EeCCCCceEEE-eeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-ecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 387 WNGTTGKFVAV-FRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 387 wd~~~~~~~~~-~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
+|. +++.... ...+...+.+++++++|++.++....+.|.+||. .++.. ..+..+...+.+++++++|+..++...
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC
Confidence 998 5654432 2234457899999999987777666778999998 44432 234444567899999999987777766
Q ss_pred CCcEEecc
Q 011978 465 DRVLKLWM 472 (473)
Q Consensus 465 D~~i~~w~ 472 (473)
++.|..|.
T Consensus 250 ~~~i~~~~ 257 (300)
T 2qc5_A 250 ANQIGRIT 257 (300)
T ss_dssp TTEEEEEC
T ss_pred CCeEEEEC
Confidence 77777664
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=2.3e-10 Score=108.32 Aligned_cols=238 Identities=13% Similarity=0.122 Sum_probs=152.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC--eEEEeeCCCCcccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSG 186 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~ 186 (473)
.....++|+|+++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4678999999999777777789999999988765444333222 33 99999999999888765 78888764332100
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecCCeEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKV 265 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~i~~ 265 (473)
.+. .. .......+.++++++ ++.|+.+..++.|+.
T Consensus 209 -----------~~g-------------------------~~--------~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~ 244 (409)
T 3hrp_A 209 -----------RIG-------------------------QL--------GSTFSGKIGAVALDETEEWLYFVDSNKNFGR 244 (409)
T ss_dssp -----------EEE-------------------------EC--------CTTSCSCCCBCEECTTSSEEEEECTTCEEEE
T ss_pred -----------Eee-------------------------ec--------cchhcCCcEEEEEeCCCCeEEEEECCCcEEE
Confidence 000 00 000122345567787 677777777889999
Q ss_pred EECCCCceeee----eeccCceE--EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 266 WETTQGKLIRE----LKGHGHWV--NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 266 wd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
||..++..... ..+....- ..+++++. ....+++...++
T Consensus 245 ~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~-----------------------------------~g~lyv~d~~~~ 289 (409)
T 3hrp_A 245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV-----------------------------------DSNFYMSDQNLS 289 (409)
T ss_dssp EETTTCCEEEEEECCCCSCCCCSSCCEEEEETT-----------------------------------TTEEEEEETTTT
T ss_pred EECCCCCEEEEecccccCCCCCCccccEEEeCC-----------------------------------CCEEEEEeCCCC
Confidence 99876653211 11111111 13333331 122355556677
Q ss_pred eEEEEeCCCCCCCeeeecCc---------------ccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCC--
Q 011978 340 TMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGH-- 401 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~---------------~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h-- 401 (473)
.|+.|+.... ...+.++ -.....++++|+|+++++-+ .++.|+.||..+++. ..+.++
T Consensus 290 ~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 290 SVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp EEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred EEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 7888875432 1222221 23478999999999888877 789999999877764 333333
Q ss_pred -------------ccCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011978 402 -------------VGPVYQISWSADSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 402 -------------~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~ 431 (473)
......++++|+|.++++-..++.|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246889999999888888778888887765
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.41 E-value=6.2e-12 Score=116.57 Aligned_cols=263 Identities=14% Similarity=0.111 Sum_probs=156.4
Q ss_pred ccEEEEEECCCCCeEEEEe--CCCeEEEEeCCCCceeEEE-------cCCCCCEEEEEECCCCCeEEEEec-----CCeE
Q 011978 109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL 174 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s--~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~s~dg~~l~s~~~-----dg~i 174 (473)
..+..++++|+|+.+++.. .++.++||.+.+++ +..+ ..+-..+..++++++|+++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5678899999999888864 23436666654433 2222 134567999999999876555433 5799
Q ss_pred EEeeCCCCcccccc-C----CCcCCcEEEEEeceeccCCCCceEEEee---CCCcEEEEECCCCeEEEEecCccccEE-E
Q 011978 175 QCWDPQTGKPSGNP-L----SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLRKCVICLSGHTLAVT-C 245 (473)
Q Consensus 175 ~iwd~~~~~~~~~~-~----~~~~~~v~~i~~~~~~~~~~~~~~~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~v~-~ 245 (473)
.+||+.+++..... + ..+...++.+.+.+. .+..+++.. .++.|.+||+.+++....+.+|..... .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~----~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI----HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT----TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC----CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 99999988743211 1 112234466666541 123445555 678899999887766555544321100 0
Q ss_pred EEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhccc
Q 011978 246 VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (473)
Q Consensus 246 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (473)
..+..++.
T Consensus 172 ~~~~~~g~------------------------------------------------------------------------ 179 (343)
T 2qe8_A 172 IDLVIDGV------------------------------------------------------------------------ 179 (343)
T ss_dssp CCCEETTE------------------------------------------------------------------------
T ss_pred cceeECCE------------------------------------------------------------------------
Confidence 00000110
Q ss_pred CCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC-cEEEEeCC---CCc-----eEE
Q 011978 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGT---TGK-----FVA 396 (473)
Q Consensus 326 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~-~v~lwd~~---~~~-----~~~ 396 (473)
.+.+.+.++.+..|. ..+..++|+|+|+.|+.+..++ .+..++.. .+. ...
T Consensus 180 -----~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 180 -----PVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp -----ECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred -----EEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 011222233333332 1356799999999998887766 44444421 111 000
Q ss_pred --EeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-cCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 397 --VFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 397 --~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
...++.+....++++++|+++++...++.|.+||..+++....... +.....+++|.++|+.+++.+..+.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 1113344566799999999999988899999999855554322221 24568899999999988887765544
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=9.8e-10 Score=102.57 Aligned_cols=265 Identities=11% Similarity=-0.002 Sum_probs=164.9
Q ss_pred ECCCCCeEEEEec--CC---eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCCcE
Q 011978 158 WSADGKHLVSGSK--AG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDA 222 (473)
Q Consensus 158 ~s~dg~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg~i 222 (473)
..|+++++++... .+ .|.++|..+++.......+ ... .+.++| +++++..+. .++.|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp-----Dg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH-----SGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC-----CCCEEEEEeccccccccCCCCCeE
Confidence 3467777776653 22 8899999988765433222 222 566655 555666554 36789
Q ss_pred EEEECCCCeEEEEecCc-------cccEEEEEecCCCe-EEEeec--CCeEEEEECCCCceeee-eeccCceEEEEEecc
Q 011978 223 RIWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGSQ--DCTIKVWETTQGKLIRE-LKGHGHWVNSLALST 291 (473)
Q Consensus 223 ~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~ 291 (473)
.+||..+.+.+..+.-. ......+.|++||. |+.+.. ++.|.++| .+++.+.. +..... +.+.+
T Consensus 100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~ 174 (373)
T 2mad_H 100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHP 174 (373)
T ss_pred EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEe
Confidence 99999887776654311 12234688999984 666553 57899999 99888766 433221 11111
Q ss_pred cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee-----cCcccceeEE
Q 011978 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHV 366 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v 366 (473)
. ....+++.+.|+.+.+++. ..+...... .+........
T Consensus 175 ~-----------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 175 G-----------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred C-----------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 1 1224556667888888887 433221100 1111112334
Q ss_pred EECCCCcEEEEEECCCcEEEEeCCCCc--eEEEeeCC----------ccCEEEEEEecCCCEEEEEeC----------CC
Q 011978 367 YFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGH----------VGPVYQISWSADSRLLLSGSK----------DS 424 (473)
Q Consensus 367 ~~sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~~h----------~~~v~~v~~sp~g~~l~s~s~----------Dg 424 (473)
.+.+++..++..+..+.+.+.|..++. .+..+.-. ......++++||++.|..+.. ++
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 566666555555577889999987553 22222110 122445788999988777653 35
Q ss_pred cEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978 425 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM 472 (473)
Q Consensus 425 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~ 472 (473)
.|.++|..+++.+.++.. .....++.|+|||+ .++++. .++.|.+++
T Consensus 299 ~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred eEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 799999999998887753 23578999999999 777777 588998875
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=4.4e-10 Score=101.84 Aligned_cols=228 Identities=10% Similarity=0.117 Sum_probs=144.1
Q ss_pred EEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 111 V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
-....|+|++.. +++...++.|..||..++... .+ .....+.+++++++|+++++ . ++.|.+||.++++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence 456889996554 555567899999999876542 22 23467999999999995554 3 5789999998776422111
Q ss_pred --CC-cCCcEEEEEeceeccCCCCceEEEeeC---------CCcEEEEECCC-CeEEEEecCccccEEEEEecCCCe-E-
Q 011978 190 --SG-HKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-I- 254 (473)
Q Consensus 190 --~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~---------dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l- 254 (473)
.+ ....++.+.+.| ++..+++... ...-.+|.+.. ++... +..+......++|++++. +
T Consensus 91 ~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp CCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEE
T ss_pred cCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEE
Confidence 11 123356666554 3444443322 13345555542 22222 222333456788998873 4
Q ss_pred EEeecCCeEEEEEC--CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceE
Q 011978 255 YTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (473)
Q Consensus 255 ~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 332 (473)
++.+.++.|..|++ .+|..... + .+
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~-~----------------------------------------------------~~ 191 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNR-R----------------------------------------------------SV 191 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEE-E----------------------------------------------------EE
T ss_pred EecCCCCcEEEEeccCCCCcccCc-E----------------------------------------------------EE
Confidence 45566788888876 34432100 0 00
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS- 411 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s- 411 (473)
+ + +..+...+..++++++|++.++...++.|..||..+++.+..+..+...+++++|.
T Consensus 192 ~-----------~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 192 Y-----------K----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp E-----------E----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred E-----------E----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence 0 0 00112345678999999988888888899999999999998888777789999998
Q ss_pred cCCCEEEEEeC
Q 011978 412 ADSRLLLSGSK 422 (473)
Q Consensus 412 p~g~~l~s~s~ 422 (473)
||++.|..++.
T Consensus 251 ~d~~~L~vt~~ 261 (297)
T 3g4e_A 251 KNYSEMYVTCA 261 (297)
T ss_dssp GGGCEEEEEEB
T ss_pred CCCCEEEEEcC
Confidence 88887665543
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=1.1e-09 Score=99.08 Aligned_cols=233 Identities=11% Similarity=0.052 Sum_probs=145.5
Q ss_pred EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceee
Q 011978 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 275 (473)
-.+..|.|. ....+++...++.|..||..+++.... .....+.++++++++.++.+. ++.|.+||..+++...
T Consensus 15 ~Egp~w~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 15 GESPVWEEV----SNSLLFVDIPAKKVCRWDSFTKQVQRV--TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEEEEEETTTCCEEEE--ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEE
T ss_pred ccCCeEECC----CCEEEEEECCCCEEEEEECCCCcEEEE--eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEE
Confidence 445566542 234556666788999999987765322 234568899999998776665 6789999998776533
Q ss_pred eeec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 276 ELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 276 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
.... ....++.+++.++..+..+........ .......+.++.++.. ..
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~-------------------------~~~~~~~~~l~~~d~~--g~ 140 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP-------------------------AVLERHQGALYSLFPD--HH 140 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT-------------------------TBCCTTCEEEEEECTT--SC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCccccc-------------------------ccccCCCcEEEEEECC--CC
Confidence 2221 123355566655432211111000000 0000012334444432 11
Q ss_pred CeeeecCcccceeEEEECCCCcEEE-EEECCCcEEEEeC--CCCceE-----EEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978 352 PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNG--TTGKFV-----AVFRGHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 352 ~~~~~~~~~~~v~~v~~sp~g~~la-sgs~d~~v~lwd~--~~~~~~-----~~~~~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
......+....+.++|+||++.|+ +.+.++.|.+||+ .++... ..+..+.+....++++++|++.++...+
T Consensus 141 -~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 141 -VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp -EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred -EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 222223334568899999998765 4555788999987 455432 2233344568899999999988888778
Q ss_pred CcEEEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEe
Q 011978 424 STLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG 463 (473)
Q Consensus 424 g~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~ 463 (473)
+.|..||..+++.+..+..+...+++++|. ||++.|..++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 899999999888888777776789999998 8888765444
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=5.2e-11 Score=120.14 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=187.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----------CEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-----------WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+..|+.++.++.|.-+|..+++.+........ ....+++ ++..|+.++.|+.|..+|..+|+.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 56677777889999999999998877653321 0112233 4668889999999999999999865432
Q ss_pred CCC-cCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCcccc-------------------
Q 011978 189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA------------------- 242 (473)
Q Consensus 189 ~~~-~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~------------------- 242 (473)
... .......+.-.|.. ....++.++. ++.|..+|..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 111 00000000011111 1234555443 689999999999988765421110
Q ss_pred -------------EEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEe
Q 011978 243 -------------VTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLAL 289 (473)
Q Consensus 243 -------------v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 289 (473)
...++++++ +.++.+..++ .|..+|..+|+.+..++...+.......
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 123456654 4677665553 5889999999888766532111000000
Q ss_pred cccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCccc--------
Q 011978 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ-------- 361 (473)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------- 361 (473)
...-.+... ...+.....++.++.+|.++++|...++...........
T Consensus 312 ~~~p~l~~~------------------------~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~ 367 (677)
T 1kb0_A 312 TQPMILADI------------------------KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH 367 (677)
T ss_dssp CSCCEEEEE------------------------EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred CCCcEEEec------------------------ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCC
Confidence 000000000 000001135788889999999997665432211111000
Q ss_pred --c------------------------eeEEEECCCCcEEEEEECC----------------------------------
Q 011978 362 --L------------------------VNHVYFSPDGQWVASASFD---------------------------------- 381 (473)
Q Consensus 362 --~------------------------v~~v~~sp~g~~lasgs~d---------------------------------- 381 (473)
. -..++|+|++.++++...+
T Consensus 368 g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 0 0257899998888776432
Q ss_pred ---------CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccC-CCEEEEE
Q 011978 382 ---------KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVD 451 (473)
Q Consensus 382 ---------~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~ 451 (473)
+.|..||+.+++.+-.++. ..++....++.++..++.++.||.+++||.++++.+..+.... ....-+.
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~ 526 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPST 526 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEE
Confidence 6799999999998877653 3344555667788888999999999999999999887665322 2223456
Q ss_pred EeeCCCEEEEE
Q 011978 452 WSPDGEKVASG 462 (473)
Q Consensus 452 ~s~d~~~l~s~ 462 (473)
|+++|+.++..
T Consensus 527 y~~~G~~~v~~ 537 (677)
T 1kb0_A 527 YMVDGRQYVSV 537 (677)
T ss_dssp EEETTEEEEEE
T ss_pred EEeCCEEEEEE
Confidence 77898765543
No 213
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=4.8e-11 Score=108.13 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=130.9
Q ss_pred CccccEEEEEecCCCe--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 238 GHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 238 ~h~~~v~~~~~~~~~~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
.+.....++.|++++. ++++..++.|..||..++ ...+..+...+..++++++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---------------------- 80 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---------------------- 80 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC----------------------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC----------------------
Confidence 3445567889998874 677888999999998876 55565555666777665542
Q ss_pred HHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee--ecC-cccceeEEEECCCCcEEEEE----E---------
Q 011978 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTG-HQQLVNHVYFSPDGQWVASA----S--------- 379 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~-~~~~v~~v~~sp~g~~lasg----s--------- 379 (473)
..+++...++.|.+||.......... ..+ ....++.++++|+|+++++. +
T Consensus 81 --------------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 81 --------------HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp --------------CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred --------------cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 23555556688999997544321110 011 12346789999999998873 3
Q ss_pred ----CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCce---eecccccCCCEEEEE
Q 011978 380 ----FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-TQKL---KQDLPGHADEVFAVD 451 (473)
Q Consensus 380 ----~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-~~~~---~~~~~~h~~~i~~l~ 451 (473)
..+.|..++.. ++. ..+..+......++|+|||+.|++.+.++.|++||+. .++. ...+..+...+.+++
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 12456666655 443 4445566778999999999988777788999999986 4443 222233445567899
Q ss_pred EeeCCCEEEEEeCCCcEEecc
Q 011978 452 WSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 452 ~s~d~~~l~s~~~D~~i~~w~ 472 (473)
++++|+.+++. ++.|.+|.
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEEC
T ss_pred ECCCCCEEEEc--CCeEEEEC
Confidence 99999877766 77888875
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.4e-11 Score=114.01 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=127.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEee
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd 178 (473)
.++.+++++...++++|+.+ .+++|+++... +.... .+.. |..|+| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68899999999999999998 45569864322 21222 3556 999999 89999998 889999999
Q ss_pred CCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEee
Q 011978 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~ 258 (473)
+.+... ......|...+..+.+.+. .+++++.||.+.+||+..+.... +...|+|++|+++| ++.|.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p-------~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~ 179 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL 179 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred chhhhc-cCccceeecceeeEEecCC-------CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence 876542 2234456667777665431 38899999999999999877653 45689999999999 67899
Q ss_pred cCCeEEEEECCCCce--eeee------e---ccCceEEEEEecccceeee
Q 011978 259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRT 297 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~ 297 (473)
.||++++|+...+.. .+.+ . +|...|.++.+.+++.+..
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 999999998877664 4444 2 3678899999887765543
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.7e-11 Score=113.49 Aligned_cols=181 Identities=11% Similarity=-0.028 Sum_probs=111.9
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
.+..|++++....+++|+.+ .+.+|++++.+..... .... +.| .
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~---~~~~-----~~~---------------------------~ 82 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITS---DSTP-----LTF---------------------------K 82 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHS---SSCC-----CCC---------------------------S
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcc---cccc-----ccc---------------------------e
Confidence 58889999999999999987 5556986543210000 0000 000 0
Q ss_pred EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
... .+.. |+.++| .+..|+++ .++.|++||+.+.........+...+..+...+
T Consensus 83 ~~~---~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-------------------- 136 (388)
T 1xip_A 83 WEK---EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-------------------- 136 (388)
T ss_dssp EEE---ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS--------------------
T ss_pred EEe---eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC--------------------
Confidence 000 1223 556666 55555555 666666666655444444444444443332111
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
+ .++.++.||.+.+||+...... .+...|+|++|||+| ++.|..||++++|+...
T Consensus 137 -----------------p-~~av~~~dG~L~v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 137 -----------------N-TLVILNSVNDLSALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp -----------------S-EEEEEETTSEEEEEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred -----------------C-CEEEEECCCCEEEEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence 1 2556666777777776533221 134579999999999 78899999999999887
Q ss_pred Cce--EEEe------e---CCccCEEEEEEecCCCEEEE
Q 011978 392 GKF--VAVF------R---GHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 392 ~~~--~~~~------~---~h~~~v~~v~~sp~g~~l~s 419 (473)
++. ..++ . +|...|.+|.|.+++.++++
T Consensus 192 ~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 192 GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 775 5555 2 37788999999999999887
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.35 E-value=7.3e-11 Score=120.04 Aligned_cols=244 Identities=14% Similarity=0.130 Sum_probs=144.0
Q ss_pred cCCcccEEEEEECCCCCeEEEEe-----CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC-------
Q 011978 105 AGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG------- 172 (473)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~s-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg------- 172 (473)
.+|...+..++|||||++||.+. ...+|++||+.+++.+.... +......++|+ ||+.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 35677889999999999998542 33689999999987543211 11112467899 999999988774
Q ss_pred ------eEEEeeCCCCcccccc---CCC-cCCcEEEEEeceeccCCCCceEEE-ee---CCCcEEEEECCCCe-EEEEec
Q 011978 173 ------ELQCWDPQTGKPSGNP---LSG-HKKWITGISWEPVHLNAPCRRFVS-AS---KDGDARIWDVSLRK-CVICLS 237 (473)
Q Consensus 173 ------~i~iwd~~~~~~~~~~---~~~-~~~~v~~i~~~~~~~~~~~~~~~s-~s---~dg~i~iwd~~~~~-~~~~~~ 237 (473)
.|++|++.++...... ... |.....++.|+| ++++++. .+ ....+.++|+.++. ....+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 3999998876532111 223 444567777765 4555543 32 23578999987652 223333
Q ss_pred CccccEEEEEecC-CCe-EEEeecC---CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 238 GHTLAVTCVKWGG-DGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 238 ~h~~~v~~~~~~~-~~~-l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
.+....... |.+ ++. ++....+ +.|..+|+.++..
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--------------------------------------- 317 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--------------------------------------- 317 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------------------------
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------------------------
Confidence 333333332 222 222 2222222 3344444433211
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCC---cEEEEeC
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNG 389 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~---~v~lwd~ 389 (473)
.....+..|...+. .|++++++|+....++ .|++||+
T Consensus 318 --------------------------------------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 318 --------------------------------------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp --------------------------------------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred --------------------------------------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 00011222333333 7888888887766544 6899998
Q ss_pred CCCceEEEee-CCccCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCce
Q 011978 390 TTGKFVAVFR-GHVGPVYQISWSADSRLLLSGSKD----STLKVWDIRTQKL 436 (473)
Q Consensus 390 ~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~D----g~i~iwd~~~~~~ 436 (473)
..+. ...+. .+.+.+..+.++|++..|+....+ ++++.||+.+++.
T Consensus 358 ~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 358 EGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 7544 34433 344567888889988876655444 7899999977653
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=5.5e-10 Score=103.00 Aligned_cols=268 Identities=14% Similarity=0.097 Sum_probs=169.9
Q ss_pred EEECCCCCeEEEEec-----CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCC
Q 011978 156 IAWSADGKHLVSGSK-----AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDG 220 (473)
Q Consensus 156 l~~s~dg~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg 220 (473)
....|+++.++.... ++.|.+.|..+++.......+.. + .+.++| +++++..++ .++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P--~va~sp-----DG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P--NPVVAD-----DGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECT-----TSSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C--cEEECC-----CCCEEEEEcccccccccCCCCC
Confidence 344689998888765 68999999999886654433322 2 366655 556665554 367
Q ss_pred cEEEEECCCCeEEEEecCc-------cccEEEEEecCCCe-EEEee--cCCeEEEEECCCCceeeeeeccCceEEEEEec
Q 011978 221 DARIWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (473)
Q Consensus 221 ~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 290 (473)
.|.+||..+.+.+..+.-. ......+.+++||. ++.+. .++.|.++|..+++.+.++...+.. .+.
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~----~~~ 185 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----HIF 185 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc----eee
Confidence 8999999999887765311 11234578899984 56554 3689999999999988877543310 001
Q ss_pred ccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcc----cc-eeE
Q 011978 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----QL-VNH 365 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~-v~~ 365 (473)
|. ....+++.+.||++.+.+.............+. .. ...
T Consensus 186 P~-----------------------------------g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 186 PT-----------------------------------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EE-----------------------------------ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred cC-----------------------------------CCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence 10 122456667788888777654222211111110 11 122
Q ss_pred EEE-CCCCcEEEEEECCCcEEEEeCCCCc--eEEEee---------C-CccCEEEEEEecCCCEEEEEeC----------
Q 011978 366 VYF-SPDGQWVASASFDKSIKLWNGTTGK--FVAVFR---------G-HVGPVYQISWSADSRLLLSGSK---------- 422 (473)
Q Consensus 366 v~~-sp~g~~lasgs~d~~v~lwd~~~~~--~~~~~~---------~-h~~~v~~v~~sp~g~~l~s~s~---------- 422 (473)
.+| .++|+++. .+.+|.|++.|..++. .+..+. + ..+....++++|+++.|+....
T Consensus 231 ~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 231 PAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp CEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred ceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 355 46786554 5668999999987654 222221 0 1123335778999998877642
Q ss_pred CCcEEEEECCCCceeecccccCCCEEEEEEeeCCC-EEEE-EeCCCcEEecc
Q 011978 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVAS-GGKDRVLKLWM 472 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s-~~~D~~i~~w~ 472 (473)
.+.|.++|+.+++.+..+.-. ..++++.+++|++ +|++ ...++.|.+++
T Consensus 310 ~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 310 SRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp EEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 257999999999988877642 3678999999997 5655 45588888775
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=4.3e-09 Score=96.59 Aligned_cols=219 Identities=12% Similarity=0.098 Sum_probs=138.3
Q ss_pred EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeee
Q 011978 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 276 (473)
.+..|.|. ....+++...++.|..||..+++..... ....+.++.+++++.++.++.+ .|.+||..+++....
T Consensus 52 egp~~~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~~~--~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDPA----SGTAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEETT----TTEEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred cCCeEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEE--CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEE
Confidence 34555542 1335566667889999999887654322 2356889999999876666644 599999888765332
Q ss_pred eec----cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec------CCceEEEEeC
Q 011978 277 LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS------DDFTMFLWEP 346 (473)
Q Consensus 277 ~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~iwd~ 346 (473)
... ....++.+.++++..+ +++.. ..+.+..++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l------------------------------------~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGAL------------------------------------WIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCE------------------------------------EEEEEETTCCTTCEEEEEEE-
T ss_pred eeCCCCCCCCCCCCEEECCCCCE------------------------------------EEEeCCCcCCCCceEEEEEe-
Confidence 211 1234566666554322 12111 123444444
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CC-ce-----EEEeeCCccCEEEEEEecCCCEE
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG-KF-----VAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~-~~-----~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
. .. ...+..+....+.++|+|||+.|+.+ +.++.|.+||.. ++ +. ...+....+....++++++|++.
T Consensus 168 ~--g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 168 K--GK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp T--TE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred C--Cc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 1 11 11222223356789999999877555 456889999986 55 32 22333344567889999999988
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEe-eCCCEEEEEe
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG 463 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s-~d~~~l~s~~ 463 (473)
++...++.|.+||. .++....+..+...+.+++|+ +|++.|..++
T Consensus 245 va~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 245 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 77767788999998 566666666566679999998 8887765444
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=2.3e-09 Score=101.46 Aligned_cols=231 Identities=12% Similarity=0.114 Sum_probs=147.2
Q ss_pred cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCC--eEEEEECCCC
Q 011978 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC--TIKVWETTQG 271 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~--~i~~wd~~~~ 271 (473)
....++|.+ ++..+++...++.|+.||..++............ . ++|++++ .|+++..++ .|.+++...+
T Consensus 132 ~P~~la~d~-----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 132 YMWGIAAVG-----NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CEEEEEECS-----TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CceEEEEeC-----CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 456676654 4456677777789999999887766554443222 2 8888887 467776655 7888887665
Q ss_pred ceeeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCC
Q 011978 272 KLIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (473)
Q Consensus 272 ~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 347 (473)
.....+ .........+++++. ...|+.+..++.++.||..
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~------------------------------------~g~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDET------------------------------------EEWLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTT------------------------------------SSEEEEECTTCEEEEEETT
T ss_pred ceeEEeeeccchhcCCcEEEEEeCC------------------------------------CCeEEEEECCCcEEEEECC
Confidence 433322 101122223333221 1234445567889999876
Q ss_pred CCCCCeee---ecCcccce-e-EEEECCC-CcEEEEEECCCcEEEEeCCCCceEEEeeCC---------------ccCEE
Q 011978 348 VSKQPKTR---MTGHQQLV-N-HVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGH---------------VGPVY 406 (473)
Q Consensus 348 ~~~~~~~~---~~~~~~~v-~-~v~~sp~-g~~lasgs~d~~v~lwd~~~~~~~~~~~~h---------------~~~v~ 406 (473)
........ ..++...- . .++|+|+ +.++++-..++.|+.|+.... +..+.++ .....
T Consensus 249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 44311110 11222222 2 8999995 666666667889999987643 2333332 23578
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEECCCCceeeccccc---------------CCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 407 QISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGH---------------ADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 407 ~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h---------------~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
.++++|+|+++++-+ .++.|+.||+.+++.. ++.++ -.....++++++|..+++-..+++|+.
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 999999999877777 7889999998776543 33332 235789999999888888888888876
Q ss_pred c
Q 011978 471 W 471 (473)
Q Consensus 471 w 471 (473)
+
T Consensus 406 i 406 (409)
T 3hrp_A 406 Y 406 (409)
T ss_dssp E
T ss_pred E
Confidence 5
No 220
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.28 E-value=1.9e-10 Score=105.85 Aligned_cols=296 Identities=14% Similarity=0.081 Sum_probs=179.2
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
+.+..++. |..++.++.|..|| .+++.......+...+.++...++|. |..++.+ |..+|. +++..... ....
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~-~~~~ 97 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF-DTKK 97 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS-CC--
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE-ECCC
Confidence 34445554 56666788899999 77766544333334456777777764 5555544 888886 55543221 1111
Q ss_pred CcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCce
Q 011978 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273 (473)
Q Consensus 194 ~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 273 (473)
..... +.. ....+..++.++.+..+|.. ++.......+...+.++...+++.++.++.++.+..+|.. ++.
T Consensus 98 ~~~~~----~~~---~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 98 AIVSD----FTI---FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp ---CC----EEE---ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE
T ss_pred CcccC----ceE---ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE
Confidence 11111 111 13467778888999999988 7766655555445566666778888889999999999988 776
Q ss_pred eeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCe
Q 011978 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (473)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 353 (473)
...+......+.++... ....+..++ +.+..+| .... ..
T Consensus 169 ~~~~~~~~~~~~~~~~d-------------------------------------~~g~l~v~t--~~l~~~d-~~g~-~~ 207 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIG-------------------------------------KDGTIYFGS--DKVYAIN-PDGT-EK 207 (330)
T ss_dssp EEEEECSSCCCSCCEEC-------------------------------------TTCCEEEES--SSEEEEC-TTSC-EE
T ss_pred eEEEecCCCceeeeEEc-------------------------------------CCCEEEEEe--CEEEEEC-CCCc-EE
Confidence 65544322211111111 112345555 6777787 3222 22
Q ss_pred eeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 354 ~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.........+.++++.++|. |..++.++.+..+|. +++.+..+......+..+.+.+++ .|..++.+|.|..+|. +
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-T
T ss_pred EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-C
Confidence 22223335577888888876 445666778888874 566666655444444445555566 4566777888999996 5
Q ss_pred CceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 434 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 434 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
++...........+.++...++|+ |..++.+|.+++.
T Consensus 284 g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 284 GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 655544433344566677777775 5668888888764
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=6.8e-09 Score=95.26 Aligned_cols=225 Identities=13% Similarity=0.081 Sum_probs=139.1
Q ss_pred EEEEEECCCCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc-
Q 011978 111 VLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP- 188 (473)
Q Consensus 111 V~~~~~sp~~~~-lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~- 188 (473)
...++|+|++.. +++...++.|..||..++... .+. ....+.+++|+++|+++++. . ..|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 456789998655 455557889999999877532 222 34579999999999877654 3 45999999877643211
Q ss_pred CC-Cc-CCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEE-Eee
Q 011978 189 LS-GH-KKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY-TGS 258 (473)
Q Consensus 189 ~~-~~-~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~-s~~ 258 (473)
.. +. ...++.+.+.| ++..+++... .+.|..+| +++... +..+......++|++++ .++ +.+
T Consensus 127 ~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp SSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET
T ss_pred CCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC
Confidence 11 11 23466676665 3344443322 13444445 444332 22223345678899887 344 445
Q ss_pred cCCeEEEEECC--CC-ceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEe
Q 011978 259 QDCTIKVWETT--QG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 259 ~d~~i~~wd~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
.++.|.+||+. +| .... . ..+.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~------~-----------------------------------------------~~~~-- 223 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGK------A-----------------------------------------------EVFI-- 223 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSC------C-----------------------------------------------EEEE--
T ss_pred CCCEEEEEEcccccCCcccC------c-----------------------------------------------eEEE--
Confidence 56788888864 33 2100 0 0000
Q ss_pred cCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEe-cCC
Q 011978 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS-ADS 414 (473)
Q Consensus 336 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~g 414 (473)
+ +......+..++++++|.+.++...++.|..||. +++.+..+..+...+.+++|+ |++
T Consensus 224 ---------~----------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 224 ---------D----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA 283 (326)
T ss_dssp ---------E----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred ---------E----------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence 0 0001123457889999998887777788999998 677777777777779999998 888
Q ss_pred CEEEEEeC
Q 011978 415 RLLLSGSK 422 (473)
Q Consensus 415 ~~l~s~s~ 422 (473)
+.|+.++.
T Consensus 284 ~~L~vt~~ 291 (326)
T 2ghs_A 284 SRLLVTSA 291 (326)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEec
Confidence 77655443
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=1.7e-09 Score=110.05 Aligned_cols=234 Identities=11% Similarity=0.092 Sum_probs=138.9
Q ss_pred CCCCCEEEEEECCCCCeEEEEe-----cCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCC--
Q 011978 148 GHKNWVLCIAWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-- 220 (473)
Q Consensus 148 ~~~~~v~~l~~s~dg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg-- 220 (473)
+|...+..++|||||++|+.+. ....|++||+.+++..... +..+.+...... ++..|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-------~~~~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-------LKDVKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-------EEEEESCCCEEE-TTTEEEEEESSCCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-------cCCceeccEEEe-CCCEEEEEEecCcc
Confidence 3556788899999999988432 2357999999998743221 222211122233 456677776663
Q ss_pred -----------cEEEEECCCCe----EEEEecC-ccccEEEEEecCCCe-E-EEee---cCCeEEEEECCCCc-eeeeee
Q 011978 221 -----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDGV-I-YTGS---QDCTIKVWETTQGK-LIRELK 278 (473)
Q Consensus 221 -----------~i~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~-l-~s~~---~d~~i~~wd~~~~~-~~~~~~ 278 (473)
.|++|++.+.. ++..... |......+.|++||. | ++.+ .++.|+++|+.++. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-- 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-- 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE--
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE--
Confidence 38999987653 3443334 455577888998884 3 3333 22467777765442 1111
Q ss_pred ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC
Q 011978 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (473)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 358 (473)
+..
T Consensus 276 -----------------------------------------------------------------------------l~~ 278 (693)
T 3iuj_A 276 -----------------------------------------------------------------------------VQG 278 (693)
T ss_dssp -----------------------------------------------------------------------------EEC
T ss_pred -----------------------------------------------------------------------------EeC
Confidence 111
Q ss_pred cccceeEEEECCCCcEEEEEE-CC---CcEEEEeCCCCce--EEEeeCCccCEEEEEEecCCCEEEEEeCCC---cEEEE
Q 011978 359 HQQLVNHVYFSPDGQWVASAS-FD---KSIKLWNGTTGKF--VAVFRGHVGPVYQISWSADSRLLLSGSKDS---TLKVW 429 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs-~d---~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg---~i~iw 429 (473)
+....... ++++|..|+..+ .+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|++|
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 11122222 445555444433 33 5788999887654 344555665554 8999999887776544 68999
Q ss_pred ECCCCceeeccc-ccCCCEEEEEEeeCCCEEEEEeCC----CcEEecc
Q 011978 430 DIRTQKLKQDLP-GHADEVFAVDWSPDGEKVASGGKD----RVLKLWM 472 (473)
Q Consensus 430 d~~~~~~~~~~~-~h~~~i~~l~~s~d~~~l~s~~~D----~~i~~w~ 472 (473)
|+..+.. ..+. .+...+..+.+++|++.|+....+ +++..|+
T Consensus 356 d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 356 DYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred ECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 9886543 3332 234457778888888877655443 5565553
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=1.1e-09 Score=101.16 Aligned_cols=267 Identities=10% Similarity=-0.001 Sum_probs=160.3
Q ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe----------cCCeEEEeeCCCCccccccCCC-cC-----C
Q 011978 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-HK-----K 194 (473)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-~~-----~ 194 (473)
+|.+.|..+.+.+..+.....+ .+.++|||++++.+. .++.|.+||+.+++.......+ .. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999888777644455 799999999999886 3688999999998765432111 00 1
Q ss_pred cEEEEEeceeccCCCCceEEEeeC--CCcEEE--EECCCCeEEEEec-CccccEEEEEecCCCeEEEeecCCeEEEEECC
Q 011978 195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s~--dg~i~i--wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~ 269 (473)
....+.++ +++++++.+.. +..+.+ +|..+ +..+. +.... +...++..+++.+.|+.+.+.|+.
T Consensus 125 ~P~~ia~S-----pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~---~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 125 RVHIIGNC-----ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CTTSEEEC-----TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECC
T ss_pred CcceEEEc-----CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceE---EccCCCeEEEEEcCCCCEEEEECc
Confidence 11223333 46677777654 456888 88876 22221 11100 111222345666778888888877
Q ss_pred C-----Cceeeee----eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCce
Q 011978 270 Q-----GKLIREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (473)
Q Consensus 270 ~-----~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 340 (473)
+ ++..... .....+. .. .....++..+. +.
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~~-------------------------------------~~~~~~~~vs~-~~ 232 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---QA-------------------------------------NYPGMLVWAVA-SS 232 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---EE-------------------------------------TTTTEEEECBS-SC
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---cc-------------------------------------ccCCEEEEEcC-CE
Confidence 6 3322110 0000000 00 01122333333 67
Q ss_pred EEEEeCCCCCCCe-eee---------cC-cccceeEEEECCCCcEEEEEEC---------CCcEEEEeCCCCceEEEeeC
Q 011978 341 MFLWEPAVSKQPK-TRM---------TG-HQQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRG 400 (473)
Q Consensus 341 i~iwd~~~~~~~~-~~~---------~~-~~~~v~~v~~sp~g~~lasgs~---------d~~v~lwd~~~~~~~~~~~~ 400 (473)
+.+.|........ ... .+ .......++|+||++.+..+.. ++.+.++|..+++.+..+..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 7777764321110 000 00 0111223789999988876533 23566999999998887764
Q ss_pred CccCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEe
Q 011978 401 HVGPVYQISWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 453 (473)
Q Consensus 401 h~~~v~~v~~sp~g~-~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s 453 (473)
.. ....++|+|||+ .+++.. .+++|.++|+.+++.+.+++.... -..+++.
T Consensus 313 g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 313 GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 43 578999999998 456666 599999999999999988875443 3355544
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=4.5e-09 Score=95.53 Aligned_cols=228 Identities=8% Similarity=0.025 Sum_probs=139.9
Q ss_pred CcccEEEEEECCCCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccc
Q 011978 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (473)
Q Consensus 107 h~~~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 185 (473)
.........|+|+|+ .+++...++.|..|+.... ...+..+...+..++++++|+++++...++.|.+|+.+ ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 334566789999998 4566667899999998433 23344456678999999999866665566889999975 4421
Q ss_pred ccc--CCCc-CCcEEEEEeceeccCCCCceEEE----eeC-------------CCcEEEEECCCCeEEEEecCccccEEE
Q 011978 186 GNP--LSGH-KKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHTLAVTC 245 (473)
Q Consensus 186 ~~~--~~~~-~~~v~~i~~~~~~~~~~~~~~~s----~s~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~ 245 (473)
... ..+. ...++.+.+.| ++..+++ |.. .+.|..+|..+++..... .......
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g 192 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG 192 (305)
T ss_dssp EEECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred EEEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence 110 0110 11233444443 4455554 321 245666776555543332 3345677
Q ss_pred EEecCCCe-EEEeecC------CeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 246 VKWGGDGV-IYTGSQD------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 246 ~~~~~~~~-l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
++|++++. |+.+... +.|.+|++..+. +....
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~---------------------------------------- 231 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR---------------------------------------- 231 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE----------------------------------------
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe----------------------------------------
Confidence 89999884 6666554 678888765432 11000
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.++ +. .......++++++|++.++. .+ .|.+||. .++.+..+
T Consensus 232 ------------~~~-----------~~------------~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 232 ------------HFA-----------SV------------PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp ------------EEE-----------CC------------SSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEE
T ss_pred ------------EEE-----------EC------------CCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEE
Confidence 000 00 01123457889999955544 44 4999998 57777777
Q ss_pred eCCccCEEEEEEecCCCEEEEEeCCC
Q 011978 399 RGHVGPVYQISWSADSRLLLSGSKDS 424 (473)
Q Consensus 399 ~~h~~~v~~v~~sp~g~~l~s~s~Dg 424 (473)
..+. .+.+++|+|+++.|..++.++
T Consensus 274 ~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 274 PTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred ECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 6555 588899999998888877664
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=113.54 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC-CcEE
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWIT 197 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~ 197 (473)
++..+++++.|+.|+.||..+++.+..+.. ..+.+..+..++..+++++.||.|+.||.++|+..... ..+. ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc-
Confidence 578899999999999999999998887765 45555556677878888889999999999888753221 1110 000
Q ss_pred EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEec-CCCeEEEeecCCeEEEEECCCCceeee
Q 011978 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRE 276 (473)
Q Consensus 198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 276 (473)
...|.. .....+++++.++.+..||..+++.+..+..+.. ..+. .++.+++++.|+.|+.||..+|+.+..
T Consensus 84 --~~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 84 --QASPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp --TTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred --ccCceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 001110 0234567788888899999988887766654431 1122 244677888888888888888876554
Q ss_pred e
Q 011978 277 L 277 (473)
Q Consensus 277 ~ 277 (473)
+
T Consensus 156 ~ 156 (369)
T 2hz6_A 156 A 156 (369)
T ss_dssp E
T ss_pred E
Confidence 3
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=2.7e-09 Score=97.03 Aligned_cols=250 Identities=15% Similarity=0.144 Sum_probs=139.2
Q ss_pred EEcCCCCCEEEEEECCCCC-eEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978 145 KCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 145 ~~~~~~~~v~~l~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~ 223 (473)
.+...........|+|+|+ .+++...++.|..|+. +++.. .+..+...+.++.+.+ ++..+++...++.|.
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--~~~~~~~~~~gl~~d~-----dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--VLLDATAFTNGNAVDA-----QQRLVHCEHGRRAIT 110 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--EEEESCSCEEEEEECT-----TSCEEEEETTTTEEE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--EEeCCCCccceeeECC-----CCCEEEEECCCCEEE
Confidence 3444556678899999998 5566667899999998 44422 2223445577777665 344444434457899
Q ss_pred EEECCCCeEEEEec---Cc-cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 224 IWDVSLRKCVICLS---GH-TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 224 iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.||.. ++...... +. ...+..+.++++|.++.. |..-|... ...+..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t---------d~~~g~~~-~~~~~~------------------ 161 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT---------DPPFGLRK-PSQGCP------------------ 161 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE---------CCSGGGSC-GGGSCC------------------
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe---------CcCCCccc-cccccc------------------
Confidence 99876 44322111 11 122445666666544331 11000000 000000
Q ss_pred ccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE
Q 011978 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs 379 (473)
.......+.|+.+|...... ..+. .....+.++|+||++.|+.+.
T Consensus 162 --------------------------------~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 162 --------------------------------ADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp --------------------------------CCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred --------------------------------cccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEe
Confidence 00000012233333321111 1111 223457899999999887776
Q ss_pred CC------CcEEEEeCCCCceE--EEe-eCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCCEEEE
Q 011978 380 FD------KSIKLWNGTTGKFV--AVF-RGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV 450 (473)
Q Consensus 380 ~d------~~v~lwd~~~~~~~--~~~-~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l 450 (473)
.. +.|++|++..+... ..+ ....+....++++++|++.++. .+| |.+||.. ++.+..+..+. .+..+
T Consensus 207 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~-g~~~~~~~~~~-~~~~~ 282 (305)
T 3dr2_A 207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSD-GQLLGHIPTPG-TASNC 282 (305)
T ss_dssp CCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEEECTT-SCEEEEEECSS-CCCEE
T ss_pred cCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEEECCC-CCEEEEEECCC-ceeEE
Confidence 65 68999998755411 111 1123345678899999955544 454 9999984 55555555443 57889
Q ss_pred EEeeCCCEEEEEeCCCcEEe
Q 011978 451 DWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 451 ~~s~d~~~l~s~~~D~~i~~ 470 (473)
+|+|+++.|..++.++..++
T Consensus 283 ~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 283 TFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECTTSCEEEEEETTEEEEE
T ss_pred EEeCCCCEEEEEcCCeEEEE
Confidence 99999998888887766555
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.20 E-value=2.4e-09 Score=100.62 Aligned_cols=264 Identities=14% Similarity=0.044 Sum_probs=166.3
Q ss_pred CCCCeEEEEecC-----CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEee----------CCCcEEE
Q 011978 160 ADGKHLVSGSKA-----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDARI 224 (473)
Q Consensus 160 ~dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s----------~dg~i~i 224 (473)
++++.++..... +.|.++|..+++.......+. .+ .+.++| +++++..+. .++.|.+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~Vsv 153 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE-----DGSFFAQASTVFERIARGKRTDYVEV 153 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT-----TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC-----CCCEEEEEeccccccccCCCCCEEEE
Confidence 466766665442 699999999988765443332 22 666665 555565554 4678999
Q ss_pred EECCCCeEEEEec-C-c-----cccEEEEEecCCC-eEEEeec--CCeEEEEECCCCceeeeeeccCceEEEEEecccce
Q 011978 225 WDVSLRKCVICLS-G-H-----TLAVTCVKWGGDG-VIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (473)
Q Consensus 225 wd~~~~~~~~~~~-~-h-----~~~v~~~~~~~~~-~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 294 (473)
+|..+++.+..+. + . ......+.+++|| .++.+.. +++|.+.|..+++.+.++...+. ....+.
T Consensus 154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~-- 227 (426)
T 3c75_H 154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA-- 227 (426)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE--
T ss_pred EECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC--
Confidence 9999998876653 1 0 1123356788988 4666553 68999999999998877654321 111111
Q ss_pred eeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeee----e-cCcccceeEEEEC
Q 011978 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----M-TGHQQLVNHVYFS 369 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~-~~~~~~v~~v~~s 369 (473)
....+++.+.|+++.+.+.... ..... + .+.......+.|+
T Consensus 228 ---------------------------------g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 228 ---------------------------------SPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp ---------------------------------ETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEEC
T ss_pred ---------------------------------CCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeec
Confidence 0123445556676666665222 11110 0 0111112235789
Q ss_pred CCCcEEEEEECCCcEEEEeCCCCceEE--EeeC----------CccCEEEEEEecCCCEEEEEeC----------CCcEE
Q 011978 370 PDGQWVASASFDKSIKLWNGTTGKFVA--VFRG----------HVGPVYQISWSADSRLLLSGSK----------DSTLK 427 (473)
Q Consensus 370 p~g~~lasgs~d~~v~lwd~~~~~~~~--~~~~----------h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~ 427 (473)
+++..++..+..+.|.+.|........ .+.- .......++++||++.+++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 998888877888999999986554221 1110 0011123689999987776542 35799
Q ss_pred EEECCCCceeecccccCCCEEEEEEeeCCC-EEEEEe-CCCcEEecc
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM 472 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~~-~D~~i~~w~ 472 (473)
++|..+.+.+.++... ....++.|+|||+ +++++. .++.|.+++
T Consensus 354 VID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 354 VLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred EEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 9999999998887643 2478999999999 888877 588888875
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=7.8e-09 Score=96.96 Aligned_cols=262 Identities=12% Similarity=0.054 Sum_probs=159.9
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEE
Q 011978 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (473)
Q Consensus 119 ~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 198 (473)
++..++.++.++.|..+|..+++.+............... .+..++.++.++.|..+|..+|+........ ..+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence 4567888889999999999999887665433221111122 2457888889999999999998754322111 00100
Q ss_pred E--EeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCcccc----------EEEEEecCCCeEEEeecCCeEEEE
Q 011978 199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----------VTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 199 i--~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
. ...|.. ....++.++.++.+..+|..+++.+......... +.......++.++.++.++.+..+
T Consensus 178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 0 001111 1346777888999999999999887655422100 100001125678888899999999
Q ss_pred ECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeC
Q 011978 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 346 (473)
|..+|+.+....... ...+... .+.++.++.++.+..+|.
T Consensus 255 d~~tG~~~w~~~~~~--~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 255 DLRSGQIMWKRELGS--VNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp ETTTCCEEEEECCCC--EEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred ECCCCcEEeeccCCC--CCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence 999998776554221 1111111 235667777888888887
Q ss_pred CCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcE
Q 011978 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTL 426 (473)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i 426 (473)
...+............+....+ .+..|+.++.+|.+..+|..+|+.+..++.....+...... .+..|+.++.||.|
T Consensus 295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTV 371 (376)
T ss_dssp TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCE
T ss_pred CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEE
Confidence 6554322221111112222222 35678888999999999999999887776533333221111 24577788899999
Q ss_pred EEEE
Q 011978 427 KVWD 430 (473)
Q Consensus 427 ~iwd 430 (473)
+.||
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=5.4e-09 Score=105.44 Aligned_cols=295 Identities=14% Similarity=0.126 Sum_probs=165.0
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCC---------cE-EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---------WI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v-~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
+..|+.++.++.|+.+|..+|+........... .+ ..+. ....+++.++.|+.+..+|..+++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-------LWKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-------EETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-------EECCEEEEEcCCCEEEEEECCCCC
Confidence 456777778889999999888765322111000 00 0011 123577888899999999999999
Q ss_pred EEEEecCc-c----ccEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeecc
Q 011978 232 CVICLSGH-T----LAVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (473)
Q Consensus 232 ~~~~~~~h-~----~~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (473)
.+..+..+ . ..+.+ ... .++.++.++. ++.|+.+|..+|+.+..+.............+. ...+.
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~--~~~g~ 226 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES--MKRAA 226 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH--HHHHH
T ss_pred EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc--ccccc
Confidence 88777644 1 11211 111 2456666553 799999999999988776542211000000000 00000
Q ss_pred ccCCCcccCCHHHHHHHHHh--hhhccc-CCCCceEEEecCCc-------------------eEEEEeCCCCCCCeeeec
Q 011978 300 FDHTGKQYSSPEEMKKAALE--RYNKIK-GNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMT 357 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~ 357 (473)
..+............ .+.... ......++.+..++ .+..+|...++.......
T Consensus 227 -----~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 227 -----RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp -----TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred -----ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 000000000000000 000000 00122333333332 477777665543332222
Q ss_pred C-cc-------cceeEEEECCCC---cEEEEEECCCcEEEEeCCCCceEEEeeCCc----------c-CE----------
Q 011978 358 G-HQ-------QLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFVAVFRGHV----------G-PV---------- 405 (473)
Q Consensus 358 ~-~~-------~~v~~v~~sp~g---~~lasgs~d~~v~lwd~~~~~~~~~~~~h~----------~-~v---------- 405 (473)
. |. .....+....+| ..++.++.+|.++++|..+|+.+..++... + ++
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 1 21 112223334477 689999999999999999999876654211 0 11
Q ss_pred --------------EEEEEecCCCEEEEEeC-------------------------------------------CCcEEE
Q 011978 406 --------------YQISWSADSRLLLSGSK-------------------------------------------DSTLKV 428 (473)
Q Consensus 406 --------------~~v~~sp~g~~l~s~s~-------------------------------------------Dg~i~i 428 (473)
..++|+|++.++++... .|.|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 14688999888877543 278999
Q ss_pred EECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 429 WDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 429 wd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
||+.+++.+-..+ +...+....++.++..++.++.|+.+++|+
T Consensus 462 ~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 462 WDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 9999998876654 333445556777888899999999999986
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=109.11 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=113.3
Q ss_pred CCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCC-eEEEeecCCeEEEEECCCCceeeeeeccCceEEEE
Q 011978 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (473)
Q Consensus 209 ~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 287 (473)
...++++++.|+.+..||..+++.+..+.. ..+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~--- 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL--- 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc---
Confidence 346788999999999999999999887765 334333334455 56777899999999998887765543221000
Q ss_pred EecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEE
Q 011978 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367 (473)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~ 367 (473)
.. ..... .....+++++.++.++.||...++..... ..+. ...
T Consensus 83 ------------------------------~~-~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~-~~~~----~~~ 125 (369)
T 2hz6_A 83 ------------------------------VQ-ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTL-SSAF----ADS 125 (369)
T ss_dssp ------------------------------HT-TCSCC------CCCCEEEEEEEEECCC--------------------
T ss_pred ------------------------------cc-cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEe-cCCC----ccc
Confidence 00 00000 01235677888999999998765543222 1111 245
Q ss_pred ECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCceeecccccC
Q 011978 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS---RLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 444 (473)
Q Consensus 368 ~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~ 444 (473)
++|++..+++++.|+.|+.||..+|+.+..+..+. .....++++. ..+++++.||.|+.||..+++.+-...- .
T Consensus 126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~ 202 (369)
T 2hz6_A 126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-A 202 (369)
T ss_dssp -------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-S
T ss_pred ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-C
Confidence 67788999999999999999999998765543221 1223333332 5677788999999999999887655442 3
Q ss_pred CCEEE-EEEeeCCC
Q 011978 445 DEVFA-VDWSPDGE 457 (473)
Q Consensus 445 ~~i~~-l~~s~d~~ 457 (473)
.++.. ..+++||.
T Consensus 203 ~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 203 SPVVAFYVWQREGL 216 (369)
T ss_dssp SCEEEEEECTTSSC
T ss_pred CceEEEEEecCCce
Confidence 34433 34455654
No 231
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=1.7e-08 Score=101.74 Aligned_cols=314 Identities=13% Similarity=0.124 Sum_probs=178.1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----------E-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 120 ~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~----------v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
+..|+.++.++.|.-+|..+++.+......... + ..+++ ++..++.++.|+.|..+|..+|+.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 566777888999999999999988776432210 0 11222 3567888899999999999999865432
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecC---ccc------------------
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSG---HTL------------------ 241 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~---h~~------------------ 241 (473)
..........+...|.. ....++.+.. ++.|..+|..+++.+..+.. ...
T Consensus 144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 11110000000011111 1234444433 58999999999998876632 100
Q ss_pred ----------cEEEEEecCC-CeEEEeecCC-------------------eEEEEECCCCceeeeeeccCceEEEEEecc
Q 011978 242 ----------AVTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALST 291 (473)
Q Consensus 242 ----------~v~~~~~~~~-~~l~s~~~d~-------------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 291 (473)
....++++++ +.++.+..++ .|.-+|..+|+.+..++...+.........
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 0012456553 5677776665 488999999998877654211100000000
Q ss_pred cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc------------
Q 011978 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH------------ 359 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------ 359 (473)
...+.... ..+.....++.++.++.++++|...++.........
T Consensus 301 ~~~~~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 301 QITLAELN------------------------IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp CEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CcEEEEec------------------------cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 00000000 000011247778888888888876554221000000
Q ss_pred ------------c-----------cceeEEEECCCCcEEEEEE------------------------------------C
Q 011978 360 ------------Q-----------QLVNHVYFSPDGQWVASAS------------------------------------F 380 (473)
Q Consensus 360 ------------~-----------~~v~~v~~sp~g~~lasgs------------------------------------~ 380 (473)
. ..-..++++|+..++.... .
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 0 0011267888766655421 2
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCC-E
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGE-K 458 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~-~ 458 (473)
+|.|..||..+|+.+-.++.+. +.....+...+.+++.++.||.++.||.++++.+..+.....- -.-+.+..+|+ +
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 3789999999999876665432 3333445567788899999999999999999887655433211 12234566777 4
Q ss_pred EEEEe
Q 011978 459 VASGG 463 (473)
Q Consensus 459 l~s~~ 463 (473)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44433
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.08 E-value=2.7e-06 Score=88.02 Aligned_cols=307 Identities=11% Similarity=0.109 Sum_probs=189.6
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
|.++...+++...+ ++.++.+..||..+++.... ...+...|.++...++|. |..|+.++-+..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88888888886555 55555688899876543211 112345688888877775 5555555558899987764322111
Q ss_pred C------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEecCCCeEEE
Q 011978 190 S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYT 256 (473)
Q Consensus 190 ~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~s 256 (473)
. -....|.++...+ ...+..|+.+ -+.+||..++........ ....|.++..+.+|.|..
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi 325 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDS------QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL 325 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECT------TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred CCCCccccCCCeEEEEEEcC------CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence 1 1134566665432 2345556655 588899887765543221 235699999999999999
Q ss_pred eecCCeEEEEECCCCceeeeeec------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 257 GSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 257 ~~~d~~i~~wd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
|+.++-|..|+..++........ ....|.++.... ..
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-------------------------------------~g 368 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-------------------------------------DK 368 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-------------------------------------TS
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-------------------------------------CC
Confidence 99989999998765543221110 122244443222 23
Q ss_pred eEEEecCCceEEEEeCCCCCCCeeee-------cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee----
Q 011978 331 RLVSGSDDFTMFLWEPAVSKQPKTRM-------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---- 399 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~---- 399 (473)
.+..|+.++-+..|+........... .-....|.+++..++|+.|..|+.++-|..||..+++......
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 46677777778888865332111110 0123568999999999866667777779999998876543321
Q ss_pred CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc------ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 400 GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 400 ~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
.....|.++...++|++.+... + -+.+||..+++...... -....|.++...++|+..+... +|
T Consensus 449 l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred cCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 1345799999888888665543 4 48999988765432211 1235789998888887665544 44
No 233
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.06 E-value=1.2e-06 Score=90.64 Aligned_cols=307 Identities=10% Similarity=0.092 Sum_probs=186.2
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCC-EEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~-~~~-v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
|.++...++|...+.. . +.+..||..+++........ ... |.++...++|. |..++.++.|..|+..+++.....
T Consensus 133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEec
Confidence 8888888888765543 3 55888998765321100000 113 88888887775 445666656889998776533221
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEecCCCeEEEeecCC
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC 261 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~s~~~d~ 261 (473)
.......|.++...+ . ..+..++.++-+..||..+++....... ....|.++...++|.+..|+.+
T Consensus 210 ~~~~~~~i~~i~~d~-----~-g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~- 282 (795)
T 4a2l_A 210 PILGTKQIQAILQQS-----P-TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN- 282 (795)
T ss_dssp ----CCCEEEEEEEE-----T-TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred CCCCCCeeEEEEEcC-----C-CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence 112234566655332 1 3455566555688999887765443222 1356899999888988888866
Q ss_pred eEEEEECCCCceeeeeec-------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 262 ~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
.|.+||..+++....... ....|.++.... ...+..
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-------------------------------------~g~lWi 325 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-------------------------------------QGGMWL 325 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-------------------------------------TSCEEE
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-------------------------------------CcCEEE
Confidence 688899877654332111 112344443322 234666
Q ss_pred ecCCceEEEEeCCCCCCCeeee-----cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeC--------C
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--------H 401 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~--------h 401 (473)
|+.++-+..++........... .-....|.+++..++|.+. .|+.++-|..||..+++....... .
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 7777777777753321111000 0123468999999988754 467777799999887765433211 2
Q ss_pred ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc----ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 402 VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 402 ~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
...|.++...++|+.|-.|+.++-|..||..+++...-.. .....|.++...++|+..+... +|
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G 472 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA 472 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc
Confidence 3579999998898845567777779999998765432211 1245789998888887555443 44
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=3.8e-08 Score=99.51 Aligned_cols=300 Identities=12% Similarity=0.058 Sum_probs=161.9
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcE---EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI---TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~ 238 (473)
+..|+.++.++.|+.+|..+|+..-.......... .+.............+++.++.|+.+.-+|..+++.+..+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 55778888889999999998886543211100000 000000000001235778888999999999999998876543
Q ss_pred c--c---ccEEE-EEecCCCeEEEee------cCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCc
Q 011978 239 H--T---LAVTC-VKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 239 h--~---~~v~~-~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
. . ..+.+ ..+ .++.++.+. .++.|+.||..+|+.+..+.... .+.. .+... .+........+.
T Consensus 150 ~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~--~~~~~-~~~~~~~~~~g~ 225 (689)
T 1yiq_A 150 RADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL--PPEGK-GMEIAAKTWFGD 225 (689)
T ss_dssp CSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS--CCCSH-HHHHHHTTCCSS
T ss_pred cCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc--ccccc-cccccccccCCc
Confidence 2 1 11111 011 156666554 37899999999999887664210 0000 00000 000000000000
Q ss_pred ccCCHHHHHHHHHh---hhhcc-cCCCCceEEEecCCc-------------------eEEEEeCCCCCCCeeeecC-cc-
Q 011978 306 QYSSPEEMKKAALE---RYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMTG-HQ- 360 (473)
Q Consensus 306 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~~~~~-~~- 360 (473)
.+ ..... .+... .......++.++.++ .+..+|...++........ |.
T Consensus 226 ~w-------~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 226 AY-------VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp TH-------HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred ee-------eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 00 00000 00000 000123444554443 3788887765543322221 21
Q ss_pred ------cceeEEEECCCCc---EEEEEECCCcEEEEeCCCCceEEEeeCCc-cC--------------------------
Q 011978 361 ------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-GP-------------------------- 404 (473)
Q Consensus 361 ------~~v~~v~~sp~g~---~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~-------------------------- 404 (473)
..........+|+ .++.++.+|.++++|..+|+++...+... ..
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1111122223565 78999999999999999999874332110 00
Q ss_pred ------------EEEEEEecCCCEEEEEeC---------------------------------------------CCcEE
Q 011978 405 ------------VYQISWSADSRLLLSGSK---------------------------------------------DSTLK 427 (473)
Q Consensus 405 ------------v~~v~~sp~g~~l~s~s~---------------------------------------------Dg~i~ 427 (473)
-..++|+|+..++++.+. +|.|+
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 012688898887776532 37799
Q ss_pred EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEeccC
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 473 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~~ 473 (473)
.||+.+++.+-..+.+. .+..-.++..+..++.++.|+.++.|++
T Consensus 459 A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 459 AWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp EEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred EEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 99999998876665443 3334456778889999999999999863
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=2.9e-08 Score=91.05 Aligned_cols=265 Identities=14% Similarity=0.058 Sum_probs=154.4
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~ 188 (473)
..+.++...++|... .++.+ +..+|. ++..+..............+. +..|..++.++.|..+|.. ++.....
T Consensus 60 ~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 345677777777644 34444 888886 444332222222212222232 4568888889999999987 5543211
Q ss_pred CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEEC
Q 011978 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (473)
Q Consensus 189 ~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~ 268 (473)
......+..+.. .....+..++.++.+..+|.. ++....+......+.++...+++.++.++ +.+..+|
T Consensus 133 -~~~~~~~~~~~~------~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d- 201 (330)
T 3hxj_A 133 -KTKKAIYATPIV------SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN- 201 (330)
T ss_dssp -ECSSCCCSCCEE------CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-
T ss_pred -cCCCceeeeeEE------cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-
Confidence 111111111111 113457778888999999998 77666555444556667777778777777 8899999
Q ss_pred CCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCC
Q 011978 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 348 (473)
.+++...........+.++... ....+..++.++.+..++...
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~-------------------------------------~~g~l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAIS-------------------------------------EDGTIYVTSLDGHLYAINPDG 244 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEEC-------------------------------------TTSCEEEEETTTEEEEECTTS
T ss_pred CCCcEEEEEccCCcceeceEEC-------------------------------------CCCeEEEEcCCCeEEEECCCC
Confidence 7776655443322222222111 122466677777777776422
Q ss_pred CCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEE
Q 011978 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKV 428 (473)
Q Consensus 349 ~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~i 428 (473)
. ...........+.++.+.+++. |..++.++.|..+|. +++.+..+......+.++...++|++ ..++.+|.+++
T Consensus 245 -~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~ 319 (330)
T 3hxj_A 245 -T-EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYA 319 (330)
T ss_dssp -C-EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEE
T ss_pred -C-EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEE
Confidence 1 1222222223344556666665 666778888999996 67777666655556677777777764 55788999998
Q ss_pred EECCC
Q 011978 429 WDIRT 433 (473)
Q Consensus 429 wd~~~ 433 (473)
.....
T Consensus 320 ~~~~~ 324 (330)
T 3hxj_A 320 LFNLE 324 (330)
T ss_dssp EEC--
T ss_pred Eeccc
Confidence 87654
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.90 E-value=7.7e-08 Score=88.88 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=116.6
Q ss_pred cEEEEEeceeccCCCCceEEEee--CCCcEEEEECCCCeEEEEe-------cCccccEEEEEecCCCeEEEeec------
Q 011978 195 WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDGVIYTGSQ------ 259 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~l~s~~~------ 259 (473)
...++++.| +++.|++.. .++.++||.+..++.. .+ .+|...+..+++++++.|+....
T Consensus 18 ~p~~va~~~-----~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 18 APGNITLTP-----DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS 91 (343)
T ss_dssp CEEEEEECT-----TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred CcceEEECC-----CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence 455555544 445666643 2343455554444432 22 23556789999999887666543
Q ss_pred CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCc
Q 011978 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 339 (473)
++.|.+||+.+++.++.+.....
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~--------------------------------------------------------- 114 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPP--------------------------------------------------------- 114 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTT---------------------------------------------------------
T ss_pred CCeEEEEECCCCeEEEEEECChh---------------------------------------------------------
Confidence 57899999988876554321100
Q ss_pred eEEEEeCCCCCCCeeeecCcccceeEEEECCCC-cEEEEEE---CCCcEEEEeCCCCceEEEeeCCc-------------
Q 011978 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS---FDKSIKLWNGTTGKFVAVFRGHV------------- 402 (473)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~lasgs---~d~~v~lwd~~~~~~~~~~~~h~------------- 402 (473)
. ..+...+..++++|++ ...++.+ .++.|.+||..+++....+.+|.
T Consensus 115 ----------~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g 178 (343)
T 2qe8_A 115 ----------I------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG 178 (343)
T ss_dssp ----------T------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT
T ss_pred ----------h------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC
Confidence 0 0011224556777643 3334433 45677777777666555443321
Q ss_pred ----------------cCEEEEEEecCCCEEEEEeCCC-cEEEEECC---CCc-----eeec--ccccCCCEEEEEEeeC
Q 011978 403 ----------------GPVYQISWSADSRLLLSGSKDS-TLKVWDIR---TQK-----LKQD--LPGHADEVFAVDWSPD 455 (473)
Q Consensus 403 ----------------~~v~~v~~sp~g~~l~s~s~Dg-~i~iwd~~---~~~-----~~~~--~~~h~~~i~~l~~s~d 455 (473)
..++.++|+|||+.|+.+..++ .++.++.. .+. .... ..++......++++++
T Consensus 179 ~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~ 258 (343)
T 2qe8_A 179 VPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD 258 (343)
T ss_dssp EECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred EEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence 2368899999999998888776 44444421 110 0011 1123334557899999
Q ss_pred CCEEEEEeCCCcEEecc
Q 011978 456 GEKVASGGKDRVLKLWM 472 (473)
Q Consensus 456 ~~~l~s~~~D~~i~~w~ 472 (473)
|+.+++...++.|.+|+
T Consensus 259 G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 259 HNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CCEEEEEGGGTEEEEEE
T ss_pred CCEEEEccCCCeEEEEE
Confidence 99999988899999885
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.89 E-value=1.3e-07 Score=87.25 Aligned_cols=244 Identities=11% Similarity=0.019 Sum_probs=142.3
Q ss_pred EEEECCCCCeEEEEe----------CCCeEEEEeCCCCceeEEEcCC-------CCCEEEEEECCCCCeEEEEec--CCe
Q 011978 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE 173 (473)
Q Consensus 113 ~~~~sp~~~~lat~s----------~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~dg~~l~s~~~--dg~ 173 (473)
.++|+|||++++.+. .+++|.+||..+.+.+..+..+ ...-..++|+|||++|+.+.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999998886 3789999999999887776422 122457899999999998875 467
Q ss_pred EEE--eeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC-----CeEEEE----ecCcccc
Q 011978 174 LQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC----LSGHTLA 242 (473)
Q Consensus 174 i~i--wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~-----~~~~~~----~~~h~~~ 242 (473)
+.+ +|..+-+ .....+. ....|. ....+++.+.|+.+.+.|+.+ ++.... +.-...+
T Consensus 149 v~V~~iD~~tv~--~i~v~~~------~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 149 AGLSVPGASDDQ--LTKSASC------FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp EEEEETTTEEEE--EEECSSC------CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred EEEEEEchhhce--EEECCCc------eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 888 9986611 1111110 001121 123566777888888888876 432211 0001112
Q ss_pred EEEEEecCCCeEEEeecCCeEEEEECCCCc--eeeeeecc------CceE----EEEEecccceeeeccccCCCcccCCH
Q 011978 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGH------GHWV----NSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 243 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~------~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
. ....++.++..+. +.+.+.|...+. .+..+... ..+. ..++++++
T Consensus 217 ~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------------------ 274 (368)
T 1mda_H 217 A---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------------------ 274 (368)
T ss_dssp E---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------------------
T ss_pred c---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------------------
Confidence 2 2334455555555 889888886432 22211100 0000 00112211
Q ss_pred HHHHHHHHhhhhcccCCCCceEE-Eec---C-----CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc-EEEEEE-
Q 011978 311 EEMKKAALERYNKIKGNAPERLV-SGS---D-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS- 379 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~-~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~lasgs- 379 (473)
..+++ +.. . +..+.++|....+.......+. ....++|+|||+ ++++..
T Consensus 275 ------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 275 ------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp ------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEET
T ss_pred ------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccC
Confidence 12233 222 1 2345599987654333222222 578899999998 556666
Q ss_pred CCCcEEEEeCCCCceEEEeeCCccCEEEEEEe
Q 011978 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWS 411 (473)
Q Consensus 380 ~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s 411 (473)
.+++|.++|..+++.+..+..... ...+++.
T Consensus 335 ~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred CCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 589999999999999988875543 2344443
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=4.6e-05 Score=78.58 Aligned_cols=313 Identities=12% Similarity=0.073 Sum_probs=184.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
..|.++...++|.+.+.. .+ -+.+||..++....... -....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 468999999888765543 44 68889987654221110 1245699999988775 55666656788898876
Q ss_pred CccccccC-------------CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--------C-c
Q 011978 182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------G-H 239 (473)
Q Consensus 182 ~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--------~-h 239 (473)
+....... .-....|.++...+ ...+-.|+.++-|..++........... + .
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECS------SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 54221100 11234466654332 2345567767778888876554332210 1 2
Q ss_pred cccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeee---eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHH
Q 011978 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (473)
Q Consensus 240 ~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
...|.++...+++.|..|+.++-|..||..+++..... ......|.++....
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~------------------------- 416 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS------------------------- 416 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------------------------
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------------------------
Confidence 34688998888898999988888999997655432211 01122334433221
Q ss_pred HHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeee-cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE
Q 011978 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (473)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~ 395 (473)
...+..|+.++-+..++........... ......|.++...++|.+.+. +. +-+..+|..+++..
T Consensus 417 ------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 417 ------------EGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVI 482 (781)
T ss_dssp ------------TSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCC
T ss_pred ------------CCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEE
Confidence 2346667766677888764322111000 113456889999988875554 44 45888998877654
Q ss_pred EEeeCC-----ccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc--cc-cCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 396 AVFRGH-----VGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL--PG-HADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 396 ~~~~~h-----~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~-h~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
...... ...|.++...++|++.+.. .++-+..||..+++...-. .+ ....|.++...++|+..++.. +|.
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl 560 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL 560 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred ecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence 333222 3579999999988866544 4344888988766543211 11 235688998888887655443 555
Q ss_pred EEec
Q 011978 468 LKLW 471 (473)
Q Consensus 468 i~~w 471 (473)
+..|
T Consensus 561 v~~~ 564 (781)
T 3v9f_A 561 VCFP 564 (781)
T ss_dssp EEES
T ss_pred eEEE
Confidence 3444
No 239
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.81 E-value=1.6e-06 Score=85.55 Aligned_cols=313 Identities=14% Similarity=0.101 Sum_probs=170.3
Q ss_pred CCeEEEEeC-CCeEEEEeC-CCCceeEEEcCCCCC-----------EEEEEECCCCCe----EEEEecCCeEEEeeCCCC
Q 011978 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG 182 (473)
Q Consensus 120 ~~~lat~s~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~l~~s~dg~~----l~s~~~dg~i~iwd~~~~ 182 (473)
+..|+.++. ++.|.-+|. .+++.+.+....... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 889999999 899888766432210 122455444445 888899999999999999
Q ss_pred cccccc-CCCcCCcEEEEEeceeccCCCCceEEEee------CCCcEEEEECCCCeEEEEecCcccc-------------
Q 011978 183 KPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSGHTLA------------- 242 (473)
Q Consensus 183 ~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s------~dg~i~iwd~~~~~~~~~~~~h~~~------------- 242 (473)
+..... ...+... ..+.-.|.. ....++.++ .++.|.-+|..+++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~-~~~~ssP~v---~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVG-STLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGT-CBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCcc-ceeecCCEE---ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 865322 1111000 000111111 113455544 3799999999999988665422110
Q ss_pred ------------------------EE-EEEecC-CCeEEEeecC----------------CeEEEEECCCCceeeeeecc
Q 011978 243 ------------------------VT-CVKWGG-DGVIYTGSQD----------------CTIKVWETTQGKLIRELKGH 280 (473)
Q Consensus 243 ------------------------v~-~~~~~~-~~~l~s~~~d----------------~~i~~wd~~~~~~~~~~~~~ 280 (473)
+. ..++++ .+.++.+..+ +.|.-+|..+|+.+..++..
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 00 123333 3566666544 47888999999888766542
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH- 359 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~- 359 (473)
.+..........-.+ .+. ....+.....++.++.++.++..|....+.........
T Consensus 298 ~~d~wd~d~~~~p~l----~d~-------------------~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~ 354 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML----SEQ-------------------KDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (599)
T ss_dssp TTCSSCCCCCCCCEE----EEE-------------------ECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred CCccccccCCCccEE----Eec-------------------cccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence 211100000000000 000 00000001235667788888888865543221111000
Q ss_pred -----------cc--------------------------ceeEEEECCCCcEEEEEE-----------------------
Q 011978 360 -----------QQ--------------------------LVNHVYFSPDGQWVASAS----------------------- 379 (473)
Q Consensus 360 -----------~~--------------------------~v~~v~~sp~g~~lasgs----------------------- 379 (473)
.. .-..++|+|+..++.+..
T Consensus 355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence 00 012456777766655431
Q ss_pred ----------------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978 380 ----------------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 380 ----------------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h 443 (473)
.+|.|..||+.+|+.+-..+.. .+...-.....+.+++.++.||.++.||.++++.+-++.-.
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 3468899999999877665421 11111112335667778999999999999999987554322
Q ss_pred CC-CEEEEEEeeCCCEEE
Q 011978 444 AD-EVFAVDWSPDGEKVA 460 (473)
Q Consensus 444 ~~-~i~~l~~s~d~~~l~ 460 (473)
.. ...-+.|..||+.++
T Consensus 514 ~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 514 SGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp SCCCSCCEEEEETTEEEE
T ss_pred CCcEeccEEEEeCCEEEE
Confidence 21 112355677887443
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.81 E-value=4.3e-06 Score=77.82 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred CCCCeEEE-EeCCCeEEEEeCCCC----ceeEEEc-------CCCCCEEEEEECCCCCeEEEEecC------CeEEEeeC
Q 011978 118 PDGRQLAS-GSGDTTVRLWDLNTQ----TPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKA------GELQCWDP 179 (473)
Q Consensus 118 p~~~~lat-~s~d~~i~iwd~~~~----~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~d------g~i~iwd~ 179 (473)
+++++|+. +..++.|.|+|+.+. +...... .....-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 88888765 457889999999754 2222221 011134557788999 66665544 78999999
Q ss_pred CCCccccccCCC-cC-CcEEEEEeceeccCCCCceEEEee-------------------CCCcEEEEECCCCeEEEEecC
Q 011978 180 QTGKPSGNPLSG-HK-KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 180 ~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~~~~~~~~s~s-------------------~dg~i~iwd~~~~~~~~~~~~ 238 (473)
.+++.......+ .. ..-..+.|+| +.+.+++.. .+.+|.+||+.+++.+.++.-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 988765443222 11 1112244444 345666663 368999999999887766643
Q ss_pred c--cccEEEEEe--cCCCe-EE-Eee-----cCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCccc
Q 011978 239 H--TLAVTCVKW--GGDGV-IY-TGS-----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (473)
Q Consensus 239 h--~~~v~~~~~--~~~~~-l~-s~~-----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (473)
. ......+.| ++++. ++ ++. .+++|.+|....|+... +..+.+.... .
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--------~~vIdi~~~~------v------- 305 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA--------EKVIEIPAEP------L------- 305 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE--------EEEEEECCEE------C-------
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE--------EEEEeCCCcc------c-------
Confidence 2 123344555 88873 44 444 66788887654432210 0001110000 0
Q ss_pred CCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-CCcEEE
Q 011978 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKL 386 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d~~v~l 386 (473)
.+ .+ ...+ ..+.+-......|.+||||++|.++.. .+.|.+
T Consensus 306 ------------------------------~~-----~l--p~~~-~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav 347 (462)
T 2ece_A 306 ------------------------------EG-----NL--PEIL-KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ 347 (462)
T ss_dssp ------------------------------CS-----SC--CGGG-GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred ------------------------------cc-----cc--cccc-cccccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence 00 00 0000 000000123567899999999988765 578999
Q ss_pred EeCCC---CceEEEeeCC-----------c---cCEEEEEEecCCCEEEEEe
Q 011978 387 WNGTT---GKFVAVFRGH-----------V---GPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 387 wd~~~---~~~~~~~~~h-----------~---~~v~~v~~sp~g~~l~s~s 421 (473)
||+.. .+.+..+.-. . +.-..++++|||++|+++.
T Consensus 348 fdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 348 YDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99853 3444444321 0 1247799999999999887
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=8.8e-07 Score=87.38 Aligned_cols=311 Identities=14% Similarity=0.082 Sum_probs=170.6
Q ss_pred CCeEEEEeC-CCeEEEEeC-CCCceeEEEcCCCC----------CE-EEEEECCCCCeEEEEecCCeEEEeeCCCCcccc
Q 011978 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (473)
Q Consensus 120 ~~~lat~s~-d~~i~iwd~-~~~~~~~~~~~~~~----------~v-~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~ 186 (473)
+..++.++. ++.|.-+|. .+++.+........ .+ ..++. ++..++.++.|+.+..+|..+|+...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556666677 889999999 89988776542211 00 11222 35678888899999999999998653
Q ss_pred cc-CCCcCCcEEEEEeceeccCCCCceEEEeeC------CCcEEEEECCCCeEEEEecCcccc-----------------
Q 011978 187 NP-LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA----------------- 242 (473)
Q Consensus 187 ~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~------dg~i~iwd~~~~~~~~~~~~h~~~----------------- 242 (473)
.. ...+... ..+.-.|.. ....++.++. ++.|..+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 22 1111100 001111111 1234555544 789999999999988765421100
Q ss_pred --------------------E-EEEEecC-CCeEEEeec------------C----CeEEEEECCCCceeeeeeccCceE
Q 011978 243 --------------------V-TCVKWGG-DGVIYTGSQ------------D----CTIKVWETTQGKLIRELKGHGHWV 284 (473)
Q Consensus 243 --------------------v-~~~~~~~-~~~l~s~~~------------d----~~i~~wd~~~~~~~~~~~~~~~~v 284 (473)
+ ..+++++ .+.++.+.. | +.|..+|..+|+.+..++...+..
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~ 295 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc
Confidence 0 1133443 345655542 2 358889999998877664321100
Q ss_pred EEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-c---
Q 011978 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-Q--- 360 (473)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--- 360 (473)
........-.+..... .+.....++.++.++.++..|....+......... .
T Consensus 296 ~d~~~~~~p~l~~~~~------------------------~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 296 WDFAGVNQMVLTDQPV------------------------NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp SCCCCCCCCEEEEEEE------------------------TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccCCCCEEEeccc------------------------CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 0000000000000000 00000135567778888888765543221111110 0
Q ss_pred --------cc--------------------------eeEEEECCCCcEEEEEE---------------------------
Q 011978 361 --------QL--------------------------VNHVYFSPDGQWVASAS--------------------------- 379 (473)
Q Consensus 361 --------~~--------------------------v~~v~~sp~g~~lasgs--------------------------- 379 (473)
.. -..++|+|+..++....
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 00 02467888877776653
Q ss_pred ----------CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCC-CEE
Q 011978 380 ----------FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD-EVF 448 (473)
Q Consensus 380 ----------~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~-~i~ 448 (473)
.++.|..||..+++.+-.+... .++....+...+..++.++.||.++.||.++++.+.++..... .-.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 3478999999999987766532 2222223334566777799999999999999998765543221 112
Q ss_pred EEEEeeCCCEEEE
Q 011978 449 AVDWSPDGEKVAS 461 (473)
Q Consensus 449 ~l~~s~d~~~l~s 461 (473)
.+.+..+|+.++.
T Consensus 511 p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 511 PMTYSFKGKQYIG 523 (571)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEECCEEEEE
Confidence 2346678875543
No 242
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=5.7e-05 Score=77.91 Aligned_cols=310 Identities=13% Similarity=0.082 Sum_probs=181.7
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCC
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~ 181 (473)
..|.++...++|...+ |..++-+..||..+++...-.. -....|.++...++|...+ |+.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence 4688888887776554 5555568889987754321100 1135699999988886554 4444 688999876
Q ss_pred CccccccCC------CcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec--------------Cccc
Q 011978 182 GKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------------GHTL 241 (473)
Q Consensus 182 ~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~--------------~h~~ 241 (473)
++....... -....|.++...+ ...+-.|+..+-|.++|..++....... -...
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLK------DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECT------TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred CcEEEEEcCCCccccccCceEEEEEECC------CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence 643221111 1123455554322 2355566665678888887655332111 1235
Q ss_pred cEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeee---------ccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK---------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
.|.++..+.+|.|..|+.++-|..++..++....... .....|.++....
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--------------------- 372 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--------------------- 372 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT---------------------
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC---------------------
Confidence 6889998888999999988899999876654322110 0112344443322
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee--eecCcccceeEEEECCCCcEEEEEECCCcEEEEeCC
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~ 390 (473)
...+..|+.++-+..++......... ........|.+++..++|.+.+ |+.++-+..+|..
T Consensus 373 ----------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 373 ----------------QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp ----------------TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred ----------------CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 12466666666677777542210000 0012335688999988887655 6666678999988
Q ss_pred CCceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-----cCCCEEEEEEeeCCCEEEEEe
Q 011978 391 TGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-----HADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 391 ~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-----h~~~i~~l~~s~d~~~l~s~~ 463 (473)
+++...... .....|.++...++|++.+. +. +-+..||..+++....... ....|.++...++|+..+...
T Consensus 436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 436 LKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp SCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred CCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 776433221 13467999988888875554 44 4589999877654321111 135788998888887655544
Q ss_pred CCCc
Q 011978 464 KDRV 467 (473)
Q Consensus 464 ~D~~ 467 (473)
.+|.
T Consensus 514 ~~Gl 517 (781)
T 3v9f_A 514 GGGV 517 (781)
T ss_dssp SSCE
T ss_pred CCCE
Confidence 3453
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=2.9e-06 Score=83.85 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=52.8
Q ss_pred CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccccCCC-EEEEEEeeCCCEE
Q 011978 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKV 459 (473)
Q Consensus 381 d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~-i~~l~~s~d~~~l 459 (473)
+|.|..||+.+|+.+-...... ++..-.....+.+++.++.||.++.||.++++.+-++...... -.-+.|..||+.+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 5789999999999876654322 2221112234667888999999999999999987655432221 1235677888754
Q ss_pred EE
Q 011978 460 AS 461 (473)
Q Consensus 460 ~s 461 (473)
++
T Consensus 544 v~ 545 (582)
T 1flg_A 544 LG 545 (582)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.76 E-value=2.3e-06 Score=79.65 Aligned_cols=235 Identities=15% Similarity=0.158 Sum_probs=131.1
Q ss_pred ceEEEeeCCCcEEEEECCCC----eEEEEec--------CccccEEEEEecCCCeEEEeecC------CeEEEEECCCCc
Q 011978 211 RRFVSASKDGDARIWDVSLR----KCVICLS--------GHTLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGK 272 (473)
Q Consensus 211 ~~~~s~s~dg~i~iwd~~~~----~~~~~~~--------~h~~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~ 272 (473)
..++++..+..|.+.|+.+. +...++. +. ..-..+...++|.++++..+ +.+.+.|..+++
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 34566778899999998755 5555552 11 12334556788866665544 789999999999
Q ss_pred eeeeeeccCce---EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCC
Q 011978 273 LIRELKGHGHW---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (473)
Q Consensus 273 ~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 349 (473)
.+.++...... -..+.++++......+ .|..+.... .+...+.+.. ..+.+|.+||....
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS------~wg~p~~~~----------~g~~~~~~~~-~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSS------EWAVPNTIE----------DGLKLEHLKD-RYGNRIHFWDLRKR 238 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEEC------BCCCHHHHT----------TCCCTTTHHH-HSCCEEEEEETTTT
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEc------cCcCccccc----------cccchhhhhh-ccCCEEEEEECCCC
Confidence 88877532111 0112222221110000 000000000 0000000000 34788999998754
Q ss_pred CCCeeeecC-cccceeEEEE--CCCCcEEEEEE------CCCcEEEEeCCCCceE--EEe--eCC---------------
Q 011978 350 KQPKTRMTG-HQQLVNHVYF--SPDGQWVASAS------FDKSIKLWNGTTGKFV--AVF--RGH--------------- 401 (473)
Q Consensus 350 ~~~~~~~~~-~~~~v~~v~~--sp~g~~lasgs------~d~~v~lwd~~~~~~~--~~~--~~h--------------- 401 (473)
+.......+ .......+.| +|+++++..+. .+++|.+|....++.. ..+ ...
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 222222222 1223455655 99999888777 4568887766555321 111 110
Q ss_pred -ccCEEEEEEecCCCEEEEEeC-CCcEEEEECCC---CceeecccccC----------C----CEEEEEEeeCCCEEEEE
Q 011978 402 -VGPVYQISWSADSRLLLSGSK-DSTLKVWDIRT---QKLKQDLPGHA----------D----EVFAVDWSPDGEKVASG 462 (473)
Q Consensus 402 -~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~---~~~~~~~~~h~----------~----~i~~l~~s~d~~~l~s~ 462 (473)
......+.+||||++|.++.. .+.|.+||+.. .+....+.-.. . .-..+.+||||++|.++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 134678999999999888765 67899999853 23333332210 0 13568899999999888
Q ss_pred e
Q 011978 463 G 463 (473)
Q Consensus 463 ~ 463 (473)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 7
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=2.7e-06 Score=74.19 Aligned_cols=187 Identities=9% Similarity=0.056 Sum_probs=122.3
Q ss_pred EEEEEecCCCeEEEeec---CCeEEEEECCCCceeeeeeccCc-eEEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 243 VTCVKWGGDGVIYTGSQ---DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 243 v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...+.|++++.|+.++. ++.|++.|..+++.+..+..... ....+++..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--------------------------- 75 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--------------------------- 75 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---------------------------
Confidence 56788988787665542 58999999999998877642211 111122111
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
....++.-.++.+.++|....+.......+ .. ....+++||+.++.+..++.|.++|..+.+.+..+
T Consensus 76 ----------~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I 142 (266)
T 2iwa_A 76 ----------EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH 142 (266)
T ss_dssp ----------TEEEEEETTCSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ----------CEEEEEEecCCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 123455567889999998654433322223 11 12346668877777767889999999998887766
Q ss_pred eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc-------------CCCEEEEEEeeCCCEE-
Q 011978 399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-------------ADEVFAVDWSPDGEKV- 459 (473)
Q Consensus 399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~s~d~~~l- 459 (473)
.-.. ..++.+.|. +|...+....++.|.+.|..+++....+.-. ....+.++|+|+++.|
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 5321 247788988 7765555556789999999999887665421 1356899999998765
Q ss_pred EEEeCCCcEEe
Q 011978 460 ASGGKDRVLKL 470 (473)
Q Consensus 460 ~s~~~D~~i~~ 470 (473)
+++.....+..
T Consensus 222 VTgk~~~~v~~ 232 (266)
T 2iwa_A 222 VTGKLWPKLFE 232 (266)
T ss_dssp EEETTCSEEEE
T ss_pred EECCCCCeEEE
Confidence 45545555543
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.74 E-value=1.3e-06 Score=87.95 Aligned_cols=281 Identities=16% Similarity=0.186 Sum_probs=156.2
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcC---------CcE-EEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK---------KWI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v-~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
+..|+.++.++.|..+|..+|+.......... ..+ ..+. ....+++.++.|+.+..+|..+++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA-------LWGDKVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE-------EEBTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE-------EECCEEEEEcCCCEEEEEECCCCC
Confidence 45777788888999999988876432211100 000 0000 123567788889999999999999
Q ss_pred EEEEecCcc----ccEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccc
Q 011978 232 CVICLSGHT----LAVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (473)
Q Consensus 232 ~~~~~~~h~----~~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (473)
.+..+.... ..+.+ ..+ .++.++.+.. ++.|..+|..+|+.+.++..... .+...
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-------~p~~~------ 204 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG-------DPALP------ 204 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-------CTTSC------
T ss_pred EeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC-------CCCcc------
Confidence 887664321 11111 011 1556666543 58999999999998877643110 00000
Q ss_pred cCCCcccCCHHHHHHHHHhhh---------------hcc-cCCCCceEEEecCCc-------------------eEEEEe
Q 011978 301 DHTGKQYSSPEEMKKAALERY---------------NKI-KGNAPERLVSGSDDF-------------------TMFLWE 345 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~l~~~~~d~-------------------~i~iwd 345 (473)
+... .... ..... ... .......++.++.++ .+..+|
T Consensus 205 ------~~~~-~~~~-~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 205 ------YEHP-ELRE-AAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp ------CSSH-HHHH-HHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ------cccc-cccc-ccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 0000 0000 00000 000 000123444444443 377777
Q ss_pred CCCCCCCeeeecC-cc-------cceeEEEECCCCc---EEEEEECCCcEEEEeCCCCceEEEeeCCc-----------c
Q 011978 346 PAVSKQPKTRMTG-HQ-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-----------G 403 (473)
Q Consensus 346 ~~~~~~~~~~~~~-~~-------~~v~~v~~sp~g~---~lasgs~d~~v~lwd~~~~~~~~~~~~h~-----------~ 403 (473)
...++........ |. .......+..+|+ +++.++.+|.++++|..+|+.+...+... +
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 6655443322222 21 1122223334665 78899999999999999999874432211 0
Q ss_pred -CE------------------------EEEEEecCCCEEEEE------------------------------------eC
Q 011978 404 -PV------------------------YQISWSADSRLLLSG------------------------------------SK 422 (473)
Q Consensus 404 -~v------------------------~~v~~sp~g~~l~s~------------------------------------s~ 422 (473)
++ ..++++|+...++.. ..
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 00 125778876665531 13
Q ss_pred CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 423 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 423 Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|.|+.||+.+++.+-..+.+ .......+...+..++.++.|+.++.|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 478999999999886554432 2233344556778889999999999886
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.68 E-value=5.8e-05 Score=66.63 Aligned_cols=250 Identities=10% Similarity=0.010 Sum_probs=135.8
Q ss_pred CeEEEEecCCeEEEeeCCCCcccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC
Q 011978 163 KHLVSGSKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~ 238 (473)
.+|+.+.. +.|+.+++....... ..+........++.|.+. ....+++....+.|..+|............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC----CCEEEEEECCCCEEEEEecCCCCcEEEEEC
Confidence 34554443 478888776543210 001111123445665542 223555666678999999876544333333
Q ss_pred ccccEEEEEecCC-CeEEE-eecCCeEEEEECCCCceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHH
Q 011978 239 HTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (473)
Q Consensus 239 h~~~v~~~~~~~~-~~l~s-~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
.......++++++ +.++. ....+.|.+++..... ...+. ........++++++.
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~---------------------- 133 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVR---------------------- 133 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTT----------------------
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCC----------------------
Confidence 3346678888874 55554 4556789998875432 22221 111223444444321
Q ss_pred HHHhhhhcccCCCCceEEEecC--CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC
Q 011978 316 AALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG 392 (473)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~ 392 (473)
...+++... .+.|..+++..... .............++++|++..|..+. ..+.|..+|....
T Consensus 134 -------------g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 134 -------------GNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp -------------TEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred -------------CEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 011222222 34566666543221 111112234578899999877665554 5578999998755
Q ss_pred ceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccC-CCEEEEEEeeCCC
Q 011978 393 KFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGE 457 (473)
Q Consensus 393 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~-~~i~~l~~s~d~~ 457 (473)
.....+.+ ......++.. +..|..+. ..+.|..+|..+++....+.... ...+++++.|++.
T Consensus 200 ~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 200 GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 44333332 2334566654 44555444 56799999999888877765332 2467788888764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=6.6e-06 Score=70.90 Aligned_cols=179 Identities=10% Similarity=0.131 Sum_probs=116.1
Q ss_pred EEEEEecCCCe-EEEeecCC--eEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 243 VTCVKWGGDGV-IYTGSQDC--TIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 243 v~~~~~~~~~~-l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
...+.|+ ++. +.+.+.+| .|+.+|+.+++.++++...... -..++..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---------------------------- 95 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---------------------------- 95 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE----------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe----------------------------
Confidence 4567787 455 44666666 8999999999988776432211 0111111
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.....+..-.++.+.++|....+.......+.. ...+++|++.|+....++.|.++|..+.+.+..+
T Consensus 96 ---------g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 96 ---------KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp ---------TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred ---------CCEEEEEEeeCCEEEEEECccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 112334455688999999866544333222221 1234467777776666778999999999888776
Q ss_pred eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccccc------------CCCEEEEEEeeCCCEEEE
Q 011978 399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------------ADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~s~d~~~l~s 461 (473)
.... ..++.+.|. +|+..|..-.++.|.+.|..+++....+.-. .+-.+.++|+|+++.|..
T Consensus 163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 163 TVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred EeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 5321 346678887 7766655556889999999999886654321 134689999999888776
Q ss_pred EeC
Q 011978 462 GGK 464 (473)
Q Consensus 462 ~~~ 464 (473)
.|.
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 664
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=4.1e-06 Score=84.46 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=69.5
Q ss_pred EEEECC-CCCeEEEEeCCC-----------eEEEEeCCCCc--eeEEE-cCCCCCEEEEEECCCCCeEEEEec-CCeEEE
Q 011978 113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQT--PMFKC-TGHKNWVLCIAWSADGKHLVSGSK-AGELQC 176 (473)
Q Consensus 113 ~~~~sp-~~~~lat~s~d~-----------~i~iwd~~~~~--~~~~~-~~~~~~v~~l~~s~dg~~l~s~~~-dg~i~i 176 (473)
.+++.| +++.++.|+.+. .+.+||..+++ .+... ..+.....++++..+|+.++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 888888887542 68899988764 22222 223334456778889999999884 468999
Q ss_pred eeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEee-CC-----CcEEEEECCCCeEE
Q 011978 177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKCV 233 (473)
Q Consensus 177 wd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s-~d-----g~i~iwd~~~~~~~ 233 (473)
||+.+++..... +........ ... ..++..++.|+ .+ ..+.+||..+++-.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s-~~~-----~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQS-SAT-----MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCE-EEE-----CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccccccc-eEE-----ecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 998876532211 111111111 111 11456777777 34 56889998876643
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.59 E-value=1e-05 Score=69.70 Aligned_cols=179 Identities=8% Similarity=0.025 Sum_probs=117.2
Q ss_pred EEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCce-EEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhh
Q 011978 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (473)
Q Consensus 243 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
...+.|+.+.++.+.+.+|.|+.+|+.+++.++++ ..... -..+++..
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g------------------------------ 105 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG------------------------------ 105 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS------------------------------
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC------------------------------
Confidence 45677775445667788899999999999987765 22211 11122111
Q ss_pred hcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCC
Q 011978 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (473)
Q Consensus 322 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h 401 (473)
....+..-.++.+.++|....+........... . .+++|++.|+.+..++.|.++|..+.+.+..+.-.
T Consensus 106 -------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--w--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 106 -------ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--W--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp -------SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--C--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred -------CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--e--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence 123445567889999998654433332222111 2 33467887777777889999999999888776532
Q ss_pred c-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------------cCCCEEEEEEeeCCCEEEEEe
Q 011978 402 V-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------------HADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 402 ~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~s~d~~~l~s~~ 463 (473)
. ..++.+.|. +|+..|..-.++.|.+.|..+++....+.- -.+-.+.++|+|+++.|...|
T Consensus 175 ~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 175 LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 256788887 776665555688999999999987654432 113568999999877666555
Q ss_pred C
Q 011978 464 K 464 (473)
Q Consensus 464 ~ 464 (473)
.
T Consensus 254 K 254 (268)
T 3nok_A 254 K 254 (268)
T ss_dssp T
T ss_pred C
Confidence 3
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=8.1e-05 Score=64.87 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=125.2
Q ss_pred CEEEEEECCCCCeEEEEec--CCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978 152 WVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~ 229 (473)
....++|++|+...++.+. ++.|++.|+.+++.......+......++.+. ....+++.-.++.+.++|..+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~------g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL------NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEETTCSEEEEEETTT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe------CCEEEEEEecCCEEEEEECCC
Confidence 3578999998754444443 58999999999986544322222222344432 123455555678999999999
Q ss_pred CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCC
Q 011978 230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (473)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
.+.+..+.-....-..++.++ +.++.+..+++|.++|..+.+.++.+.-.
T Consensus 96 ~~v~~~i~~g~~~g~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~~~I~Vg----------------------------- 145 (266)
T 2iwa_A 96 LSNIKNFTHQMKDGWGLATDG-KILYGSDGTSILYEIDPHTFKLIKKHNVK----------------------------- 145 (266)
T ss_dssp TEEEEEEECCSSSCCEEEECS-SSEEEECSSSEEEEECTTTCCEEEEEECE-----------------------------
T ss_pred CcEEEEEECCCCCeEEEEECC-CEEEEECCCCeEEEEECCCCcEEEEEEEC-----------------------------
Confidence 888877742211112344432 24555556788888888776655443210
Q ss_pred HHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
.. + ..-..++.+.|. +|...+....++.|.+.|.
T Consensus 146 --------------------------~~-~------------------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 146 --------------------------YN-G------------------HRVIRLNELEYI-NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp --------------------------ET-T------------------EECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred --------------------------CC-C------------------cccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence 00 0 000124456666 6765555556789999999
Q ss_pred CCCceEEEeeCC-------------ccCEEEEEEecCCCE-EEEEeCCCcEEEEECCCC
Q 011978 390 TTGKFVAVFRGH-------------VGPVYQISWSADSRL-LLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 390 ~~~~~~~~~~~h-------------~~~v~~v~~sp~g~~-l~s~s~Dg~i~iwd~~~~ 434 (473)
.+++.+..+.-. ....+.++|+|+++. ++++...+.+...++...
T Consensus 180 ~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 180 KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999998887532 135689999999875 555556788888887653
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.56 E-value=1.7e-05 Score=78.20 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=66.8
Q ss_pred CCeEEEEec-CCeEEEeeC-CCCccccccCCCcCCcEE------EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEE
Q 011978 162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKKWIT------GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233 (473)
Q Consensus 162 g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~v~------~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~ 233 (473)
+..++.++. ++.|.-+|. .+|+..-.........+. .+...|. ....+++.++.|+.+..+|..+++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA---YGAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE---EECCEEEEEeCCCEEEEEECCCCCEE
Confidence 445666666 788888888 787754322111000000 0000000 12356777888999999999999887
Q ss_pred EEecCcc--c--cEEE-EEecCCCeEEEeec------CCeEEEEECCCCceeeeeec
Q 011978 234 ICLSGHT--L--AVTC-VKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 234 ~~~~~h~--~--~v~~-~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~ 279 (473)
....... . .+.+ ... .++.++.++. ++.|..+|..+|+.+.++..
T Consensus 139 W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 6543211 0 1211 111 1566666655 79999999999998876643
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.55 E-value=0.0002 Score=64.60 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=66.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCcccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSG 186 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~~ 186 (473)
.....++|+++|+.+++-..++.|..||..+.... ... .......++++++|+.+++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~-~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE-EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 34668999999997777667899999998764322 222 23458899999999865554332 247777776665321
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
...........++... .....+++...++.|..+|...+
T Consensus 110 ~~~~~~~~~~~g~~~~-----~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPL-----SDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEECTTCSCEEEEEES-----SSSEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCccccCccccc-----CCCcEEEEECCCCeEEEEeCCCC
Confidence 1100111222333221 12223344445777777776654
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.53 E-value=5.9e-05 Score=68.70 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=67.9
Q ss_pred ceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCc--eEEEeeCCccCEEEEEEecCCCEEEEEeC----------CCcEEE
Q 011978 362 LVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGK--FVAVFRGHVGPVYQISWSADSRLLLSGSK----------DSTLKV 428 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~s~----------Dg~i~i 428 (473)
..+.++++|+|++|..+ +..+.|..|++.... ....+....+ ...+++.++|++.++... .+.|..
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEE
Confidence 35679999999866655 456889999987421 1122211223 788999999987666544 466888
Q ss_pred EECCCCceeeccccc----CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 429 WDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 429 wd~~~~~~~~~~~~h----~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+|.. ++....+... ...+..+.+ .+++.+++....+.|..+.
T Consensus 265 ~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 265 FDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp ECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred ECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 8875 5554444322 234566666 4666666666667776653
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.52 E-value=0.0002 Score=63.18 Aligned_cols=249 Identities=12% Similarity=0.025 Sum_probs=135.5
Q ss_pred eEEEEeCCCeEEEEeCCCCcee-----EEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccccCCCcCCc
Q 011978 122 QLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKW 195 (473)
Q Consensus 122 ~lat~s~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 195 (473)
+|..+.. +.|+.+++.+.... ..+.........++|++++..|+.+. .++.|..++...+.... ........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~~~~~~ 80 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-IIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-EECTTCCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-EEECCCCC
Confidence 4444443 47888887654310 11111123467899999776666554 56899999987654221 12122234
Q ss_pred EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec---CCeEEEEECCCC
Q 011978 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ---DCTIKVWETTQG 271 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~---d~~i~~wd~~~~ 271 (473)
..++.+.+. ....+++....+.|.+++...................+++++ ++.++.+.. .+.|..++...
T Consensus 81 p~~ia~d~~----~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg- 155 (267)
T 1npe_A 81 PEGIALDHL----GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG- 155 (267)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred ccEEEEEec----CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence 566666542 123455556677899998865332222222223567888988 466665554 36787777643
Q ss_pred ceeeeee-ccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCC
Q 011978 272 KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (473)
Q Consensus 272 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 350 (473)
.....+. ........++++++. ...+++....+.|..++.....
T Consensus 156 ~~~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCCCc
Confidence 2222221 111223344443321 1234455556677777764321
Q ss_pred CCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCc-cCEEEEEEecCCC
Q 011978 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVYQISWSADSR 415 (473)
Q Consensus 351 ~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~sp~g~ 415 (473)
. .....+ ......+++. ++.++++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 201 ~-~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 201 R-RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp E-EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred e-EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 1 111111 1234556654 34444444456899999999999888875432 2467788888875
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.50 E-value=6.4e-05 Score=64.17 Aligned_cols=181 Identities=9% Similarity=0.081 Sum_probs=115.5
Q ss_pred cEEEEEecCCCeEEEeecC--CeEEEEECCCCceeeeeeccCceE-EEEEecccceeeeccccCCCcccCCHHHHHHHHH
Q 011978 242 AVTCVKWGGDGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
....+.|+++.++.+.+.+ ..|+.+|+.+++.++++....... ..+++..
T Consensus 22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--------------------------- 74 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--------------------------- 74 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---------------------------
Confidence 3557788764344455554 489999999999887764332210 1111111
Q ss_pred hhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.......-.++.+.++|....+.......+... . .+++++..|..+..++.|.++|..+.+.+..+
T Consensus 75 ----------~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--w--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 75 ----------DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--W--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--C--EEEECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ----------CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--e--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 123444566889999997654433332222222 2 33456776666666889999999999888776
Q ss_pred eCCc-----cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecccc-------------cCCCEEEEEEeeCCCEEE
Q 011978 399 RGHV-----GPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------------HADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 399 ~~h~-----~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~s~d~~~l~ 460 (473)
+-.. ..++.+.|. +|+..|..-.+..|.+.|..+++....+.- -.+-.+.++|+|+++.|.
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 5422 356778876 676665555677899999999987654431 113568999999887776
Q ss_pred EEeC
Q 011978 461 SGGK 464 (473)
Q Consensus 461 s~~~ 464 (473)
..|.
T Consensus 220 VTGK 223 (243)
T 3mbr_X 220 VTGK 223 (243)
T ss_dssp EEET
T ss_pred EECC
Confidence 6654
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.44 E-value=5.7e-05 Score=74.51 Aligned_cols=116 Identities=9% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCeEEEEec-CCeEEEeeC-CCCccccccCCCcCC---------c-EEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978 162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKK---------W-ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (473)
Q Consensus 162 g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~---------~-v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~ 229 (473)
+..|+.++. ++.|.-+|. .+|+..-........ . ...+.+.|.. .....+++.++.|+.+.-+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEECCC
Confidence 446666666 788888888 787754322111000 0 0111211100 00112377888899999999999
Q ss_pred CeEEEEecCcc----ccEEE-EEecCCCeEEEee------cCCeEEEEECCCCceeeeeec
Q 011978 230 RKCVICLSGHT----LAVTC-VKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 230 ~~~~~~~~~h~----~~v~~-~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~ 279 (473)
++.+....... ..+.+ ... .++.++.++ .++.|+-+|..+|+.+.++..
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 99876643221 01111 111 156666665 389999999999998876653
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.44 E-value=6.4e-06 Score=79.42 Aligned_cols=242 Identities=15% Similarity=0.073 Sum_probs=140.9
Q ss_pred CCCCeEEEEeC-CCeEEEEeCCCCceeEEEcC-CCCCEEEEEE-C-CCCCeEEEEe------------------cCCeEE
Q 011978 118 PDGRQLASGSG-DTTVRLWDLNTQTPMFKCTG-HKNWVLCIAW-S-ADGKHLVSGS------------------KAGELQ 175 (473)
Q Consensus 118 p~~~~lat~s~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~-s-~dg~~l~s~~------------------~dg~i~ 175 (473)
|||++|+.... ++.|.+.|+.+.+....+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888877664 56799999999876653321 2345788888 5 9999998884 345789
Q ss_pred EeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCC------------------------------------
Q 011978 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------------------------------------ 219 (473)
Q Consensus 176 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~d------------------------------------ 219 (473)
+.|..+.+...+...+-. ...+..+| ++.++.+.+.+
T Consensus 179 vID~~t~~v~~qI~Vgg~--pd~~~~sp-----dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGN--LDNCDADY-----EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEETTTTEEEEEEEESSC--CCCEEECS-----SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEECCCCeEEEEEEeCCC--ccceEECC-----CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 999887665433221111 11122222 22233222211
Q ss_pred --CcEEEEECCC--CeE-EEEecCccccEEEEEecCCCe--EEEeecCCeEEEEECCCCceeeeeeccCceEEEEEeccc
Q 011978 220 --GDARIWDVSL--RKC-VICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292 (473)
Q Consensus 220 --g~i~iwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~ 292 (473)
+.|.+.|..+ ++. +..+.- .....++.++|||. ++++..+.+|.++|+.+.+.. +.+. +.+.
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~--------l~~~ 320 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYEN--------ADPR 320 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSC--------CCGG
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccc--------cCcc
Confidence 3477777776 333 222211 12345678899984 456667889999998753211 0000 0000
Q ss_pred ceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCC
Q 011978 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (473)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g 372 (473)
..++ ..+. -......++|+|+|
T Consensus 321 -------------------------------------~~v~----------~~v~-----------vG~gP~h~aF~~dG 342 (595)
T 1fwx_A 321 -------------------------------------SAVV----------AEPE-----------LGLGPLHTAFDGRG 342 (595)
T ss_dssp -------------------------------------GGEE----------ECCB-----------CCSCEEEEEECTTS
T ss_pred -------------------------------------cceE----------EEcC-----------CCCCcceEEECCCC
Confidence 0000 0000 01236778999999
Q ss_pred cEEEEEECCCcEEEEeCCC----------CceEEEeeCCccCE-----EEEEEecCCCEEEEEeC---CCcE--------
Q 011978 373 QWVASASFDKSIKLWNGTT----------GKFVAVFRGHVGPV-----YQISWSADSRLLLSGSK---DSTL-------- 426 (473)
Q Consensus 373 ~~lasgs~d~~v~lwd~~~----------~~~~~~~~~h~~~v-----~~v~~sp~g~~l~s~s~---Dg~i-------- 426 (473)
...++...|+.|.+||+.+ .+.+..+..|-.+- .+..++|||++|+++.. |+-+
T Consensus 343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~ 422 (595)
T 1fwx_A 343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPE 422 (595)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCE
T ss_pred eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCC
Confidence 5445566799999999876 45667776664432 12345799999998753 4431
Q ss_pred --EEEECCCCc
Q 011978 427 --KVWDIRTQK 435 (473)
Q Consensus 427 --~iwd~~~~~ 435 (473)
.++|+..++
T Consensus 423 ~~ql~dis~~~ 433 (595)
T 1fwx_A 423 NDQLIDISGDK 433 (595)
T ss_dssp EEEEEECSSSS
T ss_pred cceEEEcCCCc
Confidence 788986544
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.43 E-value=0.00015 Score=62.56 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=109.3
Q ss_pred EEEEEECCCCCeEEEEecCC--eEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC
Q 011978 153 VLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (473)
Q Consensus 153 v~~l~~s~dg~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~ 230 (473)
...|.|+ ++.+..+.+.+| .|+.+|+++++............-.++... ....++..-.++.+.++|..+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~------g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW------KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe------CCEEEEEEeeCCEEEEEECccC
Confidence 4678888 666666777766 899999999986543221111111223221 1223344445778888888888
Q ss_pred eEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCH
Q 011978 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (473)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (473)
+.+.++.-.... ..+++.. +.|+.+..+++|.++|..+.+.+.++....
T Consensus 118 ~~~~ti~~~~eG-~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~----------------------------- 166 (262)
T 3nol_A 118 RQVRSFNYDGEG-WGLTHND-QYLIMSDGTPVLRFLDPESLTPVRTITVTA----------------------------- 166 (262)
T ss_dssp CEEEEEECSSCC-CCEEECS-SCEEECCSSSEEEEECTTTCSEEEEEECEE-----------------------------
T ss_pred cEEEEEECCCCc-eEEecCC-CEEEEECCCCeEEEEcCCCCeEEEEEEecc-----------------------------
Confidence 777666532111 2233332 244544446778888877766554432100
Q ss_pred HHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCc-ccceeEEEECCCCcEEEEEECCCcEEEEeC
Q 011978 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (473)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~lasgs~d~~v~lwd~ 389 (473)
+ +. -..++.+.+. +|+..|..-.++.|.+.|.
T Consensus 167 ---------------------------~-------------------g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 167 ---------------------------H-------------------GEELPELNELEWV-DGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp ---------------------------T-------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred ---------------------------C-------------------CccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence 0 00 0123344554 6665555556778999999
Q ss_pred CCCceEEEeeCC------------ccCEEEEEEecCCCEEEEEeC
Q 011978 390 TTGKFVAVFRGH------------VGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 390 ~~~~~~~~~~~h------------~~~v~~v~~sp~g~~l~s~s~ 422 (473)
.+|+.+..+... ....+.++|+|+++.|...++
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999988776532 135689999999887776664
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.38 E-value=1.2e-05 Score=77.61 Aligned_cols=238 Identities=11% Similarity=0.048 Sum_probs=135.6
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEecC-ccccEEEEEe-c-CCC-eEEEee------------------cCCeEEEEECC
Q 011978 212 RFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKW-G-GDG-VIYTGS------------------QDCTIKVWETT 269 (473)
Q Consensus 212 ~~~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~-~-~~~-~l~s~~------------------~d~~i~~wd~~ 269 (473)
.|+....+..|.+.|+.+.++...+.- .......+++ . +++ ++++++ .++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 345555667899999999998774321 1234667776 3 554 566653 35688999999
Q ss_pred CCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHH--------------HHHHHhhhhcccCCCCceEEEe
Q 011978 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM--------------KKAALERYNKIKGNAPERLVSG 335 (473)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~ 335 (473)
+.+...++.-.+ .-..++++++..+...+....... .....+ ....... .+ .....
T Consensus 184 t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~-~~i~~~~~~~~d~v~V~~~~~~~~~v~----~G---k~~~i- 253 (595)
T 1fwx_A 184 KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKG-MTLPEMTAAEMDHIVVFNIAEIEKAIA----AG---DYQEL- 253 (595)
T ss_dssp TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCC-SSHHHHTCCSEEEEEEEEHHHHHHHHH----HT---CSEEE-
T ss_pred CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccC-cchhhccccccceEEEeeccceeEecc----CC---CeeEE-
Confidence 888887765433 223444555543322221111000 000000 0000000 01 11111
Q ss_pred cCCceEEEEeCCC--CCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCc------------eEEEeeC
Q 011978 336 SDDFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGK------------FVAVFRG 400 (473)
Q Consensus 336 ~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~------------~~~~~~~ 400 (473)
+.+.+.|... ......... -.....++.++|||++++.++ .+.+|.++|+.+.+ .+.....
T Consensus 254 ---~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 254 ---NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp ---TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred ---CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 3488888765 222111221 123456799999999887765 56799999998653 2333332
Q ss_pred CccCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceeecccccCCCE-----EEEEEeeCCCEEEEEeC
Q 011978 401 HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHADEV-----FAVDWSPDGEKVASGGK 464 (473)
Q Consensus 401 h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~----------~~~~~~~~~h~~~i-----~~l~~s~d~~~l~s~~~ 464 (473)
- .....++|+|+|...++.-.|+.|.+||+.. .+.+..+..|..+- .+...+|||++|+++..
T Consensus 330 G-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 330 G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp C-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred C-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 2 3467899999994444556799999999876 34455555443211 12345899999998754
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.34 E-value=0.00022 Score=61.40 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=111.8
Q ss_pred CEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCe
Q 011978 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (473)
Q Consensus 152 ~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~ 231 (473)
....|.|+ ++.+.++.+.+|.|+.+|+++++..... ......-.++... ....++..-.++.+.++|..+.+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~------g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD------GERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC------SSCEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe------CCEEEEEEccCCEEEEEECCcCc
Confidence 34678887 3556667788899999999999876544 2111112233322 12344445567888888988888
Q ss_pred EEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHH
Q 011978 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (473)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (473)
.+.++.-... -..+++.. +.|+.+..+++|.++|..+.+.++++.-..
T Consensus 128 ~~~ti~~~~e-GwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------------------ 175 (268)
T 3nok_A 128 RERTTRYSGE-GWGLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------------------ 175 (268)
T ss_dssp EEEEEECSSC-CCCEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECEE------------------------------
T ss_pred EEEEEeCCCc-eeEEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------------------
Confidence 8776653211 12333332 345555557788888877766655432100
Q ss_pred HHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCC
Q 011978 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~ 391 (473)
++ ..-..++.+.|. +|+..|....+..|.+.|..+
T Consensus 176 --------------------------~g------------------~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 176 --------------------------RG------------------QPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp --------------------------TT------------------EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred --------------------------CC------------------cccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 00 000123445554 676555555677899999999
Q ss_pred CceEEEeeCC-------------ccCEEEEEEecCCCEEEEEe
Q 011978 392 GKFVAVFRGH-------------VGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 392 ~~~~~~~~~h-------------~~~v~~v~~sp~g~~l~s~s 421 (473)
|+.+..+.-. ....+.++|+|+++.|...+
T Consensus 211 G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 211 GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9988776532 13678999999876555554
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00044 Score=62.83 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=49.2
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcC------------------CCCCEEEEEECCCCCeEEEEecC
Q 011978 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTG------------------HKNWVLCIAWSADGKHLVSGSKA 171 (473)
Q Consensus 111 V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~------------------~~~~v~~l~~s~dg~~l~s~~~d 171 (473)
..+++++++|+.+.++..++.|..||..++... +.... .......+++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 446789999987888888999999998765422 11110 01347889999733356666555
Q ss_pred CeEEEeeCCCCc
Q 011978 172 GELQCWDPQTGK 183 (473)
Q Consensus 172 g~i~iwd~~~~~ 183 (473)
+.|..+|..++.
T Consensus 101 ~~i~~~d~~~g~ 112 (322)
T 2fp8_A 101 YHLSVVGSEGGH 112 (322)
T ss_dssp TEEEEECTTCEE
T ss_pred CCEEEEeCCCCE
Confidence 668888877553
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.28 E-value=0.00026 Score=69.89 Aligned_cols=116 Identities=13% Similarity=-0.021 Sum_probs=63.7
Q ss_pred CCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEece--eccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCc
Q 011978 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP--VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (473)
Q Consensus 162 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h 239 (473)
+..++.++.++.|.-+|..+|+..-........... ..+.. ........+++.++.|+.+.-+|..+++.+......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~-~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR-PCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC-CSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc-cccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 345666665445888888888754322111000000 00000 000012356778888999999999999988665422
Q ss_pred cc----cEEE--EEecC--CC--eEEEee------cCCeEEEEECCCCceeeeee
Q 011978 240 TL----AVTC--VKWGG--DG--VIYTGS------QDCTIKVWETTQGKLIRELK 278 (473)
Q Consensus 240 ~~----~v~~--~~~~~--~~--~l~s~~------~d~~i~~wd~~~~~~~~~~~ 278 (473)
.. .+.+ +.... ++ .++.++ .++.|.-+|..+|+.+....
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 10 1110 11111 12 566655 37899999999999887654
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.26 E-value=0.0015 Score=55.76 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=111.3
Q ss_pred CCEEEEEECCCCCeEEEEecC--CeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC
Q 011978 151 NWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (473)
Q Consensus 151 ~~v~~l~~s~dg~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~ 228 (473)
.....|.|++ +....+.+.+ +.|+.+|+.+++......-.....-.++... ....++..-.++.+.++|..
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~------~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW------RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEESSSSEEEEEETT
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe------CCEEEEEEeeCCEEEEEECC
Confidence 3466788875 5555666665 4899999999986543211111111223221 12344455567889999998
Q ss_pred CCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccC
Q 011978 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (473)
Q Consensus 229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
+.+.+.++.-.... ..++... +.|+.+..++.|.++|..+.+.++++.-..
T Consensus 94 tl~~~~ti~~~~~G-wglt~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~--------------------------- 144 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WALTSDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTA--------------------------- 144 (243)
T ss_dssp TTEEEEEEECSSCC-CEEEECS-SCEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------
T ss_pred cCcEEEEEeCCCCc-eEEeeCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEcc---------------------------
Confidence 88888776532222 3444433 345555557788888887776655442100
Q ss_pred CHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEe
Q 011978 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd 388 (473)
++. .-..++.+.+. +|+..|..-.+..|.+.|
T Consensus 145 -----------------------------~g~------------------~~~~lNeLe~~-~G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 145 -----------------------------GGR------------------PLDNLNELEWV-NGELLANVWLTSRIARID 176 (243)
T ss_dssp -----------------------------TTE------------------ECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred -----------------------------CCc------------------ccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence 000 00112333433 566555554567899999
Q ss_pred CCCCceEEEeeCC-------------ccCEEEEEEecCCCEEEEEeC
Q 011978 389 GTTGKFVAVFRGH-------------VGPVYQISWSADSRLLLSGSK 422 (473)
Q Consensus 389 ~~~~~~~~~~~~h-------------~~~v~~v~~sp~g~~l~s~s~ 422 (473)
..+|+.+..+.-. ....+.++|+|+++.|...++
T Consensus 177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999988776521 135789999998776666653
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.19 E-value=0.0023 Score=57.52 Aligned_cols=222 Identities=9% Similarity=0.034 Sum_probs=119.7
Q ss_pred EEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecC--C-eEEEEECCCCc
Q 011978 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD--C-TIKVWETTQGK 272 (473)
Q Consensus 196 v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--~-~i~~wd~~~~~ 272 (473)
..++.|.+ ++..+++...++.|..||....... ... .......+++.+++.++.+... + .|..+|..+++
T Consensus 34 pegia~~~-----~g~lyv~d~~~~~I~~~d~~g~~~~-~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 34 LENLASAP-----DGTIFVTNHEVGEIVSITPDGNQQI-HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEEEEECT-----TSCEEEEETTTTEEEEECTTCCEEE-EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred cceEEECC-----CCCEEEEeCCCCeEEEECCCCceEE-EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 34555544 2334555556777888877654322 221 1235778899988876665532 2 46667777765
Q ss_pred eeeeeecc-CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCC
Q 011978 273 LIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (473)
Q Consensus 273 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 351 (473)
........ ......++..+ ....+++...++.++.+|......
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~------------------------------------~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLS------------------------------------DTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEEEEECTTCSCEEEEEESS------------------------------------SSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEeCCCccccCcccccC------------------------------------CCcEEEEECCCCeEEEEeCCCCcE
Confidence 43221110 00011111100 011234444567777777542110
Q ss_pred Cee---------eecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCC-Cce--EEEeeCCccCEEEEEEecCCCEEE
Q 011978 352 PKT---------RMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTT-GKF--VAVFRGHVGPVYQISWSADSRLLL 418 (473)
Q Consensus 352 ~~~---------~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~-~~~--~~~~~~h~~~v~~v~~sp~g~~l~ 418 (473)
... .....-...+.+ +|++++|..+ +..+.|..+|... ++. ...+.. ......++++++|++.+
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence 000 000111234455 7888766555 4567899999864 331 112211 12345688999998877
Q ss_pred EEeCCCcEEEEECCCCce--eecccccCCCEEEEEEe---eCCCEEEEEeC
Q 011978 419 SGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWS---PDGEKVASGGK 464 (473)
Q Consensus 419 s~s~Dg~i~iwd~~~~~~--~~~~~~h~~~i~~l~~s---~d~~~l~s~~~ 464 (473)
+....+.|.++|.. ++. +..+........+++|. ||++.|..++.
T Consensus 228 a~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 228 ATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 77778899999976 444 22333333568899998 89877765554
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.18 E-value=0.0004 Score=71.01 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=92.9
Q ss_pred cCCcc-cEEEEEEC-CCCCeEEEEeC-C----CeEEEEeCCCC-ceeEE-EcCCCCCEEEEEECCCCCeEEEEecC----
Q 011978 105 AGHTE-AVLSVAFS-PDGRQLASGSG-D----TTVRLWDLNTQ-TPMFK-CTGHKNWVLCIAWSADGKHLVSGSKA---- 171 (473)
Q Consensus 105 ~gh~~-~V~~~~~s-p~~~~lat~s~-d----~~i~iwd~~~~-~~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~d---- 171 (473)
.+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. +. .....+.|+|||+.|+....+
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 34553 67889999 99999886532 2 35999999988 53211 11 113467899999988887765
Q ss_pred -CeEEEeeCCCCccccccC-C-CcCCcEEEEEeceeccCCCCceEEEeeC---CCcEEEEECCCC--eE--EEEecCccc
Q 011978 172 -GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLR--KC--VICLSGHTL 241 (473)
Q Consensus 172 -g~i~iwd~~~~~~~~~~~-~-~~~~~v~~i~~~~~~~~~~~~~~~s~s~---dg~i~iwd~~~~--~~--~~~~~~h~~ 241 (473)
..|+++++.++......+ . ........+.|+| ++.+++..+. ...|.++|+.++ .. .....+...
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 368888887764321111 1 2223455666665 5556654442 346778888765 22 222233344
Q ss_pred cEEEEEecCCCeE-EEeecC----CeEEEEECCC
Q 011978 242 AVTCVKWGGDGVI-YTGSQD----CTIKVWETTQ 270 (473)
Q Consensus 242 ~v~~~~~~~~~~l-~s~~~d----~~i~~wd~~~ 270 (473)
...++.|..++.| +....+ ..|..+|+.+
T Consensus 321 ~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 321 VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5556665544544 444333 3566667654
No 267
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.99 E-value=0.016 Score=57.42 Aligned_cols=347 Identities=10% Similarity=-0.014 Sum_probs=172.3
Q ss_pred ccEEEEEECCCCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCccc
Q 011978 109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS 185 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~ 185 (473)
.....+++.+.++.|+.+ ...+.|.+.++.+..........-.....|++.|.+..|+.... .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 467889999977766655 46789999999765433323233344567889887666665543 35677666653221
Q ss_pred cccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEE
Q 011978 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (473)
Q Consensus 186 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~ 265 (473)
.......-...+++++.+. ....+++-+..+.|...|+..........+.......+++..+..+++-...+.|..
T Consensus 163 ~~l~~~~~~~P~Glald~~----~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~ 238 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILA 238 (619)
T ss_dssp EEEECSSCSSEEEEEEETT----TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEE
T ss_pred EEEEeCCCCCCcEEEEEcc----CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEE
Confidence 1122222345567776542 223444445566788887764332222221111123456665644555556788999
Q ss_pred EECCCCceeeeeeccCceEEEEEe-ccccee----ee----cccc------CC--CcccCCHHHHHHHHHhhhhcccCCC
Q 011978 266 WETTQGKLIRELKGHGHWVNSLAL-STEYAL----RT----GAFD------HT--GKQYSSPEEMKKAALERYNKIKGNA 328 (473)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~-~~~~~~----~~----~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
.|..+|+....+.........+.+ ++.... .+ +... .. +.....+..... ..+......+ .
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l-~~d~~~C~~~-~ 316 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL-LENGKTCKDG-A 316 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB-CTTSSCBCSS-C
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee-cccCcccCCC-C
Confidence 998887665544332211222222 111000 00 0000 00 000000000000 0000000000 1
Q ss_pred CceEEEecCCceEEEEeCCCCCCCeeeec-CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEE
Q 011978 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (473)
Q Consensus 329 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~ 406 (473)
...|+.+ ..+.|+..++.........+. ..-..+..++|++.+..|..+. ..+.|+.++.........+........
T Consensus 317 ~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~ 395 (619)
T 3s94_A 317 TELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD 395 (619)
T ss_dssp SEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred ceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence 1122222 234455555543322111111 1223467899998655555544 567899998875444444443345667
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 407 QISWSADSRL-LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 407 ~v~~sp~g~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
.+++.+.+.. ..+-+..+.|.+.++........+...-....++++.|...+|..++
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEec
Confidence 8999875554 44445567899998875433222222334567888888644444443
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.97 E-value=0.01 Score=54.37 Aligned_cols=243 Identities=10% Similarity=0.001 Sum_probs=126.3
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCccccc
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGN 187 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~ 187 (473)
+...|.+..+++ +|+.+ ....|+..++.+......... ......++|++.+..|+... ..+.|+.+++..+.....
T Consensus 34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 344566666644 33333 345688888876544333333 34478999998666666554 568899999876542211
Q ss_pred cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec-C-CeEE
Q 011978 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIK 264 (473)
Q Consensus 188 ~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~-d-~~i~ 264 (473)
.........++++.+. .+..+++-...+.|.+.++..................+++++ ++.|+.... . +.|.
T Consensus 111 -~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 111 -VSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp -ECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred -EeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 1111122234444321 223444555566777777654432222222223445566664 334433322 1 3333
Q ss_pred EEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEE
Q 011978 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (473)
Q Consensus 265 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 344 (473)
.++.... .
T Consensus 186 r~~~dG~-~----------------------------------------------------------------------- 193 (349)
T 3v64_C 186 ASSMDGS-G----------------------------------------------------------------------- 193 (349)
T ss_dssp EEETTSC-S-----------------------------------------------------------------------
T ss_pred EEeCCCC-C-----------------------------------------------------------------------
Confidence 3332110 0
Q ss_pred eCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCC
Q 011978 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 345 d~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
........-...+.|+++|++..|..+. ..+.|..+|+........+.........+++ ..+....+-...
T Consensus 194 -------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 194 -------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp -------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred -------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 0000001123467899998766665554 4567999987654333333334456677888 345555555566
Q ss_pred CcEEEEECCCCceeec
Q 011978 424 STLKVWDIRTQKLKQD 439 (473)
Q Consensus 424 g~i~iwd~~~~~~~~~ 439 (473)
+.|..+|..+++....
T Consensus 266 ~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 266 KSINSANKFTGKNQEI 281 (349)
T ss_dssp TEEEEEETTTCCSCEE
T ss_pred CeEEEEEccCCCccEE
Confidence 7788888655554333
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.0098 Score=53.95 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=66.9
Q ss_pred cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee-C---CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011978 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-G---HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~-~---h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~ 434 (473)
....+..+++.+++++++. +.+|.+++.+...|+.-..+. . +...+.++.+.+++..++++. +|.| .+....+
T Consensus 203 ~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 3456788999999886654 457877776433233222221 1 223588999998887777654 6766 3444444
Q ss_pred ceeeccc---ccCCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 435 KLKQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 435 ~~~~~~~---~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
+.-..+. .....++++.|.++++ ++.++.+|.|.-+.
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 3322222 2235678898986654 66777788776553
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.94 E-value=0.013 Score=54.57 Aligned_cols=218 Identities=7% Similarity=-0.077 Sum_probs=116.6
Q ss_pred eeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEecccc
Q 011978 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293 (473)
Q Consensus 216 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~ 293 (473)
.+....|+..++..........+ ......++|++ ++.|+.. ...+.|..++...+.....+.........+++.+.
T Consensus 92 ~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~- 169 (386)
T 3v65_B 92 FANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV- 169 (386)
T ss_dssp EECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT-
T ss_pred eecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC-
Confidence 34446777788776554443333 33467888885 4555544 45678888887654322211111111111222110
Q ss_pred eeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCc
Q 011978 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 373 (473)
....+++-...+.|.+.++.... ..............++++|.+.
T Consensus 170 ----------------------------------~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 170 ----------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp ----------------------------------TTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTT
T ss_pred ----------------------------------CCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCC
Confidence 11123344445566666554322 2222223335678999999766
Q ss_pred EEEEEE-CC-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEE
Q 011978 374 WVASAS-FD-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAV 450 (473)
Q Consensus 374 ~lasgs-~d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l 450 (473)
.|.... .. +.|..++.................+.++|+|++..|..+. ..+.|..+|+........+........++
T Consensus 215 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi 294 (386)
T 3v65_B 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 294 (386)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence 555544 34 6788888764433333333345678999998777666554 46679999987543332232223345677
Q ss_pred EEeeCCCEEEEEeCCCcEEec
Q 011978 451 DWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 451 ~~s~d~~~l~s~~~D~~i~~w 471 (473)
++ ..+..+++-...+.|..+
T Consensus 295 av-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 295 TV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EE-ETTEEEEEETTTTEEEEE
T ss_pred EE-ECCEEEEeeCCCCeEEEE
Confidence 77 344444554455555443
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.90 E-value=0.014 Score=53.53 Aligned_cols=215 Identities=7% Similarity=-0.078 Sum_probs=114.1
Q ss_pred CCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCceeeeeeccCceEEEEEeccccee
Q 011978 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (473)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (473)
....|+..++..........+. .....++|++ ++.|+.. ...+.|..++...+.....+.........+++.+.
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--- 126 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--- 126 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT---
T ss_pred cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC---
Confidence 3445666776655444333332 3467888885 4555544 45678888887654322211111111122322211
Q ss_pred eeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEE
Q 011978 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~l 375 (473)
....+++-...+.|.+.++.... ..............++++|.+..|
T Consensus 127 --------------------------------~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 127 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp --------------------------------TTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred --------------------------------CCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeE
Confidence 11223444455667777654322 222222333457899999966555
Q ss_pred EEE-ECC-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEE
Q 011978 376 ASA-SFD-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 452 (473)
Q Consensus 376 asg-s~d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 452 (473)
... ... +.|..+++................+.++++|++..|..+. ..+.|..+|+........+........++++
T Consensus 174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 544 344 6788888764333222233345678999998777666554 4668999998754332222222334567777
Q ss_pred eeCCCEEEEEeCCCcEEe
Q 011978 453 SPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 453 s~d~~~l~s~~~D~~i~~ 470 (473)
..+..+++-...+.|..
T Consensus 254 -~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 254 -FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp -ETTEEEEEETTTTEEEE
T ss_pred -ECCEEEEecCCCCeEEE
Confidence 33444444444455543
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.02 Score=54.12 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=87.2
Q ss_pred cEEEEEECC-CCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC-C----eEEEeeCCCCc
Q 011978 110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK 183 (473)
Q Consensus 110 ~V~~~~~sp-~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d-g----~i~iwd~~~~~ 183 (473)
....++++| ++..|..+...+.|+.+|+.++....... .......++|+++|+.|+.+... + .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456789998 46666666555889999998765433332 34557889999999967666542 2 2333333 222
Q ss_pred ccc-ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe-cCccccEEEEEecCCCe-EEEe-ec
Q 011978 184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAVTCVKWGGDGV-IYTG-SQ 259 (473)
Q Consensus 184 ~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~-~~ 259 (473)
... ..+.. .....++++.|. .+..+++-..++.|..+|...+...... .+.......++|++++. |+.+ ..
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeeeecc-CCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 110 00000 111223333321 3344555556788999998876542211 12223456789998874 5544 46
Q ss_pred CCeEEEEECC
Q 011978 260 DCTIKVWETT 269 (473)
Q Consensus 260 d~~i~~wd~~ 269 (473)
.+.|..++..
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 6788887654
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.79 E-value=0.023 Score=52.78 Aligned_cols=241 Identities=11% Similarity=-0.040 Sum_probs=125.2
Q ss_pred EEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEE
Q 011978 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (473)
Q Consensus 155 ~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~ 234 (473)
|.+..++ ..|+.+ ....|+..++..+.... ... ......+++|.+. ....+.+-...+.|..+++.......
T Consensus 81 C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~-~~~-~~~~~~gl~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 81 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTL-LLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp EEECSSC-CEEEEE-CBSCEEEECTTSCCCEE-EEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred ECCcccc-ceeEee-cCccceeeccCCCcEEE-Eec-CCCccEEEEEecC----CCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 4444442 334333 33568888876544221 122 2234677777652 23345555667788888887654333
Q ss_pred EecCccccEEEEEecC-CCeE-EEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 235 CLSGHTLAVTCVKWGG-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 235 ~~~~h~~~v~~~~~~~-~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
...........+++++ ++.| ++-...+.|.+.++........+.........+++.+..
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~------------------- 213 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME------------------- 213 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTT-------------------
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCC-------------------
Confidence 3322222334556654 3444 444556677777765332221122121223444444321
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCC-ceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEE-CCCcEEEEeCC
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT 390 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~ 390 (473)
...+++-... +.|...++.... ........-...+.|+++|++..|..+. ..+.|..+|+.
T Consensus 214 ----------------g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 214 ----------------GTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp ----------------TEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred ----------------CeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 0112222222 455555544321 1112222234578999998766666554 45789999986
Q ss_pred CCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeecc
Q 011978 391 TGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 440 (473)
Q Consensus 391 ~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 440 (473)
.......+.........+++ ..+..+.+-...+.|..+|..+++....+
T Consensus 277 G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 277 GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 54433334434456678888 44555555556778888886666554444
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.76 E-value=0.021 Score=51.45 Aligned_cols=75 Identities=13% Similarity=-0.015 Sum_probs=47.2
Q ss_pred ceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee
Q 011978 362 LVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLK 437 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~ 437 (473)
..+.++++|++..|..+. ..+.|..+|+..........+.......+++.. +..+.+-...+.|..+|..+++..
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 457899998766666554 457899998864333223333445567777753 344445555678888888666543
No 275
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0097 Score=53.57 Aligned_cols=187 Identities=12% Similarity=0.200 Sum_probs=115.7
Q ss_pred eEEEeecCCeEEEEECCCCceeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCce-
Q 011978 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER- 331 (473)
Q Consensus 253 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 331 (473)
.++.....+.+.+||+ +|+.+..+.. ..++.+.+-+...+. +..-+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~-----------------------------g~~~dla 89 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLN-----------------------------GKKVDIA 89 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEET-----------------------------TEEEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccC-----------------------------CceEeEE
Confidence 5666677789999999 8888887753 445666655432210 000111
Q ss_pred EEEecC--CceEEEEeCCCCCCCeeeecC------c-ccceeEEEE--CCC-Cc-EEEEEECCCcEEEEeCC-------C
Q 011978 332 LVSGSD--DFTMFLWEPAVSKQPKTRMTG------H-QQLVNHVYF--SPD-GQ-WVASASFDKSIKLWNGT-------T 391 (473)
Q Consensus 332 l~~~~~--d~~i~iwd~~~~~~~~~~~~~------~-~~~v~~v~~--sp~-g~-~lasgs~d~~v~lwd~~-------~ 391 (473)
+++... ++++.+|++............ . ...+..+|+ +|. ++ +++....+|.+..|++. +
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 344444 678999966432222322211 1 145666777 774 44 67778888999998872 3
Q ss_pred CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC-----CCceeeccc-ccC-CCEEEEEE--eeCCC-EEEE
Q 011978 392 GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR-----TQKLKQDLP-GHA-DEVFAVDW--SPDGE-KVAS 461 (473)
Q Consensus 392 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~-----~~~~~~~~~-~h~-~~i~~l~~--s~d~~-~l~s 461 (473)
.+.++.|... +.+-.+...+...+|+.+-.|..|..++.+ +.+.+..+. ++- ..+-.|+. .++++ +|+.
T Consensus 170 ~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv 248 (355)
T 3amr_A 170 GKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA 248 (355)
T ss_dssp EEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred ceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence 3556676643 467788888888899999998777777755 233443332 222 36777877 56666 5554
Q ss_pred Ee-CCCcEEecc
Q 011978 462 GG-KDRVLKLWM 472 (473)
Q Consensus 462 ~~-~D~~i~~w~ 472 (473)
++ .+++..+|.
T Consensus 249 SsQG~~s~~Vyd 260 (355)
T 3amr_A 249 SSQGNSSYAIYD 260 (355)
T ss_dssp EEGGGTEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 44 667777764
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.74 E-value=0.017 Score=49.83 Aligned_cols=198 Identities=11% Similarity=0.175 Sum_probs=111.1
Q ss_pred ecCccccEEEEEecCC-CeEEE-eecCCeEEEEECCCCceeeeeeccC-ceEEEEEecccceeeeccccCCCcccCCHHH
Q 011978 236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (473)
Q Consensus 236 ~~~h~~~v~~~~~~~~-~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
+.|-...+..++|+++ +.|++ ...++.|...|.. ++.++.+...+ .....+++..+..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~------------------ 82 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ------------------ 82 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE------------------
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE------------------
Confidence 4455567899999975 45554 6678889999987 77777664321 2333444332211
Q ss_pred HHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCC--eeee------cCcccceeEEEECCCCcEEEEEECCCcE
Q 011978 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM------TGHQQLVNHVYFSPDGQWVASASFDKSI 384 (473)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~------~~~~~~v~~v~~sp~g~~lasgs~d~~v 384 (473)
.+++.-.++.+.+++....... .... .........++|+|+++.|.++......
T Consensus 83 ------------------~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~ 144 (255)
T 3qqz_A 83 ------------------FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI 144 (255)
T ss_dssp ------------------EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred ------------------EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc
Confidence 1233233445555544322210 0000 1123446899999998777666655444
Q ss_pred EEEeCC---CCceEEEee-------CCccCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceee--ccc-cc------C
Q 011978 385 KLWNGT---TGKFVAVFR-------GHVGPVYQISWSADSR-LLLSGSKDSTLKVWDIRTQKLKQ--DLP-GH------A 444 (473)
Q Consensus 385 ~lwd~~---~~~~~~~~~-------~h~~~v~~v~~sp~g~-~l~s~s~Dg~i~iwd~~~~~~~~--~~~-~h------~ 444 (473)
.+|... ....+..+. .+...+.+++++|... +++.....+.+.++|.... .+. .+. +. -
T Consensus 145 ~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~ 223 (255)
T 3qqz_A 145 EVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNI 223 (255)
T ss_dssp EEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCC
T ss_pred eEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCccccc
Confidence 555443 111222221 1233568899999654 4555556677888997654 322 333 21 1
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 445 DEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 445 ~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
..--.++|.++|+.+++ ++-+.+..|.
T Consensus 224 ~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 224 KQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp CSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 25578999999985555 6666665553
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.74 E-value=0.0035 Score=64.10 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=69.8
Q ss_pred eEEEEeCCCCCCC-eeeec-CcccceeEEEECCCCcEEEEEECC---CcEEEEeCCCC--ce--EEEeeCCccCEEEEEE
Q 011978 340 TMFLWEPAVSKQP-KTRMT-GHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTG--KF--VAVFRGHVGPVYQISW 410 (473)
Q Consensus 340 ~i~iwd~~~~~~~-~~~~~-~~~~~v~~v~~sp~g~~lasgs~d---~~v~lwd~~~~--~~--~~~~~~h~~~v~~v~~ 410 (473)
.|+.+++...... ..... ........+.|||||++|+..+.+ ..|.++|+.++ +. ........+...++.|
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 5666665443211 11111 222345678999999998876633 36888898875 33 3333344455566666
Q ss_pred ecCCCEEEEEeCC--C--cEEEEECCCCceeec-ccccCC--CEEEEEEeeCCCE-EEEEeCCCcEEec
Q 011978 411 SADSRLLLSGSKD--S--TLKVWDIRTQKLKQD-LPGHAD--EVFAVDWSPDGEK-VASGGKDRVLKLW 471 (473)
Q Consensus 411 sp~g~~l~s~s~D--g--~i~iwd~~~~~~~~~-~~~h~~--~i~~l~~s~d~~~-l~s~~~D~~i~~w 471 (473)
+.++.+++....+ + .|..+|+.+...... +-.|.. .+..+.+ +++. +++...|+..+||
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEE
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEE
Confidence 5444444444443 2 566777764222122 222333 3444444 4444 4566677766665
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.60 E-value=0.038 Score=50.02 Aligned_cols=271 Identities=8% Similarity=-0.032 Sum_probs=133.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCc---eeEE-EcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCc
Q 011978 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (473)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~---~~~~-~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~ 183 (473)
...+.++.|.+++..+++ +.++.|.. ....++ ++.. .......+.++.|.+ + .++.++..+.|+. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCC
Confidence 346899999888887774 45676533 333332 1110 111234688999976 3 4555566675544 222233
Q ss_pred cccccC--CCcCCcEEEEEeceeccCCCCceEEEeeCCCcE-EEEECCCCe-EEEEecCccccEEEEEecCCCeEEEeec
Q 011978 184 PSGNPL--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDA-RIWDVSLRK-CVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (473)
Q Consensus 184 ~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i-~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~l~s~~~ 259 (473)
.-.... ..+...+..+.+.+ +. .++.++.++.+ +-.| .++ -.....+....+..+.+.+++.++..+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~-----~~-~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG-----NG-SAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE-----TT-EEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred CceECccccCCCCCeEEEEEEC-----CC-CEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence 211111 11223455555432 22 33344445544 2222 122 1222234455788888988887766666
Q ss_pred CCeEEEEECCCCceeeee-eccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCC
Q 011978 260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (473)
Q Consensus 260 d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 338 (473)
++.+..-+-..|..-..+ ......+..+.+.++ ..++..+.+
T Consensus 182 ~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~-------------------------------------g~~~~~~~~ 224 (327)
T 2xbg_A 182 RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPD-------------------------------------GRLWMIVNG 224 (327)
T ss_dssp TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTT-------------------------------------SCEEEEETT
T ss_pred CCcEEEEeCCCCCceeECCCCCCCccceeEECCC-------------------------------------CCEEEEeCC
Confidence 666544321112211111 112223334433322 123344445
Q ss_pred ceEEEEeCCCC---CCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee---CCccCEEEEEEec
Q 011978 339 FTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQISWSA 412 (473)
Q Consensus 339 ~~i~iwd~~~~---~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp 412 (473)
+.++..+.... .........+...+.++++.+++.+++.+. ++.+ ++....|+.-..+. .....+.++.|.+
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~ 302 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS 302 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC
Confidence 55555421100 000000001223578899999888777665 6666 44555554333333 1234678899986
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 011978 413 DSRLLLSGSKDSTLKVWDI 431 (473)
Q Consensus 413 ~g~~l~s~s~Dg~i~iwd~ 431 (473)
+++ ++.++.+|.|.-++-
T Consensus 303 ~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 303 PDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TTE-EEEECSTTEEEEECC
T ss_pred CCc-eEEEcCCceEEEEcC
Confidence 655 555667898776653
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.56 E-value=0.0052 Score=61.80 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=47.5
Q ss_pred EEEECCCCCeEEEEe-CCCeEEEEeCCCCceeE--EEcCCCCCEEEEEECCCCCeEEEEe-cC-----CeEEEeeCCCCc
Q 011978 113 SVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGS-KA-----GELQCWDPQTGK 183 (473)
Q Consensus 113 ~~~~sp~~~~lat~s-~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~s~~-~d-----g~i~iwd~~~~~ 183 (473)
++++.++++.++.|+ .+..+.+||..+.+=.. .+.. ...-.+++..++|+.++.|+ .+ ..+.+||+.+.+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 467788999999988 45689999987653111 1111 12224556667899999988 44 468999987765
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.55 E-value=0.059 Score=50.89 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=80.9
Q ss_pred cEEEEEECCC--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCC-----eEEEeeCCCC
Q 011978 110 AVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQTG 182 (473)
Q Consensus 110 ~V~~~~~sp~--~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg-----~i~iwd~~~~ 182 (473)
....++++|+ ...|..+...+.|+.+|..++.... +.........++|+++|+ |+.+...+ .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999995 4455555444899999997765433 333445588999999999 55444321 1333332211
Q ss_pred ccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEe--cCccccEEEEEecCCCe-EEEe-e
Q 011978 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDGV-IYTG-S 258 (473)
Q Consensus 183 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~-l~s~-~ 258 (473)
......+. .-....++++.| ..+..+++-..++.|..+|..++.....+ .+....-..+++++++. |+.+ .
T Consensus 218 ~~~~~~~~-~~~~P~giavd~----~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHP----QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECT----TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeC----CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 10000000 001111222222 02344455556678888888766542211 11122234688888873 5544 4
Q ss_pred cCCeEEEEECC
Q 011978 259 QDCTIKVWETT 269 (473)
Q Consensus 259 ~d~~i~~wd~~ 269 (473)
..+.|+.++..
T Consensus 293 ~~~~I~~~~~d 303 (433)
T 4hw6_A 293 GKHCIYRVDYN 303 (433)
T ss_dssp TTTEEEEEEBC
T ss_pred CCCEEEEEeCC
Confidence 55778877654
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.55 E-value=0.05 Score=51.41 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=79.0
Q ss_pred EEEecCCceEEEEeCCCCCCCeee-ecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCC--CCce--EEEeeCC----
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TGKF--VAVFRGH---- 401 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~--~~~~--~~~~~~h---- 401 (473)
+++...++.|+.++.......... ..+.......++|+|+|++|..+ ...+.|+.++.. ++.. ...+.+.
T Consensus 243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~ 322 (433)
T 4hw6_A 243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP 322 (433)
T ss_dssp EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC
Confidence 334445667777776533210111 11112233469999999955554 456789998765 3322 1122111
Q ss_pred -----------ccCEEEEEE---------ecCCCEEEEEeCCCcEEEEECCCCceeeccccc------------------
Q 011978 402 -----------VGPVYQISW---------SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------------------ 443 (473)
Q Consensus 402 -----------~~~v~~v~~---------sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h------------------ 443 (473)
......+++ .++|.+.++-...+.|+.++. .+... ++.+.
T Consensus 323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~ 400 (433)
T 4hw6_A 323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQAL 400 (433)
T ss_dssp CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCB
T ss_pred ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccE
Confidence 124677999 667777666666778999985 34332 11111
Q ss_pred CCCEEEEEEe-eCCCEEEEEeCCCcEEec
Q 011978 444 ADEVFAVDWS-PDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 444 ~~~i~~l~~s-~d~~~l~s~~~D~~i~~w 471 (473)
-..-..|+++ ++|..+++=...++|+..
T Consensus 401 ~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 401 FNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp CSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 1236789999 677666666667777764
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.50 E-value=0.05 Score=48.92 Aligned_cols=215 Identities=11% Similarity=-0.026 Sum_probs=113.8
Q ss_pred CCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEe-ecCCeEEEEECCCC---ceeeee-eccCceEEEEEecc
Q 011978 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTG-SQDCTIKVWETTQG---KLIREL-KGHGHWVNSLALST 291 (473)
Q Consensus 218 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~-~~d~~i~~wd~~~~---~~~~~~-~~~~~~v~~~~~~~ 291 (473)
....|+..|+........... ......+.|+++ +.|+.+ ...+.|..++.... .....+ .........+++.+
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 345688888877655444332 345678888864 455544 45688888887641 111111 11101112222221
Q ss_pred cceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCC
Q 011978 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~ 371 (473)
. ....+++-...+.|.+.++.... ..............++++|.
T Consensus 87 ~-----------------------------------~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 87 I-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPV 130 (316)
T ss_dssp T-----------------------------------TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETT
T ss_pred c-----------------------------------CCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCC
Confidence 0 11223444556677777754321 12222223346789999996
Q ss_pred CcEEEEEECC--CcEEEEeCCCCceEEEe-eCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeeccc--ccCC
Q 011978 372 GQWVASASFD--KSIKLWNGTTGKFVAVF-RGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLP--GHAD 445 (473)
Q Consensus 372 g~~lasgs~d--~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~--~h~~ 445 (473)
+..|...... +.|...+.. |.....+ .......+.++++|++..|+.+. ..+.|..+|+.......... +...
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~ 209 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 209 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccC
Confidence 6655554432 678888875 3333333 23345688999999877766654 45689999987533221111 1123
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 446 EVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 446 ~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
...++++. .+..+++-...+.|..+
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 35677774 34444555455555543
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.42 E-value=0.05 Score=46.92 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=69.5
Q ss_pred EcCCCCCEEEEEECCCCCeEEE-EecCCeEEEeeCCCCcccccc-CCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEE
Q 011978 146 CTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (473)
Q Consensus 146 ~~~~~~~v~~l~~s~dg~~l~s-~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~ 223 (473)
+.+-...+..++|+|+++.|++ ...++.|...|.+ ++..... +.+ .....++++.+ ++..+++.-.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-----~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-----DNQFVISDERDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-----TTEEEEEETTTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-----CCEEEEEECCCCcEE
Confidence 3455567999999998776665 6667889999987 6544332 222 23456666543 333445545667788
Q ss_pred EEECCCCeE---EEEe------cCccccEEEEEecCCC-eEEEeecCCeEEEEEC
Q 011978 224 IWDVSLRKC---VICL------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWET 268 (473)
Q Consensus 224 iwd~~~~~~---~~~~------~~h~~~v~~~~~~~~~-~l~s~~~d~~i~~wd~ 268 (473)
++++..... +... ...+.....++|++++ .|+++.......+|.+
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 887654331 1111 1234456889998876 5666655444445544
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.31 E-value=0.088 Score=47.34 Aligned_cols=137 Identities=7% Similarity=-0.031 Sum_probs=77.2
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
+++-...+.|.+.++.... ..............++++|.+.+|..... .+.|...+.................+.++
T Consensus 94 y~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 94 YWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 3444455677777764322 22222233456789999997666655542 56788888764332222333345678999
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 410 WSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 410 ~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
|+|++..|..+. ..+.|..+|+........+.+......++++.. +..+.+-...+.|..
T Consensus 173 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 173 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 999777666654 567899999875333222222233456666643 233344334445543
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.081 Score=49.91 Aligned_cols=139 Identities=6% Similarity=0.067 Sum_probs=74.7
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeCCC--Cce--EEEeeCC-----
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTT--GKF--VAVFRGH----- 401 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~--~~~--~~~~~~h----- 401 (473)
+++-..++.|..++............+.....+.++|+|+|++|... ...+.|..++... ++. ...+.+.
T Consensus 241 yv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g 320 (430)
T 3tc9_A 241 YFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKD 320 (430)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCC
Confidence 44555567788887653321111111222457789999999955554 4567899887652 222 1222111
Q ss_pred ----------ccCEE-EEEEe--------cCCCEEEEEeCCCcEEEEECCCCceeecc-------cc----------cCC
Q 011978 402 ----------VGPVY-QISWS--------ADSRLLLSGSKDSTLKVWDIRTQKLKQDL-------PG----------HAD 445 (473)
Q Consensus 402 ----------~~~v~-~v~~s--------p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-------~~----------h~~ 445 (473)
..... .++.. ++|.+.++-...+.|+.++. .++..... .+ .-.
T Consensus 321 ~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~ 399 (430)
T 3tc9_A 321 WVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFN 399 (430)
T ss_dssp CBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCS
T ss_pred CCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeC
Confidence 11223 45553 33555555555677888874 34332211 11 012
Q ss_pred CEEEEEEeeC-CCEEEEEeCCCcEEec
Q 011978 446 EVFAVDWSPD-GEKVASGGKDRVLKLW 471 (473)
Q Consensus 446 ~i~~l~~s~d-~~~l~s~~~D~~i~~w 471 (473)
.-..++++|+ +..+++-...++|+..
T Consensus 400 ~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 400 HPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 4678999995 5555555566777654
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.29 E-value=0.093 Score=47.14 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=121.3
Q ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCC---ccccccCCCcCCcEEEEEecee
Q 011978 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV 204 (473)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~ 204 (473)
...|+..|+.+........ .......++|++++..|+.+. ..+.|+.+++... ......+...-....++++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3568888888765443333 334578999998766666554 5689999998751 1111111111122345554321
Q ss_pred ccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeecC--CeEEEEECCCCceeeee-ecc
Q 011978 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQD--CTIKVWETTQGKLIREL-KGH 280 (473)
Q Consensus 205 ~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d--~~i~~wd~~~~~~~~~~-~~~ 280 (473)
....+++-...+.|.+.|...................+++++ ++.++.+... +.|...+.. |.....+ ...
T Consensus 88 ----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~ 162 (316)
T 1ijq_A 88 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN 162 (316)
T ss_dssp ----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSS
T ss_pred ----CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECC
Confidence 223455556678888888875443333333334567888886 5666655543 577777754 3322222 112
Q ss_pred CceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeec--C
Q 011978 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--G 358 (473)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~ 358 (473)
-..-+.++++++. ...+++-+..+.|..+|...... ..... .
T Consensus 163 ~~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~ 206 (316)
T 1ijq_A 163 IQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KTILEDEK 206 (316)
T ss_dssp CSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCSC-EEEEECTT
T ss_pred CCCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCce-EEEeecCC
Confidence 2233445544321 11234444556777777653221 11111 1
Q ss_pred cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee
Q 011978 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (473)
Q Consensus 359 ~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~ 399 (473)
.......+++. .+.+..+-...+.|..+|..+|+.+..+.
T Consensus 207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 12345677775 35555555566788888887776655554
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.25 E-value=0.006 Score=61.59 Aligned_cols=79 Identities=10% Similarity=0.001 Sum_probs=47.8
Q ss_pred ceeEEEECCCCcEEEEE-ECCCcEEEEeCCCCceEEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 362 LVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasg-s~d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
..+.|+|+|++..|..+ +..+.|..+|+........+. ........|++..+ .++++....+.|..+|..+++...
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 45678999876555544 456789999986433322222 11223345555443 444555567789999988777666
Q ss_pred ccc
Q 011978 439 DLP 441 (473)
Q Consensus 439 ~~~ 441 (473)
.+.
T Consensus 620 ~i~ 622 (699)
T 1n7d_A 620 LLA 622 (699)
T ss_dssp CCC
T ss_pred Eee
Confidence 554
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.17 E-value=0.13 Score=46.41 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=51.9
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCC-----CCceEEEee-CCc-cCEEEEEE--ecCCC-EEEEEe-CCCcEEEEE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGT-----TGKFVAVFR-GHV-GPVYQISW--SADSR-LLLSGS-KDSTLKVWD 430 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~-----~~~~~~~~~-~h~-~~v~~v~~--sp~g~-~l~s~s-~Dg~i~iwd 430 (473)
.+..+.+.+....|..+-.|..|..++.+ +++.+..+. ++. .-+..+++ .++++ +|+++| .+++..+||
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 35567778888888999888766666744 344555542 222 35777877 45665 566555 577899999
Q ss_pred CC-CCceeecc
Q 011978 431 IR-TQKLKQDL 440 (473)
Q Consensus 431 ~~-~~~~~~~~ 440 (473)
.. +.+.+..+
T Consensus 261 r~~~~~~vg~f 271 (355)
T 3amr_A 261 RQGKNKYVADF 271 (355)
T ss_dssp SSTTCCEEEEE
T ss_pred CCCCCcEEEEE
Confidence 96 55555444
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.15 E-value=0.12 Score=46.02 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred eeEEEECCCCcEEEEEECC-CcEEEEeCCCCceEEEee------CCccCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011978 363 VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFR------GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRT 433 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d-~~v~lwd~~~~~~~~~~~------~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~ 433 (473)
.+.+++.++|+.-++++.- +.|...+.... .+..+. ......+.++++|+|+.|++...+|.+..+|+..
T Consensus 139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 6678888888888888877 77777776533 222221 1122367899999999888887799999999874
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.08 E-value=0.19 Score=46.84 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=118.1
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEe-ecCCeEEEEECCCCc----eeeeeeccCceEEE
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGK----LIRELKGHGHWVNS 286 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~ 286 (473)
++.-+....|+..|+.......... ....+..++|++ ++.|+.+ ...+.|+.+++.... ....+.........
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 3334445778888887655443333 345677888886 4555554 456778888765421 11111111112233
Q ss_pred EEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEE
Q 011978 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (473)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v 366 (473)
+++.+. ....+++-...+.|.+.++.... ..............|
T Consensus 164 lavD~~-----------------------------------~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~i 207 (400)
T 3p5b_L 164 LAVDWI-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAI 207 (400)
T ss_dssp EEEETT-----------------------------------TTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEE
T ss_pred EEEEec-----------------------------------CCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceE
Confidence 333221 11223444455666666654322 222222233457899
Q ss_pred EECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc-
Q 011978 367 YFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG- 442 (473)
Q Consensus 367 ~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~- 442 (473)
+++|.+.+|..... .+.|...++................+.|+++|++..|+.+. ..+.|..+|+........+..
T Consensus 208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 99997666655542 36788888764443333343445789999999887777664 456899999875433222221
Q ss_pred -cCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 443 -HADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 443 -h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
....-.+++.. .+..+.+-...+.|..+
T Consensus 288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp STTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred CCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 22334566663 23344444444555543
No 291
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.07 E-value=0.44 Score=50.85 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=47.4
Q ss_pred cccEEEEEECCC------CCeEEEEeC-CCeEEEEeCCCCceeEEEc-CCCCCEEEEEEC--CCCCeEEEEecCCeEEEe
Q 011978 108 TEAVLSVAFSPD------GRQLASGSG-DTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCW 177 (473)
Q Consensus 108 ~~~V~~~~~sp~------~~~lat~s~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s--~dg~~l~s~~~dg~i~iw 177 (473)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+-.++.... +-+....++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999864 368999996 9999999998765543321 111233343332 233578888899997655
Q ss_pred eC
Q 011978 178 DP 179 (473)
Q Consensus 178 d~ 179 (473)
.+
T Consensus 633 ~~ 634 (1158)
T 3ei3_A 633 GL 634 (1158)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.06 E-value=0.29 Score=48.54 Aligned_cols=343 Identities=11% Similarity=0.028 Sum_probs=169.9
Q ss_pred cEEEEEECCCCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEec--CCeEEEeeCCCCcccc
Q 011978 110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG 186 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~--dg~i~iwd~~~~~~~~ 186 (473)
....+++.+.+..|..+ ...+.|.+.++.+..........-..-..+++.|....|+.... .+.|...++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~- 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT- 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-
Confidence 45678898877766554 45688999998765433223233345689999986666665542 467877777543321
Q ss_pred ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEE
Q 011978 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (473)
Q Consensus 187 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 266 (473)
... ..-...+++++.+. ....+++-...+.|...|+...... .+.........+++..+.++++-...+.|...
T Consensus 160 ~l~-~~~~~P~GlalD~~----~~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 160 TLV-PNVGRANGLTIDYA----KRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERA 233 (628)
T ss_dssp EEE-CSCSSEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EEE-CCCCCcceEEEccc----cCEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEEECCEEEEecCCCCEEEEE
Confidence 111 22345567766542 1234445456677888887653321 22222223446666654444455567889999
Q ss_pred ECCCCceeeeeeccCceEEEEEe-ccccee--eecccc-CCCcccC--CHHHHHH-HHHhhh----hcccCCC-CceEEE
Q 011978 267 ETTQGKLIRELKGHGHWVNSLAL-STEYAL--RTGAFD-HTGKQYS--SPEEMKK-AALERY----NKIKGNA-PERLVS 334 (473)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~~-~~~~~~~--~~~~~~~-~~~~~~----~~~~~~~-~~~l~~ 334 (473)
|..+|+....+.........+.+ ++.... ..+... +....+. .+..... .....+ ....... ...++.
T Consensus 234 dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~ 313 (628)
T 4a0p_A 234 NKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLF 313 (628)
T ss_dssp ETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEE
T ss_pred ECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeee
Confidence 98777655544432222222221 111000 000000 0000000 0000000 000000 0000000 112222
Q ss_pred ecCCceEEEEeCCCCCCCeeeec-CcccceeEEEECCCCcEEEEEE-CCCcEEEEeCCCCceEEEeeC------CccCEE
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRG------HVGPVY 406 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~~~~~~~~~------h~~~v~ 406 (473)
+ ....|+-..+.........+. ..-..+..++|++....|..+. ..+.|+.++.........+.. ....+.
T Consensus 314 s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~ 392 (628)
T 4a0p_A 314 S-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY 392 (628)
T ss_dssp E-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE
T ss_pred e-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc
Confidence 2 223344333322211111111 1224577899999766666554 457788888764433333322 234688
Q ss_pred EEEEecCCCEEE-EEeCCCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEE
Q 011978 407 QISWSADSRLLL-SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 460 (473)
Q Consensus 407 ~v~~sp~g~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~ 460 (473)
.+++...++.|. +-+..+.|.+.++........+........++++.|...+|.
T Consensus 393 glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly 447 (628)
T 4a0p_A 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMY 447 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred eEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEE
Confidence 999998866555 555677899998864322222222335678888888433443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.93 E-value=0.44 Score=48.55 Aligned_cols=216 Identities=12% Similarity=-0.010 Sum_probs=112.1
Q ss_pred EeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEE-EeecCCeEEEEECCCCc----eeeeeeccCceEEEEE
Q 011978 215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY-TGSQDCTIKVWETTQGK----LIRELKGHGHWVNSLA 288 (473)
Q Consensus 215 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~-s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~ 288 (473)
..+....|+..++..........+ ...+..++|+. ++.|+ +-...+.|+.+++.... ....+.........++
T Consensus 399 l~an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 399 FFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp EEECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred ccccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 334456677777765544333332 34566778875 45554 44455677777765321 1111110111112222
Q ss_pred ecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEE
Q 011978 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~ 368 (473)
+... ....+++-...+.|.+.++.... ..............|++
T Consensus 478 vD~~-----------------------------------~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaV 521 (791)
T 3m0c_C 478 VDWI-----------------------------------HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVV 521 (791)
T ss_dssp EETT-----------------------------------TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEE
T ss_pred eeec-----------------------------------CCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEE
Confidence 2211 11234455556677777764322 12222223345789999
Q ss_pred CCCCcEEEEEEC-C-CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeecccc--c
Q 011978 369 SPDGQWVASASF-D-KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG--H 443 (473)
Q Consensus 369 sp~g~~lasgs~-d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~--h 443 (473)
+|.+.+|..... . +.|...++........+.......+.|++++.+..|+.+. ..+.|...++........+.+ .
T Consensus 522 Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred ecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 997666655543 2 6788888865444344444446789999998777776664 456799999875443332222 1
Q ss_pred CCCEEEEEEeeCCCEEEEEe-CCCcEE
Q 011978 444 ADEVFAVDWSPDGEKVASGG-KDRVLK 469 (473)
Q Consensus 444 ~~~i~~l~~s~d~~~l~s~~-~D~~i~ 469 (473)
-....+|++. +.+|..+. ..+.|.
T Consensus 602 l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 602 LAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2234566653 33444443 334443
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.92 E-value=0.24 Score=45.25 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=37.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCce------eecccccCCCEEEEEEeeCCCEEEEEe
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~------~~~~~~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
....++| .+|.++++.-..+.|...++..... ...+-.....+..+++.|||..+++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 4567787 5676666655666777777654321 122212235789999999998777654
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.89 E-value=0.28 Score=45.66 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=131.4
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEe-cCCeEEEeeCCCCc---cccccCCCcCCcEE
Q 011978 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGK---PSGNPLSGHKKWIT 197 (473)
Q Consensus 122 ~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~ 197 (473)
+|+.+ ....|+..++.+........ ....+..|+|++.+..|+... ..+.|+.+++.... ..............
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 44443 34688988987664433333 345688999998766666554 46789989886521 11111222223445
Q ss_pred EEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecC-CCeEEEeec--CCeEEEEECCCCcee
Q 011978 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLI 274 (473)
Q Consensus 198 ~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~--d~~i~~wd~~~~~~~ 274 (473)
++++.+. ....+++-...+.|.+.++........+.........+++++ ++.|+.... .+.|...++......
T Consensus 163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 5555431 223455556677888888876544443433344567888886 456665543 367777776532222
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCee
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 354 (473)
..+...-..-+.+++++.. ....++-.....|...|...... ..
T Consensus 239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~~-~~ 282 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGNR-KT 282 (400)
T ss_dssp EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCCC-EE
T ss_pred EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCcc-EE
Confidence 2122222334455554321 11233334455666666543222 12
Q ss_pred eecC--cccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 355 ~~~~--~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
.... .......+++. .+.++.+-...+.|..+|..+|+.+..+........+++.
T Consensus 283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 1111 12334566663 3445555556678998998788776666544444555543
No 296
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.082 Score=48.73 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=74.5
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------------eEEEeeC------CccCEEEEEEecC---CCEEEEE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------------FVAVFRG------HVGPVYQISWSAD---SRLLLSG 420 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------------~~~~~~~------h~~~v~~v~~sp~---g~~l~s~ 420 (473)
.+..+..+|+|++||..+. ..|.|-.+..+. ....+.- ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5788999999999999865 578888776321 1223322 2467999999995 4589999
Q ss_pred eCCCcEEEEECCCCc--ee--------ecccccCCCEEEEEEeeCCCEEEEE--eCCCcEE
Q 011978 421 SKDSTLKVWDIRTQK--LK--------QDLPGHADEVFAVDWSPDGEKVASG--GKDRVLK 469 (473)
Q Consensus 421 s~Dg~i~iwd~~~~~--~~--------~~~~~h~~~i~~l~~s~d~~~l~s~--~~D~~i~ 469 (473)
..|+.|++||+.... .. ..+......|.+++|.+++-.|... +.+|-|.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 999999999997521 11 0112233678899999988766554 4666654
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.88 E-value=0.066 Score=47.77 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=92.2
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecC-----c-ccceeEEEE---CCCCcEEEEEE-------------CCCcEEEEeC
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTG-----H-QQLVNHVYF---SPDGQWVASAS-------------FDKSIKLWNG 389 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~-~~~v~~v~~---sp~g~~lasgs-------------~d~~v~lwd~ 389 (473)
+++.-..++|..|++.........+.+ . ...+..|.+ .|+++++++.. .++.|..+|+
T Consensus 28 ~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl 107 (334)
T 2p9w_A 28 YQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNL 107 (334)
T ss_dssp EEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEES
T ss_pred EEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcC
Confidence 445557899999987533222222221 1 124578999 68988888644 2677999999
Q ss_pred C---CCceEEEee--CC-----------ccCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeec---c--cccCCCE
Q 011978 390 T---TGKFVAVFR--GH-----------VGPVYQISWSADSRLLLSGSKD-STLKVWDIRTQKLKQD---L--PGHADEV 447 (473)
Q Consensus 390 ~---~~~~~~~~~--~h-----------~~~v~~v~~sp~g~~l~s~s~D-g~i~iwd~~~~~~~~~---~--~~h~~~i 447 (473)
. +++.+.... .. ....++++..++|+..++++.- +.|...+........- . .......
T Consensus 108 ~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~ 187 (334)
T 2p9w_A 108 PLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGY 187 (334)
T ss_dssp SCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSC
T ss_pred CcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCc
Confidence 8 777654433 11 1358899999999999988887 8777777654322110 0 1111235
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEec
Q 011978 448 FAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 448 ~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+.++++|||+.|+....++.|.-+
T Consensus 188 nGIv~~pdg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 188 SGITFDPHSNKLIAFGGPRALTAF 211 (334)
T ss_dssp SEEEEETTTTEEEEESSSSSEEEE
T ss_pred ceEEEeCCCCEEEEEcCCCeEEEE
Confidence 689999999999888778877654
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.74 E-value=0.62 Score=47.47 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=85.6
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEE-ecCCeEEEeeCCCCcc---ccccCCCcCCcEEEEEece
Q 011978 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP 203 (473)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~ 203 (473)
....|+..++.......... ....+..|+|.+.+..|+.. ...+.|+.+++..... ....+........++++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 34568888877654333333 34567889999865556544 4557898888864211 1111221222334555443
Q ss_pred eccCCCCceEEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCC-CeEEEeec--CCeEEEEECCCCceeeeeecc
Q 011978 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQ--DCTIKVWETTQGKLIRELKGH 280 (473)
Q Consensus 204 ~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~ 280 (473)
. ....+++-...+.|.+.++........+.........|++++. +.|+.... .+.|...++........+...
T Consensus 481 ~----~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 481 I----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp T----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred c----CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 2 1245566667788999988765443333334445778888875 66666543 267777776533222222222
Q ss_pred CceEEEEEec
Q 011978 281 GHWVNSLALS 290 (473)
Q Consensus 281 ~~~v~~~~~~ 290 (473)
-.+-..+++.
T Consensus 557 l~~P~GLavD 566 (791)
T 3m0c_C 557 IQWPNGITLD 566 (791)
T ss_dssp CSCEEEEEEE
T ss_pred CCCceEEEEe
Confidence 2344455544
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.5 Score=45.02 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=86.3
Q ss_pred cEEEEEECC-CCCeEEEEe-CCCeEEEEeCCCCceeEEEcCC---CCCEEEEEE-------CCCCCeEEEEecCC-----
Q 011978 110 AVLSVAFSP-DGRQLASGS-GDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAW-------SADGKHLVSGSKAG----- 172 (473)
Q Consensus 110 ~V~~~~~sp-~~~~lat~s-~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~-------s~dg~~l~s~~~dg----- 172 (473)
....|+|+| +...|+.+. ..+.|++.|.+++......... -.....++| +++|+.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 455555554 4467999998887654433322 234789999 99999777776554
Q ss_pred --eEEEeeCCC-Ccccc----ccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECC-------CCeE------
Q 011978 173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------ 232 (473)
Q Consensus 173 --~i~iwd~~~-~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~-------~~~~------ 232 (473)
.|.+.+... +.... ..+... ....+++..| .....+++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHP----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECT----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcC----CCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266665433 22110 001000 0112222222 123455566677889999986 4432
Q ss_pred --------EEEecCccccEEEEEecCCCe-EEEe-ecCCeEEEEEC
Q 011978 233 --------VICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWET 268 (473)
Q Consensus 233 --------~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~i~~wd~ 268 (473)
+... +....-..++|++++. |+.+ ...+.|+.++.
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1222 2223456789998874 4544 45567777553
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.63 E-value=0.012 Score=59.40 Aligned_cols=137 Identities=13% Similarity=-0.029 Sum_probs=70.4
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC-C-CcEEEEeCCCCceEEEeeCCccCEEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-D-KSIKLWNGTTGKFVAVFRGHVGPVYQISW 410 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~-d-~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 410 (473)
++-...+.|.+.++.... ..............|+++|.+.+|+.... . +.|..+++................+.|+|
T Consensus 469 ~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 547 (699)
T ss_dssp ECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred EEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence 333445667777654321 11112222234677899997665554432 2 67877776533222222222345678999
Q ss_pred ecCCCEEEEE-eCCCcEEEEECCCCceeeccc--ccCCCEEEEEEeeCCCEEEEEeCCCcEEec
Q 011978 411 SADSRLLLSG-SKDSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLW 471 (473)
Q Consensus 411 sp~g~~l~s~-s~Dg~i~iwd~~~~~~~~~~~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~~w 471 (473)
+|++..|+.+ +..+.|..+|+........+. +......+|++..+ ..+++....+.|..+
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred eccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 9976655544 456789999987533222221 11122234455433 344444445566554
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.60 E-value=0.31 Score=44.97 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=89.5
Q ss_pred CCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCC----CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCcccc------
Q 011978 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG------ 186 (473)
Q Consensus 117 sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~----~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~------ 186 (473)
..+|..++.+. ++.||.-++........+... -..|..+..||+|++|+..+. ..|.+-.+-.+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 45666666654 478888888754433333221 225778999999999888754 577776655221100
Q ss_pred -------ccC----CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCC--eEEEEec---------CccccEE
Q 011978 187 -------NPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAVT 244 (473)
Q Consensus 187 -------~~~----~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~v~ 244 (473)
..+ ......|..+.|+|...+ +..+++-..|+.|++||+... +.. .+. .....|.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~--ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR--DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGG--GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCC--CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 000 012467999999997764 457899999999999999752 111 222 2335678
Q ss_pred EEEecCCCe-EEEee--cCCeEE
Q 011978 245 CVKWGGDGV-IYTGS--QDCTIK 264 (473)
Q Consensus 245 ~~~~~~~~~-l~s~~--~d~~i~ 264 (473)
+++|.+++. |+..+ ..|.|+
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEE
Confidence 888888763 55533 556654
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.39 E-value=0.55 Score=42.65 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred cceeEEEECCCCcEEEEEEC-----------------CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEe-C
Q 011978 361 QLVNHVYFSPDGQWVASASF-----------------DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGS-K 422 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~-----------------d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~ 422 (473)
...+.+++.++|++.++... .|.|.-+|. ++.. .+...-..-+.++||||++.|+.+. .
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence 45788999999998887641 234555554 3322 2222334678999999998877665 5
Q ss_pred CCcEEEEECCC-Cce--eecccccCCCEEEEEEee-CCCEEEEEeCC
Q 011978 423 DSTLKVWDIRT-QKL--KQDLPGHADEVFAVDWSP-DGEKVASGGKD 465 (473)
Q Consensus 423 Dg~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~s~-d~~~l~s~~~D 465 (473)
.+.|+.|++.. ++. ...+. .....-.++..+ +|++.+++..+
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 67899999863 322 11221 123345677787 48776665533
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.18 E-value=1.1 Score=44.23 Aligned_cols=102 Identities=8% Similarity=0.011 Sum_probs=59.5
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC--CCcEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~--d~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
.++-+..+.|.+.++.... ........-...+.|++.|...+|..... ...|...++................+.|+
T Consensus 407 Y~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Gla 485 (619)
T 3s94_A 407 YWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLA 485 (619)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence 3444455666666654332 11222223356789999997444444432 35676666653322223333456788999
Q ss_pred EecCCCEEEEEeC-CCcEEEEECCCC
Q 011978 410 WSADSRLLLSGSK-DSTLKVWDIRTQ 434 (473)
Q Consensus 410 ~sp~g~~l~s~s~-Dg~i~iwd~~~~ 434 (473)
+++++..|+.+.. .+.|..+++...
T Consensus 486 lD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 486 LDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EcccCCEEEEEECCCCEEEEEecCCC
Confidence 9997777776654 467888888654
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=1.3 Score=42.11 Aligned_cols=236 Identities=7% Similarity=0.052 Sum_probs=123.7
Q ss_pred cEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEecC---ccccEEEEEe-------cCCCe-EEEeecCC--
Q 011978 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKW-------GGDGV-IYTGSQDC-- 261 (473)
Q Consensus 195 ~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~-l~s~~~d~-- 261 (473)
....+++.|.. ....+++....+.|++.|+..+........ .......++| ++++. |+.+...+
T Consensus 140 ~p~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 34566666520 123455544456788899888766554432 2235788999 88774 66665443
Q ss_pred -----eEEEEECCC-Ccee-----eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCc
Q 011978 262 -----TIKVWETTQ-GKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (473)
Q Consensus 262 -----~i~~wd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
.+.+.+... +... ..+..- .....+++++. ...
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-----------------------------------~g~ 260 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-----------------------------------NGE 260 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-----------------------------------TCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-----------------------------------CCe
Confidence 255555332 2221 011000 00011111110 123
Q ss_pred eEEEecCCceEEEEeCC-------CCCC-----C-----eee--ecCcccceeEEEECCCCcEEEEE-ECCCcEEEEeC-
Q 011978 331 RLVSGSDDFTMFLWEPA-------VSKQ-----P-----KTR--MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNG- 389 (473)
Q Consensus 331 ~l~~~~~d~~i~iwd~~-------~~~~-----~-----~~~--~~~~~~~v~~v~~sp~g~~lasg-s~d~~v~lwd~- 389 (473)
.+++...++.+..+|+. .... + ... ..+.......++|+|+|++|..+ +..+.|+.++.
T Consensus 261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 45566677788888875 2222 0 111 11223456789999999965554 45678888654
Q ss_pred -CCCce--EEEeeCC---c------------cCEE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCCceeeccccc
Q 011978 390 -TTGKF--VAVFRGH---V------------GPVY-QISWS-------ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 443 (473)
Q Consensus 390 -~~~~~--~~~~~~h---~------------~~v~-~v~~s-------p~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~h 443 (473)
..+.. ...+.+. . .... .++.. ++|.+.++-.....|+.++. .+.. .++.|.
T Consensus 341 g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~ 418 (496)
T 3kya_A 341 EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGR 418 (496)
T ss_dssp TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEES
T ss_pred CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecc
Confidence 33322 1222221 1 1234 45554 45666666566778999884 4432 222211
Q ss_pred ------------------------CCCEEEEEEeeC-CCEEEEEeCCCcEEec
Q 011978 444 ------------------------ADEVFAVDWSPD-GEKVASGGKDRVLKLW 471 (473)
Q Consensus 444 ------------------------~~~i~~l~~s~d-~~~l~s~~~D~~i~~w 471 (473)
-..-..|+++++ |..+++=...++|+.+
T Consensus 419 g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 419 GASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp CTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 123568999997 6666666667788765
No 305
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.23 Score=44.78 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=68.9
Q ss_pred CeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEe-eCCCcEEEEECCCCeEEEEecC---
Q 011978 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG--- 238 (473)
Q Consensus 163 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~-s~dg~i~iwd~~~~~~~~~~~~--- 238 (473)
..++.++.||.|.-.|..+|+...........++.... .+. ...++..++.. +.||.+..+|..++.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47889999999999999998865433222111111110 000 00122233333 6899999999888755433321
Q ss_pred -ccccEEE-----E----EecCCCeEEEeecCCeEEEEECCCCceeeeeec
Q 011978 239 -HTLAVTC-----V----KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (473)
Q Consensus 239 -h~~~v~~-----~----~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 279 (473)
...++.. + ..+.++.+++|+.++.+...|..+|+.+..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1111111 0 001467899999999999999999999887753
No 306
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.71 E-value=0.087 Score=43.84 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=62.8
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCce------EEEee--CCccCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF------VAVFR--GHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR 432 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~------~~~~~--~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~ 432 (473)
..+..++|+|+|.+.+. .+|.++-.+..+.+. -..+- +-.. -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46789999999997777 667777666654221 01110 1111 367889999998887 56988878753
Q ss_pred CCcee------ecc-cccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 433 TQKLK------QDL-PGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 433 ~~~~~------~~~-~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
+.... ..+ .+-=..+..|.|.|+|...+.. |+.+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 31110 011 1111467899999999877666 6654
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.65 E-value=1.1 Score=39.80 Aligned_cols=246 Identities=10% Similarity=0.135 Sum_probs=132.8
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
.-.+|..+.+|--. ..++.|+|++++.++..+.-.+ .|.-=.|-.+ +.|+-.+ +..|+-|++.........+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 34578888777655 5789999999998877665433 4555556543 3444333 46899999865322221222221
Q ss_pred C--cEEEEEeceeccCCCCceEEEee-------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEE-eec-
Q 011978 194 K--WITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-GSQ- 259 (473)
Q Consensus 194 ~--~v~~i~~~~~~~~~~~~~~~s~s-------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s-~~~- 259 (473)
. ...=+.+.. +.+..+++..+ -.|.+.+|..+.+. -+.+.||...-..+...++. .|++ +..
T Consensus 148 ~L~~~QIInY~~---d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 148 SLAGCQIINYRT---DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGTTCEEEEEEE---CTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hcccceEEEEEE---CCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 1 111111111 22333443221 23678888876544 44567886554444333221 2222 221
Q ss_pred --CCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEec
Q 011978 260 --DCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (473)
Q Consensus 260 --d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 336 (473)
.+.+.+-++.... -...+ ......+.+.|
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f---~kk~vdi~fpp--------------------------------------------- 255 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPP--------------------------------------------- 255 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCC---CCEEEEECCCT---------------------------------------------
T ss_pred CCCcEEEEEEcCCCCCCCCCc---ccccceeeCCc---------------------------------------------
Confidence 1344444432110 00000 00000000000
Q ss_pred CCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCE
Q 011978 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRL 416 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 416 (473)
....+-.-++.+|+....+..-+.-|.+++||++++.++..-+-...+|..-+-+....-
T Consensus 256 --------------------ea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~G 315 (365)
T 2xzh_A 256 --------------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 315 (365)
T ss_dssp --------------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTE
T ss_pred --------------------cccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCc
Confidence 011223456778888888888899999999999999998887766777776666555455
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 011978 417 LLSGSKDSTLKVWDIRTQK 435 (473)
Q Consensus 417 l~s~s~Dg~i~iwd~~~~~ 435 (473)
++.....|.|.--.+....
T Consensus 316 i~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 316 IIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEETTCEEEEEEECTTT
T ss_pred EEEEcCCCEEEEEEECccc
Confidence 5556677877666665543
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.64 E-value=2.9 Score=44.63 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=62.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCEEEEEECCC------CCeEEEEec-CCeEEEeeCCC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQT 181 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~d------g~~l~s~~~-dg~i~iwd~~~ 181 (473)
.|...+.+. .+++.++ ++.+.++++..+... ..-..-...|.|+++.|. ++.++.|.. |++++++++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 455555432 3555554 567777777654211 111123567999999863 368899986 99999999976
Q ss_pred Cccccc-cCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEEC
Q 011978 182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (473)
Q Consensus 182 ~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~ 227 (473)
.+.... .+. ......++..... ....++..|-.||.+.-+.+
T Consensus 592 l~~~~~~~L~-~~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 592 FELLHKEMLG-GEIIPRSILMTTF---ESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CCEEEEEECC-SSCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEE
T ss_pred CCeEEEEECC-CCCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEE
Confidence 543321 111 1122333332221 12245677888888765544
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.52 E-value=0.23 Score=45.30 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=61.1
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCce--EEEee---CCccCEEEEEEecC---CCEEEEEeC-C-----CcEE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFR---GHVGPVYQISWSAD---SRLLLSGSK-D-----STLK 427 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~--~~~~~---~h~~~v~~v~~sp~---g~~l~s~s~-D-----g~i~ 427 (473)
....++|.|+|+++++ ..++.|++++ .++. +..+. ........++|+|+ +..|..+.. + +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4678999999996555 5669999998 4442 22111 12356889999998 554444432 2 5688
Q ss_pred EEECCCCc------eeeccc---ccCCCEEEEEEeeCCCEEEEEe
Q 011978 428 VWDIRTQK------LKQDLP---GHADEVFAVDWSPDGEKVASGG 463 (473)
Q Consensus 428 iwd~~~~~------~~~~~~---~h~~~i~~l~~s~d~~~l~s~~ 463 (473)
.|+....+ ....++ +.......+.|.|||..+++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88876431 112233 1111235789999997777654
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.42 E-value=1.3 Score=39.05 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCcEEEEEECC-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce--
Q 011978 371 DGQWVASASFD-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL-- 436 (473)
Q Consensus 371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~-- 436 (473)
++++++.|+.+ ..+.+||..+.+....- .........+. .++++++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 67788887754 45889998877654331 11111112222 266777777654 4689999987543
Q ss_pred eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 437 KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 437 ~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+..++.....-..+ .-+++.++.||.++
T Consensus 237 ~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 237 VTSMTTPRCYVGAT--VLRGRLYAIAGYDG 264 (301)
T ss_dssp ECCCSSCCBSCEEE--EETTEEEEECCBCS
T ss_pred CCCCCCcccceeEE--EECCEEEEEcCcCC
Confidence 22232211111222 23677778887653
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.41 E-value=0.51 Score=42.89 Aligned_cols=132 Identities=10% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCceEEEEeCCCCCCCe--eeecC-----cccceeEEEECC--CCc--EEEEEEC--CCcEEEEeCCCC--c--eEEEee
Q 011978 337 DDFTMFLWEPAVSKQPK--TRMTG-----HQQLVNHVYFSP--DGQ--WVASASF--DKSIKLWNGTTG--K--FVAVFR 399 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~--~~~~~-----~~~~v~~v~~sp--~g~--~lasgs~--d~~v~lwd~~~~--~--~~~~~~ 399 (473)
.+|.|.++|+....... ..+.+ ..-....+.+.+ ++. ++++-.. +.+|.+|++... . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 58889999976332211 12222 122455666655 453 4444333 467888876543 2 233444
Q ss_pred CC-ccCEEEEEEecCCCEEEEEeC-----------------CCcEEEEECCCCceeecccccCCCEEEEEEeeCCCEEEE
Q 011978 400 GH-VGPVYQISWSADSRLLLSGSK-----------------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS 461 (473)
Q Consensus 400 ~h-~~~v~~v~~sp~g~~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s 461 (473)
+. ....+++.+.++|.+.++... .|.|+-+|. ++.. .+...-..-+.++||||++.|..
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEE
Confidence 32 246899999999998887641 244555554 3222 22222345689999999988766
Q ss_pred Ee-CCCcEEec
Q 011978 462 GG-KDRVLKLW 471 (473)
Q Consensus 462 ~~-~D~~i~~w 471 (473)
+. ..++|..|
T Consensus 238 adt~~~~I~~~ 248 (355)
T 3sre_A 238 AELLAHKIHVY 248 (355)
T ss_dssp EEGGGTEEEEE
T ss_pred EeCCCCeEEEE
Confidence 55 45666655
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.34 E-value=1.4 Score=38.89 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCcEEEEEECC-----CcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 011978 371 DGQWVASASFD-----KSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQK 435 (473)
Q Consensus 371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~ 435 (473)
++++++.|+.+ ..+.+||..+.+....-.. .......+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 67788888764 4689999988765433211 111112222 267777777655 357888887643
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.17 E-value=0.72 Score=38.40 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=48.3
Q ss_pred CCceEEEEeCCCCCCCee----ee--cCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCc------eEEEe-eCCcc
Q 011978 337 DDFTMFLWEPAVSKQPKT----RM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------FVAVF-RGHVG 403 (473)
Q Consensus 337 ~d~~i~iwd~~~~~~~~~----~~--~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~------~~~~~-~~h~~ 403 (473)
.|+.|+-++........- .. ..--..+..|.|.|+|.+-|.. |+.++-+...++. ....+ +....
T Consensus 105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~ 182 (236)
T 1tl2_A 105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD 182 (236)
T ss_dssp ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG
T ss_pred CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc
Confidence 568888887643222110 11 1112467899999999988877 7776544433221 01111 12233
Q ss_pred CEEEEEEecCCCEEEEEeCCCcE
Q 011978 404 PVYQISWSADSRLLLSGSKDSTL 426 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i 426 (473)
.-.-+.|+++|.+.+.. +|.+
T Consensus 183 ~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 183 TFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp GEEEEEECTTSCEEEEE--TTEE
T ss_pred eEEEEEECCCCcEEEEe--CCeE
Confidence 34457789998877665 6633
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.72 E-value=0.54 Score=42.54 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=64.0
Q ss_pred cceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEe----eCCccCEEEEEEecC---CCEEEEE---eCCCcEEE
Q 011978 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVF----RGHVGPVYQISWSAD---SRLLLSG---SKDSTLKV 428 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~----~~h~~~v~~v~~sp~---g~~l~s~---s~Dg~i~i 428 (473)
...+.++|.|||+++++--..|.|++++...++.. ..+ ....+....++|+|+ +..|... ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 35678999999998877665899999987666532 212 123457899999995 3344332 23455666
Q ss_pred EECCCC----------ce-eeccc---ccCCCEEEEEEeeCCCEEEEEeC
Q 011978 429 WDIRTQ----------KL-KQDLP---GHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 429 wd~~~~----------~~-~~~~~---~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
|..... +. ...++ .|. -..|.|.|||.++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECC
Confidence 665431 11 11122 232 356899999988787653
No 315
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.70 E-value=4.3 Score=41.29 Aligned_cols=258 Identities=12% Similarity=0.099 Sum_probs=130.8
Q ss_pred CCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCC
Q 011978 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (473)
Q Consensus 150 ~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~ 229 (473)
...|.++.-..+|. |-.|+.+| +..||-.+-+............|.++.... ...+-.++.+| +..+|..+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~------~g~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIID------NTYLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEET------TTEEEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcC------CCcEEEEeCCC-eEEEeCCC
Confidence 45688888877774 55566665 556664321111000011233466654221 23455555554 77889877
Q ss_pred CeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeee----ccCceEEEEEecccceeeeccccCCCc
Q 011978 230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK----GHGHWVNSLALSTEYALRTGAFDHTGK 305 (473)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (473)
.+...........|.++.. .++.|..++.+ .+..+|..+++...... .....|.++....
T Consensus 92 ~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-------------- 155 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-------------- 155 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT--------------
T ss_pred CEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC--------------
Confidence 6432211112234666654 46677777665 67888876654322100 0112233332221
Q ss_pred ccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecC----cccceeEEEECCCCcEEEEEECC
Q 011978 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG----HQQLVNHVYFSPDGQWVASASFD 381 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~v~~sp~g~~lasgs~d 381 (473)
...+..++.+| +..++............. ....|.++...+++..|-.|+.
T Consensus 156 -----------------------~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 156 -----------------------DNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp -----------------------TCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred -----------------------CCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 12344444443 555664322110000010 1234788888877664444543
Q ss_pred CcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-------ccCCCEEEEEEee
Q 011978 382 KSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-------GHADEVFAVDWSP 454 (473)
Q Consensus 382 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~s~ 454 (473)
+-+..+|..+++...........|.++...++|.+.+. +.+ -+.+++..+++...-.. -....|.++.-..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 35888898776543221112345888888778876554 344 58888887654321110 0124588887776
Q ss_pred CCCEE
Q 011978 455 DGEKV 459 (473)
Q Consensus 455 d~~~l 459 (473)
+|..-
T Consensus 289 ~g~lW 293 (758)
T 3ott_A 289 EHNIW 293 (758)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 66543
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.66 E-value=0.26 Score=45.02 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=60.8
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCc-eEEEe---eCCccCEEEEEEecC---CCEEEEEeC----C----CcE
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVF---RGHVGPVYQISWSAD---SRLLLSGSK----D----STL 426 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~-~~~~~---~~h~~~v~~v~~sp~---g~~l~s~s~----D----g~i 426 (473)
....++|.|+|+++++ ..++.|+++| ..++ .+..+ .........++|+|+ +..|..+.. + +.|
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4678999999985555 5569999997 3454 22221 112356889999998 444444332 3 567
Q ss_pred EEEECCCC-------ce-eecccc-cCCCEEEEEEeeCCCEEEEEeC
Q 011978 427 KVWDIRTQ-------KL-KQDLPG-HADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 427 ~iwd~~~~-------~~-~~~~~~-h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
..|+.... +. ...+.. ....-..+.|.|||..+++.+.
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 77776543 11 111221 1112357899999987777543
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.48 E-value=2.3 Score=37.35 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=35.7
Q ss_pred CCcEEEEEECC-----CcEEEEeCCCCceEEEeeC--CccCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCc
Q 011978 371 DGQWVASASFD-----KSIKLWNGTTGKFVAVFRG--HVGPVYQISWSADSRLLLSGSKDS-----TLKVWDIRTQK 435 (473)
Q Consensus 371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~Dg-----~i~iwd~~~~~ 435 (473)
++++++.|+.+ ..+.+||..+.+....-.. .......+ ..++++++.|+.++ .+.+||+.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 45666666553 3688899887654332111 11111112 23677777777553 48999987654
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.18 E-value=0.86 Score=43.12 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=62.2
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceE--EEeeC------CccCEEEEEEecC---CCEEEEEe-C-------
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRG------HVGPVYQISWSAD---SRLLLSGS-K------- 422 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~--~~~~~------h~~~v~~v~~sp~---g~~l~s~s-~------- 422 (473)
..+.++|.|+|+++++-...+.|++++..+++.. ..+.. ..+....|+|+|| +..|..+. .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4678999999998877554457888886655432 22221 2456789999995 44444433 2
Q ss_pred -----CCcEEEEECCCC-------ce-eecccc-cCCCEEEEEEeeCCCEEEEEeC
Q 011978 423 -----DSTLKVWDIRTQ-------KL-KQDLPG-HADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 423 -----Dg~i~iwd~~~~-------~~-~~~~~~-h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
...|.-|+.... +. ...+.. .......+.|.|||+++++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555654321 11 111221 1124688999999998777654
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.15 E-value=1.3 Score=39.86 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=81.3
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCEEEEEE--CCCCCeEEEE--ecCCeEEEeeCCCCcccccc-CC--Cc
Q 011978 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAW--SADGKHLVSG--SKAGELQCWDPQTGKPSGNP-LS--GH 192 (473)
Q Consensus 121 ~~lat~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~--s~dg~~l~s~--~~dg~i~iwd~~~~~~~~~~-~~--~~ 192 (473)
..++.++.||.|.-.|.++++....+... ..++....- .+.+..++.+ +.||.|+.++..+|...... .. ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788899999999999999888877543 122222110 0112234433 58999999998877432100 00 00
Q ss_pred CCcEEEEEeceecc----CCCCceEEEeeCCCcEEEEECCCCeEEEEecCccc-------cEEEEEe------cCCCeEE
Q 011978 193 KKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-------AVTCVKW------GGDGVIY 255 (473)
Q Consensus 193 ~~~v~~i~~~~~~~----~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~~~~------~~~~~l~ 255 (473)
..++.. .-.|.-. ......+++|+.+|.+.-.|+.+|+.+..+..... ...|... ..++.++
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 111111 1111110 00345788999999999999999999988753211 1112221 1234566
Q ss_pred EeecCCeEEEEECCCC
Q 011978 256 TGSQDCTIKVWETTQG 271 (473)
Q Consensus 256 s~~~d~~i~~wd~~~~ 271 (473)
.+..+..+.+.+ ++|
T Consensus 170 ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 170 IGKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEEECEECC-TTS
T ss_pred EecceEEEEEEC-CCC
Confidence 677666666655 344
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.07 E-value=3.7 Score=38.08 Aligned_cols=243 Identities=10% Similarity=0.148 Sum_probs=132.9
Q ss_pred EEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcC
Q 011978 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (473)
Q Consensus 114 ~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 193 (473)
.-.+|..+.+|--. ..++.|+|++++.++..+.-.+. |.-=.|-.+ +.|+-.+ +..|+-|++.........+..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34678777777654 67999999999888776654443 333344333 3444333 56899999865322211222221
Q ss_pred ----CcEEEEEeceeccCCCCceEEEee-------CCCcEEEEECCCCeEEEEecCccccEEEEEecCCC---eEEE-ee
Q 011978 194 ----KWITGISWEPVHLNAPCRRFVSAS-------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYT-GS 258 (473)
Q Consensus 194 ----~~v~~i~~~~~~~~~~~~~~~s~s-------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s-~~ 258 (473)
..|.. +. .+.+..+++..| -.|.+.+|..+.+. -..+.||...-..+...++. .+++ +.
T Consensus 147 ~L~~~QIIn--Y~---~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 147 SLAGCQIIN--YR---TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp GGTTCEEEE--EE---ECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred hcccceEEE--EE---ECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 11211 11 122334444221 34678888876543 34567887655555444321 2222 22
Q ss_pred c---CCeEEEEECCCCc-eeeeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE
Q 011978 259 Q---DCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (473)
Q Consensus 259 ~---d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (473)
. .+.+.+-++.... -...+ ......+.+.|
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f---~kk~vdv~fpp------------------------------------------- 254 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPP------------------------------------------- 254 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCC---CCEEEECCCCT-------------------------------------------
T ss_pred ecCCCcEEEEEEcCCCccCCCCc---cceeeeeeCCc-------------------------------------------
Confidence 2 1445444442110 00000 00000000000
Q ss_pred ecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCC
Q 011978 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADS 414 (473)
Q Consensus 335 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g 414 (473)
....+-.-++.+|+....+..-..-|.+++||++++.++..-+-...+|..-+-+...
T Consensus 255 ----------------------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~ 312 (494)
T 1bpo_A 255 ----------------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 312 (494)
T ss_dssp ----------------------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT
T ss_pred ----------------------ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC
Confidence 0112234567788888888888999999999999999988877667777766666555
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 011978 415 RLLLSGSKDSTLKVWDIRTQ 434 (473)
Q Consensus 415 ~~l~s~s~Dg~i~iwd~~~~ 434 (473)
.-++.....|.|.--.+...
T Consensus 313 ~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 313 AGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TEEEEEETTCEEEEEEECTT
T ss_pred CcEEEEccCceEEEEEEccc
Confidence 55666667777766666543
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.01 E-value=3 Score=36.69 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=49.7
Q ss_pred CCcEEEEEECC-------CcEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 011978 371 DGQWVASASFD-------KSIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL 436 (473)
Q Consensus 371 ~g~~lasgs~d-------~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~ 436 (473)
++++++.|+.+ ..+.+||..+.+.... +.........+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 66777777643 3588999887754432 111111112222 267777777654 3689999987543
Q ss_pred --eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 437 --KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+..++.....-..+ .-+++.++.||.++
T Consensus 233 ~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVC--AVNGLLYVVGGDDG 262 (302)
T ss_dssp EEECCCSSCCBSCEEE--EETTEEEEECCBCS
T ss_pred eeCCCCCCccccCeEE--EECCEEEEECCcCC
Confidence 22222111111122 23677888887664
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.85 E-value=3.7 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=40.0
Q ss_pred cceeEEEEC-------CCCcEEEEEECCCcEEEEeCCCC-ceE--EE-eeCCccCEEEEEEecCCCEEEEEe
Q 011978 361 QLVNHVYFS-------PDGQWVASASFDKSIKLWNGTTG-KFV--AV-FRGHVGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 361 ~~v~~v~~s-------p~g~~lasgs~d~~v~lwd~~~~-~~~--~~-~~~h~~~v~~v~~sp~g~~l~s~s 421 (473)
.....++|. .+|.++++.-..+.|...++... +.. .. +.+-...+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 57777777666778888887643 322 22 223345788999999997666553
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.84 E-value=3.2 Score=36.52 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCcEEEEEEC---------CCcEEEEeCCCCceEEEee--CCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 011978 371 DGQWVASASF---------DKSIKLWNGTTGKFVAVFR--GHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQ 434 (473)
Q Consensus 371 ~g~~lasgs~---------d~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~ 434 (473)
++++++.|+. -..+.+||..+.+....-. .....-..+. -++++++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 6677777763 3458899998875433311 1111112222 266777776653 35889998875
Q ss_pred ce--eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 435 KL--KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 435 ~~--~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+- +..++........+.+ +++.++.||.++
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQG 258 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred cEEECCCCCCCccceeEEEE--CCEEEEEeCcCC
Confidence 32 2233322222222323 677888888653
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.45 E-value=3.8 Score=36.07 Aligned_cols=103 Identities=10% Similarity=0.141 Sum_probs=51.5
Q ss_pred eEEEEeC--CCeEEEEeCCCCce--eEEEcCCCCCEEEEEECCCCCeEEEEecC----CeEEEeeCCCCcccccc-CCCc
Q 011978 122 QLASGSG--DTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGNP-LSGH 192 (473)
Q Consensus 122 ~lat~s~--d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~~ 192 (473)
.++.|+. ...+.+||..+.+= +.........-.++.+ ++..++.|+.+ ..+.+||+.+.+..... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3455543 35788899876541 1111111111222222 56677777755 67888998876532111 1111
Q ss_pred CCcEEEEEeceeccCCCCceEEEeeCC------CcEEEEECCCCeEE
Q 011978 193 KKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCV 233 (473)
Q Consensus 193 ~~~v~~i~~~~~~~~~~~~~~~s~s~d------g~i~iwd~~~~~~~ 233 (473)
......+.. ++..++.|+.+ ..+.+||..+.+-.
T Consensus 92 r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 92 RDSLAACAA-------EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp CBSCEEEEE-------TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred ccceeEEEE-------CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 111111111 23456666654 46888898876543
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.45 E-value=3.9 Score=36.21 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCCcEEEEEEC-C-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCce
Q 011978 370 PDGQWVASASF-D-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKDS-----TLKVWDIRTQKL 436 (473)
Q Consensus 370 p~g~~lasgs~-d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg-----~i~iwd~~~~~~ 436 (473)
.++++++.|+. + ..+.+||..+.+....- ......-..+. -++++++.|+.++ .+.+||+.+.+-
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 46777788876 2 46889998876543321 11111112222 2677777777654 488899877532
Q ss_pred --eecccccCCCEEEEEEeeCCCEEEEEeCC
Q 011978 437 --KQDLPGHADEVFAVDWSPDGEKVASGGKD 465 (473)
Q Consensus 437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D 465 (473)
+..++.....-..+. -+++.++.||.+
T Consensus 225 ~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~ 253 (315)
T 4asc_A 225 APFEAFPQERSSLSLVS--LVGTLYAIGGFA 253 (315)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred EECCCCCCcccceeEEE--ECCEEEEECCcc
Confidence 222222111112222 356777877764
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.39 E-value=6.7 Score=38.79 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=66.5
Q ss_pred EEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECC-CCcEEEEEECCC--cEEEEeCCCCceEEEeeCCccCEEEEE
Q 011978 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIS 409 (473)
Q Consensus 333 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~lasgs~d~--~v~lwd~~~~~~~~~~~~h~~~v~~v~ 409 (473)
++.+..+.|.+.+.... .............+.|+++| .|.++.+-.... .|...++................+.++
T Consensus 405 ~td~~~~~I~v~~~~G~-~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla 483 (628)
T 4a0p_A 405 WTCEATNVINVTRLDGR-SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALA 483 (628)
T ss_dssp EEETTTTEEEEEETTSC-EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEcCCCCEEEEEECCCC-eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEE
Confidence 34444555555554321 11111222345688999999 565555543333 466666653333333333445679999
Q ss_pred EecCCCEEEEEeC-CCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978 410 WSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 410 ~sp~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
+.+++..|+.+.. .+.|...|+..........+......+++...
T Consensus 484 ~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~ 529 (628)
T 4a0p_A 484 LDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE 529 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC
Confidence 9998777776654 57899999865432222212233456666543
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.39 E-value=7.4 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=21.9
Q ss_pred cEEEEEecCCCeEEEeecCC-eEEEEECCCC
Q 011978 242 AVTCVKWGGDGVIYTGSQDC-TIKVWETTQG 271 (473)
Q Consensus 242 ~v~~~~~~~~~~l~s~~~d~-~i~~wd~~~~ 271 (473)
..+.++|.++|.++.+...+ .|++++..++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 45688999999887777775 6777765443
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.36 E-value=5.5 Score=35.09 Aligned_cols=92 Identities=13% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCcEEEEEECC-----CcEEEEeCCCCceEEE--eeCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCcee-
Q 011978 371 DGQWVASASFD-----KSIKLWNGTTGKFVAV--FRGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKLK- 437 (473)
Q Consensus 371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~~- 437 (473)
++++++.|+.+ ..+.+||..+.+.... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 67777887764 4588999887654322 1111111122222 67777777654 46899999875432
Q ss_pred -ecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 438 -QDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 438 -~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
..++.....-..+. -+++.++.||.++
T Consensus 246 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 246 VAPMKHRRSALGITV--HQGRIYVLGGYDG 273 (308)
T ss_dssp CCCCSSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred CCCCCCCccceEEEE--ECCEEEEEcCcCC
Confidence 22222111112222 2677778887654
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.28 E-value=0.56 Score=42.76 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred ceeEEEECCCCc-EEEEEECCCcEEEEeCCCCceEEE-------eeCCccCEEEEEEecC---CCEEEEE-eC-------
Q 011978 362 LVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKFVAV-------FRGHVGPVYQISWSAD---SRLLLSG-SK------- 422 (473)
Q Consensus 362 ~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~~~~~~-------~~~h~~~v~~v~~sp~---g~~l~s~-s~------- 422 (473)
....|+|.|+|+ +++ +...|.|++++.. ++.... +....+....++|+|+ +..|..+ +.
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 467899999999 554 4567899999853 332111 1112346789999996 4444433 22
Q ss_pred CCcEEEEECCCC--c------eeeccc-----ccCCCEEEEEEeeCCCEEEEEeC
Q 011978 423 DSTLKVWDIRTQ--K------LKQDLP-----GHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 423 Dg~i~iwd~~~~--~------~~~~~~-----~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
...|..|+.... + ....++ .|. -..+.|.|||.++++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECC
Confidence 234666665432 1 111222 132 357999999976666543
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.22 E-value=6.5 Score=35.60 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred cceeEEEECC-------CCcEEEEEECCCcEEEEeCCCCceEEE---eeCCccCEEEEEEecCCCEEEEE
Q 011978 361 QLVNHVYFSP-------DGQWVASASFDKSIKLWNGTTGKFVAV---FRGHVGPVYQISWSADSRLLLSG 420 (473)
Q Consensus 361 ~~v~~v~~sp-------~g~~lasgs~d~~v~lwd~~~~~~~~~---~~~h~~~v~~v~~sp~g~~l~s~ 420 (473)
..+..++|.. +|.++++.-..+.|...++..++.... +......+..+++.|||.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 3566777753 577777766777888877776544322 22233578999999999866543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.79 E-value=8.2 Score=34.03 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=30.6
Q ss_pred CeEEEEeCCCCcee-EEEcCCCCCEEEEEECCCCCeEEEEec----C-------CeEEEeeCCCCcc
Q 011978 130 TTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKP 184 (473)
Q Consensus 130 ~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~s~~~----d-------g~i~iwd~~~~~~ 184 (473)
..+.+||..+++=. .................+++.++.|+. + ..+..||+.+.+.
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 57888998876521 122222122233333457777788874 1 1277888877653
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.69 E-value=8.4 Score=34.01 Aligned_cols=93 Identities=15% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCcEEEEEECC------CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 011978 370 PDGQWVASASFD------KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQKL 436 (473)
Q Consensus 370 p~g~~lasgs~d------~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~~ 436 (473)
.++++++.|+.+ ..+.+||..+.+....- .........+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 467777777642 35899999887643321 11111112222 266777777643 2477899876542
Q ss_pred --eecccccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 437 --KQDLPGHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 437 --~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+..++.....-..+ .-+++.++.||.+.
T Consensus 235 ~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 235 EVMTEFPQERSSISLV--SLAGSLYAIGGFAM 264 (318)
T ss_dssp EECCCCSSCCBSCEEE--EETTEEEEECCBCC
T ss_pred EECCCCCCcccceEEE--EECCEEEEECCeec
Confidence 22333222111222 23567778877653
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.68 E-value=9.2 Score=34.44 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=37.3
Q ss_pred ccEEEEEECCCCCeEEEEeCCCeEEEEeCCCCce--eEEE----cCCCCCEEEEEECCC
Q 011978 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKC----TGHKNWVLCIAWSAD 161 (473)
Q Consensus 109 ~~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~--~~~~----~~~~~~v~~l~~s~d 161 (473)
..-+.++|.|||+.+++--..|.|++++..++.. +..+ .........|+|+||
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 3567899999999777765589999998665443 2112 123456889999996
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.92 E-value=18 Score=36.61 Aligned_cols=306 Identities=11% Similarity=0.021 Sum_probs=155.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccC
Q 011978 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (473)
Q Consensus 110 ~V~~~~~sp~~~~lat~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 189 (473)
.|.++...+++..|-.|.. +-+..+|..+++......-....|.++...++|... .|+. +-+.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEc
Confidence 4888888877764433443 457788877654221111112458888888777654 4454 457888876654211100
Q ss_pred ------CCcCCcEEEEEeceeccCCCCceEEEeeCCCcEEEEECCCCeEEEEec-----CccccEEEEEecCCCeEEEee
Q 011978 190 ------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----GHTLAVTCVKWGGDGVIYTGS 258 (473)
Q Consensus 190 ------~~~~~~v~~i~~~~~~~~~~~~~~~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~l~s~~ 258 (473)
.-....|.++.... . ..+=.|+..| +.+............. .....|.++.-+.+|.|..|+
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~-----~-g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt 341 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQ-----E-HNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG 341 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECT-----T-CCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE
T ss_pred CCCCcCcCCcCeEEEEEEcC-----C-CCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee
Confidence 01123355553221 1 2233444445 4433322111111110 112458888888888888887
Q ss_pred cCCeEEEEECCCCce--eeeeec-------cCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCC
Q 011978 259 QDCTIKVWETTQGKL--IRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (473)
Q Consensus 259 ~d~~i~~wd~~~~~~--~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (473)
.+ -+..++..+++. ...+.. ....|.++... ..
T Consensus 342 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-------------------------------------~~ 383 (758)
T 3ott_A 342 AN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYED-------------------------------------KE 383 (758)
T ss_dssp TT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEEC-------------------------------------TT
T ss_pred CC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEEC-------------------------------------CC
Confidence 55 466666554321 111110 01122332211 12
Q ss_pred ceEEEecCCceEEEEeCCCCCCCeeeecC-----cccceeEEEECCCCcEEEEEECCCcEEEEeCCC-----CceE---E
Q 011978 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-----GKFV---A 396 (473)
Q Consensus 330 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~-----~~~~---~ 396 (473)
..+..|+. +-+..++............. ....|.++...++|++.+ |+..+-+..+|..+ +... .
T Consensus 384 g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~ 461 (758)
T 3ott_A 384 QQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQ 461 (758)
T ss_dssp SCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSE
T ss_pred CCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceeccc
Confidence 23555553 46777776433211111101 224578888888877544 56555688888542 1111 1
Q ss_pred EeeC----CccCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeccc-c--cCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 397 VFRG----HVGPVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-G--HADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 397 ~~~~----h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~--h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
.+.. ....|.++...++|++-+.++..+-+..+|..+++...... + ....+.++....+|+.-+. +.+|
T Consensus 462 ~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G 537 (758)
T 3ott_A 462 NYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG 537 (758)
T ss_dssp EECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE
T ss_pred ccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc
Confidence 2211 12358899988889877644444558889988765433211 1 1245777777777765543 3445
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.36 E-value=2 Score=41.22 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=65.2
Q ss_pred ceeEEEECCCCcEEEEEE-CCCcEEEEeCCCC------ce-------EEEeeCCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 362 LVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG------KF-------VAVFRGHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs-~d~~v~lwd~~~~------~~-------~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
....+.++|||++++.++ .+.++.++|.+.. +. ....+.- -.....+|.++|+-..|.--|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEE
Confidence 445688999999988776 4779999998741 11 2222222 2456789999996555666899999
Q ss_pred EEECCCC----------ceeecccccCCCEEEEEE------eeCCCEEEEEe
Q 011978 428 VWDIRTQ----------KLKQDLPGHADEVFAVDW------SPDGEKVASGG 463 (473)
Q Consensus 428 iwd~~~~----------~~~~~~~~h~~~i~~l~~------s~d~~~l~s~~ 463 (473)
-|++... ..+..+.-|-. +-.+.- .|||++|++..
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 9998642 23334433322 222222 58899999874
No 336
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.07 E-value=7.2 Score=36.82 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=59.6
Q ss_pred ceeEEEECCCCc-EEEEEECCCcEEEEeCCCC---ceEEEee---------CCccCEEEEEEecC----CCEEEEEeC--
Q 011978 362 LVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG---KFVAVFR---------GHVGPVYQISWSAD----SRLLLSGSK-- 422 (473)
Q Consensus 362 ~v~~v~~sp~g~-~lasgs~d~~v~lwd~~~~---~~~~~~~---------~h~~~v~~v~~sp~----g~~l~s~s~-- 422 (473)
..+.|+|.|||. .|..+...|.|++++.... ..+..+. ...+....|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 3444567899999975422 1122111 11456889999996 444443332
Q ss_pred C----------CcEEEEECCC----------Cceeeccc--ccCCCEEEEEEeeCCCEEEEEeCCC
Q 011978 423 D----------STLKVWDIRT----------QKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDR 466 (473)
Q Consensus 423 D----------g~i~iwd~~~----------~~~~~~~~--~h~~~i~~l~~s~d~~~l~s~~~D~ 466 (473)
+ ..|.-|.+.. .+.+..+. .....-..|.|.|||++.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 11222221 1112357899999998877776543
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.05 E-value=13 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=36.8
Q ss_pred CCcEEEEEECC-----CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc
Q 011978 371 DGQWVASASFD-----KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKD-----STLKVWDIRTQK 435 (473)
Q Consensus 371 ~g~~lasgs~d-----~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D-----g~i~iwd~~~~~ 435 (473)
++++++.|+.+ ..+.+||+.+.+....- .........+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 67788888764 46899999877543321 11111112222 266777777654 347788887643
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.88 E-value=34 Score=37.21 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=123.9
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecCCeEEEeeCCCCccccccCCCcCCcEEEEEeceeccC
Q 011978 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (473)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 207 (473)
+..+|.|-|+..+....... -..-+.-.+|..+.|+-- ...+++++|+++........ ....|.-..|...
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~--- 116 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL--- 116 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCC---
Confidence 34478888887654332111 111123346666555443 36789999998765433211 1234666666432
Q ss_pred CCCceEEEeeCCCcEEEEECCCC-eEEEEecCc----cccEEEEEecCCC--eEEEee------cCCeEEEEECCCCcee
Q 011978 208 APCRRFVSASKDGDARIWDVSLR-KCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLI 274 (473)
Q Consensus 208 ~~~~~~~s~s~dg~i~iwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~--~l~s~~------~d~~i~~wd~~~~~~~ 274 (473)
..++.. .+..|..|++... .....+..| ...|..-..+++. .+++|- -.|.+.+|..+.+. .
T Consensus 117 ---~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-s 191 (1630)
T 1xi4_A 117 ---NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-S 191 (1630)
T ss_pred ---CeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-c
Confidence 223322 3467999998642 222222222 2334444445554 233332 34666777665432 1
Q ss_pred eeeeccCceEEEEEecccceeeeccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEE----ecCCceEEEEeCCCC-
Q 011978 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GSDDFTMFLWEPAVS- 349 (473)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~d~~i~iwd~~~~- 349 (473)
+.+.+|...-..+.+.. ...+..+++ ....+.+++-++...
T Consensus 192 Q~iegha~~F~~~~~~~----------------------------------~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 192 QPIEGHAASFAQFKMEG----------------------------------NAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred hhhhHhHhhhheeccCC----------------------------------CCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 22333321111100000 000111211 112356777765332
Q ss_pred --CCCe-e----eec---CcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEE
Q 011978 350 --KQPK-T----RMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLS 419 (473)
Q Consensus 350 --~~~~-~----~~~---~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 419 (473)
..+. + ... ...+-..++..|+....+..-+.-|.+.++|+.+|.++..-+-...+|...+-+....-++.
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~ 317 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 317 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEE
Confidence 1110 0 000 01223456777877778888888999999999999887655444445544443333223333
Q ss_pred EeCCCcEEEEECC
Q 011978 420 GSKDSTLKVWDIR 432 (473)
Q Consensus 420 ~s~Dg~i~iwd~~ 432 (473)
....|.|.--.+.
T Consensus 318 vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 318 VNRKGQVLSVCVE 330 (1630)
T ss_pred EcCCceEEEEEEc
Confidence 3355555444443
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.68 E-value=15 Score=32.92 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=26.9
Q ss_pred cEEEEeCCCCceE--EEeeCCccCEEEEEEecCCCEEEEEeCCC------cEEEEECCCCceee
Q 011978 383 SIKLWNGTTGKFV--AVFRGHVGPVYQISWSADSRLLLSGSKDS------TLKVWDIRTQKLKQ 438 (473)
Q Consensus 383 ~v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg------~i~iwd~~~~~~~~ 438 (473)
.+.+||+.+.+.. ..+......-. +...++++++.|+.++ .|.++++++++...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 4678888765433 22222222112 2234677777787543 35566887766544
No 340
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.90 E-value=16 Score=32.48 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=126.0
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeeccC----ceEEEE
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHG----HWVNSL 287 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~----~~v~~~ 287 (473)
+++--...++.++|+++...+..+.- ...|..-.|-.+..|.-- .+..|+-|++... ...+-+..|. ..|...
T Consensus 80 ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY 157 (365)
T 2xzh_A 80 VIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 157 (365)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEE-ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEE
T ss_pred EEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEE-cCCcEEEEcccCCCCCceeeecchhcccceEEEE
Confidence 33333478999999999988776543 346777788766654322 3468999998642 3444444332 233333
Q ss_pred Eecccceee--eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978 288 ALSTEYALR--TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (473)
Q Consensus 288 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (473)
..+++..+. .|.... . +.-.|.+.+|... +.....+.||......
T Consensus 158 ~~d~~~kW~~l~GI~~~--------------------------~-----~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 158 RTDAKQKWLLLTGISAQ--------------------------Q-----NRVVGAMQLYSVD--RKVSQPIEGHAASFAQ 204 (365)
T ss_dssp EECTTSCEEEEEEEEEE--------------------------T-----TEEEEEEEEEETT--TTEEEEECCSEEEEEE
T ss_pred EECCCCCEEEEEeEecc--------------------------C-----CccceeEEEEeec--ccccceeeeeeeeeEE
Confidence 333332211 110000 0 0113567888753 3444556677655544
Q ss_pred EEECCC---CcEEEEEECC---CcEEEEeCCCC---c------eEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 366 VYFSPD---GQWVASASFD---KSIKLWNGTTG---K------FVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 366 v~~sp~---g~~lasgs~d---~~v~lwd~~~~---~------~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
+.+.-+ .++++.+... +.+++-++... . .+..+- ...+.-.++..|+.-..+..-..-|.|+
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ih 284 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 284 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEE
Confidence 333211 2244444332 47888876432 1 111121 1234556777888777888888999999
Q ss_pred EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
+||+.++..+..-+-..+.|...+-+....-++.....|.+
T Consensus 285 lyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 285 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 99999998876555455677766655555566666666655
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.51 E-value=28 Score=34.82 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=40.5
Q ss_pred EEEECCC-CcEEEEEEC--C-----CcEEEEeCCCCc------eEEEee---CCccCEEEEEEecCCCEEEEEeC-----
Q 011978 365 HVYFSPD-GQWVASASF--D-----KSIKLWNGTTGK------FVAVFR---GHVGPVYQISWSADSRLLLSGSK----- 422 (473)
Q Consensus 365 ~v~~sp~-g~~lasgs~--d-----~~v~lwd~~~~~------~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~----- 422 (473)
++.+..+ +++++.|+. + ..+..||+.+.+ ....-. ........+ ...++++++.|+.
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGL 621 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCC
Confidence 3555555 777888876 2 358899988776 222211 011111222 2333677777764
Q ss_pred ---CCcEEEEECCCCce
Q 011978 423 ---DSTLKVWDIRTQKL 436 (473)
Q Consensus 423 ---Dg~i~iwd~~~~~~ 436 (473)
...+.+||+.+.+-
T Consensus 622 ~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 622 FDRTNSIISLDPLSETL 638 (695)
T ss_dssp CCTTTSEEEEETTTTEE
T ss_pred CCCCCeEEEEECCCCeE
Confidence 34589999987543
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.90 E-value=49 Score=36.09 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=108.9
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeecc----CceEEEE
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGH----GHWVNSL 287 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~----~~~v~~~ 287 (473)
+++--...++.|+|+.+...+..+.- ...|.--.|-.+..|.-. .+..|..|++... ...+.+..| +..|...
T Consensus 79 iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 79 VIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred eEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence 44444578999999988766554332 235666677666543222 3468999998632 233323222 2223333
Q ss_pred Eecccceee--eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978 288 ALSTEYALR--TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (473)
Q Consensus 288 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (473)
..+++..+. .|.... .+.-.|.+.+|.... .....+.||......
T Consensus 157 ~~d~~~kW~~l~gi~~~-------------------------------~~~v~G~mQLyS~er--~~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQ-------------------------------QNRVVGAMQLYSVDR--KVSQPIEGHAASFAQ 203 (1630)
T ss_pred eeCCCCCeEEEEeeccC-------------------------------CCcccceeeeeeccc--ccchhhhHhHhhhhe
Confidence 333322111 110000 012346677776432 222334455444433
Q ss_pred EEEC--C-CCcEEEEEEC---CCcEEEEeCCCC---ce------EEEee---CCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 366 VYFS--P-DGQWVASASF---DKSIKLWNGTTG---KF------VAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 366 v~~s--p-~g~~lasgs~---d~~v~lwd~~~~---~~------~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
+.+. + ...+++.+.. .+.++|-++... .. +..+- ...+...++..|+.-..+...+.-|.|.
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~ 283 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 283 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEE
Confidence 3322 1 1223333322 257777776432 11 11111 1123345666777666777888899999
Q ss_pred EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCc
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 467 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~ 467 (473)
+||+.++..+..-+-..+.|+..+-+....-++.....|.
T Consensus 284 ~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~ 323 (1630)
T 1xi4_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (1630)
T ss_pred EEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence 9999998776543333445554444433333444444443
No 343
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.07 E-value=34 Score=36.57 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.3
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.+.+++..++..++.+-+.|+++|+||+.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3445667788899999999999999999999988764
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.11 E-value=48 Score=34.61 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=32.6
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEe
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~ 398 (473)
.+.+++..++..++.+-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667788888999999999999999999999988764
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=82.93 E-value=30 Score=32.20 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=128.4
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCccccEEEEEecCCCeEEEeecCCeEEEEECCCC-ceeeeeeccC----ceEEEE
Q 011978 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHG----HWVNSL 287 (473)
Q Consensus 213 ~~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~----~~v~~~ 287 (473)
++.--...++.|+|+++...+..+.-. ..|..-.|-.+..|.- =.+..|+-|++... ...+-+..|. ..|...
T Consensus 79 iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~l-VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 79 VIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp CEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred EEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEE-EcCCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 333334789999999998877765432 3466666765554332 23568999998642 3444444332 233333
Q ss_pred Eecccceee--eccccCCCcccCCHHHHHHHHHhhhhcccCCCCceEEEecCCceEEEEeCCCCCCCeeeecCcccceeE
Q 011978 288 ALSTEYALR--TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (473)
Q Consensus 288 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 365 (473)
..+++..+. .|.... . +.-.|.+.+|... +.....+.||......
T Consensus 157 ~~d~~~kW~~l~GI~~~--------------------------~-----~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQ--------------------------Q-----NRVVGAMQLYSVD--RKVSQPIEGHAASFAQ 203 (494)
T ss_dssp EECTTSSEEEEEEEEEE--------------------------T-----TEEEEEEEEEEST--TCCEEEECCSEEEEEE
T ss_pred EECCCCCeEEEEeeccc--------------------------C-----CcccceEEEeecc--ccccchheeeeeeeEE
Confidence 333332211 110000 0 0124677888753 3445567777766655
Q ss_pred EEECCC---CcEEEEEECC---CcEEEEeCCCC---c------eEEEee---CCccCEEEEEEecCCCEEEEEeCCCcEE
Q 011978 366 VYFSPD---GQWVASASFD---KSIKLWNGTTG---K------FVAVFR---GHVGPVYQISWSADSRLLLSGSKDSTLK 427 (473)
Q Consensus 366 v~~sp~---g~~lasgs~d---~~v~lwd~~~~---~------~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~Dg~i~ 427 (473)
+.+..+ .++++.+... +.+++-++... . .+..+- ...+.-.++..|+.-..+..-..-|.|+
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ 283 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 283 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence 444322 1355555543 67888887432 1 111111 1234566788888777888889999999
Q ss_pred EEECCCCceeecccccCCCEEEEEEeeCCCEEEEEeCCCcE
Q 011978 428 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 468 (473)
Q Consensus 428 iwd~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i 468 (473)
+||+.++..+..-+-..+.|...+-.....-++.....|.+
T Consensus 284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999998876554455677766666665666666666655
No 346
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=78.60 E-value=32 Score=29.76 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=42.4
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
|+.++.|-.....+... .......|..++...+..+++ . ||.|..|-......+..-..-...|..++...+ ..+
T Consensus 119 ~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~ 193 (282)
T 3qhy_B 119 DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSL 193 (282)
T ss_dssp TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEE
T ss_pred CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEE
Confidence 78888886433222111 011123455665544333322 3 688888854331111111111245666665433 223
Q ss_pred EEEeCCCcEEEEECCC
Q 011978 418 LSGSKDSTLKVWDIRT 433 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~ 433 (473)
+. .||.|+.|-...
T Consensus 194 al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNR 207 (282)
T ss_dssp EE--ETTEEEEEECCT
T ss_pred EE--ECCeEEEEECCC
Confidence 33 488888887643
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=76.56 E-value=23 Score=31.05 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=60.3
Q ss_pred EEEecCCceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEEC----CC-------cEEEEeCCCCceEEE--e
Q 011978 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DK-------SIKLWNGTTGKFVAV--F 398 (473)
Q Consensus 332 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~----d~-------~v~lwd~~~~~~~~~--~ 398 (473)
++.|+. .+..||+....-....+..........+...++.+++.|+. ++ .+..||..+.+.... +
T Consensus 19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 96 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96 (318)
T ss_dssp EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence 444443 36778876443222122211111222334567888888873 12 177888877654332 1
Q ss_pred eCCccCEEEEEEecCCCEEEEEeCC-------CcEEEEECCCCcee--ecccccCCCEEEEEEeeCCCEEEEEeC
Q 011978 399 RGHVGPVYQISWSADSRLLLSGSKD-------STLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGK 464 (473)
Q Consensus 399 ~~h~~~v~~v~~sp~g~~l~s~s~D-------g~i~iwd~~~~~~~--~~~~~h~~~i~~l~~s~d~~~l~s~~~ 464 (473)
.........+. -+++.++.|+.+ ..+.+||..+.+-. ..++.....-..+ ..+++.++.||.
T Consensus 97 p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~ 167 (318)
T 2woz_A 97 PSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI--SHNGMIYCLGGK 167 (318)
T ss_dssp SSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE--EETTEEEEECCE
T ss_pred CccccccceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE--EECCEEEEEcCC
Confidence 11111111222 266777777654 24788898765432 2222111111112 246677777764
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.34 E-value=55 Score=30.77 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.2
Q ss_pred cEEEEEECCCCC-eEEEEeCCCeEEEEeCCCC---ceeEEEc---------CCCCCEEEEEECCC
Q 011978 110 AVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ---TPMFKCT---------GHKNWVLCIAWSAD 161 (473)
Q Consensus 110 ~V~~~~~sp~~~-~lat~s~d~~i~iwd~~~~---~~~~~~~---------~~~~~v~~l~~s~d 161 (473)
.-+.|+|.|||. +|+.+...|.|++++.... .++..+. ..+.....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 346899999996 5666678899999975432 1222221 12456888999986
No 349
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=71.11 E-value=24 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCcEEEEEEC-C---------CcEEEEeCCCCceEEEee---CCccCEEEEEEecCCCEEEEEeCC
Q 011978 371 DGQWVASASF-D---------KSIKLWNGTTGKFVAVFR---GHVGPVYQISWSADSRLLLSGSKD 423 (473)
Q Consensus 371 ~g~~lasgs~-d---------~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~D 423 (473)
++++++.|+. + ..+.+||..+.+....-. ........+. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5777777765 2 468899988775433211 1111122222 577777888765
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.09 E-value=20 Score=34.95 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=41.5
Q ss_pred eeEEEECCCCcEEEEEECC------------CcEEEEeCCCCceEEEeeCCc-cCEEEEEEecCCCEEEEE
Q 011978 363 VNHVYFSPDGQWVASASFD------------KSIKLWNGTTGKFVAVFRGHV-GPVYQISWSADSRLLLSG 420 (473)
Q Consensus 363 v~~v~~sp~g~~lasgs~d------------~~v~lwd~~~~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~ 420 (473)
.--|+|+|+|++++.-..+ ..+.+.+..+++....+.++. ..++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3458999999966654322 235566777788777776654 579999999999877654
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=68.26 E-value=12 Score=36.41 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=40.5
Q ss_pred CEEEEEEecCCCEEEEEeCC------------CcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEE
Q 011978 404 PVYQISWSADSRLLLSGSKD------------STLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~D------------g~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~ 462 (473)
..-.|+|+|+|++++.-..+ +.+.+.+..+++...-+.+. ..+++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45679999999976654322 23555566667665544444 3589999999999988654
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=68.15 E-value=14 Score=35.52 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=56.2
Q ss_pred cEEEEeCCC----Cc-eEEEeeCCccCEEEEEEecCCCEEEEEeC-CCcEEEEECCCC------ce-------eeccccc
Q 011978 383 SIKLWNGTT----GK-FVAVFRGHVGPVYQISWSADSRLLLSGSK-DSTLKVWDIRTQ------KL-------KQDLPGH 443 (473)
Q Consensus 383 ~v~lwd~~~----~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-Dg~i~iwd~~~~------~~-------~~~~~~h 443 (473)
.|.+.|.+. +. .+..+.. ......+..+|||++++.++. +.++.++|++.. +. .....-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~- 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL- 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-
T ss_pred CeeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-
Confidence 366777665 32 2222221 112345788999999887764 789999998742 11 112221
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCcEEecc
Q 011978 444 ADEVFAVDWSPDGEKVASGGKDRVLKLWM 472 (473)
Q Consensus 444 ~~~i~~l~~s~d~~~l~s~~~D~~i~~w~ 472 (473)
.-.-...+|.++|....|.--|.+|--|+
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEe
Confidence 22457889999997667777899998885
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=67.42 E-value=64 Score=32.22 Aligned_cols=93 Identities=10% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCcEEEEEECC------CcEEEEeCCCCceEEEe--eCCccCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceee--
Q 011978 371 DGQWVASASFD------KSIKLWNGTTGKFVAVF--RGHVGPVYQISWSADSRLLLSGSKDS--TLKVWDIRTQKLKQ-- 438 (473)
Q Consensus 371 ~g~~lasgs~d------~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~Dg--~i~iwd~~~~~~~~-- 438 (473)
++++++.|+.+ ..+.+||..+.+....- ......- +++.-.++++++.|+.++ .+.+||..+.+-..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 78888888754 35788898876543321 1111111 122224788888887654 69999998754321
Q ss_pred c---ccccCCCEEEEEEeeC-CCEEEEEeC
Q 011978 439 D---LPGHADEVFAVDWSPD-GEKVASGGK 464 (473)
Q Consensus 439 ~---~~~h~~~i~~l~~s~d-~~~l~s~~~ 464 (473)
. ++.....-.++.+..+ ++.++.||.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 1 2211111223455554 667777776
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=64.27 E-value=29 Score=33.53 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=43.2
Q ss_pred cceeEEEECCCCcEEEEEEC------------CCcEEEEeCCCCceEEEeeCC-ccCEEEEEEecCCCEEEEEe
Q 011978 361 QLVNHVYFSPDGQWVASASF------------DKSIKLWNGTTGKFVAVFRGH-VGPVYQISWSADSRLLLSGS 421 (473)
Q Consensus 361 ~~v~~v~~sp~g~~lasgs~------------d~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~g~~l~s~s 421 (473)
.....|+|+++|.+.+.-.. ...|..++..+++....+.+. ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34667999999987773221 125777787788876666543 35689999999999877653
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.72 E-value=26 Score=33.82 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=41.9
Q ss_pred cCEEEEEEecCCCEEEEEeC------------CCcEEEEECCCCceeeccccc-CCCEEEEEEeeCCCEEEEE
Q 011978 403 GPVYQISWSADSRLLLSGSK------------DSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 403 ~~v~~v~~sp~g~~l~s~s~------------Dg~i~iwd~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~ 462 (473)
.....|.|.++|.+.++... .+.|+.++..+++...-+.+. ..+++.++||||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45788999999987763321 125667777777765545432 3578999999999988654
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=57.95 E-value=95 Score=27.05 Aligned_cols=88 Identities=6% Similarity=0.038 Sum_probs=52.0
Q ss_pred EEECCCCcEEEEEEC-CCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeecccc
Q 011978 366 VYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLPG 442 (473)
Q Consensus 366 v~~sp~g~~lasgs~-d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~ 442 (473)
.+++|+++.|.-.+. ...|..-++..+.....+.+ ... ..++|++.+|+-...++ .|..-++.... ...+..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~ 224 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE 224 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC
Confidence 456788888887665 56788888776654444442 222 23569998888765443 45555555443 233322
Q ss_pred cCCCEEEEEEeeCCCEEEEE
Q 011978 443 HADEVFAVDWSPDGEKVASG 462 (473)
Q Consensus 443 h~~~i~~l~~s~d~~~l~s~ 462 (473)
..+ ..|+|++++|..+
T Consensus 225 --~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 225 --ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp --SCE--EEEEEETTEEEEE
T ss_pred --CCc--ceEEECCCEEEEE
Confidence 223 2367777777654
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.22 E-value=16 Score=38.11 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
.+.+++..++..++++-+.|+++|+|++.++++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 56778888888999999999999999999987654
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.18 E-value=26 Score=34.86 Aligned_cols=37 Identities=22% Similarity=0.572 Sum_probs=29.8
Q ss_pred ccEEEEEecCCCeEEEeecCCeEEEEECCCCceeeeee
Q 011978 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278 (473)
Q Consensus 241 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 278 (473)
..|.|+.+. +..+++-+.|+++|+|++.+++++....
T Consensus 222 ~~Is~~~~~-~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFH-ERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEET-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccC-CcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 457776664 5689999999999999999998876543
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.24 E-value=34 Score=34.10 Aligned_cols=36 Identities=11% Similarity=0.357 Sum_probs=29.0
Q ss_pred ceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEee
Q 011978 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (473)
Q Consensus 362 ~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~ 399 (473)
.|.++.+ +..++++-+.|+++|+||+.+++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555444 47899999999999999999999877654
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.18 E-value=1.6e+02 Score=25.97 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=64.1
Q ss_pred CCcEEEEEECCCcEEEEeCCC-------CceEEEeeCCccCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCc------
Q 011978 371 DGQWVASASFDKSIKLWNGTT-------GKFVAVFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDIR--TQK------ 435 (473)
Q Consensus 371 ~g~~lasgs~d~~v~lwd~~~-------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~--~~~------ 435 (473)
+..+++..+.+|.++--.+.. |.....++. .+.+..+........|+..+..|.+..+.+. .-.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 578999999999999886543 222222333 3455555555556678888899998888776 311
Q ss_pred ---eeecccccCCCEEEEEEeeCCCEEEEEeCCCcEEe
Q 011978 436 ---LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 470 (473)
Q Consensus 436 ---~~~~~~~h~~~i~~l~~s~d~~~l~s~~~D~~i~~ 470 (473)
....+. ..+.|.++...+++.+|+.++..|.++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 112232 2456777766666778999998887764
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.73 E-value=17 Score=38.83 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee
Q 011978 404 PVYQISWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 438 (473)
Q Consensus 404 ~v~~v~~sp~g~~l~s~s~Dg~i~iwd~~~~~~~~ 438 (473)
.+.+++..++..++++-+.|+++|||++.+++++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 34556667888999999999999999999887654
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=27.89 E-value=2.8e+02 Score=23.61 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=52.0
Q ss_pred CceEEEEeCCCCCCCeeeecCcccceeEEEECCCCcEEEEEECCCcEEEEeCCCCceEEEeeCCccCEEEEEEecCCCEE
Q 011978 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQISWSADSRLL 417 (473)
Q Consensus 338 d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~g~~lasgs~d~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 417 (473)
|+.++.|-.....+... ...-...|..|+...+... +. .||.|..|=......+..-......|..++-..+ ..+
T Consensus 158 ~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~ 232 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTV-PAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSL 232 (282)
T ss_dssp TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEE
T ss_pred CCEEEEecCCCCCCCCC-ceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEE
Confidence 68888886443222111 0011234666666544333 33 4899999954432111111111234666664433 233
Q ss_pred EEEeCCCcEEEEECCCCceeecccccCCCEEEEEEee
Q 011978 418 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 454 (473)
Q Consensus 418 ~s~s~Dg~i~iwd~~~~~~~~~~~~h~~~i~~l~~s~ 454 (473)
+. . ||.|+.|-......... ...|.+++-..
T Consensus 233 al-~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 233 AL-K-NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp EE-E-TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred EE-E-CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 33 3 99999997655332222 23466665443
No 363
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.64 E-value=3.7e+02 Score=23.17 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=35.0
Q ss_pred CCCCCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCEEEEEECCCCCeEEEEecC--------------CeEEEeeCC
Q 011978 117 SPDGRQLASGS--GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--------------GELQCWDPQ 180 (473)
Q Consensus 117 sp~~~~lat~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s~~~d--------------g~i~iwd~~ 180 (473)
+++|.+|+... .++.|...+.....+. .+.. -.+--++++|++|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCE-EEEE----EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCE-EccC----CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35677776654 3456666665544322 2221 1234567889999877653 356666665
Q ss_pred CCc
Q 011978 181 TGK 183 (473)
Q Consensus 181 ~~~ 183 (473)
.++
T Consensus 97 g~~ 99 (302)
T 3s25_A 97 GHG 99 (302)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 364
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=22.51 E-value=75 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.1
Q ss_pred CeeeecCCCCHHHHHHHHHHH
Q 011978 25 APMYFPQNAGPQQLSQIVNKL 45 (473)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~l 45 (473)
-|+.+|......+|+.++..+
T Consensus 12 lpfelpaga~asqls~lls~~ 32 (69)
T 2jx5_A 12 LPFELPAGARASQLSNLLSSS 32 (69)
T ss_dssp EEEECCTTCCHHHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHhhc
Confidence 589999999999999998654
Done!