Query 011979
Match_columns 473
No_of_seqs 152 out of 1928
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2941 Beta-1,4-mannosyltrans 100.0 9.3E-65 2E-69 492.6 40.5 431 1-466 9-442 (444)
2 cd03816 GT1_ALG1_like This fam 100.0 1.8E-47 4E-52 400.2 44.3 411 2-463 1-414 (415)
3 PLN02275 transferase, transfer 100.0 2.5E-45 5.4E-50 378.6 40.9 371 1-426 1-371 (371)
4 PRK10307 putative glycosyl tra 100.0 2.3E-37 5E-42 322.8 41.5 378 7-464 3-406 (412)
5 PLN02871 UDP-sulfoquinovose:DA 100.0 1E-36 2.2E-41 323.6 37.4 370 2-471 57-439 (465)
6 TIGR03449 mycothiol_MshA UDP-N 100.0 1.5E-35 3.3E-40 307.5 40.3 365 15-466 19-401 (405)
7 cd03796 GT1_PIG-A_like This fa 100.0 2.7E-35 5.9E-40 306.1 40.2 352 13-468 11-369 (398)
8 TIGR03088 stp2 sugar transfera 100.0 5.1E-35 1.1E-39 300.3 40.1 356 4-460 2-367 (374)
9 cd03805 GT1_ALG2_like This fam 100.0 4.8E-35 1E-39 301.6 36.5 365 4-458 1-391 (392)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 8.7E-34 1.9E-38 299.0 39.7 363 20-461 31-436 (439)
11 cd04962 GT1_like_5 This family 100.0 9.7E-34 2.1E-38 288.9 37.8 353 6-460 2-365 (371)
12 PRK15427 colanic acid biosynth 100.0 5.1E-33 1.1E-37 290.4 38.0 273 98-460 115-400 (406)
13 cd03800 GT1_Sucrose_synthase T 100.0 5.1E-33 1.1E-37 285.6 37.4 361 14-459 19-396 (398)
14 cd03818 GT1_ExpC_like This fam 100.0 1E-32 2.2E-37 286.4 37.6 357 19-459 11-394 (396)
15 cd03794 GT1_wbuB_like This fam 100.0 3.1E-32 6.7E-37 274.1 39.3 361 16-458 15-392 (394)
16 TIGR02468 sucrsPsyn_pln sucros 100.0 1.9E-32 4.1E-37 305.7 40.5 380 23-465 203-670 (1050)
17 TIGR02149 glgA_Coryne glycogen 100.0 2.1E-32 4.6E-37 281.5 36.9 346 16-461 16-382 (388)
18 cd03817 GT1_UGDG_like This fam 100.0 3.6E-32 7.8E-37 273.1 37.0 351 17-461 16-372 (374)
19 cd05844 GT1_like_7 Glycosyltra 100.0 1.1E-32 2.4E-37 280.6 33.6 275 98-459 79-364 (367)
20 cd03819 GT1_WavL_like This fam 100.0 2.9E-32 6.3E-37 275.7 34.9 330 15-454 9-354 (355)
21 PRK00654 glgA glycogen synthas 100.0 8.1E-32 1.8E-36 286.1 39.3 369 15-469 16-465 (466)
22 cd03806 GT1_ALG11_like This fa 100.0 8.1E-32 1.8E-36 282.5 38.1 353 16-454 14-415 (419)
23 cd04955 GT1_like_6 This family 100.0 1.5E-31 3.1E-36 271.1 38.7 342 14-461 13-360 (363)
24 cd03814 GT1_like_2 This family 100.0 1.4E-31 3E-36 269.1 37.2 343 16-461 15-361 (364)
25 TIGR02095 glgA glycogen/starch 100.0 2.1E-31 4.6E-36 283.3 38.0 288 100-461 127-468 (473)
26 PRK15484 lipopolysaccharide 1, 100.0 2.7E-31 5.9E-36 275.0 37.7 344 7-462 5-374 (380)
27 cd03812 GT1_CapH_like This fam 100.0 2E-31 4.3E-36 269.9 35.2 329 14-446 10-345 (358)
28 cd03808 GT1_cap1E_like This fa 100.0 5E-31 1.1E-35 262.4 37.5 345 7-459 2-357 (359)
29 cd03807 GT1_WbnK_like This fam 100.0 5.5E-31 1.2E-35 263.2 37.8 350 6-461 2-362 (365)
30 PRK15179 Vi polysaccharide bio 100.0 8E-31 1.7E-35 287.3 40.6 370 5-461 283-689 (694)
31 cd03799 GT1_amsK_like This is 100.0 2.5E-31 5.5E-36 268.1 33.9 264 99-458 77-354 (355)
32 cd03795 GT1_like_4 This family 100.0 5.5E-31 1.2E-35 265.9 36.3 336 13-454 11-355 (357)
33 PLN02949 transferase, transfer 100.0 7.5E-31 1.6E-35 277.6 36.9 231 157-464 211-455 (463)
34 cd03801 GT1_YqgM_like This fam 100.0 1.6E-30 3.5E-35 258.3 36.9 280 99-460 83-370 (374)
35 cd04951 GT1_WbdM_like This fam 100.0 2.8E-30 6.1E-35 261.0 39.2 346 6-461 2-356 (360)
36 TIGR02470 sucr_synth sucrose s 100.0 3E-30 6.5E-35 283.1 41.3 375 28-460 300-742 (784)
37 PRK14099 glycogen synthase; Pr 100.0 4.8E-30 1E-34 273.5 41.0 290 100-470 132-482 (485)
38 cd03820 GT1_amsD_like This fam 100.0 4.1E-30 8.9E-35 254.7 36.7 327 15-458 12-345 (348)
39 cd03821 GT1_Bme6_like This fam 100.0 2.8E-30 6.1E-35 259.0 35.9 280 99-459 85-373 (375)
40 PLN02939 transferase, transfer 100.0 1.1E-29 2.3E-34 280.1 42.3 296 100-468 609-968 (977)
41 cd03822 GT1_ecORF704_like This 100.0 6.4E-30 1.4E-34 257.6 37.1 274 100-461 75-363 (366)
42 cd03792 GT1_Trehalose_phosphor 100.0 2.2E-30 4.7E-35 266.5 33.4 274 99-461 83-367 (372)
43 PLN02846 digalactosyldiacylgly 100.0 1.2E-29 2.7E-34 266.0 39.0 354 1-460 1-386 (462)
44 cd03791 GT1_Glycogen_synthase_ 100.0 1.2E-29 2.7E-34 269.4 36.5 288 100-462 128-473 (476)
45 PRK14098 glycogen synthase; Pr 100.0 2.7E-29 5.9E-34 267.9 39.0 292 100-468 140-487 (489)
46 cd03813 GT1_like_3 This family 100.0 3.9E-30 8.5E-35 273.9 32.1 275 99-460 171-471 (475)
47 PLN02316 synthase/transferase 100.0 7E-29 1.5E-33 277.9 42.2 275 100-467 708-1034(1036)
48 cd03809 GT1_mtfB_like This fam 100.0 1.5E-29 3.2E-34 254.9 33.3 273 100-460 84-364 (365)
49 PLN00142 sucrose synthase 100.0 1.7E-29 3.6E-34 277.3 35.9 374 26-460 322-765 (815)
50 cd03798 GT1_wlbH_like This fam 100.0 3.3E-29 7.1E-34 250.1 34.9 273 99-459 91-370 (377)
51 cd03802 GT1_AviGT4_like This f 100.0 3.7E-29 8E-34 251.0 32.8 311 14-461 17-332 (335)
52 cd03811 GT1_WabH_like This fam 100.0 1.1E-28 2.3E-33 244.6 35.0 333 7-446 2-346 (353)
53 cd03823 GT1_ExpE7_like This fa 100.0 1.2E-28 2.5E-33 247.0 35.3 322 16-447 15-344 (359)
54 PRK15490 Vi polysaccharide bio 100.0 1.1E-28 2.4E-33 260.5 34.4 283 98-463 277-573 (578)
55 PRK09922 UDP-D-galactose:(gluc 100.0 1.3E-28 2.9E-33 252.5 33.9 244 99-447 82-341 (359)
56 cd03825 GT1_wcfI_like This fam 100.0 6.4E-28 1.4E-32 244.3 34.4 278 100-460 50-359 (365)
57 cd03804 GT1_wbaZ_like This fam 100.0 1.5E-28 3.3E-33 250.2 29.9 252 99-457 81-348 (351)
58 TIGR03087 stp1 sugar transfera 100.0 2.8E-28 6E-33 253.4 32.2 344 13-459 12-390 (397)
59 TIGR02918 accessory Sec system 100.0 3.1E-28 6.6E-33 260.0 32.1 270 100-466 210-499 (500)
60 cd04946 GT1_AmsK_like This fam 100.0 5.2E-28 1.1E-32 252.7 31.9 266 100-459 126-405 (407)
61 PRK10125 putative glycosyl tra 100.0 2.2E-27 4.7E-32 247.9 36.0 350 4-461 1-400 (405)
62 PLN02501 digalactosyldiacylgly 100.0 1.3E-26 2.8E-31 247.5 37.2 350 4-460 322-704 (794)
63 cd04949 GT1_gtfA_like This fam 100.0 7.7E-27 1.7E-31 239.3 28.1 267 100-458 98-371 (372)
64 KOG1111 N-acetylglucosaminyltr 100.0 1.1E-26 2.3E-31 228.4 21.5 329 26-463 26-364 (426)
65 cd04950 GT1_like_1 Glycosyltra 99.9 1.1E-24 2.5E-29 224.8 34.2 359 1-463 1-369 (373)
66 PHA01630 putative group 1 glyc 99.9 7.4E-25 1.6E-29 222.8 27.8 233 126-461 68-326 (331)
67 PRK00726 murG undecaprenyldiph 99.9 1.4E-23 3.1E-28 214.7 31.5 328 5-452 2-344 (357)
68 cd03785 GT1_MurG MurG is an N- 99.9 1.8E-23 4E-28 212.5 30.6 325 7-450 2-342 (350)
69 TIGR01133 murG undecaprenyldip 99.9 6.9E-23 1.5E-27 208.1 30.6 324 6-451 2-340 (348)
70 PRK05749 3-deoxy-D-manno-octul 99.9 3.5E-22 7.5E-27 209.6 32.9 265 100-450 123-406 (425)
71 PHA01633 putative glycosyl tra 99.9 4.3E-22 9.3E-27 201.7 27.1 236 126-459 69-333 (335)
72 PRK09814 beta-1,6-galactofuran 99.9 9.7E-22 2.1E-26 200.2 23.5 242 100-451 63-317 (333)
73 PRK13609 diacylglycerol glucos 99.9 4.6E-21 1E-25 198.0 28.4 256 99-461 102-367 (380)
74 PF00534 Glycos_transf_1: Glyc 99.9 7.9E-22 1.7E-26 180.4 17.4 156 256-445 13-171 (172)
75 cd03793 GT1_Glycogen_synthase_ 99.9 2.3E-20 4.9E-25 197.8 30.5 323 100-463 147-584 (590)
76 cd03788 GT1_TPS Trehalose-6-Ph 99.9 8.2E-21 1.8E-25 201.5 25.6 281 100-462 130-458 (460)
77 KOG1387 Glycosyltransferase [C 99.9 6.2E-19 1.4E-23 172.8 29.9 289 100-467 149-463 (465)
78 PLN02605 monogalactosyldiacylg 99.9 2.8E-19 6E-24 185.4 28.0 266 99-465 98-377 (382)
79 TIGR02400 trehalose_OtsA alpha 99.8 5.2E-19 1.1E-23 187.1 29.1 276 100-461 126-452 (456)
80 cd01635 Glycosyltransferase_GT 99.8 1.3E-18 2.9E-23 163.2 25.3 120 263-412 109-229 (229)
81 PRK13608 diacylglycerol glucos 99.8 2.5E-18 5.4E-23 178.9 28.7 256 99-460 102-366 (391)
82 PRK00025 lpxB lipid-A-disaccha 99.8 2.8E-18 6E-23 177.0 27.7 249 99-447 83-356 (380)
83 COG0297 GlgA Glycogen synthase 99.8 1.1E-16 2.4E-21 168.8 33.6 293 100-468 129-479 (487)
84 KOG0853 Glycosyltransferase [C 99.8 5.2E-18 1.1E-22 176.7 21.5 293 100-461 144-463 (495)
85 PLN03063 alpha,alpha-trehalose 99.8 3.6E-17 7.7E-22 183.3 27.4 275 100-460 146-471 (797)
86 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 8E-17 1.7E-21 164.7 24.8 248 100-440 87-345 (363)
87 TIGR00236 wecB UDP-N-acetylglu 99.8 8.2E-17 1.8E-21 165.6 23.1 270 99-464 84-362 (365)
88 COG0438 RfaG Glycosyltransfera 99.8 1.2E-15 2.6E-20 149.2 29.6 281 102-463 84-374 (381)
89 PRK14501 putative bifunctional 99.7 7.1E-16 1.5E-20 172.4 24.7 166 260-463 267-460 (726)
90 TIGR00215 lpxB lipid-A-disacch 99.7 1.2E-14 2.6E-19 151.0 25.8 315 23-447 23-366 (385)
91 PF13692 Glyco_trans_1_4: Glyc 99.7 2.5E-16 5.5E-21 138.2 11.3 130 260-428 4-135 (135)
92 TIGR03713 acc_sec_asp1 accesso 99.6 3.5E-14 7.6E-19 152.3 19.6 162 257-458 318-514 (519)
93 TIGR02398 gluc_glyc_Psyn gluco 99.6 1.5E-12 3.2E-17 138.1 27.8 151 260-447 287-464 (487)
94 PRK12446 undecaprenyldiphospho 99.5 2.3E-11 5E-16 125.1 30.1 306 4-428 1-325 (352)
95 COG0707 MurG UDP-N-acetylgluco 99.5 5.5E-11 1.2E-15 122.0 32.0 314 16-447 12-339 (357)
96 PLN03064 alpha,alpha-trehalose 99.4 6.8E-11 1.5E-15 133.2 28.2 164 260-459 365-554 (934)
97 TIGR02094 more_P_ylases alpha- 99.3 1.4E-09 3.1E-14 118.5 31.6 184 253-464 385-599 (601)
98 PF13579 Glyco_trans_4_4: Glyc 99.3 1E-11 2.3E-16 110.3 11.1 152 19-195 5-160 (160)
99 TIGR03492 conserved hypothetic 99.3 3.3E-09 7.1E-14 110.8 27.3 250 100-444 92-376 (396)
100 PF13524 Glyco_trans_1_2: Glyc 99.2 3.8E-11 8.2E-16 99.0 9.0 86 371-460 5-91 (92)
101 PF05693 Glycogen_syn: Glycoge 99.2 1.3E-08 2.9E-13 108.4 27.4 274 157-459 212-575 (633)
102 PF13439 Glyco_transf_4: Glyco 99.2 3.2E-10 6.9E-15 102.4 13.2 165 11-200 7-176 (177)
103 TIGR02919 accessory Sec system 99.1 6.6E-09 1.4E-13 109.5 21.7 130 274-445 291-424 (438)
104 COG1519 KdtA 3-deoxy-D-manno-o 99.1 3.1E-07 6.7E-12 94.3 32.2 259 100-447 122-401 (419)
105 PF13528 Glyco_trans_1_3: Glyc 99.1 1.9E-08 4.1E-13 101.2 21.4 117 256-425 191-317 (318)
106 TIGR03568 NeuC_NnaA UDP-N-acet 99.0 3E-07 6.5E-12 95.1 29.0 239 100-427 92-338 (365)
107 PF13477 Glyco_trans_4_2: Glyc 99.0 2.1E-08 4.5E-13 88.4 15.4 128 19-174 11-139 (139)
108 cd04299 GT1_Glycogen_Phosphory 99.0 3.9E-07 8.4E-12 101.7 28.1 188 252-468 473-692 (778)
109 PF09314 DUF1972: Domain of un 98.9 8.8E-08 1.9E-12 89.2 18.8 173 4-196 1-184 (185)
110 cd03784 GT1_Gtf_like This fami 98.9 4.8E-07 1E-11 94.1 26.5 89 341-445 288-384 (401)
111 TIGR03590 PseG pseudaminic aci 98.9 4.2E-07 9.2E-12 90.5 23.0 99 258-398 171-270 (279)
112 TIGR01426 MGT glycosyltransfer 98.9 8E-07 1.7E-11 92.4 26.1 108 318-445 257-372 (392)
113 COG0763 LpxB Lipid A disacchar 98.7 6.9E-06 1.5E-10 83.6 23.0 326 10-447 6-359 (381)
114 PF04464 Glyphos_transf: CDP-G 98.6 1.6E-06 3.4E-11 89.6 16.3 252 123-464 95-368 (369)
115 PF00982 Glyco_transf_20: Glyc 98.6 3.5E-05 7.6E-10 82.2 26.7 158 259-447 277-456 (474)
116 TIGR00661 MJ1255 conserved hyp 98.6 7.2E-06 1.6E-10 83.1 20.6 77 341-427 229-313 (321)
117 COG0381 WecB UDP-N-acetylgluco 98.6 3.5E-05 7.5E-10 78.8 25.2 258 100-447 91-356 (383)
118 PRK10117 trehalose-6-phosphate 98.5 3.2E-05 7E-10 82.0 25.4 169 260-460 257-451 (474)
119 PF02684 LpxB: Lipid-A-disacch 98.5 2.7E-05 6E-10 80.4 24.2 310 10-428 3-340 (373)
120 PF02350 Epimerase_2: UDP-N-ac 98.5 1.2E-05 2.7E-10 82.5 20.9 252 100-440 66-326 (346)
121 PRK01021 lpxB lipid-A-disaccha 98.4 5.5E-05 1.2E-09 81.9 21.9 248 99-447 308-586 (608)
122 PLN02205 alpha,alpha-trehalose 98.3 0.00051 1.1E-08 78.3 28.6 163 260-458 341-547 (854)
123 COG0380 OtsA Trehalose-6-phosp 98.3 0.0017 3.7E-08 68.9 29.6 148 259-438 283-452 (486)
124 PF04007 DUF354: Protein of un 98.2 0.00048 1E-08 70.3 22.9 274 24-427 19-309 (335)
125 PHA03392 egt ecdysteroid UDP-g 98.2 0.0016 3.4E-08 70.5 27.4 90 341-445 346-445 (507)
126 COG4671 Predicted glycosyl tra 98.1 0.00037 8.1E-09 70.1 20.5 333 1-428 6-365 (400)
127 COG4641 Uncharacterized protei 98.1 0.0004 8.7E-09 70.6 20.3 112 341-456 237-352 (373)
128 COG1819 Glycosyl transferases, 98.1 0.00022 4.8E-09 74.9 19.3 141 253-447 233-383 (406)
129 COG3914 Spy Predicted O-linked 98.0 0.0036 7.9E-08 66.8 26.1 149 314-471 457-618 (620)
130 PF13844 Glyco_transf_41: Glyc 98.0 0.00022 4.8E-09 75.4 17.3 177 251-466 279-466 (468)
131 PLN02448 UDP-glycosyltransfera 98.0 0.021 4.5E-07 61.1 31.1 115 316-447 303-431 (459)
132 PRK02797 4-alpha-L-fucosyltran 97.9 0.0031 6.7E-08 63.0 22.3 230 100-412 38-274 (322)
133 PLN02208 glycosyltransferase f 97.9 0.051 1.1E-06 57.8 34.3 114 342-467 312-437 (442)
134 PLN02173 UDP-glucosyl transfer 97.8 0.077 1.7E-06 56.5 31.8 93 341-447 317-422 (449)
135 PRK10017 colanic acid biosynth 97.8 0.034 7.3E-07 58.9 28.6 103 332-447 297-408 (426)
136 PRK14089 ipid-A-disaccharide s 97.7 0.0016 3.5E-08 66.9 16.8 184 100-395 75-261 (347)
137 PF07429 Glyco_transf_56: 4-al 97.6 0.026 5.6E-07 57.3 23.2 246 99-427 76-332 (360)
138 TIGR02195 heptsyl_trn_II lipop 97.6 0.011 2.4E-07 60.1 20.6 102 255-394 172-276 (334)
139 PLN02562 UDP-glycosyltransfera 97.5 0.2 4.4E-06 53.4 32.8 79 341-428 328-413 (448)
140 PRK10422 lipopolysaccharide co 97.4 0.13 2.8E-06 52.8 26.8 100 257-394 183-287 (352)
141 COG1817 Uncharacterized protei 97.3 0.083 1.8E-06 52.8 22.5 288 14-428 6-314 (346)
142 PLN02410 UDP-glucoronosyl/UDP- 97.3 0.32 6.9E-06 51.9 31.6 93 341-447 324-424 (451)
143 PF08323 Glyco_transf_5: Starc 97.3 0.00039 8.5E-09 68.0 5.5 81 100-184 132-233 (245)
144 PF04101 Glyco_tran_28_C: Glyc 97.3 9E-06 1.9E-10 74.3 -5.8 89 341-443 55-155 (167)
145 PLN00414 glycosyltransferase f 97.2 0.41 8.9E-06 51.0 32.0 103 330-447 304-418 (446)
146 PLN03007 UDP-glucosyltransfera 97.2 0.48 1E-05 51.0 35.2 92 341-446 345-453 (482)
147 PLN02534 UDP-glycosyltransfera 97.1 0.62 1.4E-05 50.3 32.9 117 341-470 344-487 (491)
148 TIGR02201 heptsyl_trn_III lipo 97.0 0.27 5.8E-06 50.2 23.6 70 316-394 213-285 (344)
149 cd03789 GT1_LPS_heptosyltransf 97.0 0.071 1.5E-06 52.7 18.6 71 316-395 153-224 (279)
150 PF00201 UDPGT: UDP-glucoronos 96.8 0.0095 2.1E-07 64.0 11.5 96 315-428 306-409 (500)
151 COG3660 Predicted nucleoside-d 96.8 0.58 1.3E-05 45.9 22.1 111 254-395 158-272 (329)
152 PF06258 Mito_fiss_Elm1: Mitoc 96.7 0.22 4.8E-06 50.5 20.0 76 316-398 182-259 (311)
153 PRK10916 ADP-heptose:LPS hepto 96.7 0.21 4.5E-06 51.1 20.3 101 256-394 179-286 (348)
154 KOG3742 Glycogen synthase [Car 96.7 0.1 2.2E-06 54.3 17.2 118 330-455 456-602 (692)
155 COG0859 RfaF ADP-heptose:LPS h 96.7 0.24 5.3E-06 50.5 20.4 100 257-395 175-277 (334)
156 PLN02670 transferase, transfer 96.7 0.032 6.9E-07 59.8 14.1 108 343-464 341-460 (472)
157 COG3980 spsG Spore coat polysa 96.6 0.29 6.2E-06 48.5 18.8 65 316-394 187-252 (318)
158 TIGR03609 S_layer_CsaB polysac 96.6 0.95 2.1E-05 45.2 24.8 178 123-396 95-277 (298)
159 PLN02764 glycosyltransferase f 96.0 0.11 2.5E-06 55.3 13.6 89 348-447 323-423 (453)
160 COG0058 GlgP Glucan phosphoryl 95.9 0.1 2.2E-06 58.1 13.1 133 255-414 485-630 (750)
161 PLN03004 UDP-glycosyltransfera 95.9 0.095 2.1E-06 55.9 12.4 79 341-428 334-424 (451)
162 PLN00164 glucosyltransferase; 95.8 0.13 2.9E-06 55.3 13.5 93 343-447 341-447 (480)
163 PF12000 Glyco_trans_4_3: Gkyc 95.8 0.21 4.6E-06 46.1 12.9 155 32-197 2-166 (171)
164 PLN02210 UDP-glucosyl transfer 95.8 0.19 4.1E-06 53.7 14.1 78 342-428 325-415 (456)
165 PLN02555 limonoid glucosyltran 95.6 0.19 4.1E-06 54.1 13.7 93 341-447 337-443 (480)
166 PLN03015 UDP-glucosyl transfer 95.2 5.6 0.00012 42.7 32.5 93 343-447 337-442 (470)
167 PLN02554 UDP-glycosyltransfera 95.0 0.38 8.3E-06 51.8 13.5 78 341-427 342-439 (481)
168 PLN02167 UDP-glycosyltransfera 95.0 0.45 9.7E-06 51.1 14.0 78 342-428 341-434 (475)
169 PF10087 DUF2325: Uncharacteri 94.8 0.084 1.8E-06 43.9 6.3 82 319-401 2-88 (97)
170 PRK14986 glycogen phosphorylas 94.5 0.3 6.4E-06 55.2 11.3 144 253-421 539-703 (815)
171 PLN02863 UDP-glucoronosyl/UDP- 94.4 1.1 2.4E-05 48.2 15.0 77 342-427 344-432 (477)
172 PF01075 Glyco_transf_9: Glyco 94.0 0.15 3.2E-06 49.3 7.0 102 255-394 103-208 (247)
173 TIGR02193 heptsyl_trn_I lipopo 93.9 0.85 1.8E-05 45.9 12.6 99 256-394 178-279 (319)
174 cd04300 GT1_Glycogen_Phosphory 93.9 0.47 1E-05 53.6 11.4 143 253-420 526-689 (797)
175 PF04230 PS_pyruv_trans: Polys 93.7 6.5 0.00014 37.4 18.0 48 341-396 237-284 (286)
176 PLN02152 indole-3-acetate beta 93.5 12 0.00027 39.9 32.8 79 341-428 327-417 (455)
177 TIGR02093 P_ylase glycogen/sta 93.1 0.45 9.7E-06 53.7 9.5 144 253-421 523-687 (794)
178 PF00862 Sucrose_synth: Sucros 93.0 3 6.5E-05 44.7 14.9 76 100-178 400-480 (550)
179 PF11997 DUF3492: Domain of un 92.9 0.98 2.1E-05 44.8 10.9 86 98-187 169-265 (268)
180 PLN02207 UDP-glycosyltransfera 92.9 1.4 3.1E-05 47.3 12.7 78 341-427 332-425 (468)
181 PRK14985 maltodextrin phosphor 92.2 0.52 1.1E-05 53.1 8.5 137 260-420 531-688 (798)
182 PRK10964 ADP-heptose:LPS hepto 92.2 1.1 2.4E-05 45.2 10.5 69 316-395 210-279 (322)
183 PF08660 Alg14: Oligosaccharid 92.1 1.4 2.9E-05 40.7 9.9 68 100-181 91-161 (170)
184 PF00343 Phosphorylase: Carboh 91.9 4.4 9.4E-05 45.4 15.2 137 259-419 445-602 (713)
185 PF05159 Capsule_synth: Capsul 91.2 2.3 4.9E-05 41.9 11.2 70 314-395 153-225 (269)
186 PLN02992 coniferyl-alcohol glu 90.4 3 6.5E-05 44.9 12.0 78 342-428 339-427 (481)
187 PF10093 DUF2331: Uncharacteri 90.1 26 0.00057 36.4 19.2 72 315-396 209-290 (374)
188 KOG1192 UDP-glucuronosyl and U 86.7 7.8 0.00017 41.3 12.2 106 315-428 309-422 (496)
189 PF08288 PIGA: PIGA (GPI ancho 86.3 3.2 6.9E-05 33.9 6.6 73 53-137 13-85 (90)
190 KOG1021 Acetylglucosaminyltran 83.4 16 0.00035 39.2 12.6 125 315-445 289-424 (464)
191 COG1887 TagB Putative glycosyl 81.1 76 0.0016 33.3 17.6 83 352-445 277-367 (388)
192 PF06925 MGDG_synth: Monogalac 80.9 11 0.00024 34.2 9.0 69 99-188 87-158 (169)
193 PF11440 AGT: DNA alpha-glucos 80.8 65 0.0014 32.3 23.5 140 260-428 185-353 (355)
194 KOG3349 Predicted glycosyltran 79.8 23 0.00049 32.1 10.0 37 352-395 71-107 (170)
195 PF03016 Exostosin: Exostosin 76.5 3.7 8E-05 40.7 4.7 68 352-422 227-299 (302)
196 COG2327 WcaK Polysaccharide py 74.6 1.2E+02 0.0025 31.9 27.4 76 341-428 266-350 (385)
197 PF03401 TctC: Tripartite tric 70.2 73 0.0016 31.5 12.2 152 260-459 80-257 (274)
198 PRK00676 hemA glutamyl-tRNA re 70.2 57 0.0012 33.5 11.5 139 315-463 173-320 (338)
199 KOG4626 O-linked N-acetylgluco 63.8 1.2E+02 0.0026 33.8 12.7 125 314-447 786-919 (966)
200 COG0373 HemA Glutamyl-tRNA red 63.7 66 0.0014 34.0 10.7 88 315-403 177-280 (414)
201 COG1519 KdtA 3-deoxy-D-manno-o 63.1 1E+02 0.0023 32.5 11.9 105 252-395 44-153 (419)
202 PF15024 Glyco_transf_18: Glyc 61.8 23 0.00049 38.7 7.0 127 257-428 277-430 (559)
203 COG2247 LytB Putative cell wal 61.6 25 0.00054 35.6 6.8 76 314-396 75-163 (337)
204 PF01113 DapB_N: Dihydrodipico 60.8 9.2 0.0002 33.1 3.3 76 317-398 1-101 (124)
205 PF12038 DUF3524: Domain of un 59.3 53 0.0011 30.2 7.9 79 100-183 58-136 (168)
206 PF00389 2-Hacid_dh: D-isomer 58.6 68 0.0015 27.6 8.5 66 328-401 8-73 (133)
207 COG4370 Uncharacterized protei 58.2 48 0.001 33.6 8.0 216 156-447 168-394 (412)
208 PF00290 Trp_syntA: Tryptophan 58.0 1.1E+02 0.0023 30.3 10.5 126 316-447 115-255 (259)
209 PRK04020 rps2P 30S ribosomal p 57.1 1.1E+02 0.0024 29.2 10.0 82 317-403 68-153 (204)
210 TIGR00715 precor6x_red precorr 52.0 78 0.0017 31.1 8.5 93 326-426 159-255 (256)
211 PF02826 2-Hacid_dh_C: D-isome 50.7 78 0.0017 29.0 7.9 82 313-395 33-127 (178)
212 COG0569 TrkA K+ transport syst 50.3 1.3E+02 0.0028 28.8 9.6 131 6-187 2-134 (225)
213 TIGR02069 cyanophycinase cyano 50.1 82 0.0018 30.8 8.3 81 315-398 27-126 (250)
214 cd05565 PTS_IIB_lactose PTS_II 48.2 49 0.0011 27.6 5.5 72 319-395 4-79 (99)
215 PRK06718 precorrin-2 dehydroge 47.2 2.5E+02 0.0054 26.4 12.6 81 315-400 9-106 (202)
216 PF00852 Glyco_transf_10: Glyc 46.7 1.5E+02 0.0032 30.6 10.0 115 316-438 176-304 (349)
217 CHL00200 trpA tryptophan synth 46.7 3E+02 0.0065 27.2 13.3 125 257-414 92-232 (263)
218 COG1927 Mtd Coenzyme F420-depe 46.0 2.8E+02 0.006 26.6 11.7 77 314-413 29-115 (277)
219 PF04413 Glycos_transf_N: 3-De 45.6 1.5E+02 0.0032 27.6 9.0 76 100-188 94-170 (186)
220 PRK13940 glutamyl-tRNA reducta 45.6 1.6E+02 0.0035 31.1 10.2 83 315-402 180-278 (414)
221 KOG3339 Predicted glycosyltran 45.1 1.5E+02 0.0033 27.9 8.5 35 9-43 42-76 (211)
222 PF10933 DUF2827: Protein of u 44.6 1.1E+02 0.0024 31.7 8.3 118 317-451 223-349 (364)
223 TIGR01035 hemA glutamyl-tRNA r 44.5 2.2E+02 0.0047 30.0 11.1 87 315-402 179-282 (417)
224 KOG1050 Trehalose-6-phosphate 42.9 4E+02 0.0086 30.5 13.2 141 260-428 278-440 (732)
225 PTZ00182 3-methyl-2-oxobutanat 40.5 1E+02 0.0022 31.9 7.6 106 317-425 234-354 (355)
226 TIGR00262 trpA tryptophan synt 39.3 3.8E+02 0.0082 26.2 11.3 126 257-414 88-228 (256)
227 TIGR01012 Sa_S2_E_A ribosomal 39.2 95 0.0021 29.3 6.6 83 316-403 61-147 (196)
228 TIGR02014 BchZ chlorophyllide 38.6 4.8E+02 0.01 28.1 12.6 139 315-465 279-433 (468)
229 PRK08057 cobalt-precorrin-6x r 37.3 1.1E+02 0.0025 29.9 7.1 77 343-426 171-247 (248)
230 cd01080 NAD_bind_m-THF_DH_Cycl 37.3 80 0.0017 28.9 5.7 51 314-367 42-93 (168)
231 PLN02735 carbamoyl-phosphate s 36.9 7.5E+02 0.016 29.8 15.0 43 3-45 573-620 (1102)
232 PF03033 Glyco_transf_28: Glyc 36.6 21 0.00045 30.7 1.7 51 8-62 2-52 (139)
233 PRK00045 hemA glutamyl-tRNA re 36.5 3.8E+02 0.0082 28.3 11.4 87 315-402 181-285 (423)
234 PRK08306 dipicolinate synthase 36.0 1.2E+02 0.0026 30.4 7.2 85 317-404 3-111 (296)
235 cd00027 BRCT Breast Cancer Sup 35.8 1.5E+02 0.0032 21.1 6.1 62 317-395 2-65 (72)
236 PTZ00408 NAD-dependent deacety 35.7 2.7E+02 0.0059 27.1 9.4 57 341-397 151-208 (242)
237 cd03146 GAT1_Peptidase_E Type 34.5 3.1E+02 0.0068 25.8 9.5 80 315-397 30-123 (212)
238 PF13905 Thioredoxin_8: Thiore 34.5 2.3E+02 0.0049 22.3 8.0 32 315-346 34-65 (95)
239 TIGR03029 EpsG chain length de 33.9 4.5E+02 0.0097 25.5 11.6 31 10-41 107-140 (274)
240 PRK05562 precorrin-2 dehydroge 33.5 4.5E+02 0.0097 25.3 12.7 81 316-401 25-123 (223)
241 PRK10494 hypothetical protein; 33.4 1.5E+02 0.0033 29.1 7.4 79 314-398 119-211 (259)
242 cd03129 GAT1_Peptidase_E_like 33.1 2.9E+02 0.0062 25.9 9.0 82 316-397 29-123 (210)
243 cd05564 PTS_IIB_chitobiose_lic 32.9 1.3E+02 0.0028 24.7 5.7 70 319-395 3-78 (96)
244 PRK06249 2-dehydropantoate 2-r 32.5 99 0.0021 31.0 6.0 45 6-60 7-51 (313)
245 cd01408 SIRT1 SIRT1: Eukaryoti 32.0 2E+02 0.0044 27.7 7.8 57 341-399 152-212 (235)
246 PRK14138 NAD-dependent deacety 31.9 2.8E+02 0.006 27.0 8.8 80 341-425 155-240 (244)
247 PRK05282 (alpha)-aspartyl dipe 31.8 3.4E+02 0.0074 26.3 9.3 66 329-398 51-123 (233)
248 PF01975 SurE: Survival protei 31.6 77 0.0017 29.9 4.7 36 7-44 3-38 (196)
249 PLN02929 NADH kinase 31.3 1.2E+02 0.0026 30.6 6.3 91 329-428 37-137 (301)
250 TIGR02690 resist_ArsH arsenica 30.6 4.9E+02 0.011 24.9 13.3 172 253-469 22-216 (219)
251 cd05014 SIS_Kpsf KpsF-like pro 30.4 1.3E+02 0.0027 25.4 5.6 75 318-396 2-82 (128)
252 PF02571 CbiJ: Precorrin-6x re 30.3 1.4E+02 0.003 29.3 6.4 72 343-423 175-248 (249)
253 COG0111 SerA Phosphoglycerate 30.1 2.3E+02 0.0051 28.9 8.2 73 315-389 141-227 (324)
254 COG1908 FrhD Coenzyme F420-red 30.0 1.9E+02 0.0041 25.2 6.2 32 329-362 81-114 (132)
255 cd03145 GAT1_cyanophycinase Ty 29.6 4.5E+02 0.0096 24.9 9.7 69 329-397 47-126 (217)
256 PRK05447 1-deoxy-D-xylulose 5- 29.6 2.8E+02 0.0061 29.1 8.7 75 316-395 27-122 (385)
257 PLN02928 oxidoreductase family 29.5 1.8E+02 0.0039 29.9 7.4 79 315-394 158-261 (347)
258 PF13241 NAD_binding_7: Putati 29.3 52 0.0011 27.3 2.8 83 315-403 6-100 (103)
259 PLN00203 glutamyl-tRNA reducta 29.2 4.6E+02 0.01 28.7 10.7 85 316-401 266-373 (519)
260 TIGR01007 eps_fam capsular exo 29.0 4.6E+02 0.0099 24.1 10.0 40 2-42 15-55 (204)
261 PRK09212 pyruvate dehydrogenas 29.0 2.7E+02 0.0058 28.4 8.5 71 317-388 202-279 (327)
262 TIGR00853 pts-lac PTS system, 28.2 1.4E+02 0.003 24.6 5.1 71 318-395 6-82 (95)
263 TIGR01658 EYA-cons_domain eyes 28.2 1.4E+02 0.003 29.4 5.7 43 312-361 226-268 (274)
264 PF11071 DUF2872: Protein of u 28.0 83 0.0018 27.8 3.8 73 354-426 65-140 (141)
265 PRK05331 putative phosphate ac 27.9 4E+02 0.0087 27.3 9.5 52 267-348 9-62 (334)
266 PF10649 DUF2478: Protein of u 27.9 73 0.0016 29.1 3.7 39 356-394 87-129 (159)
267 COG1703 ArgK Putative periplas 27.9 6.6E+02 0.014 25.6 16.1 101 18-138 65-177 (323)
268 PF04413 Glycos_transf_N: 3-De 27.7 77 0.0017 29.5 4.0 101 258-395 22-125 (186)
269 PF01488 Shikimate_DH: Shikima 27.4 1.2E+02 0.0025 26.4 4.9 60 329-396 47-108 (135)
270 PRK00048 dihydrodipicolinate r 27.3 1.5E+02 0.0032 29.0 6.1 42 352-396 51-92 (257)
271 PLN02683 pyruvate dehydrogenas 27.2 2.1E+02 0.0046 29.5 7.4 105 318-427 230-351 (356)
272 PRK06932 glycerate dehydrogena 27.0 2.1E+02 0.0044 29.0 7.2 80 315-395 146-233 (314)
273 COG1154 Dxs Deoxyxylulose-5-ph 26.8 1.9E+02 0.0041 32.1 7.1 124 303-427 487-623 (627)
274 PRK13789 phosphoribosylamine-- 26.7 7.8E+02 0.017 26.0 14.2 38 1-44 1-38 (426)
275 KOG3244 Protein involved in ub 26.6 40 0.00086 32.6 1.7 76 373-467 179-254 (267)
276 PRK06487 glycerate dehydrogena 26.5 2.2E+02 0.0047 28.8 7.3 80 315-395 147-233 (317)
277 cd05005 SIS_PHI Hexulose-6-pho 26.5 3.4E+02 0.0073 24.6 8.0 73 318-396 35-110 (179)
278 TIGR00161 conserved hypothetic 26.2 6E+02 0.013 24.5 11.3 98 329-445 97-212 (238)
279 PTZ00254 40S ribosomal protein 26.1 2.6E+02 0.0057 27.4 7.4 81 317-403 72-157 (249)
280 COG3340 PepE Peptidase E [Amin 26.1 5.7E+02 0.012 24.6 9.3 64 329-398 52-128 (224)
281 PRK08410 2-hydroxyacid dehydro 25.9 2.8E+02 0.006 28.0 7.9 80 315-395 144-232 (311)
282 PRK15482 transcriptional regul 25.3 3.5E+02 0.0076 26.6 8.4 79 318-397 137-218 (285)
283 PRK06849 hypothetical protein; 25.3 7.6E+02 0.016 25.4 13.2 37 1-42 1-37 (389)
284 PRK10840 transcriptional regul 25.0 5.4E+02 0.012 23.6 10.8 110 316-428 3-126 (216)
285 PF00072 Response_reg: Respons 25.0 3.5E+02 0.0076 21.4 8.0 99 320-423 2-112 (112)
286 TIGR01470 cysG_Nterm siroheme 24.7 5.9E+02 0.013 23.9 12.8 40 357-398 65-104 (205)
287 cd01020 TroA_b Metal binding p 24.7 4.2E+02 0.0092 25.8 8.8 90 352-447 43-134 (264)
288 PRK10017 colanic acid biosynth 24.6 6.4E+02 0.014 26.7 10.6 43 353-395 109-155 (426)
289 PF07302 AroM: AroM protein; 24.4 4.2E+02 0.0091 25.6 8.3 109 260-396 92-210 (221)
290 PRK13234 nifH nitrogenase redu 24.1 81 0.0018 31.5 3.6 38 1-42 1-41 (295)
291 TIGR02853 spore_dpaA dipicolin 24.0 4.8E+02 0.01 26.0 9.1 74 315-392 150-237 (287)
292 COG0287 TyrA Prephenate dehydr 23.5 1.9E+02 0.0041 28.8 6.1 37 3-45 2-38 (279)
293 PRK05647 purN phosphoribosylgl 23.5 3.3E+02 0.0072 25.6 7.5 54 5-62 2-58 (200)
294 PF00205 TPP_enzyme_M: Thiamin 23.2 1.9E+02 0.0042 24.8 5.5 50 318-368 14-84 (137)
295 TIGR03609 S_layer_CsaB polysac 23.2 6.4E+02 0.014 24.7 9.9 73 314-395 26-106 (298)
296 PF05014 Nuc_deoxyrib_tr: Nucl 22.9 75 0.0016 26.6 2.7 42 356-397 56-98 (113)
297 PRK10886 DnaA initiator-associ 22.9 3.3E+02 0.0071 25.6 7.2 53 314-368 109-163 (196)
298 PRK04523 N-acetylornithine car 22.7 8.4E+02 0.018 25.0 13.3 45 316-367 199-250 (335)
299 PF02441 Flavoprotein: Flavopr 22.6 1.1E+02 0.0023 26.5 3.6 36 5-42 1-36 (129)
300 COG2099 CobK Precorrin-6x redu 22.6 7E+02 0.015 24.6 9.5 137 268-426 112-252 (257)
301 PRK05749 3-deoxy-D-manno-octul 22.5 3.7E+02 0.008 27.8 8.4 102 257-395 50-154 (425)
302 COG2984 ABC-type uncharacteriz 22.5 2.8E+02 0.0061 28.3 6.9 109 314-428 156-279 (322)
303 PF04392 ABC_sub_bind: ABC tra 22.5 7.4E+02 0.016 24.3 15.1 94 329-428 150-251 (294)
304 PF12146 Hydrolase_4: Putative 22.4 99 0.0021 24.4 3.1 38 5-43 16-53 (79)
305 PRK10834 vancomycin high tempe 22.4 5.9E+02 0.013 24.8 9.0 78 314-396 80-169 (239)
306 COG1647 Esterase/lipase [Gener 22.3 7.3E+02 0.016 24.2 9.4 38 5-43 15-52 (243)
307 PRK09004 FMN-binding protein M 22.1 1.3E+02 0.0027 26.8 4.1 37 4-40 1-37 (146)
308 PF00289 CPSase_L_chain: Carba 21.6 1.8E+02 0.0038 24.6 4.7 48 318-368 4-51 (110)
309 cd01410 SIRT7 SIRT7: Eukaryoti 21.6 2.2E+02 0.0047 26.9 5.8 55 341-396 132-190 (206)
310 PRK05568 flavodoxin; Provision 21.3 2E+02 0.0043 24.8 5.2 39 4-42 1-39 (142)
311 PRK08305 spoVFB dipicolinate s 21.1 83 0.0018 29.7 2.8 41 1-42 2-42 (196)
312 PF07801 DUF1647: Protein of u 21.1 2.8E+02 0.0062 24.8 6.0 44 314-361 87-130 (142)
313 PRK13398 3-deoxy-7-phosphohept 21.1 8.1E+02 0.017 24.2 10.0 61 329-396 81-142 (266)
314 cd01425 RPS2 Ribosomal protein 21.0 6.7E+02 0.015 23.3 9.7 84 316-403 56-166 (193)
315 KOG0069 Glyoxylate/hydroxypyru 20.8 2.2E+02 0.0047 29.3 5.9 82 315-397 161-255 (336)
316 TIGR02772 Ku_bact Ku protein, 20.7 3.9E+02 0.0084 26.3 7.5 89 295-393 49-138 (258)
317 cd05312 NAD_bind_1_malic_enz N 20.6 8.1E+02 0.017 24.5 9.7 38 354-394 96-138 (279)
318 PRK02910 light-independent pro 20.4 4.8E+02 0.01 28.4 8.9 70 317-393 159-238 (519)
319 COG0489 Mrp ATPases involved i 20.4 8.2E+02 0.018 24.0 10.6 27 14-41 68-94 (265)
320 TIGR03837 efp_adjacent_2 conse 20.3 5.6E+02 0.012 26.7 8.7 46 342-396 243-288 (371)
321 TIGR03127 RuMP_HxlB 6-phospho 20.3 4.8E+02 0.01 23.5 7.7 73 318-396 32-107 (179)
322 PF12738 PTCB-BRCT: twin BRCT 20.2 3.5E+02 0.0077 19.7 5.8 59 318-394 2-61 (63)
323 TIGR01361 DAHP_synth_Bsub phos 20.2 8.3E+02 0.018 23.9 9.8 111 264-396 29-140 (260)
324 PRK15409 bifunctional glyoxyla 20.1 3.1E+02 0.0068 27.8 7.0 80 315-395 144-236 (323)
325 PRK13761 hypothetical protein; 20.0 8.2E+02 0.018 23.8 11.7 81 314-404 94-187 (248)
No 1
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-65 Score=492.65 Aligned_cols=431 Identities=54% Similarity=0.913 Sum_probs=388.6
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHH
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
|.+++++||+++||+|+||||+|+|.+||++ |++|+++++.++.+.+++..+++|++|.++..+ .+...++.+..
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~----~~~~~p~~~~l 83 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP----FLQGGPRVLFL 83 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCChHHHhcCCceEEEeCCCCc----ccCCCchhhhh
Confidence 5678999999999999999999999999998 999999999999999999999999999999433 34445566778
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhh-hhhhhcCCCchHHHHHHHH
Q 011979 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYT-LLSLSLGRRSHFVSIYRWI 159 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (473)
..|.++|+++++|.++. ...+|++.++|||++|++.++.+.+.+++.++++|||+++|+ .++...+..+++.+..+|+
T Consensus 84 ~lKvf~Qfl~Ll~aL~~-~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~ 162 (444)
T KOG2941|consen 84 PLKVFWQFLSLLWALFV-LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWL 162 (444)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHH
Confidence 89999999999999998 589999999999999999999999999999999999999997 6777788999999999999
Q ss_pred HHHHhhcCCEEEEcCHHHHHHHHHHhCC-ceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 160 EKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 160 e~~~~~~ad~vi~vS~~~~~~l~~~~g~-~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
|+++.+.||+-.|||++|++++.++||+ .+.++|+.|++ ++++.+++|+++.+++.. ..++...-.+.+..
T Consensus 163 E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps--~~~~l~~~H~lf~~l~~d------~~~f~ar~~q~~~~ 234 (444)
T KOG2941|consen 163 EKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS--KPTPLDEQHELFMKLAGD------HSPFRAREPQDKAL 234 (444)
T ss_pred HHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC--CCCchhHHHHHHhhhccc------cchhhhcccccchh
Confidence 9999999999999999999999999997 59999999887 788899999999998742 11233332344556
Q ss_pred cchhhhcccc-cccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCE
Q 011979 239 DETIFTSLAG-IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (473)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
+++.|+.... +++...+.+|++++.+.+|++..++.+|++|+..+.+. .-.++...|.+
T Consensus 235 ~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~--------------------~~~~~~~lP~l 294 (444)
T KOG2941|consen 235 ERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQ--------------------LYDKTHNLPSL 294 (444)
T ss_pred hhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhh--------------------hhhccCCCCcE
Confidence 7788886544 78888999999999999999999999999999987542 11123357999
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
..+|.|+||.++.+.+.++++++.+|.+..+|++.||++.++.+||++|++|++|+|.++|||+.+++.||+||||.++.
T Consensus 295 lciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk 374 (444)
T KOG2941|consen 295 LCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK 374 (444)
T ss_pred EEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011979 398 CIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 466 (473)
Q Consensus 398 ~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 466 (473)
++.|+|+|+.||++++|.++++++|..++++|+++.+.+.++++|+++.. +.+|+.+|++++.++++.
T Consensus 375 cl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~-e~RW~~~W~~~~~P~~~~ 442 (444)
T KOG2941|consen 375 CLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQ-ELRWDESWERTALPLVMD 442 (444)
T ss_pred hHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH-hhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999974 999999999999998764
No 2
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.8e-47 Score=400.20 Aligned_cols=411 Identities=54% Similarity=0.922 Sum_probs=315.0
Q ss_pred CCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHH
Q 011979 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (473)
Q Consensus 2 ~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (473)
.++||+|++.+.++|.+.|+.++|.+|+++ ||+|+|+++.+..+..+.....+|.++.++. .+ ....+..+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~~~~~~~~ 76 (415)
T cd03816 1 PKRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPHDEILSNPNITIHPLPP--PP-QRLNKLPFLLFAP 76 (415)
T ss_pred CCccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCCHHHhcCCCEEEEECCC--Cc-cccccchHHHHHH
Confidence 379999999999999999999999999997 9999999987655433334577999999882 21 0122334444444
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHH
Q 011979 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (473)
...+.+++.+++.+..+ .+||+||+|+|+..++..+++++++..+.|+|+++|+.++.......+..+.+.++++++|+
T Consensus 77 ~~~~~~~~~~~~~l~~~-~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (415)
T cd03816 77 LKVLWQFFSLLWLLYKL-RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEK 155 (415)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHH
Confidence 45555555555555443 68999999998888877778888888899999999998654443333344556678889999
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCC---ceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 162 YYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~g~---~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
.+++.+|.++|+|+.+++++.+ ++. ++.+|||++.+.|.|...+........++...
T Consensus 156 ~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~~~f~p~~~~~~~~~~~~~~~~~------------------- 215 (415)
T cd03816 156 LFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPPEQFRPLPLEEKHELFLKLAKTF------------------- 215 (415)
T ss_pred HHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCHHHceeCcHHHHHHHHHhccccc-------------------
Confidence 9999999999999999999987 444 38999999766777664332221111100000
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 318 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
.............++++.+++++|++.+.||++.|++|+..+.+.. . .....|+++
T Consensus 216 ---~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~-------------------~--~~~~~~~i~ 271 (415)
T cd03816 216 ---LTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSA-------------------A--TGPKLPKLL 271 (415)
T ss_pred ---cccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhh-------------------c--ccccCCCEE
Confidence 0000000000123345558889999999999999999999986510 0 000247899
Q ss_pred EEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 319 FIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 319 l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
|+|+|+|+..+++++.+++++++++.++++|++.++++.+|+.||++++|..++.++++|++++||||||+|||+++.++
T Consensus 272 l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~ 351 (415)
T cd03816 272 CIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKC 351 (415)
T ss_pred EEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCC
Confidence 99999999999999999999998888886669999999999999999986555567889999999999999999999999
Q ss_pred cccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 399 IEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
..|++.++.+|++++|+++++++|.+++++.+ +++.+++|++++++.. +++|+.+|++++-++
T Consensus 352 ~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~-~~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~ 414 (415)
T cd03816 352 IDELVKHGENGLVFGDSEELAEQLIDLLSNFP-NRGKLNSLKKGAQEES-ELRWDENWDRVVGPL 414 (415)
T ss_pred HHHHhcCCCCEEEECCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhh-hcCHHHHHHHHhhhh
Confidence 99999999999999999999999999998410 1789999999999987 999999999988776
No 3
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.5e-45 Score=378.60 Aligned_cols=371 Identities=79% Similarity=1.259 Sum_probs=290.4
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHH
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
|+.++++.|++++|+|.++|+..++..++++.+++|+|+|+.+.....+.....+|++++++. +.......+..+.+..
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~~~~~~~~~~~~~~ 79 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRLLQRLPRVLYALAL 79 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cccccccccchHHHHH
Confidence 899999999999999999999999999999833589999988766555666677899999984 2222234444444445
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHH
Q 011979 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 160 (473)
+....+.+..++|.+..+..+||+||+++|+......++++++++.+.|+|+++|+.++............+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 159 (371)
T PLN02275 80 LLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYE 159 (371)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHH
Confidence 55555566666776655568999999999887776667888888888999999999864333222233455567888999
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccc
Q 011979 161 KYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (473)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
+.+++.+|.++++|+.+++.+.+.+|.++.++||++.+.|.|.....
T Consensus 160 ~~~~~~ad~ii~~S~~~~~~l~~~~g~~i~vi~n~~~~~f~~~~~~~--------------------------------- 206 (371)
T PLN02275 160 RHYGKMADGHLCVTKAMQHELDQNWGIRATVLYDQPPEFFRPASLEI--------------------------------- 206 (371)
T ss_pred HHHHhhCCEEEECCHHHHHHHHHhcCCCeEEECCCCHHHcCcCCchh---------------------------------
Confidence 99999999999999999999988778888899998656665542110
Q ss_pred hhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEE
Q 011979 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (473)
...++.+.+++++|++.+.||++.+++|+..+..++.+..+.++ +.+...-..|+++|+
T Consensus 207 -----------~~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~----------~~~~~~~~~~~i~l~ 265 (371)
T PLN02275 207 -----------RLRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESD----------SASGKQSLYPRLLFI 265 (371)
T ss_pred -----------cccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcccccc----------ccccccccCCCeEEE
Confidence 01122344788999999999999999999988654332211110 000000124789999
Q ss_pred EEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccc
Q 011979 321 ITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 400 (473)
Q Consensus 321 ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~ 400 (473)
|+|+|+.++++++++++++++++.|.++|++.++++.+|+.||++|+|..++.++++|++++||||||+|||+++.++.+
T Consensus 266 ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~ 345 (371)
T PLN02275 266 ITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG 345 (371)
T ss_pred EEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH
Confidence 99999999999999999999889998877999999999999999998654456789999999999999999999999999
Q ss_pred cceecCCceEEeCCHHHHHHHHHHHH
Q 011979 401 ELVKVDKNGLLFSSSSELADQLLMLF 426 (473)
Q Consensus 401 e~i~~~~~G~~~~~~~~la~~i~~l~ 426 (473)
|+|.++.+|++++|+++++++|.+++
T Consensus 346 eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 346 ELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHccCCCCeEEECCHHHHHHHHHHhC
Confidence 99999999999999999999998764
No 4
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.3e-37 Score=322.77 Aligned_cols=378 Identities=17% Similarity=0.178 Sum_probs=266.3
Q ss_pred EEEEE---ecCCCC-ChhHHHHHHHHHhhCCCcEEEEecCCCCCC-----------cccccCCCEEEEEeecCCCCCCCC
Q 011979 7 ACVVV---LGDLGR-SPRMQYQALSLARQMSLEVDVVAYGGSKPH-----------AAILEHPSIHIHTMTQWPTIPRGL 71 (473)
Q Consensus 7 ~~i~~---~~~~g~-s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~-----------~~~~~~~~i~i~~~~~~~~~~~~~ 71 (473)
++++. .++.|+ ..++..++..|.++ ||+|+|+|.....+. ......+++++++++.+.. ...
T Consensus 3 Ilii~~~~~P~~~g~~~~~~~l~~~L~~~-G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~--~~~ 79 (412)
T PRK10307 3 ILVYGINYAPELTGIGKYTGEMAEWLAAR-GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVP--KQP 79 (412)
T ss_pred EEEEecCCCCCccchhhhHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCC--CCc
Confidence 44444 355555 34555678888887 999999996521110 0112256899999884321 111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhh-hhhcCCCc
Q 011979 72 PKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLL-SLSLGRRS 150 (473)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-~~~~~~~~ 150 (473)
....+.... ..+.......+.. ..+ .+||+||++.|+..... ++.+++++.++|+|+++||++.... .....+.+
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~Div~~~~p~~~~~~-~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~ 155 (412)
T PRK10307 80 SGLKRLLHL-GSFALSSFFPLLA-QRR-WRPDRVIGVVPTLFCAP-GARLLARLSGARTWLHIQDYEVDAAFGLGLLKGG 155 (412)
T ss_pred cHHHHHHHH-HHHHHHHHHHHhh-ccC-CCCCEEEEeCCcHHHHH-HHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCc
Confidence 111111111 0111110000111 112 68999999987644333 4667778888999999999853221 11111234
Q ss_pred hHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcc
Q 011979 151 HFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQ 226 (473)
Q Consensus 151 ~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~ 226 (473)
.+.++..++++.+.+.||.++++|+.+++.+.+. +. ++.+++|+.+ +.|.+.....+..++.+++
T Consensus 156 ~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~---------- 224 (412)
T PRK10307 156 KVARLATAFERSLLRRFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSEVARFQPVADADVDALRAQLG---------- 224 (412)
T ss_pred HHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHc-CCCcccEEEECCCcCHhhcCCCCccchHHHHHHcC----------
Confidence 4556677889999999999999999999998764 44 3788999944 5565543222333444443
Q ss_pred cccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhh
Q 011979 227 DCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEI 306 (473)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (473)
+++ .+.+++|+|++.+.||++.|++|++.+.+
T Consensus 225 --------------------------~~~-~~~~i~~~G~l~~~kg~~~li~a~~~l~~--------------------- 256 (412)
T PRK10307 225 --------------------------LPD-GKKIVLYSGNIGEKQGLELVIDAARRLRD--------------------- 256 (412)
T ss_pred --------------------------CCC-CCEEEEEcCccccccCHHHHHHHHHHhcc---------------------
Confidence 222 23489999999999999999999998754
Q ss_pred ccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHH
Q 011979 307 SDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMF 385 (473)
Q Consensus 307 ~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eam 385 (473)
.++++|+|+|+|+..++++++++++++++|.|+|. ++.++++.+|+.||++++|.... .+..+|++++|||
T Consensus 257 -------~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~-~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eam 328 (412)
T PRK10307 257 -------RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPL-QPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNML 328 (412)
T ss_pred -------CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCC-CCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHH
Confidence 47899999999999999999999999988999997 99999999999999999953321 1123799999999
Q ss_pred hcCCcEEEeccCc--cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 386 GCGLPVCAVSYSC--IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 386 a~G~PvI~~~~~~--~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
|||+|||+|+.+| ..+++. ++|++++ |+++++++|.+++++ ++.+++|++++++.. +.|+|+...+++.
T Consensus 329 a~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 402 (412)
T PRK10307 329 ASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ----ALLRPKLGTVAREYAERTLDKENVLRQFI 402 (412)
T ss_pred HcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999998765 457776 6899985 799999999999985 889999999999977 5799998877765
Q ss_pred HHHH
Q 011979 461 KPLI 464 (473)
Q Consensus 461 ~~~~ 464 (473)
+.+-
T Consensus 403 ~~~~ 406 (412)
T PRK10307 403 ADIR 406 (412)
T ss_pred HHHH
Confidence 4443
No 5
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1e-36 Score=323.55 Aligned_cols=370 Identities=19% Similarity=0.219 Sum_probs=263.1
Q ss_pred CCCCeEEEEEec---CCCC-ChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHH
Q 011979 2 GRRGRACVVVLG---DLGR-SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKP 77 (473)
Q Consensus 2 ~~~~~~~i~~~~---~~g~-s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 77 (473)
++|++++++... ..|| ..|+...+..|.++ ||+|+|+|.....+ . ...++.+.....++.+.. ......
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~-G~eV~vlt~~~~~~--~--~~~g~~v~~~~~~~~~~~--~~~~~~ 129 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREM-GDEVLVVTTDEGVP--Q--EFHGAKVIGSWSFPCPFY--QKVPLS 129 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHC-CCeEEEEecCCCCC--c--cccCceeeccCCcCCccC--CCceee
Confidence 445555443222 2333 45666777888886 99999999764321 1 224666655542221111 111100
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHH
Q 011979 78 VLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYR 157 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 157 (473)
+....++ ...+ +..+||+||+|+|.... ..+.++++..++|+|+++|+....... .. ....+.+...
T Consensus 130 ~~~~~~l--------~~~i-~~~kpDiIh~~~~~~~~--~~~~~~ak~~~ip~V~~~h~~~~~~~~-~~-~~~~~~~~~~ 196 (465)
T PLN02871 130 LALSPRI--------ISEV-ARFKPDLIHASSPGIMV--FGALFYAKLLCVPLVMSYHTHVPVYIP-RY-TFSWLVKPMW 196 (465)
T ss_pred ccCCHHH--------HHHH-HhCCCCEEEECCCchhH--HHHHHHHHHhCCCEEEEEecCchhhhh-cc-cchhhHHHHH
Confidence 0000011 1112 23789999999864322 235556667789999999986422111 01 1122222223
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHh---CCceEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCc
Q 011979 158 WIEKYYGKMANGCLCVTQAMQHELAQNW---GIKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGM 233 (473)
Q Consensus 158 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~---g~~~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (473)
.+++.+.+.+|.++++|+.+++.+.+.. ..++.+++||. .+.|.|... ..+++.++.
T Consensus 197 ~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~--~~~~~~~~~----------------- 257 (465)
T PLN02871 197 DIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFR--SEEMRARLS----------------- 257 (465)
T ss_pred HHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccc--cHHHHHHhc-----------------
Confidence 4567788899999999999999998754 23488999994 466765421 122232221
Q ss_pred CCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc
Q 011979 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
...++++ +++|+|++.+.||++.++++++.+
T Consensus 258 ------------------~~~~~~~-~i~~vGrl~~~K~~~~li~a~~~~------------------------------ 288 (465)
T PLN02871 258 ------------------GGEPEKP-LIVYVGRLGAEKNLDFLKRVMERL------------------------------ 288 (465)
T ss_pred ------------------CCCCCCe-EEEEeCCCchhhhHHHHHHHHHhC------------------------------
Confidence 0122334 899999999999999999988764
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
++++|+|+|+|+..+.++++++.. +|.|+|+ ++.+++..+|+.||++|+ +|..|++|++++||||||+|||+
T Consensus 289 -~~~~l~ivG~G~~~~~l~~~~~~~---~V~f~G~-v~~~ev~~~~~~aDv~V~---pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 289 -PGARLAFVGDGPYREELEKMFAGT---PTVFTGM-LQGDELSQAYASGDVFVM---PSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred -CCcEEEEEeCChHHHHHHHHhccC---CeEEecc-CCHHHHHHHHHHCCEEEE---CCcccccCcHHHHHHHcCCCEEE
Confidence 689999999999888888877653 7999998 999999999999999999 67789999999999999999999
Q ss_pred eccCccccceec---CCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011979 394 VSYSCIEELVKV---DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 394 ~~~~~~~e~i~~---~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 468 (473)
++.+|+.|++.+ +.+|++++ |+++++++|.+++++ ++.+++|++++++..++|+|+...+++.+..|.+++
T Consensus 361 s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~ 436 (465)
T PLN02871 361 ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD----PELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAI 436 (465)
T ss_pred cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999998 99999986 799999999999985 899999999999988899999999998887788777
Q ss_pred hcc
Q 011979 469 SQF 471 (473)
Q Consensus 469 ~~~ 471 (473)
..+
T Consensus 437 ~~~ 439 (465)
T PLN02871 437 WFW 439 (465)
T ss_pred HHH
Confidence 654
No 6
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.5e-35 Score=307.55 Aligned_cols=365 Identities=17% Similarity=0.167 Sum_probs=261.2
Q ss_pred CCCCh-hHHHHHHHHHhhCCCcEEEEecCCCCCC-cccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 011979 15 LGRSP-RMQYQALSLARQMSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (473)
Q Consensus 15 ~g~s~-r~~~~a~~L~~~~g~eV~vi~~~~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
.||.+ .+..++..|.++ ||+|+|+|....... ......+++++++++..+.......+.+..+. ..... ++
T Consensus 19 ~GG~e~~v~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~ 91 (405)
T TIGR03449 19 AGGMNVYILETATELARR-GIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLC---AFTGG---VL 91 (405)
T ss_pred CCCceehHHHHHHHHhhC-CCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHH---HHHHH---HH
Confidence 45544 444567788886 999999997543221 12223568999988732211111111111111 11111 11
Q ss_pred HHHhhh-hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcC-CCchHHHHHHHHHHHHhhcCCEE
Q 011979 93 WFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG-RRSHFVSIYRWIEKYYGKMANGC 170 (473)
Q Consensus 93 ~~~~~~-~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~ad~v 170 (473)
...+.+ ..++|+||+|. .....++.++++..++|+|+++|+.+. ....... ...+.....+++++...+.+|.+
T Consensus 92 ~~~~~~~~~~~Diih~h~---~~~~~~~~~~~~~~~~p~v~t~h~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~v 167 (405)
T TIGR03449 92 RAEARHEPGYYDLIHSHY---WLSGQVGWLLRDRWGVPLVHTAHTLAA-VKNAALADGDTPEPEARRIGEQQLVDNADRL 167 (405)
T ss_pred HHHhhccCCCCCeEEech---HHHHHHHHHHHHhcCCCEEEeccchHH-HHHHhccCCCCCchHHHHHHHHHHHHhcCeE
Confidence 122221 24799999998 333445677777788999999998742 1110110 11122233456678888999999
Q ss_pred EEcCHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcc
Q 011979 171 LCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (473)
Q Consensus 171 i~vS~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+++|+..++.+.+.++.+ +.+++||.+ +.|.+.+ +...+.+++
T Consensus 168 i~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~---~~~~~~~~~------------------------------ 214 (405)
T TIGR03449 168 IANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGD---RATERARLG------------------------------ 214 (405)
T ss_pred EECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCc---HHHHHHhcC------------------------------
Confidence 999999888887767653 789999944 5565442 222333332
Q ss_pred cccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC--EEEEEEcC
Q 011979 247 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR--LLFIITGK 324 (473)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ivG~ 324 (473)
++++++ +++|+|++.+.||++.+++|+..+.+. .|+ ++|+|+|+
T Consensus 215 ------~~~~~~-~i~~~G~l~~~K~~~~li~a~~~l~~~---------------------------~~~~~~~l~ivG~ 260 (405)
T TIGR03449 215 ------LPLDTK-VVAFVGRIQPLKAPDVLLRAVAELLDR---------------------------DPDRNLRVIVVGG 260 (405)
T ss_pred ------CCCCCc-EEEEecCCCcccCHHHHHHHHHHHHhh---------------------------CCCcceEEEEEeC
Confidence 223333 899999999999999999999998662 455 99999996
Q ss_pred ----C-CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 325 ----G-PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 325 ----g-~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
| +..++++++++++++ ++|.|+|. ++.+++..+|+.||++++ ||..|++|++++|||++|+|||+++.++
T Consensus 261 ~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~l~~ad~~v~---ps~~E~~g~~~lEAma~G~Pvi~~~~~~ 336 (405)
T TIGR03449 261 PSGSGLATPDALIELAAELGIADRVRFLPP-RPPEELVHVYRAADVVAV---PSYNESFGLVAMEAQACGTPVVAARVGG 336 (405)
T ss_pred CCCCcchHHHHHHHHHHHcCCCceEEECCC-CCHHHHHHHHHhCCEEEE---CCCCCCcChHHHHHHHcCCCEEEecCCC
Confidence 3 455778999999999 79999998 999999999999999999 6778999999999999999999999999
Q ss_pred cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011979 399 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 466 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 466 (473)
..|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++..++|+|+...+++.+ ++.+
T Consensus 337 ~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~----~~~~~~~~~~~~~~~~~fsw~~~~~~~~~-~y~~ 401 (405)
T TIGR03449 337 LPVAVADGETGLLVDGHDPADWADALARLLDD----PRTRIRMGAAAVEHAAGFSWAATADGLLS-SYRD 401 (405)
T ss_pred cHhhhccCCceEECCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHH
Confidence 999999999999986 799999999999985 88899999999988888999988877553 4443
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.7e-35 Score=306.10 Aligned_cols=352 Identities=12% Similarity=0.062 Sum_probs=249.5
Q ss_pred cCCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 011979 13 GDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (473)
Q Consensus 13 ~~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
++.|++.| +..++..|+++ ||+|+|+|.............+++++++++... .............. ..+.
T Consensus 11 p~~GG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~--~~~~~~~~~~~~~~-~~l~----- 81 (398)
T cd03796 11 PNLGGVETHIYQLSQCLIKR-GHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVV--FYNQSTLPTFFGTF-PLLR----- 81 (398)
T ss_pred cccccHHHHHHHHHHHHHHc-CCeeEEEeccCCcCCCcccccCceeEEEeccee--ccCCccccchhhhH-HHHH-----
Confidence 45566544 44567888886 999999996533221122335688998887322 11111111111111 1111
Q ss_pred HHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEE
Q 011979 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (473)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 171 (473)
..+ +..+||+||+|++...... .+.++++..++|+|++.|+... .. ........++.++..+.+|.++
T Consensus 82 --~~~-~~~~~DiIh~~~~~~~~~~-~~~~~~~~~~~~~v~t~h~~~~------~~--~~~~~~~~~~~~~~~~~~d~ii 149 (398)
T cd03796 82 --NIL-IRERITIVHGHQAFSALAH-EALLHARTMGLKTVFTDHSLFG------FA--DASSIHTNKLLRFSLADVDHVI 149 (398)
T ss_pred --HHH-HhcCCCEEEECCCCchHHH-HHHHHhhhcCCcEEEEeccccc------cc--chhhHHhhHHHHHhhccCCEEE
Confidence 111 2378999999986543222 3556677778999999998631 11 1111223455677778999999
Q ss_pred EcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccc
Q 011979 172 CVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLA 247 (473)
Q Consensus 172 ~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
++|+..++.+....+. ++.++|||.+ +.|.+...
T Consensus 150 ~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~------------------------------------------ 187 (398)
T cd03796 150 CVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPS------------------------------------------ 187 (398)
T ss_pred EecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcc------------------------------------------
Confidence 9999998866443443 3789999854 44433210
Q ss_pred ccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC
Q 011979 248 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (473)
Q Consensus 248 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 327 (473)
. .++...+++|+|++.+.||++.+++|+..+.+ ..|+++|+|+|+|+.
T Consensus 188 ----~-~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~---------------------------~~~~~~l~i~G~g~~ 235 (398)
T cd03796 188 ----K-RDNDKITIVVISRLVYRKGIDLLVGIIPEICK---------------------------KHPNVRFIIGGDGPK 235 (398)
T ss_pred ----c-CCCCceEEEEEeccchhcCHHHHHHHHHHHHh---------------------------hCCCEEEEEEeCCch
Confidence 0 11123489999999999999999999998876 368999999999998
Q ss_pred hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecC
Q 011979 328 KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 406 (473)
Q Consensus 328 ~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~ 406 (473)
.+.++++++++++ ++|.|+|. ++.+++..+|+.||++++ +|..|++|++++||||||+|||+++.++.+|++.++
T Consensus 236 ~~~l~~~~~~~~l~~~v~~~G~-~~~~~~~~~l~~ad~~v~---pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~ 311 (398)
T cd03796 236 RILLEEMREKYNLQDRVELLGA-VPHERVRDVLVQGHIFLN---TSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD 311 (398)
T ss_pred HHHHHHHHHHhCCCCeEEEeCC-CCHHHHHHHHHhCCEEEe---CChhhccCHHHHHHHHcCCCEEECCCCCchhheeCC
Confidence 8999999999999 78999998 999999999999999999 677899999999999999999999999999999876
Q ss_pred CceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHh
Q 011979 407 KNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 407 ~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~ 468 (473)
..++..+|.++++++|.+++++ ......+++++++.. ++|+|+...+++. +++++++
T Consensus 312 ~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~l~ 369 (398)
T cd03796 312 MILLAEPDVESIVRKLEEAISI----LRTGKHDPWSFHNRVKKMYSWEDVAKRTE-KVYDRIL 369 (398)
T ss_pred ceeecCCCHHHHHHHHHHHHhC----hhhhhhHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHh
Confidence 5544445899999999999985 333434555555543 6899999888865 4444444
No 8
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.1e-35 Score=300.31 Aligned_cols=356 Identities=18% Similarity=0.190 Sum_probs=256.5
Q ss_pred CCeEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHH
Q 011979 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~-a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 82 (473)
+++++|+...++||++++... +..|.++ |+++.|++..+...........++.+++++. .. . ........+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~--~~---~-~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPAD-RYRHAVVALTEVSAFRKRIQRPDVAFYALHK--QP---G-KDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhcccc-ccceEEEEcCCCChhHHHHHhcCceEEEeCC--CC---C-CChHHHHHHH
Confidence 456667777778888887754 5556665 9999999865433322334466889888872 11 1 1111122222
Q ss_pred HHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeE-EEEecCchhhhhhhhcCCCchHHHHHHHHHH
Q 011979 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (473)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~-i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (473)
+.+ +..+||+||+|++... .+.++++..++|. +++.|.... .........+.++++
T Consensus 75 ~~l------------~~~~~Divh~~~~~~~----~~~~~~~~~~~~~~i~~~h~~~~-------~~~~~~~~~~~~~~~ 131 (374)
T TIGR03088 75 RLL------------RQLRPDIVHTRNLAAL----EAQLPAALAGVPARIHGEHGRDV-------FDLDGSNWKYRWLRR 131 (374)
T ss_pred HHH------------HHhCCCEEEEcchhHH----HHHHHHHhcCCCeEEEeecCccc-------ccchhhHHHHHHHHH
Confidence 222 2378999999985322 2334455555564 455564411 111111123456677
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCCc---eEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCC
Q 011979 162 YYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQK 237 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~g~~---~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+.+.+|.++++|+.+++++.+.++.+ +.+++|+. .+.|.+... .+...+...
T Consensus 132 ~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-~~~~~~~~~---------------------- 188 (374)
T TIGR03088 132 LYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRG-DRSPILPPD---------------------- 188 (374)
T ss_pred HHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCcc-chhhhhHhh----------------------
Confidence 777889999999999999998877654 68899994 455654421 111111110
Q ss_pred ccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCE
Q 011979 238 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..++.+.+++|+||+.+.||++.+++|+..+.++. +-..+++
T Consensus 189 ---------------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~-----------------------~~~~~~~ 230 (374)
T TIGR03088 189 ---------------FFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQL-----------------------PEGAERL 230 (374)
T ss_pred ---------------cCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhC-----------------------cccccce
Confidence 11223449999999999999999999999987630 0012479
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 318 LFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
+|+++|+|+..+.+++.++++++ +++.|.|. .+|+..+|+.||++|+ ||..|+||++++|||+||+|||+|+.
T Consensus 231 ~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---pS~~Eg~~~~~lEAma~G~Pvv~s~~ 304 (374)
T TIGR03088 231 RLVIVGDGPARGACEQMVRAAGLAHLVWLPGE---RDDVPALMQALDLFVL---PSLAEGISNTILEAMASGLPVIATAV 304 (374)
T ss_pred EEEEecCCchHHHHHHHHHHcCCcceEEEcCC---cCCHHHHHHhcCEEEe---ccccccCchHHHHHHHcCCCEEEcCC
Confidence 99999999988999999999999 68889887 7899999999999999 68889999999999999999999999
Q ss_pred CccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 397 SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 397 ~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
++..|++.++.+|++++ |+++++++|..++++ ++.+.++++++++.. +.|+|+...+++.
T Consensus 305 ~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 367 (374)
T TIGR03088 305 GGNPELVQHGVTGALVPPGDAVALARALQPYVSD----PAARRAHGAAGRARAEQQFSINAMVAAYA 367 (374)
T ss_pred CCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999985 799999999999885 888999999998876 6899998877744
No 9
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.8e-35 Score=301.60 Aligned_cols=365 Identities=18% Similarity=0.206 Sum_probs=252.0
Q ss_pred CCeEEEEEecCCCCChhH-HHHHHHHHhhCCCcEEEEecCCCCCCc-ccccCCCEEEEEeecCCCCCCCCcchhHHHHHH
Q 011979 4 RGRACVVVLGDLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHA-AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~-~~~a~~L~~~~g~eV~vi~~~~~~~~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (473)
||++++...-..||++|+ ..+|..|+++ ||+|+|+|........ ......++.++....+. +.....+ ...+
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~----~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWL-PRSIFGR----FHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhC-CCeEEEEcCCCCchhcchhccCCeeEEEEEeEEE-cchhhHh----HHHH
Confidence 344444433346777776 5678888887 9999999965322111 11122236555554211 1111111 1111
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchH----HHHHH
Q 011979 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF----VSIYR 157 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~----~~~~~ 157 (473)
...+......++....+..++|+||++.. ... ..+.....+.|++++.|.... .. ....+.. .....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~---~~~--~~~~~~~~~~~~i~~~h~~~~-~~---~~~~~~~~~~~~~~~~ 145 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQV---SAC--VPLLKLFSPSKILFYCHFPDQ-LL---AQRGSLLKRLYRKPFD 145 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCc---chH--HHHHHHhcCCcEEEEEecChH-Hh---cCCCcHHHHHHHHHHH
Confidence 11111111111111234478999999873 222 112233344899999995421 11 1122222 23456
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc----eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCC
Q 011979 158 WIEKYYGKMANGCLCVTQAMQHELAQNWGIK----ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNG 232 (473)
Q Consensus 158 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~----~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 232 (473)
++|+...+.||.++++|+.+++.+.+.++.. ..+++|+.+ +.|.+...+. .....
T Consensus 146 ~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~---~~~~~----------------- 205 (392)
T cd03805 146 WLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP---DPGLL----------------- 205 (392)
T ss_pred HHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc---ccccc-----------------
Confidence 7889999999999999999999998766532 348899843 5554432110 00000
Q ss_pred cCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccc
Q 011979 233 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 312 (473)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
...+ ....++|+|++.+.||++.+++|+..+.++
T Consensus 206 -------------------~~~~-~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~-------------------------- 239 (392)
T cd03805 206 -------------------IPKS-GKKTFLSINRFERKKNIALAIEAFAILKDK-------------------------- 239 (392)
T ss_pred -------------------ccCC-CceEEEEEeeecccCChHHHHHHHHHHHhh--------------------------
Confidence 1122 334899999999999999999999999773
Q ss_pred cC---CCEEEEEEcCCCCh--------HHHHHHHHH-cCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcH
Q 011979 313 LY---PRLLFIITGKGPDK--------ESYEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 313 ~~---~~~~l~ivG~g~~~--------~~l~~~~~~-~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~ 379 (473)
. |+++|+++|+|+.. +++++.+++ +++ ++|.|+|+ ++.+++..+|+.||++++ +|..|+||+
T Consensus 240 -~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~-~~~~~~~~~l~~ad~~l~---~s~~E~~g~ 314 (392)
T cd03805 240 -LAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS-ISDSQKELLLSSARALLY---TPSNEHFGI 314 (392)
T ss_pred -cccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC-CChHHHHHHHhhCeEEEE---CCCcCCCCc
Confidence 3 78999999998653 678888998 888 79999998 999999999999999999 677899999
Q ss_pred HHHHHHhcCCcEEEeccCccccceecCCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHH
Q 011979 380 KVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 457 (473)
Q Consensus 380 kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 457 (473)
+++||||||+|||+++.++..|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++.. ++|+|+...+
T Consensus 315 ~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~ 390 (392)
T cd03805 315 VPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAND----PDLADRMGAAGRKRVKEKFSTEAFAE 390 (392)
T ss_pred hHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999999999999999986 799999999999985 788999999998866 6799987765
Q ss_pred H
Q 011979 458 E 458 (473)
Q Consensus 458 ~ 458 (473)
+
T Consensus 391 ~ 391 (392)
T cd03805 391 R 391 (392)
T ss_pred h
Confidence 4
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=8.7e-34 Score=299.00 Aligned_cols=363 Identities=19% Similarity=0.122 Sum_probs=240.2
Q ss_pred hHHHHHHHHHhhCCC--cEEEEecCCCCC-------CcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 011979 20 RMQYQALSLARQMSL--EVDVVAYGGSKP-------HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM 90 (473)
Q Consensus 20 r~~~~a~~L~~~~g~--eV~vi~~~~~~~-------~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (473)
.+..++..|+++ || +|+|+|...... .......+|+++++++..+ ..... .......+......
T Consensus 31 ~v~~La~~L~~~-G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~--~~~~~-~~~~~~~~~~~~~~--- 103 (439)
T TIGR02472 31 YVLELARALARR-SEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGP--RRYLR-KELLWPYLDELADN--- 103 (439)
T ss_pred HHHHHHHHHHhC-CCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCC--CCCcC-hhhhhhhHHHHHHH---
Confidence 445567788886 97 999999542110 1111225799999998322 11111 11111111111111
Q ss_pred HHHHHhhh-hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcC---CCchHHHH---H--HHHHH
Q 011979 91 LLWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG---RRSHFVSI---Y--RWIEK 161 (473)
Q Consensus 91 ~~~~~~~~-~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~---~~~~~~~~---~--~~~e~ 161 (473)
+. ..+.+ ..+||+||+|.+ ....++.++++..++|+|++.|+.+......... ....+.+. . ...++
T Consensus 104 l~-~~~~~~~~~~DvIH~h~~---~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 104 LL-QHLRQQGHLPDLIHAHYA---DAGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HH-HHHHHcCCCCCEEEEcch---hHHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 11 11222 137999999983 3444577777778899999999864211100000 00111111 1 12477
Q ss_pred HHhhcCCEEEEcCHHHHHHH-HHHhC---CceEEeeCC-CCCCcccCChh-HHHHHHHhhhhhccCCCCcccccCCCcCC
Q 011979 162 YYGKMANGCLCVTQAMQHEL-AQNWG---IKATVLYDQ-PPEFFHPTSLE-EKHELFCRLNKILHQPLGVQDCVSNGMEG 235 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l-~~~~g---~~~~vi~n~-~~~~f~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 235 (473)
..++.+|.++++|+...... ....+ .++.+|||| +.+.|.|.... ....++..+...
T Consensus 180 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~----------------- 242 (439)
T TIGR02472 180 ETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPF----------------- 242 (439)
T ss_pred HHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhh-----------------
Confidence 78889999999997654333 32223 248899999 44667664221 111222111100
Q ss_pred CCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCC
Q 011979 236 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 315 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
...++.+ +++|+||+.+.||++.|++|++.+.+. . ..+
T Consensus 243 ----------------~~~~~~~-~i~~vGrl~~~Kg~~~li~A~~~l~~~--------------------~-----~~~ 280 (439)
T TIGR02472 243 ----------------LKDPEKP-PILAISRPDRRKNIPSLVEAYGRSPKL--------------------Q-----EMA 280 (439)
T ss_pred ----------------ccccCCc-EEEEEcCCcccCCHHHHHHHHHhChhh--------------------h-----hhc
Confidence 1123333 899999999999999999999875321 0 023
Q ss_pred CEEEEEEcCCCChH-----------HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcC----cEEEEeccCCCCCCCcH
Q 011979 316 RLLFIITGKGPDKE-----------SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 316 ~~~l~ivG~g~~~~-----------~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~a----di~v~~~~~s~~e~~p~ 379 (473)
++. +|+|+|++.+ .++++++++++ ++|.|.|. ++.++++.+|+.| |++|+ ||..|+||+
T Consensus 281 ~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~-~~~~~~~~~~~~a~~~~Dv~v~---pS~~E~fg~ 355 (439)
T TIGR02472 281 NLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKH-HRPDDVPELYRLAARSRGIFVN---PALTEPFGL 355 (439)
T ss_pred cEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCC-CCHHHHHHHHHHHhhcCCEEec---ccccCCccc
Confidence 443 3678886532 23456788888 79999998 8999999999987 99999 788899999
Q ss_pred HHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHH
Q 011979 380 KVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEW 456 (473)
Q Consensus 380 kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~ 456 (473)
+++||||||+|||+|+.+|+.|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++.. ++|+|+...
T Consensus 356 ~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~fsw~~~~ 431 (439)
T TIGR02472 356 TLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSD----SSQWQLWSRNGIEGVRRHYSWDAHV 431 (439)
T ss_pred HHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999985 799999999999985 889999999998865 679998877
Q ss_pred HHHHH
Q 011979 457 EEHAK 461 (473)
Q Consensus 457 ~~~~~ 461 (473)
+++..
T Consensus 432 ~~~~~ 436 (439)
T TIGR02472 432 EKYLR 436 (439)
T ss_pred HHHHH
Confidence 76543
No 11
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=9.7e-34 Score=288.87 Aligned_cols=353 Identities=18% Similarity=0.228 Sum_probs=250.8
Q ss_pred eEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHH
Q 011979 6 RACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~~~-a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (473)
+++++..+.+||.+++... +..|.++ ||+|+|+|..... ......+++.++.++....+ ......... ..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~ 72 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSSRPF--RLDEYSPNIFFHEVEVPQYP---LFQYPPYDL---AL 72 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecCCCc--chhhhccCeEEEEecccccc---hhhcchhHH---HH
Confidence 3555667788888877754 5677776 9999999965321 11122446665544411110 000000000 01
Q ss_pred HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhh---CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHH
Q 011979 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL---RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (473)
.. .+..++ +..+||+||+|.+. +....+.+..+. .++|+|++.|+...... +.. ..++++.+
T Consensus 73 ~~----~l~~~i-~~~~~divh~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~~----~~~~~~~~ 137 (371)
T cd04962 73 AS----KIAEVA-KRYKLDLLHVHYAV--PHAVAAYLAREILGKKDLPVVTTLHGTDITLV----GQD----PSFQPATR 137 (371)
T ss_pred HH----HHHHHH-hcCCccEEeecccC--CccHHHHHHHHhcCcCCCcEEEEEcCCccccc----ccc----ccchHHHH
Confidence 11 111222 23789999998743 222223333332 37999999997632111 111 11234566
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCC--ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 162 YYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~g~--~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
...+.+|.++++|+.+++.+.+.++. ++.+++|+.+ ..|.+... ...+.+++
T Consensus 138 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~---~~~~~~~~---------------------- 192 (371)
T cd04962 138 FSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPD---EALKRRLG---------------------- 192 (371)
T ss_pred HHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCch---HHHHHhcC----------------------
Confidence 77788999999999999998876543 3789999844 33433321 11222221
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 318 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
..++. .+++|+|++.+.||++.+++|+..+.+ .++++
T Consensus 193 --------------~~~~~-~~il~~g~l~~~K~~~~li~a~~~l~~----------------------------~~~~~ 229 (371)
T cd04962 193 --------------APEGE-KVLIHISNFRPVKRIDDVIRIFAKVRK----------------------------EVPAR 229 (371)
T ss_pred --------------CCCCC-eEEEEecccccccCHHHHHHHHHHHHh----------------------------cCCce
Confidence 22233 389999999999999999999999876 25689
Q ss_pred EEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 319 FIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 319 l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
++++|.|++.+.+++.++++++ ++|.|.|. .+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.+
T Consensus 230 l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~v~---ps~~E~~~~~~~EAma~g~PvI~s~~~ 303 (371)
T cd04962 230 LLLVGDGPERSPAERLARELGLQDDVLFLGK---QDHVEELLSIADLFLL---PSEKESFGLAALEAMACGVPVVASNAG 303 (371)
T ss_pred EEEEcCCcCHHHHHHHHHHcCCCceEEEecC---cccHHHHHHhcCEEEe---CCCcCCCccHHHHHHHcCCCEEEeCCC
Confidence 9999999999999999999998 78999998 5789999999999999 677899999999999999999999999
Q ss_pred ccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHHH
Q 011979 398 CIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEHA 460 (473)
Q Consensus 398 ~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~ 460 (473)
+..|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++. .+.++|+...+++.
T Consensus 304 ~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 304 GIPEVVKHGETGFLVDVGDVEAMAEYALSLLED----DELWQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999996 799999999999985 88999999999987 47899887776644
No 12
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=5.1e-33 Score=290.42 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=213.0
Q ss_pred hhCCCCEEEEeCCCchhHHHHHHHHHh--hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCH
Q 011979 98 KIASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 98 ~~~~~Dvi~~~~p~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (473)
+..++|+||+|..+. ...+.+++. ..+.|+++++|+... .... ....++...+...+.+|.++++|+
T Consensus 115 ~~~~~diihaH~~~~---~~~~~~~~~~~~~~~~~~~t~Hg~d~-------~~~~-~~~~~~~~~~~~~~~ad~vv~~S~ 183 (406)
T PRK15427 115 TPFVADVFIAHFGPA---GVTAAKLRELGVLRGKIATIFHGIDI-------SSRE-VLNHYTPEYQQLFRRGDLMLPISD 183 (406)
T ss_pred ccCCCCEEEEcCChH---HHHHHHHHHhCCCCCCeEEEEccccc-------ccch-hhhhhhHHHHHHHHhCCEEEECCH
Confidence 346899999998432 223344443 234567889997621 1111 111112234445678999999999
Q ss_pred HHHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 176 AMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 176 ~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
..++.+.+ +|.+ +.+++||.+ +.|.+...
T Consensus 184 ~~~~~l~~-~g~~~~ki~vi~nGvd~~~f~~~~~---------------------------------------------- 216 (406)
T PRK15427 184 LWAGRLQK-MGCPPEKIAVSRMGVDMTRFSPRPV---------------------------------------------- 216 (406)
T ss_pred HHHHHHHH-cCCCHHHEEEcCCCCCHHHcCCCcc----------------------------------------------
Confidence 99999976 4653 789999954 44533210
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
..++.+..++|+|++.+.||++.+++|++.+.++ .++++++|+|+|+..+++
T Consensus 217 -~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~ivG~G~~~~~l 268 (406)
T PRK15427 217 -KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQ---------------------------GVAFRYRILGIGPWERRL 268 (406)
T ss_pred -ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEECchhHHHH
Confidence 0122345899999999999999999999998773 688999999999999999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC---CCCCCcHHHHHHHhcCCcEEEeccCccccceecCC
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 407 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s---~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~ 407 (473)
++.++++++ ++|.|+|. ++++++.++|+.||++|+|.... ..|++|++++||||||+|||+|+.+|+.|++.++.
T Consensus 269 ~~~~~~~~l~~~V~~~G~-~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~ 347 (406)
T PRK15427 269 RTLIEQYQLEDVVEMPGF-KPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADK 347 (406)
T ss_pred HHHHHHcCCCCeEEEeCC-CCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCC
Confidence 999999999 79999987 99999999999999999953221 14899999999999999999999999999999999
Q ss_pred ceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 408 NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 408 ~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
+|++++ |+++++++|.++++. |++.+++|++++++.. ++|+|+...++..
T Consensus 348 ~G~lv~~~d~~~la~ai~~l~~~---d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~ 400 (406)
T PRK15427 348 SGWLVPENDAQALAQRLAAFSQL---DTDELAPVVKRAREKVETDFNQQVINRELA 400 (406)
T ss_pred ceEEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999996 799999999999983 4889999999999877 6799887776644
No 13
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=5.1e-33 Score=285.59 Aligned_cols=361 Identities=20% Similarity=0.202 Sum_probs=254.3
Q ss_pred CCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcc-cccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 011979 14 DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (473)
Q Consensus 14 ~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
+.||.++ +...+..|++. ||+|+|++......... ....+++.+++++..+ ....++. ............
T Consensus 19 ~~GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~---- 90 (398)
T cd03800 19 DTGGQNVYVLELARALARL-GHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGP--AEYLPKE-ELWPYLDEFADD---- 90 (398)
T ss_pred CCCceeehHHHHHHHHhcc-CceEEEEEecCCcccCCccccccceEEEeccccc--ccCCChh-hcchhHHHHHHH----
Confidence 3566554 45677888886 99999999654432211 2345688888887321 1111110 011111111111
Q ss_pred HHHHhhhh-CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEE
Q 011979 92 LWFLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGC 170 (473)
Q Consensus 92 ~~~~~~~~-~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 170 (473)
+...+.+. .+||+||++.+. ...++..+++..++|+|++.|+.......................++.+.+.+|.+
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~---~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 167 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWD---SGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRV 167 (398)
T ss_pred HHHHHHhcCCCccEEEEecCc---cchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEE
Confidence 11122221 289999999742 33346666777889999999987421110000011101122345678888899999
Q ss_pred EEcCHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcc
Q 011979 171 LCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (473)
Q Consensus 171 i~vS~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+++|+..++.+.+.++.+ +.+++|+.+ +.|.+..... ..+..++
T Consensus 168 i~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~--~~~~~~~------------------------------ 215 (398)
T cd03800 168 IASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAE--ARRARLL------------------------------ 215 (398)
T ss_pred EEcCHHHHHHHHHHccccccccEEECCCCCccceecccchh--hHHHhhc------------------------------
Confidence 999999999998876543 678999843 5554432111 0011111
Q ss_pred cccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC
Q 011979 247 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 326 (473)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~ 326 (473)
.++++ .+++|+|++.+.||++.+++|+..+.++ .++++|+++|+|+
T Consensus 216 ------~~~~~-~~i~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~~~ 261 (398)
T cd03800 216 ------RDPDK-PRILAVGRLDPRKGIDTLIRAYAELPEL---------------------------RERANLVIVGGPR 261 (398)
T ss_pred ------cCCCC-cEEEEEcccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEECCC
Confidence 12233 3899999999999999999999999773 5789999999886
Q ss_pred Ch------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc
Q 011979 327 DK------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 399 (473)
Q Consensus 327 ~~------~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~ 399 (473)
.. ..+++.++.+++ ++|.|+|. ++.+++..+++.||++++ ||..|++|++++|||+||+|||+++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adi~l~---ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~ 337 (398)
T cd03800 262 DDILAMDEEELRELARELGVIDRVDFPGR-VSREDLPALYRAADVFVN---PALYEPFGLTALEAMACGLPVVATAVGGP 337 (398)
T ss_pred CcchhhhhHHHHHHHHhcCCCceEEEecc-CCHHHHHHHHHhCCEEEe---cccccccCcHHHHHHhcCCCEEECCCCCH
Confidence 42 345677888888 79999998 999999999999999999 67789999999999999999999999999
Q ss_pred ccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011979 400 EELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 459 (473)
Q Consensus 400 ~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 459 (473)
.+++.++++|++++ |+++++++|.+++++ ++.+++|++++++.. ++++|+...+++
T Consensus 338 ~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 338 RDIVVDGVTGLLVDPRDPEALAAALRRLLTD----PALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred HHHccCCCCeEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999996 699999999999985 889999999999887 789988776654
No 14
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1e-32 Score=286.44 Aligned_cols=357 Identities=16% Similarity=0.146 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011979 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (473)
Q Consensus 19 ~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (473)
+....+|..|+++ ||+|+++|.......+. |+++++++..+..........................+..+..+
T Consensus 11 ~~~~~la~~L~~~-G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
T cd03818 11 GQFRHLAPALAAQ-GHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAK 84 (396)
T ss_pred hhHHHHHHHHHHC-CCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999997 99999999876542211 79999988432211111111111111111111222223333333
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhh--cC---CCch--HH--HHHHHHHHHHhhcCCE
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS--LG---RRSH--FV--SIYRWIEKYYGKMANG 169 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~--~~---~~~~--~~--~~~~~~e~~~~~~ad~ 169 (473)
..+||+||+|..+.. . ..+.....++|+|...|-+. ...... +. .... .. +...++.....+.+|.
T Consensus 85 ~~~pdvi~~h~~~~~--~--~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 159 (396)
T cd03818 85 GFRPDVIVAHPGWGE--T--LFLKDVWPDAPLIGYFEFYY-RAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADA 159 (396)
T ss_pred CCCCCEEEECCccch--h--hhHHHhCCCCCEEEEEeeee-cCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCE
Confidence 457999999984321 1 11222235688877554221 110000 00 1111 01 1112224566788999
Q ss_pred EEEcCHHHHHHHHHHhCCceEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccc
Q 011979 170 CLCVTQAMQHELAQNWGIKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAG 248 (473)
Q Consensus 170 vi~vS~~~~~~l~~~~g~~~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
+|++|+.+++.+.+.++.++.+|+||. .+.|.+.... ........
T Consensus 160 vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~-~~~~~~~~--------------------------------- 205 (396)
T cd03818 160 GVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQA-RLRLPNGR--------------------------------- 205 (396)
T ss_pred EECCCHHHHhhCcHhhccceEEeCCCccccccCCCchh-hhcccccc---------------------------------
Confidence 999999999998877777799999994 4667654211 11000000
Q ss_pred cccccCCCCCeEEEEEee-ccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC
Q 011979 249 IDVFLKPNRPALVVSSTS-WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (473)
Q Consensus 249 ~~~~~~~~~~~~i~~~G~-~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 327 (473)
.+.++.+ +++|+|| +.+.||++.+++|+..+.++ .|+++|+|+|++..
T Consensus 206 ---~~~~~~~-~i~~vgR~l~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~lvivG~~~~ 254 (396)
T cd03818 206 ---VLTPGDE-VITFVARNLEPYRGFHVFMRALPRLLRA---------------------------RPDARVVIVGGDGV 254 (396)
T ss_pred ---cCCCCCe-EEEEECCCcccccCHHHHHHHHHHHHHH---------------------------CCCcEEEEEcCCCc
Confidence 1123333 8999997 99999999999999998773 68999999997421
Q ss_pred --------hH-HHHHHHHHcC----CCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 328 --------KE-SYEEKIRRLR----LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 328 --------~~-~l~~~~~~~~----l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
.+ ..++.+++++ .++|.|+|. +|.+++..+|+.||++++ +|..+++|++++||||||+|||+|
T Consensus 255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~-v~~~~~~~~l~~adv~v~---~s~~e~~~~~llEAmA~G~PVIas 330 (396)
T cd03818 255 SYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR-VPYDQYLALLQVSDVHVY---LTYPFVLSWSLLEAMACGCLVVGS 330 (396)
T ss_pred ccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC-CCHHHHHHHHHhCcEEEE---cCcccccchHHHHHHHCCCCEEEc
Confidence 11 2233344433 479999998 999999999999999999 677889999999999999999999
Q ss_pred ccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchHHHHHHH
Q 011979 395 SYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATEWEEH 459 (473)
Q Consensus 395 ~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~~ 459 (473)
+.++..|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++.+.+ |+|+...++.
T Consensus 331 ~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~----~~~~~~l~~~ar~~~~~~fs~~~~~~~~ 394 (396)
T cd03818 331 DTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD----PARRARLRRAARRTALRYDLLSVCLPRQ 394 (396)
T ss_pred CCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999986 799999999999985 88999999999998844 8887766554
No 15
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=3.1e-32 Score=274.10 Aligned_cols=361 Identities=23% Similarity=0.301 Sum_probs=259.6
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEEecCCCCCCccc------ccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHH
Q 011979 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAI------LEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (473)
Q Consensus 16 g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (473)
|...++...+..|+++ ||+|++++.......... ....+++++.++...... ......+.........
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-- 88 (394)
T cd03794 15 GGAFRTTELAEELVKR-GHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK---NGLLKRLLNYLSFALS-- 88 (394)
T ss_pred CcceeHHHHHHHHHhC-CceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc---cchHHHHHhhhHHHHH--
Confidence 5566777788889887 999999997644333222 234688888888432211 1111111111111111
Q ss_pred HHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhc-CC-CchHHHHHHHHHHHHhhcC
Q 011979 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL-GR-RSHFVSIYRWIEKYYGKMA 167 (473)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-~~-~~~~~~~~~~~e~~~~~~a 167 (473)
....+..+..+||+||++.++.. ....+...++..++|+++++|+.+........ .. .....+..+++++...+.+
T Consensus 89 -~~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (394)
T cd03794 89 -ALLALLKRRRRPDVIIATSPPLL-IALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRA 166 (394)
T ss_pred -HHHHHHhcccCCCEEEEcCChHH-HHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcC
Confidence 11122213578999999984433 33346666666789999999997532221111 11 2222256778889999999
Q ss_pred CEEEEcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhh
Q 011979 168 NGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIF 243 (473)
Q Consensus 168 d~vi~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (473)
|.++++|+.+++.+.. ++. ++.+++|+.+ ..+.+...... +..+
T Consensus 167 d~vi~~s~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~---------------------------- 214 (394)
T cd03794 167 DAIVVISPGMREYLVR-RGVPPEKISVIPNGVDLELFKPPPADES---LRKE---------------------------- 214 (394)
T ss_pred CEEEEECHHHHHHHHh-cCCCcCceEEcCCCCCHHHcCCccchhh---hhhc----------------------------
Confidence 9999999999998873 343 3788888844 33433221110 1111
Q ss_pred hcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEc
Q 011979 244 TSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG 323 (473)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG 323 (473)
.....+..++++|++...||++.+++|+..+.+ . ++++|+|+|
T Consensus 215 ---------~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~---------------------------~-~~~~l~i~G 257 (394)
T cd03794 215 ---------LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKD---------------------------R-PDIRFLIVG 257 (394)
T ss_pred ---------cCCCCcEEEEEecCcccccCHHHHHHHHHHHhh---------------------------c-CCeEEEEeC
Confidence 122234589999999999999999999999876 2 689999999
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 324 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 324 ~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
+|+..+.+++.+...++++|.++|. ++.+++..+|+.||++++|..... +.++|++++|||+||+|||+++.++..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 258 DGPEKEELKELAKALGLDNVTFLGR-VPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred CcccHHHHHHHHHHcCCCcEEEeCC-CChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 9998888888888887889999996 999999999999999999654432 5667999999999999999999999999
Q ss_pred ceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc-ccchHHHHHH
Q 011979 402 LVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATEWEE 458 (473)
Q Consensus 402 ~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~ 458 (473)
.+.++.+|++++ |+++++++|.+++++ ++.++++++++++... .++|+...++
T Consensus 337 ~~~~~~~g~~~~~~~~~~l~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~ 392 (394)
T cd03794 337 LVEEAGAGLVVPPGDPEALAAAILELLDD----PEERAEMGENGRRYVEEKFSREKLAER 392 (394)
T ss_pred hhccCCcceEeCCCCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhhcHHHHHHh
Confidence 999989999986 799999999999974 8999999999998874 7888776554
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.9e-32 Score=305.66 Aligned_cols=380 Identities=16% Similarity=0.117 Sum_probs=257.8
Q ss_pred HHHHHHHhhCC--CcEEEEecCCCCCC-------c--------------ccccCCCEEEEEeecCCCCC-CCCcchhHHH
Q 011979 23 YQALSLARQMS--LEVDVVAYGGSKPH-------A--------------AILEHPSIHIHTMTQWPTIP-RGLPKVLKPV 78 (473)
Q Consensus 23 ~~a~~L~~~~g--~eV~vi~~~~~~~~-------~--------------~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~~ 78 (473)
.+|..|++. | |+|+|+|.....+. + .....+|+.+++++ ..+. ..+++- ..+
T Consensus 203 ELAraLa~~-~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip--~GP~~~~l~Ke-~L~ 278 (1050)
T TIGR02468 203 ELARALGSM-PGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIP--FGPRDKYIPKE-ELW 278 (1050)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEec--cCCCCCCcCHH-HHH
Confidence 456777775 7 89999996643221 0 11234599999999 3433 223331 111
Q ss_pred HHHHHHHHHHHHHHHH----Hhh-----hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhh--hcC
Q 011979 79 LLLLKPLIQFFMLLWF----LCV-----KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSL--SLG 147 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~----~~~-----~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~ 147 (473)
.++-.+...+...+.. +.. ....||+||.|. +.+..++..++...++|+|+|.|.++-..... ..+
T Consensus 279 ~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHy---w~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g 355 (1050)
T TIGR02468 279 PYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHY---ADAGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQG 355 (1050)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECc---chHHHHHHHHHHhhCCCEEEECccchhhhhhhhcccc
Confidence 1121111111111100 000 112499999998 66777888999999999999999875222110 001
Q ss_pred C--Cc----hHH-HHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhC----------------------C---ceEEeeCC
Q 011979 148 R--RS----HFV-SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWG----------------------I---KATVLYDQ 195 (473)
Q Consensus 148 ~--~~----~~~-~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g----------------------~---~~~vi~n~ 195 (473)
. .. .+. ......|+.....||.|||+|...++.+...|+ . ++.|||+|
T Consensus 356 ~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpG 435 (1050)
T TIGR02468 356 RMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPG 435 (1050)
T ss_pred cccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCC
Confidence 0 00 010 111235888999999999999999988766653 1 57999999
Q ss_pred -CCCCcccCChhH-HHHHHH-hhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCC
Q 011979 196 -PPEFFHPTSLEE-KHELFC-RLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDED 272 (473)
Q Consensus 196 -~~~~f~~~~~~~-~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~ 272 (473)
+.+.|.|.+.+. +..+.. ..... .+.- .......| ...+++| +|+++||+.+.||
T Consensus 436 VD~~~F~P~~~~~~~~~~~~~~~~~~------~~~~-------~~~~l~r~--------~~~pdkp-vIL~VGRL~p~KG 493 (1050)
T TIGR02468 436 MEFSHIVPHDGDMDGETEGNEEHPAK------PDPP-------IWSEIMRF--------FTNPRKP-MILALARPDPKKN 493 (1050)
T ss_pred CcHHHccCCCccccchhccccccccc------ccch-------hhHHHHhh--------cccCCCc-EEEEEcCCccccC
Confidence 447787753211 100000 00000 0000 00000000 1234555 8999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-----------HHHHHHHHHcCC-
Q 011979 273 FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----------ESYEEKIRRLRL- 340 (473)
Q Consensus 273 ~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-----------~~l~~~~~~~~l- 340 (473)
++.||+|+..+.+. ...+++. +|+|.|++. ..++++++++++
T Consensus 494 i~~LIeAf~~L~~l-------------------------~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~ 547 (1050)
T TIGR02468 494 ITTLVKAFGECRPL-------------------------RELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY 547 (1050)
T ss_pred HHHHHHHHHHhHhh-------------------------ccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCC
Confidence 99999999998641 0135666 467876542 456788999999
Q ss_pred CcEEEecCCCCcccHHHHHhcC----cEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--C
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--S 414 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~a----di~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~ 414 (473)
++|.|.|+ +++++++.+|+.| |++|+ ||..|+||++++||||||+|||+|+.+|+.|++.++.+|++++ |
T Consensus 548 g~V~FlG~-v~~edvp~lYr~Ad~s~DVFV~---PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D 623 (1050)
T TIGR02468 548 GQVAYPKH-HKQSDVPDIYRLAAKTKGVFIN---PAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHD 623 (1050)
T ss_pred CeEEecCC-CCHHHHHHHHHHhhhcCCeeeC---CcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCC
Confidence 89999998 9999999999988 69999 7999999999999999999999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011979 415 SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 465 (473)
Q Consensus 415 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 465 (473)
+++|+++|.+++++ ++.+++|++++++.+..|+|+...+++++.+.+
T Consensus 624 ~eaLA~AL~~LL~D----pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 624 QQAIADALLKLVAD----KQLWAECRQNGLKNIHLFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred HHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999999999985 899999999999988889999888887755543
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2.1e-32 Score=281.52 Aligned_cols=346 Identities=19% Similarity=0.289 Sum_probs=244.1
Q ss_pred CCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 011979 16 GRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (473)
Q Consensus 16 g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (473)
|+.++ +..++..|.++ ++|+|++..... ....++++++++.+.. .......+... . ..+.
T Consensus 16 GG~~~~v~~l~~~l~~~--~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~-----~~~~ 76 (388)
T TIGR02149 16 GGAGVHVEELTRELARL--MDVDVRCFGDQR-----FDSEGLTVKGYRPWSE----LKEANKALGTF---S-----VDLA 76 (388)
T ss_pred ccHhHHHHHHHHHHHHh--cCeeEEcCCCch-----hcCCCeEEEEecChhh----ccchhhhhhhh---h-----HHHH
Confidence 44433 33445566553 788888865322 2355788887763211 11111111110 0 0011
Q ss_pred HhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcC
Q 011979 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 95 ~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (473)
...+..++|+||+|++. ...++.+++++.++|+|+++|+...... ...........+..++++...+.+|.++++|
T Consensus 77 ~~~~~~~~divh~~~~~---~~~~~~~~~~~~~~p~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 77 MANDPVDADVVHSHTWY---TFLAGHLAKKLYDKPLVVTAHSLEPLRP-WKEEQLGGGYKLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HhhCCCCCCeEeecchh---hhhHHHHHHHhcCCCEEEEeeccccccc-ccccccccchhHHHHHHHHHHhhCCEEEEcc
Confidence 22233579999999842 2334667777789999999998731100 0000000112345678889999999999999
Q ss_pred HHHHHHHHHHh-CC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccc
Q 011979 175 QAMQHELAQNW-GI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGI 249 (473)
Q Consensus 175 ~~~~~~l~~~~-g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
+.+++.+.+.+ +. ++.+++|+.+ +.|.+.. ...++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~---~~~~~~~~~--------------------------------- 196 (388)
T TIGR02149 153 GGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDD---GNVVLDRYG--------------------------------- 196 (388)
T ss_pred HHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCc---hHHHHHHhC---------------------------------
Confidence 99999998766 43 3789999954 5555432 233444443
Q ss_pred ccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-
Q 011979 250 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK- 328 (473)
Q Consensus 250 ~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~- 328 (473)
++++++ +++|+|++.+.||++.|++|++.+. ++++++++|+|+..
T Consensus 197 ---~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~------------------------------~~~~l~i~g~g~~~~ 242 (388)
T TIGR02149 197 ---IDRSRP-YILFVGRITRQKGVPHLLDAVHYIP------------------------------KDVQVVLCAGAPDTP 242 (388)
T ss_pred ---CCCCce-EEEEEcccccccCHHHHHHHHHHHh------------------------------hcCcEEEEeCCCCcH
Confidence 233344 8999999999999999999999873 35789999887654
Q ss_pred ---HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccce
Q 011979 329 ---ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 403 (473)
Q Consensus 329 ---~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i 403 (473)
+.+++.+++++. ++|.+.+++++.+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.++..|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~---ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i 319 (388)
T TIGR02149 243 EVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVC---PSIYEPLGIVNLEAMACGTPVVASATGGIPEVV 319 (388)
T ss_pred HHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEe---CCccCCCChHHHHHHHcCCCEEEeCCCCHHHHh
Confidence 345555666655 358887766999999999999999999 688899999999999999999999999999999
Q ss_pred ecCCceEEeC--CH------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 404 KVDKNGLLFS--SS------SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 404 ~~~~~G~~~~--~~------~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
.++.+|++++ |. ++++++|.+++++ ++.+++|++++++.. ++|+|+...+++.+
T Consensus 320 ~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 382 (388)
T TIGR02149 320 VDGETGFLVPPDNSDADGFQAELAKAINILLAD----PELAKKMGIAGRKRAEEEFSWGSIAKKTVE 382 (388)
T ss_pred hCCCceEEcCCCCCcccchHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999986 56 8999999999885 899999999998866 67999888877553
No 18
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=3.6e-32 Score=273.09 Aligned_cols=351 Identities=20% Similarity=0.267 Sum_probs=248.2
Q ss_pred CChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011979 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (473)
Q Consensus 17 ~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (473)
.+.++...+..|.++ ||+|++++......... ....++...... .....+...... . ...+...
T Consensus 16 ~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~-~-------~~~~~~~- 79 (374)
T cd03817 16 VATSIRRLAEELEKR-GHEVYVVAPSYPGAPEE-EEVVVVRPFRVP-----TFKYPDFRLPLP-I-------PRALIII- 79 (374)
T ss_pred eehHHHHHHHHHHHc-CCeEEEEeCCCCCCCcc-cccccccccccc-----cchhhhhhcccc-H-------HHHHHHH-
Confidence 356667778888887 99999999765432211 111111111111 000000000000 0 0011111
Q ss_pred hhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHH-HHHHHHhhcCCEEEEcCH
Q 011979 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYR-WIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 97 ~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ad~vi~vS~ 175 (473)
.+..+||+||++.+... ...+...++..++|++++.|+..................... ++++.+.+.+|.++++|+
T Consensus 80 ~~~~~~Div~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFSL--GLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchhh--hhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 23378999999987333 334566677788999999999853222111111222222333 678888889999999999
Q ss_pred HHHHHHHHHhCCc--eEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccc
Q 011979 176 AMQHELAQNWGIK--ATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (473)
Q Consensus 176 ~~~~~l~~~~g~~--~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
.+++.+.+. +.+ +.+++++. ...|.+...+ ..+..++
T Consensus 158 ~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~------------------------------------ 197 (374)
T cd03817 158 KIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGD---DERRKLG------------------------------------ 197 (374)
T ss_pred HHHHHHHhc-CCCCceEEcCCccchhccCccchh---HHHHhcC------------------------------------
Confidence 999888764 443 68888884 3455443221 1122211
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
.. +++..++|+|++.+.||++.+++++..+.++ .++++|+++|+|+..+.++
T Consensus 198 ~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~ 249 (374)
T cd03817 198 IP-EDEPVLLYVGRLAKEKNIDFLIRAFARLLKE---------------------------EPDVKLVIVGDGPEREELE 249 (374)
T ss_pred CC-CCCeEEEEEeeeecccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchHHHHH
Confidence 11 2344899999999999999999999998772 5789999999999989999
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEE
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL 411 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~ 411 (473)
+.++++++ ++|.++|. ++.+++..+|+.||++++ ++..+++|++++|||+||+|||+++.++..+++.++.+|++
T Consensus 250 ~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~l~---~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~ 325 (374)
T cd03817 250 ELARELGLADRVIFTGF-VPREELPDYYKAADLFVF---ASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFL 325 (374)
T ss_pred HHHHHcCCCCcEEEecc-CChHHHHHHHHHcCEEEe---cccccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEE
Confidence 99999988 79999998 999999999999999999 67778899999999999999999999999999999999999
Q ss_pred eCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 412 FSS-SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 412 ~~~-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
+++ .++++++|.+++++ ++.+++|++++++..+++.|...+++.++
T Consensus 326 ~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03817 326 FPPGDEALAEALLRLLQD----PELRRRLSKNAEESAEKFSFAKKVEKLYE 372 (374)
T ss_pred eCCCCHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 974 33999999999985 88889999999998866666666665544
No 19
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=1.1e-32 Score=280.61 Aligned_cols=275 Identities=21% Similarity=0.225 Sum_probs=216.6
Q ss_pred hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHH
Q 011979 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (473)
Q Consensus 98 ~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (473)
+..+||+||+|..+. +. .+..+++..++|+|+++|+....... ....... .+.+...++.+.+.+|.++++|+.+
T Consensus 79 ~~~~~dvvh~~~~~~--~~-~~~~~~~~~~~p~i~~~h~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~d~ii~~s~~~ 153 (367)
T cd05844 79 RRHRPDLVHAHFGFD--GV-YALPLARRLGVPLVVTFHGFDATTSL-ALLLRSR-WALYARRRRRLARRAALFIAVSQFI 153 (367)
T ss_pred HhhCCCEEEeccCch--HH-HHHHHHHHcCCCEEEEEeCccccccc-hhhcccc-hhHHHHHHHHHHHhcCEEEECCHHH
Confidence 347899999987432 22 34455667789999999975321110 0000011 3344566778888999999999999
Q ss_pred HHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccccc
Q 011979 178 QHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (473)
Q Consensus 178 ~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (473)
++.+.+. |.+ +.+++|+.+ +.|.+..
T Consensus 154 ~~~~~~~-~~~~~~i~vi~~g~d~~~~~~~~------------------------------------------------- 183 (367)
T cd05844 154 RDRLLAL-GFPPEKVHVHPIGVDTAKFTPAT------------------------------------------------- 183 (367)
T ss_pred HHHHHHc-CCCHHHeEEecCCCCHHhcCCCC-------------------------------------------------
Confidence 9998874 543 788888844 3333211
Q ss_pred CCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHH
Q 011979 254 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 254 ~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
....+..++|+|++.+.||++.+++|+..+.++ .++++|+|+|+|+..+++++
T Consensus 184 ~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~~~~~~ 236 (367)
T cd05844 184 PARRPPRILFVGRFVEKKGPLLLLEAFARLARR---------------------------VPEVRLVIIGDGPLLAALEA 236 (367)
T ss_pred CCCCCcEEEEEEeeccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCchHHHHHHH
Confidence 111233899999999999999999999999873 68999999999998888999
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC---CCCCCcHHHHHHHhcCCcEEEeccCccccceecCCce
Q 011979 334 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 409 (473)
Q Consensus 334 ~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s---~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G 409 (473)
.++++++ ++|.|+|. ++.+++..+|+.||++++|...+ ..|++|++++|||+||+|||+++.++..|++.++.+|
T Consensus 237 ~~~~~~~~~~v~~~g~-~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g 315 (367)
T cd05844 237 LARALGLGGRVTFLGA-QPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETG 315 (367)
T ss_pred HHHHcCCCCeEEECCC-CCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCee
Confidence 9999888 79999998 99999999999999999963322 2589999999999999999999999999999999999
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011979 410 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 459 (473)
Q Consensus 410 ~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 459 (473)
++++ |+++++++|.+++++ ++.+.+|++++++.. +.++|+...++.
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~l 364 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLAD----PDLRARMGAAGRRRVEERFDLRRQTAKL 364 (367)
T ss_pred EEECCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 9996 799999999999985 888999999998876 678887766553
No 20
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2.9e-32 Score=275.71 Aligned_cols=330 Identities=19% Similarity=0.188 Sum_probs=238.1
Q ss_pred CCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011979 15 LGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (473)
Q Consensus 15 ~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
.||.+++.. .+..|.++ ||+|.+++..+.. .......+++++.++. .... ....+..... +.
T Consensus 9 ~gG~e~~~~~l~~~L~~~-g~~v~v~~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~--------l~ 71 (355)
T cd03819 9 SGGVERGTLELARALVER-GHRSLVASAGGRL--VAELEAEGSRHIKLPF--ISKN----PLRILLNVAR--------LR 71 (355)
T ss_pred cCcHHHHHHHHHHHHHHc-CCEEEEEcCCCch--HHHHHhcCCeEEEccc--cccc----hhhhHHHHHH--------HH
Confidence 466666654 56777776 9999999865322 2334455787777662 1111 1111111111 11
Q ss_pred HHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEc
Q 011979 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (473)
Q Consensus 94 ~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (473)
..+ +..+||+||++++.. .. .+.++++..++|+++++|+..... . ..+...+.+|.++++
T Consensus 72 ~~~-~~~~~dii~~~~~~~--~~-~~~~~~~~~~~~~i~~~h~~~~~~--------~--------~~~~~~~~~~~vi~~ 131 (355)
T cd03819 72 RLI-REEKVDIVHARSRAP--AW-SAYLAARRTRPPFVTTVHGFYSVN--------F--------RYNAIMARGDRVIAV 131 (355)
T ss_pred HHH-HHcCCCEEEECCCch--hH-HHHHHHHhcCCCEEEEeCCchhhH--------H--------HHHHHHHhcCEEEEe
Confidence 122 237899999998532 22 345556667899999999983210 0 223344679999999
Q ss_pred CHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCCh--hHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccc
Q 011979 174 TQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLA 247 (473)
Q Consensus 174 S~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
|+.+++.+.+.++.+ +.+++|+.+ +.|.+... .....++.+++
T Consensus 132 s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 180 (355)
T cd03819 132 SNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWP------------------------------- 180 (355)
T ss_pred CHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcC-------------------------------
Confidence 999999998777764 789999844 55544321 11111233222
Q ss_pred ccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC
Q 011979 248 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (473)
Q Consensus 248 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 327 (473)
.++ ...+++|+|++.+.||++.+++++..+.+ ..++++++|+|.|+.
T Consensus 181 -----~~~-~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~---------------------------~~~~~~l~ivG~~~~ 227 (355)
T cd03819 181 -----LPK-GKPVILLPGRLTRWKGQEVFIEALARLKK---------------------------DDPDVHLLIVGDAQG 227 (355)
T ss_pred -----CCC-CceEEEEeeccccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEECCcc
Confidence 122 23489999999999999999999999877 257899999999875
Q ss_pred hHH----HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 328 KES----YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 328 ~~~----l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
.+. +.+.++++++ ++|.|+|+ .+++..+|+.||++++ +| ..|++|++++||||||+|||+++.++..|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~l~~ad~~i~---ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e 301 (355)
T cd03819 228 RRFYYAELLELIKRLGLQDRVTFVGH---CSDMPAAYALADIVVS---ASTEPEAFGRTAVEAQAMGRPVIASDHGGARE 301 (355)
T ss_pred cchHHHHHHHHHHHcCCcceEEEcCC---cccHHHHHHhCCEEEe---cCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH
Confidence 433 3456778887 78999998 8899999999999999 56 78999999999999999999999999999
Q ss_pred ceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHH
Q 011979 402 LVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWAT 454 (473)
Q Consensus 402 ~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 454 (473)
++.++.+|++++ |+++++++|..++.. +++.+.++++++++.. +.|+|++
T Consensus 302 ~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 302 TVRPGETGLLVPPGDAEALAQALDQILSL---LPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHhCCCceEEeCCCCHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999985 799999999776664 6899999999999988 6677753
No 21
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=8.1e-32 Score=286.15 Aligned_cols=369 Identities=15% Similarity=0.119 Sum_probs=245.8
Q ss_pred CCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcc------------------cccCCCEEEEEeecCCC-CCCCCcc-
Q 011979 15 LGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAA------------------ILEHPSIHIHTMTQWPT-IPRGLPK- 73 (473)
Q Consensus 15 ~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~------------------~~~~~~i~i~~~~~~~~-~~~~~~~- 73 (473)
.|+.+.+. .++..|+++ ||+|+|+++........ ....+|++++.+..... ....+..
T Consensus 16 ~GGl~~~v~~L~~~L~~~-G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~~~~~~~~~y~~ 94 (466)
T PRK00654 16 TGGLGDVVGALPKALAAL-GHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAPHLFDRPSGYGY 94 (466)
T ss_pred cCcHHHHHHHHHHHHHHC-CCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCHHHcCCCCCCCC
Confidence 45544443 456777776 99999999764332111 01236888888873111 1111110
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhh-----CCCeEEEEecCchhhhh-h-
Q 011979 74 ---VLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-----RRSAFIVDWHNFGYTLL-S- 143 (473)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~-----~~~~~i~~~h~~~~~~~-~- 143 (473)
..++. .+.+. ...++..+ ..+||+||+|. +.+..++.+++.. .++|+|+++|+..+.-. .
T Consensus 95 ~d~~~r~~-~f~~~---~~~~~~~~---~~~pDiiH~h~---w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~ 164 (466)
T PRK00654 95 PDNGERFA-FFSWA---AAEFAEGL---DPRPDIVHAHD---WHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPA 164 (466)
T ss_pred cChHHHHH-HHHHH---HHHHHHhc---CCCCceEEECC---cHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCH
Confidence 11111 01111 11111111 24899999999 4455455555533 37999999999853110 0
Q ss_pred --h-hcCCC-ch--HHH--HH--HHHHHHHhhcCCEEEEcCHHHHHHHHHH-h-----------CCceEEeeCC-CCCCc
Q 011979 144 --L-SLGRR-SH--FVS--IY--RWIEKYYGKMANGCLCVTQAMQHELAQN-W-----------GIKATVLYDQ-PPEFF 200 (473)
Q Consensus 144 --~-~~~~~-~~--~~~--~~--~~~e~~~~~~ad~vi~vS~~~~~~l~~~-~-----------g~~~~vi~n~-~~~~f 200 (473)
. ..+-. .. ... .+ ..+.+...+.||.++++|+.+++++.+. + ..++.+|+|| +.+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~ 244 (466)
T PRK00654 165 EILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIW 244 (466)
T ss_pred HHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCcccc
Confidence 0 00000 00 000 00 1234455678999999999999888642 2 2248899999 44667
Q ss_pred ccCCh----------------hHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC-CCCeEEEE
Q 011979 201 HPTSL----------------EEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP-NRPALVVS 263 (473)
Q Consensus 201 ~~~~~----------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 263 (473)
.|... +.+..++.+++ +++ +.| ++++
T Consensus 245 ~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g------------------------------------l~~~~~~-~i~~ 287 (466)
T PRK00654 245 NPETDPLLAANYSADDLEGKAENKRALQERFG------------------------------------LPDDDAP-LFAM 287 (466)
T ss_pred CCccCcccccccChhhhhchHHHHHHHHHHhC------------------------------------CCCCCCc-EEEE
Confidence 66421 12334455544 222 344 8999
Q ss_pred EeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCC
Q 011979 264 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLK 341 (473)
Q Consensus 264 ~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~ 341 (473)
+||+.++||++.+++|+..+.+ .+++|+|+|+|+. .+.+++++++++ .
T Consensus 288 vGRl~~~KG~~~li~a~~~l~~-----------------------------~~~~lvivG~g~~~~~~~l~~l~~~~~-~ 337 (466)
T PRK00654 288 VSRLTEQKGLDLVLEALPELLE-----------------------------QGGQLVLLGTGDPELEEAFRALAARYP-G 337 (466)
T ss_pred eeccccccChHHHHHHHHHHHh-----------------------------cCCEEEEEecCcHHHHHHHHHHHHHCC-C
Confidence 9999999999999999999865 3789999999863 467888888887 4
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecC------CceEEeC--
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD------KNGLLFS-- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~------~~G~~~~-- 413 (473)
++.+.++ .+.+.++.+|+.||++|+ ||..|+||++++|||+||+|+|+++.+|+.|+|.++ .+|++++
T Consensus 338 ~v~~~~g-~~~~~~~~~~~~aDv~v~---PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~ 413 (466)
T PRK00654 338 KVGVQIG-YDEALAHRIYAGADMFLM---PSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF 413 (466)
T ss_pred cEEEEEe-CCHHHHHHHHhhCCEEEe---CCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC
Confidence 5666545 355667899999999999 788999999999999999999999999999999888 8999996
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011979 414 SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 414 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
|+++++++|.++++... +++.+++|++++.+ +.|+|+...+++ .++++++.+
T Consensus 414 d~~~la~~i~~~l~~~~-~~~~~~~~~~~~~~--~~fsw~~~a~~~-~~lY~~~~~ 465 (466)
T PRK00654 414 NAEDLLRALRRALELYR-QPPLWRALQRQAMA--QDFSWDKSAEEY-LELYRRLLG 465 (466)
T ss_pred CHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhc--cCCChHHHHHHH-HHHHHHHhh
Confidence 79999999999886432 46668889888864 479999988885 456666543
No 22
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=8.1e-32 Score=282.45 Aligned_cols=353 Identities=14% Similarity=0.133 Sum_probs=241.9
Q ss_pred CCChhHHHHHHHHHhhC--CCcEEEEecCCCCCC----------cccccCCCEEEEEee-c-CCCCCCCCcchhHHHHHH
Q 011979 16 GRSPRMQYQALSLARQM--SLEVDVVAYGGSKPH----------AAILEHPSIHIHTMT-Q-WPTIPRGLPKVLKPVLLL 81 (473)
Q Consensus 16 g~s~r~~~~a~~L~~~~--g~eV~vi~~~~~~~~----------~~~~~~~~i~i~~~~-~-~~~~~~~~~~~~~~~~~~ 81 (473)
||++|+...|..-..+. +++|+|+|......+ -++...+++.++++. . ...+....+++.......
T Consensus 14 gg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (419)
T cd03806 14 GGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQAL 93 (419)
T ss_pred CCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHHH
Confidence 38999998875443333 789999996644322 122335567765552 1 112233334433333333
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCch---hhhhhhhcC-----------
Q 011979 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG---YTLLSLSLG----------- 147 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~---~~~~~~~~~----------- 147 (473)
..++.. +..+.+ .+||+++.+.++..... +. ..+.+.|+|..+|-.. ........+
T Consensus 94 ~~~~~~-----~~~~~~-~~pDv~i~~~g~~~~~~-~~---~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~ 163 (419)
T cd03806 94 GSMILG-----LEALLK-LVPDIFIDTMGYPFTYP-LV---RLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSATIA 163 (419)
T ss_pred HHHHHH-----HHHHHh-cCCCEEEEcCCcccHHH-HH---HHhcCCeEEEEecCCcchHHHHHHHhhccccccCccchh
Confidence 333221 111212 47999988874433222 22 2234789999999221 111111111
Q ss_pred CCc---hHH----HHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--ceEEeeCCCC-CCcccCChhHHHHHHHhhhh
Q 011979 148 RRS---HFV----SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNK 217 (473)
Q Consensus 148 ~~~---~~~----~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~--~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~ 217 (473)
.++ ..+ +.+.+++++..+.||.++++|+.+++.+.+.++. ++.++|++.+ +.|.+...
T Consensus 164 ~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~------------ 231 (419)
T cd03806 164 RSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL------------ 231 (419)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc------------
Confidence 111 112 2334678888999999999999999999887766 5889998743 33322210
Q ss_pred hccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCc
Q 011979 218 ILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDST 297 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~ 297 (473)
....++..++|+|++.+.||++.+++|+..+.+..
T Consensus 232 -----------------------------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~---------- 266 (419)
T cd03806 232 -----------------------------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRL---------- 266 (419)
T ss_pred -----------------------------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhC----------
Confidence 00112238999999999999999999999987630
Q ss_pred hhhHHHhhhccCccccCCCEEEEEEcCCCC------hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEecc
Q 011979 298 NEEVFLKEISDGKQYLYPRLLFIITGKGPD------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHT 370 (473)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~------~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~ 370 (473)
.+. ..++++|+|+|+|+. .++++++++++++ ++|.|+|. +|.+++..+|+.||++++
T Consensus 267 ---------~~~---~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~-v~~~~l~~~l~~adv~v~--- 330 (419)
T cd03806 267 ---------PEE---IKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVN-APFEELLEELSTASIGLH--- 330 (419)
T ss_pred ---------ccc---ccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecC-CCHHHHHHHHHhCeEEEE---
Confidence 000 014699999998742 3667888999999 79999998 999999999999999999
Q ss_pred CCCCCCCcHHHHHHHhcCCcEEEeccCc-ccccee---cCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011979 371 SSSGLDLPMKVVDMFGCGLPVCAVSYSC-IEELVK---VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 446 (473)
Q Consensus 371 ~s~~e~~p~kv~Eama~G~PvI~~~~~~-~~e~i~---~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 446 (473)
++..|+||++++||||||+|||+++.+| ..+++. ++.+|++++|+++++++|.+++++ +++.++.+++++++.
T Consensus 331 ~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~---~~~~~~~~~~~~~~~ 407 (419)
T cd03806 331 TMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSL---SEEERLRIRRAARSS 407 (419)
T ss_pred CCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 6778999999999999999999999866 457777 799999999999999999999996 456677777777776
Q ss_pred ccccchHH
Q 011979 447 GLSARWAT 454 (473)
Q Consensus 447 ~~~~~w~~ 454 (473)
.++|+|+.
T Consensus 408 ~~~fs~~~ 415 (419)
T cd03806 408 VKRFSDEE 415 (419)
T ss_pred HHhhCHHH
Confidence 67888875
No 23
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-31 Score=271.08 Aligned_cols=342 Identities=14% Similarity=0.140 Sum_probs=241.2
Q ss_pred CCCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 011979 14 DLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (473)
Q Consensus 14 ~~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
..||.++.. ..+..|.++ ||+|+|+|....... ......|+++++++... ..... .....+.. +
T Consensus 13 ~~gG~~~~~~~la~~L~~~-g~~v~v~~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~---~~~~~~~~--------~ 77 (363)
T cd04955 13 KYGGFETFVEELAPRLVAR-GHEVTVYCRSPYPKQ-KETEYNGVRLIHIPAPE--IGGLG---TIIYDILA--------I 77 (363)
T ss_pred ccCcHHHHHHHHHHHHHhc-CCCEEEEEccCCCCC-cccccCCceEEEcCCCC--ccchh---hhHHHHHH--------H
Confidence 346655544 345677776 999999997644322 13345689988887211 11111 11111111 1
Q ss_pred HHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEE
Q 011979 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (473)
Q Consensus 93 ~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (473)
+....+..++|++|...|.. .....+ .+..+.|++++.|+..+.. ........+++++.++...+.+|.+++
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~---~~~~~~-~~~~~~~~v~~~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~ad~ii~ 149 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI---APFLPL-LRLKGKKVVVNMDGLEWKR----AKWGRPAKRYLKFGEKLAVKFADRLIA 149 (363)
T ss_pred HHHHhccCCeEEEEecCccH---HHHHHH-HHhcCCCEEEEccCcceee----cccccchhHHHHHHHHHHHhhccEEEe
Confidence 11121235677777666433 212223 3344789999999874311 111223345667788888899999999
Q ss_pred cCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 173 VTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 173 vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+|+.+++.+.+.+|.+..+++|+.+ ..+.+ +.+.+..++
T Consensus 150 ~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~-----~~~~~~~~~----------------------------------- 189 (363)
T cd04955 150 DSPGIKEYLKEKYGRDSTYIPYGADHVVSSE-----EDEILKKYG----------------------------------- 189 (363)
T ss_pred CCHHHHHHHHHhcCCCCeeeCCCcChhhcch-----hhhhHHhcC-----------------------------------
Confidence 9999999998888888889999854 32322 111111111
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
..+ ++ .++|+|++.+.||++.+++|++.+. ++++|+++|+|+....+
T Consensus 190 -~~~-~~-~i~~~G~~~~~Kg~~~li~a~~~l~------------------------------~~~~l~ivG~~~~~~~~ 236 (363)
T cd04955 190 -LEP-GR-YYLLVGRIVPENNIDDLIEAFSKSN------------------------------SGKKLVIVGNADHNTPY 236 (363)
T ss_pred -CCC-Cc-EEEEEecccccCCHHHHHHHHHhhc------------------------------cCceEEEEcCCCCcchH
Confidence 112 23 6789999999999999999998862 36899999999776667
Q ss_pred HHHHH-HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC-CCCcHHHHHHHhcCCcEEEeccCccccceecCCc
Q 011979 332 EEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 408 (473)
Q Consensus 332 ~~~~~-~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~-e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~ 408 (473)
.+.++ .++. ++|.|+|. ++.+++..++..||++++ ||.. |++|++++|||+||+|||+|+.++..|++.+ +
T Consensus 237 ~~~~~~~~~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~---ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~ 310 (363)
T cd04955 237 GKLLKEKAAADPRIIFVGP-IYDQELLELLRYAALFYL---HGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--K 310 (363)
T ss_pred HHHHHHHhCCCCcEEEccc-cChHHHHHHHHhCCEEEe---CCccCCCCChHHHHHHHcCCCEEEecCCccceeecC--C
Confidence 76666 5666 79999998 999999999999999999 5655 9999999999999999999999999999865 7
Q ss_pred eEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 409 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 409 G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
|+++++.+.++++|.+++++ ++.+.++++++++.. +.++|+...+++.+
T Consensus 311 g~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 311 AIYFKVGDDLASLLEELEAD----PEEVSAMAKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred eeEecCchHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88887555599999999995 788999999999877 45898887766543
No 24
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.4e-31 Score=269.06 Aligned_cols=343 Identities=19% Similarity=0.246 Sum_probs=242.7
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011979 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFL 95 (473)
Q Consensus 16 g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (473)
|...++...+..|+++ ||+|++++........... ..+.+..... ...............+.+.
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------- 78 (364)
T cd03814 15 GVVRTLQRLVEHLRAR-GHEVLVIAPGPFRESEGPA--RVVPVPSVPL--PGYPEIRLALPPRRRVRRL----------- 78 (364)
T ss_pred ceehHHHHHHHHHHHC-CCEEEEEeCCchhhccCCC--Cceeeccccc--CcccceEecccchhhHHHH-----------
Confidence 3355666777888886 9999999976543221111 2222222220 0011111111111111111
Q ss_pred hhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCH
Q 011979 96 CVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 96 ~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (473)
+ +..+||+||++.+.... ..+..+++..++|+++++|+.+..... .............+.+.+.+.+|.++++|+
T Consensus 79 ~-~~~~pdii~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 153 (364)
T cd03814 79 L-DAFAPDVVHIATPGPLG--LAALRAARRLGIPVVTSYHTDFPEYLR--YYGLGPLSWLAWAYLRWFHNRADRVLVPSP 153 (364)
T ss_pred H-HhcCCCEEEEeccchhh--HHHHHHHHHcCCCEEEEEecChHHHhh--hcccchHhHhhHHHHHHHHHhCCEEEeCCH
Confidence 1 23789999999754332 235566667889999999987432221 112223334445667778889999999999
Q ss_pred HHHHHHHHHhCCceEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 176 AMQHELAQNWGIKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 176 ~~~~~l~~~~g~~~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.+++.+.+....++.+++++. .+.|.+.... ...+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-------------------------------------- 193 (364)
T cd03814 154 SLADELRARGFRRVRLWPRGVDTELFHPRRRD--EALRARLG-------------------------------------- 193 (364)
T ss_pred HHHHHHhccCCCceeecCCCccccccCccccc--HHHHHHhC--------------------------------------
Confidence 999866654334478888884 3555443211 11111111
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
...+..++|+|++.+.||++.++++++.+.+ . ++++|+++|.|++.+.++
T Consensus 194 ~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~---------------------------~-~~~~l~i~G~~~~~~~~~-- 243 (364)
T cd03814 194 PPDRPVLLYVGRLAPEKNLEALLDADLPLRR---------------------------R-PPVRLVIVGDGPARARLE-- 243 (364)
T ss_pred CCCCeEEEEEeccccccCHHHHHHHHHHhhh---------------------------c-CCceEEEEeCCchHHHHh--
Confidence 1233489999999999999999999999876 3 789999999998766554
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 413 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~ 413 (473)
+. ++|.+.|+ ++.+++..+|++||++++ ++..|++|++++||||||+|||+++.++..+++.++.+|++++
T Consensus 244 ----~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~---~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~ 315 (364)
T cd03814 244 ----ARYPNVHFLGF-LDGEELAAAYASADVFVF---PSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVE 315 (364)
T ss_pred ----ccCCcEEEEec-cCHHHHHHHHHhCCEEEE---CcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcC
Confidence 23 69999998 999999999999999999 6777899999999999999999999999999999999999986
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 414 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 414 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
|.++++++|.+++++ ++.++++++++++..++++|++..++..+
T Consensus 316 ~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (364)
T cd03814 316 PGDAEAFAAALAALLAD----PELRRRMAARARAEAERRSWEAFLDNLLE 361 (364)
T ss_pred CCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 588899999999985 89999999999998888998888777554
No 25
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.1e-31 Score=283.28 Aligned_cols=288 Identities=17% Similarity=0.147 Sum_probs=213.3
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCC---CeEEEEecCchhhhh-hh----hcCCC-chHH-HH-----HHHHHHHHh
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR---SAFIVDWHNFGYTLL-SL----SLGRR-SHFV-SI-----YRWIEKYYG 164 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~---~~~i~~~h~~~~~~~-~~----~~~~~-~~~~-~~-----~~~~e~~~~ 164 (473)
.+||+||+|+ +.+..++.+++...+ +|+|+++|++.+.-. .. ..+.. ..+. .. ...+.+...
T Consensus 127 ~~~DiiH~hd---w~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 203 (473)
T TIGR02095 127 WQPDVVHAHD---WHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGI 203 (473)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHH
Confidence 5899999999 455555555655443 899999999853110 00 00000 0000 00 012345667
Q ss_pred hcCCEEEEcCHHHHHHHHHH-h-----------CCceEEeeCCC-CCCcccCCh----------------hHHHHHHHhh
Q 011979 165 KMANGCLCVTQAMQHELAQN-W-----------GIKATVLYDQP-PEFFHPTSL----------------EEKHELFCRL 215 (473)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~-~-----------g~~~~vi~n~~-~~~f~~~~~----------------~~~~~l~~~l 215 (473)
+.||.++++|+.+++.+.+. + ..++.+|+||. .+.|.|... +.+..+++++
T Consensus 204 ~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~ 283 (473)
T TIGR02095 204 VYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEEL 283 (473)
T ss_pred HhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHc
Confidence 89999999999999888642 1 23588999994 466765421 1233444444
Q ss_pred hhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCC
Q 011979 216 NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDD 295 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~ 295 (473)
+.. ..++.+ +++|+||+.+.||++.+++|+..+.+
T Consensus 284 gl~----------------------------------~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~---------- 318 (473)
T TIGR02095 284 GLP----------------------------------VDDDVP-LFGVISRLTQQKGVDLLLAALPELLE---------- 318 (473)
T ss_pred CCC----------------------------------ccCCCC-EEEEEecCccccChHHHHHHHHHHHH----------
Confidence 411 112344 89999999999999999999999876
Q ss_pred CchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCC
Q 011979 296 STNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS 373 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~ 373 (473)
.+++|+|+|+|+ ..+.+++++++++ .++.+.+. .+.+++..+|+.||++++ ||.
T Consensus 319 -------------------~~~~lvi~G~g~~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~~~~~~~~aDv~l~---pS~ 374 (473)
T TIGR02095 319 -------------------LGGQLVVLGTGDPELEEALRELAERYP-GNVRVIIG-YDEALAHLIYAGADFILM---PSR 374 (473)
T ss_pred -------------------cCcEEEEECCCCHHHHHHHHHHHHHCC-CcEEEEEc-CCHHHHHHHHHhCCEEEe---CCC
Confidence 359999999995 3466777777665 57888887 788889999999999999 788
Q ss_pred CCCCcHHHHHHHhcCCcEEEeccCccccceecC------CceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 374 GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 374 ~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~------~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
.|+||++++|||+||+|+|+++.+|+.|+|.++ .+|++++ |+++++++|.++++...++++.+++|++++.+
T Consensus 375 ~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 454 (473)
T TIGR02095 375 FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMS 454 (473)
T ss_pred cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988 8999996 79999999999887433358889999999864
Q ss_pred hccccchHHHHHHHHH
Q 011979 446 MGLSARWATEWEEHAK 461 (473)
Q Consensus 446 ~~~~~~w~~~~~~~~~ 461 (473)
+.|+|+...+++.+
T Consensus 455 --~~fsw~~~a~~~~~ 468 (473)
T TIGR02095 455 --QDFSWDKSAKQYVE 468 (473)
T ss_pred --cCCCcHHHHHHHHH
Confidence 47999988877543
No 26
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2.7e-31 Score=275.00 Aligned_cols=344 Identities=14% Similarity=0.138 Sum_probs=240.5
Q ss_pred EEEEEecCCC----CChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCC--cch--hHHH
Q 011979 7 ACVVVLGDLG----RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGL--PKV--LKPV 78 (473)
Q Consensus 7 ~~i~~~~~~g----~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~--~~~~ 78 (473)
+..+++..+. ..++++.....+++..-++|+|+|....+........+|+.+++++ ....+.. .++ ...+
T Consensus 5 ~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (380)
T PRK15484 5 IIFTVTPIFSIPPRGAAAVETWIYQVAKRTSIPNRIACIKNPGYPEYTKVNDNCDIHYIG--FSRIYKRLFQKWTRLDPL 82 (380)
T ss_pred EEEEeccCCCCCCccccHHHHHHHHhhhhccCCeeEEEecCCCCCchhhccCCCceEEEE--eccccchhhhhhhccCch
Confidence 4444554442 3566777667777554679999998766522232456678888885 1111100 110 0111
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHH
Q 011979 79 LLLLKPLIQFFMLLWFLCV--KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIY 156 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 156 (473)
.+...+ +..+. +..++|+||+|+.+ .. ...+.....+.|+++++|+.+. +
T Consensus 83 ~~~~~~--------~~~~~~~~~~~~~vi~v~~~~---~~-~~~~~~~~~~~~~v~~~h~~~~--------~-------- 134 (380)
T PRK15484 83 PYSQRI--------LNIAHKFTITKDSVIVIHNSM---KL-YRQIRERAPQAKLVMHMHNAFE--------P-------- 134 (380)
T ss_pred hHHHHH--------HHHHHhcCCCCCcEEEEeCcH---Hh-HHHHHhhCCCCCEEEEEecccC--------h--------
Confidence 111111 11111 23569999999943 22 2444555677899999998721 0
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~-~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
...+.++.++++|+.+++.+.+.++. ++.++|||.+ +.|.+.. ...++.+++
T Consensus 135 -----~~~~~~~~ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~---~~~~~~~~~------------------ 188 (380)
T PRK15484 135 -----ELLDKNAKIIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNP---QPNLRQQLN------------------ 188 (380)
T ss_pred -----hHhccCCEEEEcCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcc---hHHHHHHhC------------------
Confidence 11135799999999999998875543 4889999944 5565432 222333333
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.+++. .+++|+|++.+.||++.|++|+..+.++ .
T Consensus 189 ------------------~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~---------------------------~ 222 (380)
T PRK15484 189 ------------------ISPDE-TVLLYAGRISPDKGILLLMQAFEKLATA---------------------------H 222 (380)
T ss_pred ------------------CCCCC-eEEEEeccCccccCHHHHHHHHHHHHHh---------------------------C
Confidence 22223 3899999999999999999999998763 6
Q ss_pred CCEEEEEEcCCCCh---------HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHH
Q 011979 315 PRLLFIITGKGPDK---------ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDM 384 (473)
Q Consensus 315 ~~~~l~ivG~g~~~---------~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Ea 384 (473)
|+++|+|+|+|+.. +.+++++++++ .+|.|+|+ ++.+++..+|+.||++|+ || ..|+||++++||
T Consensus 223 p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~-~~v~~~G~-~~~~~l~~~~~~aDv~v~---pS~~~E~f~~~~lEA 297 (380)
T PRK15484 223 SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG-DRCIMLGG-QPPEKMHNYYPLADLVVV---PSQVEEAFCMVAVEA 297 (380)
T ss_pred CCeEEEEEeCCccccccchhHHHHHHHHHHHhcC-CcEEEeCC-CCHHHHHHHHHhCCEEEe---CCCCccccccHHHHH
Confidence 89999999988632 23444555555 58999998 999999999999999999 56 469999999999
Q ss_pred HhcCCcEEEeccCccccceecCCceEE-eC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 385 FGCGLPVCAVSYSCIEELVKVDKNGLL-FS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 385 ma~G~PvI~~~~~~~~e~i~~~~~G~~-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
||||+|||+++.+|+.|++.++.+|++ ++ |+++++++|.+++++ ++ +.+|++++++.. ++|+|+...+++.
T Consensus 298 ma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d----~~-~~~~~~~ar~~~~~~fsw~~~a~~~~ 372 (380)
T PRK15484 298 MAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLAD----PE-LTQIAEQAKDFVFSKYSWEGVTQRFE 372 (380)
T ss_pred HHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC----HH-HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999984 43 799999999999985 65 467999998765 6899887776644
Q ss_pred HH
Q 011979 461 KP 462 (473)
Q Consensus 461 ~~ 462 (473)
+.
T Consensus 373 ~~ 374 (380)
T PRK15484 373 EQ 374 (380)
T ss_pred HH
Confidence 43
No 27
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=2e-31 Score=269.89 Aligned_cols=329 Identities=17% Similarity=0.139 Sum_probs=229.3
Q ss_pred CCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCC-CcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 011979 14 DLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKP-HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (473)
Q Consensus 14 ~~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
+.||..+... .+..|.+. ||+|++++...... ........++.+++++ .. .......+..+.+.
T Consensus 10 ~~GG~~~~~~~l~~~L~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~------- 75 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRS-KIQFDFLVTSKEEGDYDDEIEKLGGKIYYIP--AR----KKNPLKYFKKLYKL------- 75 (358)
T ss_pred CCccHHHHHHHHHHhcCcc-ceEEEEEEeCCCCcchHHHHHHcCCeEEEec--CC----CccHHHHHHHHHHH-------
Confidence 4555555543 34555554 99999999765431 2223345577777655 11 11112222222221
Q ss_pred HHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCe-EEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEE
Q 011979 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA-FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGC 170 (473)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 170 (473)
+ +..+||+||++++. .......+.+. .+.| ++++.|+..+.. .........+++++.+.+.++.+
T Consensus 76 ----~-~~~~~Dvv~~~~~~--~~~~~~~~~~~-~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 141 (358)
T cd03812 76 ----I-KKNKYDIVHVHGSS--ASGFILLAAKK-AGVKVRIAHSHNTSDSH------DKKKKILKYKVLRKLINRLATDY 141 (358)
T ss_pred ----H-hcCCCCEEEEeCcc--hhHHHHHHHhh-CCCCeEEEEeccccccc------cccchhhHHHHHHHHHHhcCCEE
Confidence 1 23789999999965 22222333333 4444 567888874211 11111111146677788899999
Q ss_pred EEcCHHHHHHHHHHh-CCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccc
Q 011979 171 LCVTQAMQHELAQNW-GIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAG 248 (473)
Q Consensus 171 i~vS~~~~~~l~~~~-g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
+++|+..++.+.+.. +.++.+++|+.+ +.|.+... .+.. +...+
T Consensus 142 i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-~~~~-~~~~~-------------------------------- 187 (358)
T cd03812 142 LACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEE-IRKK-RRELG-------------------------------- 187 (358)
T ss_pred EEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCch-hhhH-HHHcC--------------------------------
Confidence 999999998887642 234899999954 44433321 1111 11111
Q ss_pred cccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh
Q 011979 249 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 328 (473)
Q Consensus 249 ~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~ 328 (473)
..+ .+..++|+|++.+.||++.+++|+..+.++ .++++++|+|+|+..
T Consensus 188 ----~~~-~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~ 235 (358)
T cd03812 188 ----ILE-DKFVIGHVGRFSEQKNHEFLIEIFAELLKK---------------------------NPNAKLLLVGDGELE 235 (358)
T ss_pred ----CCC-CCEEEEEEeccccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchH
Confidence 122 334899999999999999999999999873 689999999999999
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCC
Q 011979 329 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 407 (473)
Q Consensus 329 ~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~ 407 (473)
+.+++.++++++ ++|.++|+ .+++.++|+.||++|+ ||..|++|++++||||+|+|||+++.++..+++.++.
T Consensus 236 ~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~ 309 (358)
T cd03812 236 EEIKKKVKELGLEDKVIFLGV---RNDVPELLQAMDVFLF---PSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLV 309 (358)
T ss_pred HHHHHHHHhcCCCCcEEEecc---cCCHHHHHHhcCEEEe---cccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCc
Confidence 999999999998 79999997 7899999999999999 6778999999999999999999999999999998844
Q ss_pred ceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011979 408 NGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 446 (473)
Q Consensus 408 ~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 446 (473)
.++..+ ++++++++|.+++++ ++.+++++.++...
T Consensus 310 ~~~~~~~~~~~~a~~i~~l~~~----~~~~~~~~~~~~~~ 345 (358)
T cd03812 310 KFLSLDESPEIWAEEILKLKSE----DRRERSSESIKKKG 345 (358)
T ss_pred cEEeCCCCHHHHHHHHHHHHhC----cchhhhhhhhhhcc
Confidence 444444 479999999999996 77788777777663
No 28
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=5e-31 Score=262.42 Aligned_cols=345 Identities=20% Similarity=0.220 Sum_probs=246.6
Q ss_pred EEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHH
Q 011979 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLI 86 (473)
Q Consensus 7 ~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (473)
++++.....|....+...+..|.++ ||+|++++....... .....+++++.++.... .... ...+....++.
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~- 73 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE--ELEALGVKVIPIPLDRR---GINP-FKDLKALLRLY- 73 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc--ccccCCceEEecccccc---ccCh-HhHHHHHHHHH-
Confidence 3444444344455566677788776 999999997654432 34566888888872211 1111 11111111111
Q ss_pred HHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhh
Q 011979 87 QFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (473)
Q Consensus 87 ~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (473)
..+ +..+||+||++... +.. .+.+.++ ....++++..|+.++.. .........+..+++...+
T Consensus 74 -------~~~-~~~~~dvv~~~~~~--~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 137 (359)
T cd03808 74 -------RLL-RKERPDIVHTHTPK--PGI-LGRLAARLAGVPKVIYTVHGLGFVF-----TSGGLKRRLYLLLERLALR 137 (359)
T ss_pred -------HHH-HhcCCCEEEEcccc--chh-HHHHHHHHcCCCCEEEEecCcchhh-----ccchhHHHHHHHHHHHHHh
Confidence 111 33789999998742 222 3444554 56678888889875321 1122244566778888889
Q ss_pred cCCEEEEcCHHHHHHHHHHhCC----ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccc
Q 011979 166 MANGCLCVTQAMQHELAQNWGI----KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (473)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~g~----~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
.+|.++++|+.+++.+.+.... ...+.+++.+ +.+.+...
T Consensus 138 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 182 (359)
T cd03808 138 FTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPE----------------------------------- 182 (359)
T ss_pred hccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCcccc-----------------------------------
Confidence 9999999999999999886543 2344444432 22221110
Q ss_pred hhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEE
Q 011979 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (473)
. .++.+..++|+|++.+.||++.+++++..+.+ ..++++|+
T Consensus 183 -----------~-~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~---------------------------~~~~~~l~ 223 (359)
T cd03808 183 -----------P-IPEDDPVFLFVARLLKDKGIDELLEAARILKA---------------------------KGPNVRLL 223 (359)
T ss_pred -----------c-cCCCCcEEEEEeccccccCHHHHHHHHHHHHh---------------------------cCCCeEEE
Confidence 0 12234499999999999999999999999876 26889999
Q ss_pred EEcCCCChHHHHHH-HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 321 ITGKGPDKESYEEK-IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 321 ivG~g~~~~~l~~~-~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
|+|.++........ +...+. ++|.+.|. .+++..+|+.||++++ ++..|++|++++|||+||+|||+++.++
T Consensus 224 i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~i~---ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~ 297 (359)
T cd03808 224 LVGDGDEENPAAILEIEKLGLEGRVEFLGF---RDDVPELLAAADVFVL---PSYREGLPRVLLEAMAMGRPVIATDVPG 297 (359)
T ss_pred EEcCCCcchhhHHHHHHhcCCcceEEEeec---cccHHHHHHhccEEEe---cCcccCcchHHHHHHHcCCCEEEecCCC
Confidence 99999876555543 666666 79999998 8899999999999999 6767999999999999999999999999
Q ss_pred cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHH
Q 011979 399 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEH 459 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 459 (473)
..+++.++.+|++++ |+++++++|.+++.+ ++.++++++++++. .+.++|+...++.
T Consensus 298 ~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 298 CREAVIDGVNGFLVPPGDAEALADAIERLIED----PELRARMGQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred chhhhhcCcceEEECCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 999999899999996 699999999999885 88999999999988 4789888776654
No 29
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=5.5e-31 Score=263.16 Aligned_cols=350 Identities=21% Similarity=0.212 Sum_probs=253.3
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHH
Q 011979 6 RACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (473)
+++++.....||.+++. ..+..|.++ |++|.+++..............+++++.++. ... .........+.+.
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~--~~~---~~~~~~~~~~~~~ 75 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRD-RFEHVVISLTDRGELGEELEEAGVPVYCLGK--RPG---RPDPGALLRLYKL 75 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhc-cceEEEEecCcchhhhHHHHhcCCeEEEEec--ccc---cccHHHHHHHHHH
Confidence 44555555567777765 455666676 9999999976443333333456888888872 111 1111122222222
Q ss_pred HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhh-CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
+ +..+||+||++.+.... ...+.... .+.+++++.|+..... .........++++.+
T Consensus 76 ~------------~~~~~div~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~ 133 (365)
T cd03807 76 I------------RRLRPDVVHTWMYHADL---YGGLAARLAGVPPVIWGIRHSDLDL-------GKKSTRLVARLRRLL 133 (365)
T ss_pred H------------HhhCCCEEEeccccccH---HHHHHHHhcCCCcEEEEecCCcccc-------cchhHhHHHHHHHHh
Confidence 2 23789999998754222 23334444 6889999999984311 122334556778888
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCcc
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKAD 239 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (473)
.+.+|.++++|+..++.+.+. +.+ +.+++|+.+ ..|.+... .+...+.+++
T Consensus 134 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~----------------------- 188 (365)
T cd03807 134 SSFIPLIVANSAAAAEYHQAI-GYPPKKIVVIPNGVDTERFSPDLD-ARARLREELG----------------------- 188 (365)
T ss_pred ccccCeEEeccHHHHHHHHHc-CCChhheeEeCCCcCHHhcCCccc-chHHHHHhcC-----------------------
Confidence 888999999999999888874 443 778899843 44433321 2222222322
Q ss_pred chhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEE
Q 011979 240 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 319 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (473)
+++ .+..++|+|++.+.||++.+++|+..+.++ .++++|
T Consensus 189 -------------~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l 227 (365)
T cd03807 189 -------------LPE-DTFLIGIVARLHPQKDHATLLRAAALLLKK---------------------------FPNARL 227 (365)
T ss_pred -------------CCC-CCeEEEEecccchhcCHHHHHHHHHHHHHh---------------------------CCCeEE
Confidence 222 234899999999999999999999998773 688999
Q ss_pred EEEcCCCChHHHHHHHH-HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 320 IITGKGPDKESYEEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 320 ~ivG~g~~~~~l~~~~~-~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
+++|.|+....+++... ++++ ++|.+.|. .+++..+|+.||++++ ||..|++|++++|||+||+|||+++.+
T Consensus 228 ~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---ps~~e~~~~~~~Ea~a~g~PvI~~~~~ 301 (365)
T cd03807 228 LLVGDGPDRANLELLALKELGLEDKVILLGE---RSDVPALLNALDVFVL---SSLSEGFPNVLLEAMACGLPVVATDVG 301 (365)
T ss_pred EEecCCcchhHHHHHHHHhcCCCceEEEccc---cccHHHHHHhCCEEEe---CCccccCCcHHHHHHhcCCCEEEcCCC
Confidence 99999988887887777 7888 79999987 6899999999999999 676799999999999999999999999
Q ss_pred ccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 398 CIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 398 ~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
+..+++.+ +|++++ |+++++++|.+++++ ++.+.++++++++.. +.++|+...++..+
T Consensus 302 ~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 302 DNAELVGD--TGFLVPPGDPEALAEAIEALLAD----PALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred ChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999976 888885 799999999999995 788899999998876 56898887776544
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=8e-31 Score=287.28 Aligned_cols=370 Identities=17% Similarity=0.128 Sum_probs=242.7
Q ss_pred CeEEEEEecCCCCChhHHH-HHHHHHhhCCC------------cEEEEec--CC---CCCCcccccCCCEEEEEeecCCC
Q 011979 5 GRACVVVLGDLGRSPRMQY-QALSLARQMSL------------EVDVVAY--GG---SKPHAAILEHPSIHIHTMTQWPT 66 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~-~a~~L~~~~g~------------eV~vi~~--~~---~~~~~~~~~~~~i~i~~~~~~~~ 66 (473)
|+++++.....||++|+.. ++..+.+. ++ ++.|++. .. ...........|+.++.++..+
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~-~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~- 360 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSA-IQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQ- 360 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhc-ccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCC-
Confidence 4455666666788888775 45566664 43 3455543 11 1112223336799999987322
Q ss_pred CCCCCcchhHHHHHHHHH-------HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEE-EecCch
Q 011979 67 IPRGLPKVLKPVLLLLKP-------LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFG 138 (473)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~-~~h~~~ 138 (473)
..+.......+..+.+. ......-+..++ +..+||+||+|.+ ....++.++++..++|+|+ +.|++.
T Consensus 361 -~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~l-k~~kpDIVH~h~~---~a~~lg~lAa~~~gvPvIv~t~h~~~ 435 (694)
T PRK15179 361 -AWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVM-RSSVPSVVHIWQD---GSIFACALAALLAGVPRIVLSVRTMP 435 (694)
T ss_pred -ccCcccccccchhhHHHhhhcchhHHHHHHHHHHHH-HHcCCcEEEEeCC---cHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 11111100000000000 000001111222 3378999999984 3334566777777889876 567652
Q ss_pred hhhhhhhcCCCchHHHHHHHHHHHHh-hcCCEEEEcCHHHHHHHHHHhCCc---eEEeeCCC-CCCcccCChhHHHHHHH
Q 011979 139 YTLLSLSLGRRSHFVSIYRWIEKYYG-KMANGCLCVTQAMQHELAQNWGIK---ATVLYDQP-PEFFHPTSLEEKHELFC 213 (473)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~e~~~~-~~ad~vi~vS~~~~~~l~~~~g~~---~~vi~n~~-~~~f~~~~~~~~~~l~~ 213 (473)
... ....+...+..+.+.+. ..++.+++.|...++.+.+.++.+ +.|||||. .+.|.+... .+. .+.
T Consensus 436 ~~~------~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~-~~~-~~~ 507 (694)
T PRK15179 436 PVD------RPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDA-CTA-MMA 507 (694)
T ss_pred ccc------chhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCch-hhH-HHH
Confidence 110 11111122222222222 234567777888888887767764 88999994 455644321 111 111
Q ss_pred hhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhcc
Q 011979 214 RLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 293 (473)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~ 293 (473)
.+.. .. ++...+++++||+.+.||++.+++|+..+.++
T Consensus 508 ~~~~----------------------------------~~-~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~------- 545 (694)
T PRK15179 508 QFDA----------------------------------RT-SDARFTVGTVMRVDDNKRPFLWVEAAQRFAAS------- 545 (694)
T ss_pred hhcc----------------------------------cc-CCCCeEEEEEEeCCccCCHHHHHHHHHHHHHH-------
Confidence 1110 01 12233899999999999999999999988763
Q ss_pred CCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC
Q 011979 294 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS 372 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s 372 (473)
.|+++|+|+|+|+..+.++++++++++ ++|.|+|+ .++++.+|+.+|++|+ +|
T Consensus 546 --------------------~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~---~~dv~~ll~aaDv~Vl---pS 599 (694)
T PRK15179 546 --------------------HPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGL---SRRVGYWLTQFNAFLL---LS 599 (694)
T ss_pred --------------------CcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCC---cchHHHHHHhcCEEEe---cc
Confidence 689999999999999999999999999 89999998 5789999999999999 68
Q ss_pred CCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-
Q 011979 373 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG- 447 (473)
Q Consensus 373 ~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~- 447 (473)
..|+||++++|||+||+|||+|+.+|+.|+|.++.+|++++ | .++|+++|.+++.+...+ ..+++++++..
T Consensus 600 ~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~----~~l~~~ar~~a~ 675 (694)
T PRK15179 600 RFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAAD----PGIARKAADWAS 675 (694)
T ss_pred ccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhcc----HHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999996 4 468999999988753333 34566666655
Q ss_pred cccchHHHHHHHHH
Q 011979 448 LSARWATEWEEHAK 461 (473)
Q Consensus 448 ~~~~w~~~~~~~~~ 461 (473)
++|+|+...+++..
T Consensus 676 ~~FS~~~~~~~~~~ 689 (694)
T PRK15179 676 ARFSLNQMIASTVR 689 (694)
T ss_pred HhCCHHHHHHHHHH
Confidence 58999988777543
No 31
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=2.5e-31 Score=268.14 Aligned_cols=264 Identities=22% Similarity=0.201 Sum_probs=213.3
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..++|+||+|.+.. ...+..+.++..++|++++.|+... ...... +.++...+.+|.++++|+.++
T Consensus 77 ~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~vi~~s~~~~ 142 (355)
T cd03799 77 RLGIDHIHAHFGTT--PATVAMLASRLGGIPYSFTAHGKDI-------FRSPDA-----IDLDEKLARADFVVAISEYNR 142 (355)
T ss_pred hcCCCEEEECCCCc--hHHHHHHHHHhcCCCEEEEEecccc-------cccCch-----HHHHHHHhhCCEEEECCHHHH
Confidence 37899999998642 2224556666668999999997631 111110 345666788999999999999
Q ss_pred HHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 179 HELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 179 ~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.+.+.++. ++.+++|+.+ +.|.+.. ...
T Consensus 143 ~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------------------------------------------~~~ 175 (355)
T cd03799 143 QQLIRLLGCDPDKIHVVHCGVDLERFPPRP-----------------------------------------------PPP 175 (355)
T ss_pred HHHHHhcCCCcccEEEEeCCcCHHHcCCcc-----------------------------------------------ccc
Confidence 999886443 3789999854 3332221 001
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
.+.+..++|+|++.+.||++.+++++..+.+ ..++++++++|.|+..+.+++.
T Consensus 176 ~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~~~ 228 (355)
T cd03799 176 PGEPLRILSVGRLVEKKGLDYLLEALALLKD---------------------------RGIDFRLDIVGDGPLRDELEAL 228 (355)
T ss_pred cCCCeEEEEEeeeccccCHHHHHHHHHHHhh---------------------------cCCCeEEEEEECCccHHHHHHH
Confidence 1234489999999999999999999999876 2578999999999999999999
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC------CCCcHHHHHHHhcCCcEEEeccCccccceecCC
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG------LDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 407 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~------e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~ 407 (473)
++++++ ++|.+.|. ++.+++..+|++||++++| |.. |++|++++|||+||+|||+++.++..+++.++.
T Consensus 229 ~~~~~~~~~v~~~g~-~~~~~l~~~~~~adi~l~~---s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~ 304 (355)
T cd03799 229 IAELGLEDRVTLLGA-KSQEEVRELLRAADLFVLP---SVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGE 304 (355)
T ss_pred HHHcCCCCeEEECCc-CChHHHHHHHHhCCEEEec---ceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCC
Confidence 999988 79999998 9999999999999999994 544 999999999999999999999999999999998
Q ss_pred ceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 011979 408 NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 458 (473)
Q Consensus 408 ~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 458 (473)
+|++++ |+++++++|.+++++ ++.+.++++++++.. +.++|+...++
T Consensus 305 ~g~~~~~~~~~~l~~~i~~~~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 305 TGLLVPPGDPEALADAIERLLDD----PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred ceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999996 799999999999985 788999999999876 67998877653
No 32
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.5e-31 Score=265.88 Aligned_cols=336 Identities=16% Similarity=0.179 Sum_probs=243.0
Q ss_pred cCCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 011979 13 GDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (473)
Q Consensus 13 ~~~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (473)
++.||.+++.. .+..|.++ ||+|+|++....... ......++.+++++.... ..... .........
T Consensus 11 p~~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~------- 77 (357)
T cd03795 11 PDRGGIEQVIRDLAEGLAAR-GIEVAVLCASPEPKG-RDEERNGHRVIRAPSLLN-VASTP---FSPSFFKQL------- 77 (357)
T ss_pred CCCCcHHHHHHHHHHHHHhC-CCceEEEecCCCCcc-hhhhccCceEEEeecccc-ccccc---ccHHHHHHH-------
Confidence 44666666654 45677776 999999997654332 222344666777663211 11111 000100000
Q ss_pred HHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEE
Q 011979 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (473)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 171 (473)
. .+..++|+||++.+...... ..+.. .++.|+++++|+... ........+.++++.+.+.+|.++
T Consensus 78 --~--~~~~~~Dii~~~~~~~~~~~--~~~~~-~~~~~~i~~~h~~~~--------~~~~~~~~~~~~~~~~~~~~d~vi 142 (357)
T cd03795 78 --K--KLAKKADVIHLHFPNPLADL--ALLLL-PRKKPVVVHWHSDIV--------KQKLLLKLYRPLQRRFLRRADAIV 142 (357)
T ss_pred --H--hcCCCCCEEEEecCcchHHH--HHHHh-ccCceEEEEEcChhh--------ccchhhhhhhHHHHHHHHhcCEEE
Confidence 0 12478999999986554333 22222 257899999997632 122344556677888889999999
Q ss_pred EcCHHHHHHHHHHhC--CceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccc
Q 011979 172 CVTQAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAG 248 (473)
Q Consensus 172 ~vS~~~~~~l~~~~g--~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (473)
++|+.+++.+....+ .++.+++|+.+ ..|.+... ... ..
T Consensus 143 ~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~-~~~---~~---------------------------------- 184 (357)
T cd03795 143 ATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDA-LEE---AI---------------------------------- 184 (357)
T ss_pred eCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcch-hhh---Hh----------------------------------
Confidence 999999988776543 34888999854 44433321 110 00
Q ss_pred cccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh
Q 011979 249 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 328 (473)
Q Consensus 249 ~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~ 328 (473)
...+..+..++|+|++.+.||++.+++|++.+ . +++|+|+|+|+..
T Consensus 185 ---~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l------------------------------~-~~~l~i~G~g~~~ 230 (357)
T cd03795 185 ---WRRAAGRPFFLFVGRLVYYKGLDVLLEAAAAL------------------------------P-DAPLVIVGEGPLE 230 (357)
T ss_pred ---hcCCCCCcEEEEecccccccCHHHHHHHHHhc------------------------------c-CcEEEEEeCChhH
Confidence 01122234899999999999999999999986 2 6999999999998
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceec-C
Q 011979 329 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV-D 406 (473)
Q Consensus 329 ~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~-~ 406 (473)
+.+++.++++++ ++|.|+|. ++.+++..+++.||++++|.. +..|++|++++|||+||+|||+++.++..+.+.+ +
T Consensus 231 ~~~~~~~~~~~~~~~V~~~g~-v~~~~~~~~~~~ad~~i~ps~-~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~ 308 (357)
T cd03795 231 AELEALAAALGLLDRVRFLGR-LDDEEKAALLAACDVFVFPSV-ERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHG 308 (357)
T ss_pred HHHHHHHHhcCCcceEEEcCC-CCHHHHHHHHHhCCEEEeCCc-ccccccchHHHHHHHcCCCEEecCCCCchhHHhhCC
Confidence 999999988888 89999998 999999999999999999421 1468999999999999999999999999998886 8
Q ss_pred CceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHH
Q 011979 407 KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWAT 454 (473)
Q Consensus 407 ~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 454 (473)
.+|++++ |+++++++|.+++++ ++.+++|++++++.. +.++|+.
T Consensus 309 ~~g~~~~~~d~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 309 VTGLVVPPGDPAALAEAIRRLLED----PELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHhcchHh
Confidence 9999985 799999999999995 899999999999987 6688764
No 33
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.5e-31 Score=277.63 Aligned_cols=231 Identities=17% Similarity=0.232 Sum_probs=185.3
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc--eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCc
Q 011979 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIK--ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGM 233 (473)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~--~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (473)
.++++...+.||.++|+|+.+++.+.+.++.+ +.++|++.+ +.+...+.
T Consensus 211 ~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~---------------------------- 262 (463)
T PLN02949 211 AWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPL---------------------------- 262 (463)
T ss_pred HHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCc----------------------------
Confidence 34566777899999999999999998877653 678888743 22211100
Q ss_pred CCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc
Q 011979 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
...++++ .++++||+.++||++.+|+|+..+.++.. -.
T Consensus 263 ------------------~~~~~~~-~il~vGR~~~~Kg~~llI~A~~~l~~~~~-----------------------~~ 300 (463)
T PLN02949 263 ------------------ERSEDPP-YIISVAQFRPEKAHALQLEAFALALEKLD-----------------------AD 300 (463)
T ss_pred ------------------cccCCCC-EEEEEEeeeccCCHHHHHHHHHHHHHhcc-----------------------cc
Confidence 0111223 89999999999999999999998765200 01
Q ss_pred CCCEEEEEEcCCCC------hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh
Q 011979 314 YPRLLFIITGKGPD------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 386 (473)
Q Consensus 314 ~~~~~l~ivG~g~~------~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama 386 (473)
.|+++|+|+|+|+. .++++++++++++ ++|.|+|. ++.+++..+|++||+++. ++..|+||++++||||
T Consensus 301 ~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~-v~~~el~~ll~~a~~~v~---~s~~E~FGivvlEAMA 376 (463)
T PLN02949 301 VPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKN-VSYRDLVRLLGGAVAGLH---SMIDEHFGISVVEYMA 376 (463)
T ss_pred CCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCC-CCHHHHHHHHHhCcEEEe---CCccCCCChHHHHHHH
Confidence 37899999998742 2568889999999 79999998 999999999999999998 7889999999999999
Q ss_pred cCCcEEEeccCccc-cceec---CCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 011979 387 CGLPVCAVSYSCIE-ELVKV---DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKP 462 (473)
Q Consensus 387 ~G~PvI~~~~~~~~-e~i~~---~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 462 (473)
||+|||+++.+|.. +++.+ +.+|++++|+++++++|.+++++ +++.+++|++++++.+++|+|+...++..+.
T Consensus 377 ~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~---~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~ 453 (463)
T PLN02949 377 AGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRM---RETERLEIAAAARKRANRFSEQRFNEDFKDA 453 (463)
T ss_pred cCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999988864 66655 67899999999999999999985 5788899999999988889999877776554
Q ss_pred HH
Q 011979 463 LI 464 (473)
Q Consensus 463 ~~ 464 (473)
+-
T Consensus 454 i~ 455 (463)
T PLN02949 454 IR 455 (463)
T ss_pred HH
Confidence 43
No 34
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.6e-30 Score=258.25 Aligned_cols=280 Identities=23% Similarity=0.338 Sum_probs=221.5
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..++|+||++++...... .+.++..++|+++++|+..+.... .............++...+.+|.++++|+.++
T Consensus 83 ~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 83 RERFDVVHAHDWLALLAA---ALAARLLGIPLVLTVHGLEFGRPG---NELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hcCCcEEEEechhHHHHH---HHHHHhcCCcEEEEeccchhhccc---cchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 368999999996544332 255667889999999998532211 01122244556778888889999999999999
Q ss_pred HHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 179 HELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 179 ~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.+.+.++. ++.+++++.+ ..+.+.. .+.+.. ...
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~-------------------------------------~~~ 195 (374)
T cd03801 157 EELRELGGVPPEKITVIPNGVDTERFRPAP----RAARRR-------------------------------------LGI 195 (374)
T ss_pred HHHHhcCCCCCCcEEEecCcccccccCccc----hHHHhh-------------------------------------cCC
Confidence 999988776 5888999843 4443321 111111 112
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
...+..++|+|++...||++.+++++..+.++ .++++|+++|.++..+.+++.
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~~ 248 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDLLLEALAKLRKE---------------------------YPDVRLVIVGDGPLREELEAL 248 (374)
T ss_pred cCCCeEEEEecchhhhcCHHHHHHHHHHHhhh---------------------------cCCeEEEEEeCcHHHHHHHHH
Confidence 22334899999999999999999999998773 578999999999888888888
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 413 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~ 413 (473)
+++++. ++|.+.|. ++.+++..+++.||++++ ++..+++|++++|||++|+|||+++.++..+++.++.+|++++
T Consensus 249 ~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~---~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~ 324 (374)
T cd03801 249 AAELGLGDRVTFLGF-VPDEDLPALYAAADVFVL---PSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVP 324 (374)
T ss_pred HHHhCCCcceEEEec-cChhhHHHHHHhcCEEEe---cchhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeC
Confidence 888888 79999998 999999999999999999 5655899999999999999999999999999999899999997
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hccccchHHHHHHHH
Q 011979 414 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWEEHA 460 (473)
Q Consensus 414 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~ 460 (473)
|+++++++|.+++++ ++.++++++++++ ..+.++|+...++..
T Consensus 325 ~~~~~~l~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 325 PGDPEALAEAILRLLDD----PELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred CCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 489999999999885 8889999999984 346888887666543
No 35
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.8e-30 Score=261.04 Aligned_cols=346 Identities=17% Similarity=0.183 Sum_probs=237.6
Q ss_pred eEEEEEecCCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHH
Q 011979 6 RACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (473)
++++......||.++... .+..|.+. ||+|++++..+..... ... .......+. . ......+...+..+.
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~-~~~-~~~~~~~~~---~-~~~~~~~~~~~~~~~-- 72 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAK-GHQVAIISLTGESEVK-PPI-DATIILNLN---M-SKNPLSFLLALWKLR-- 72 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccC-CceEEEEEEeCCCCcc-chh-hccceEEec---c-cccchhhHHHHHHHH--
Confidence 344443334566666654 34566665 9999999965433211 111 111112222 1 011111111111111
Q ss_pred HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
.++ +..+||+||+|.+.. ..+..+++. ..+.|++++.|+... .. +...+..+..
T Consensus 73 ---------~~~-~~~~pdiv~~~~~~~---~~~~~l~~~~~~~~~~v~~~h~~~~---------~~---~~~~~~~~~~ 127 (360)
T cd04951 73 ---------KIL-RQFKPDVVHAHMFHA---NIFARLLRLFLPSPPLICTAHSKNE---------GG---RLRMLAYRLT 127 (360)
T ss_pred ---------HHH-HhcCCCEEEEcccch---HHHHHHHHhhCCCCcEEEEeeccCc---------hh---HHHHHHHHHH
Confidence 112 237899999998543 223444444 346789999998731 11 1223445566
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCcc
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKAD 239 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (473)
.+.++.++++|+..++++.+..+. ++.++||+.+ ..|.+.. ..+..++.+++
T Consensus 128 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~-~~~~~~~~~~~----------------------- 183 (360)
T cd04951 128 DFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDP-ARRLKIRNALG----------------------- 183 (360)
T ss_pred hhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcch-HHHHHHHHHcC-----------------------
Confidence 667889999999999998876433 3788999844 4554432 22333443332
Q ss_pred chhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEE
Q 011979 240 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 319 (473)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (473)
+.+++ .+++|+|++.+.||++.+++|+..+.++ .|+++|
T Consensus 184 -------------~~~~~-~~~l~~g~~~~~kg~~~li~a~~~l~~~---------------------------~~~~~l 222 (360)
T cd04951 184 -------------VKNDT-FVILAVGRLVEAKDYPNLLKAFAKLLSD---------------------------YLDIKL 222 (360)
T ss_pred -------------cCCCC-EEEEEEeeCchhcCcHHHHHHHHHHHhh---------------------------CCCeEE
Confidence 22333 3899999999999999999999998763 589999
Q ss_pred EEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 320 IITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 320 ~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
+|+|+|+..+.+++.++++++ ++|.|+|+ .+++..+|+.||++++ +|..|++|++++|||++|+|||+++.++
T Consensus 223 ~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---~s~~e~~~~~~~Ea~a~G~PvI~~~~~~ 296 (360)
T cd04951 223 LIAGDGPLRATLERLIKALGLSNRVKLLGL---RDDIAAYYNAADLFVL---SSAWEGFGLVVAEAMACELPVVATDAGG 296 (360)
T ss_pred EEEcCCCcHHHHHHHHHhcCCCCcEEEecc---cccHHHHHHhhceEEe---cccccCCChHHHHHHHcCCCEEEecCCC
Confidence 999999999999999999988 78999998 6899999999999999 6777999999999999999999999999
Q ss_pred cccceecCCceEEe--CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 399 IEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 399 ~~e~i~~~~~G~~~--~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
..|++.+ +|+++ +|+++++++|.+++++ +++.++.++++.....+.++|+...+++.+
T Consensus 297 ~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 356 (360)
T cd04951 297 VREVVGD--SGLIVPISDPEALANKIDEILKM---SGEERDIIGARRERIVKKFSINSIVQQWLT 356 (360)
T ss_pred hhhEecC--CceEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999976 66666 4799999999999965 567777777763334478999877766543
No 36
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=3e-30 Score=283.05 Aligned_cols=375 Identities=14% Similarity=0.103 Sum_probs=241.6
Q ss_pred HHhhCCC----cEEEEecCCCCC--------CcccccCCCEEEEEeecCCCCCCCCcch-hH--HHHHHHHHHHHHHHHH
Q 011979 28 LARQMSL----EVDVVAYGGSKP--------HAAILEHPSIHIHTMTQWPTIPRGLPKV-LK--PVLLLLKPLIQFFMLL 92 (473)
Q Consensus 28 L~~~~g~----eV~vi~~~~~~~--------~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 92 (473)
|+++ || +|+|+|...... .+.+...+++++.++|.-+....-++++ ++ .+.++..+... +.
T Consensus 300 La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~---~~ 375 (784)
T TIGR02470 300 IKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAED---AE 375 (784)
T ss_pred HHhc-CCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHH---HH
Confidence 3454 99 777999654321 1223335799999998322111011221 11 11222222222 11
Q ss_pred HHHhhh-hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCc-h--HHHHHH--HHHHHHhhc
Q 011979 93 WFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRS-H--FVSIYR--WIEKYYGKM 166 (473)
Q Consensus 93 ~~~~~~-~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~-~--~~~~~~--~~e~~~~~~ 166 (473)
..+... ..+||+||+|. +.+..++.+++...++|++.+.|.+.-......-.... . ...+.. ..|..+...
T Consensus 376 ~~~~~~~~~~pDlIHahy---~d~glva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~ 452 (784)
T TIGR02470 376 KEILAELQGKPDLIIGNY---SDGNLVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNA 452 (784)
T ss_pred HHHHHhcCCCCCEEEECC---CchHHHHHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhc
Confidence 111111 24799999998 66667789999999999999999885222110000000 0 011111 226677888
Q ss_pred CCEEEEcCHHHHH----HHHHH-----------h----CC-----ceEEeeCC-CCCCcccCChhH-HH-HHHHhhhhhc
Q 011979 167 ANGCLCVTQAMQH----ELAQN-----------W----GI-----KATVLYDQ-PPEFFHPTSLEE-KH-ELFCRLNKIL 219 (473)
Q Consensus 167 ad~vi~vS~~~~~----~l~~~-----------~----g~-----~~~vi~n~-~~~~f~~~~~~~-~~-~l~~~l~~~~ 219 (473)
||.||+.|..... .+.++ + |+ ++.++++| +.+.|.|.+... +. .+.......+
T Consensus 453 AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll 532 (784)
T TIGR02470 453 ADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELL 532 (784)
T ss_pred CCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhc
Confidence 9999999975532 22211 1 22 36889998 446676764322 11 1110000000
Q ss_pred cCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchh
Q 011979 220 HQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNE 299 (473)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~ 299 (473)
..+ ......+ .....+++| +++++||+.+.||++.|++|+..+...
T Consensus 533 ~~~--------------~~~~~~~------G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l------------- 578 (784)
T TIGR02470 533 FSL--------------EDNDEHY------GYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKL------------- 578 (784)
T ss_pred cch--------------hhHHHHh------CCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhh-------------
Confidence 000 0000000 001244566 899999999999999999999887541
Q ss_pred hHHHhhhccCccccCCCEEEEEEcCCCC------------hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHh----cC
Q 011979 300 EVFLKEISDGKQYLYPRLLFIITGKGPD------------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLG----SA 362 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~ivG~g~~------------~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~----~a 362 (473)
.++++|+|+|+|+. .+.+.++++++++ ++|.|+|...+..+..++|+ .+
T Consensus 579 --------------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~a 644 (784)
T TIGR02470 579 --------------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTK 644 (784)
T ss_pred --------------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccC
Confidence 35689999998752 1356678899999 89999997346777777775 34
Q ss_pred cEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011979 363 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLR 440 (473)
Q Consensus 363 di~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~ 440 (473)
|++|+ ||..|+||++++||||||+|||+|+.||+.|+|.++.+|++++ |+++++++|.++++....|++.+++|+
T Consensus 645 dVfV~---PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQ---PALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEE---CCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 79999 7899999999999999999999999999999999999999997 799999999998742223699999999
Q ss_pred HHHHHhc-cccchHHHHHHHH
Q 011979 441 NGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 441 ~~~~~~~-~~~~w~~~~~~~~ 460 (473)
+++++.+ +.|+|+...++++
T Consensus 722 ~~a~~rV~~~FSW~~~A~~ll 742 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIYSERLL 742 (784)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 9998865 6899988777764
No 37
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=4.8e-30 Score=273.49 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=211.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh--hCCCeEEEEecCchhhhh-hh----hcC-CCchH----HHHHH--HHHHHHhh
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLL-SL----SLG-RRSHF----VSIYR--WIEKYYGK 165 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~-~~----~~~-~~~~~----~~~~~--~~e~~~~~ 165 (473)
.+||+||+|+ +.+..+..++.. ..++|+|+|+|+..+... .. ..+ ....+ ...+. .+.+...+
T Consensus 132 ~~pDIiH~Hd---w~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~ 208 (485)
T PRK14099 132 FVPDIVHAHD---WQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ 208 (485)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH
Confidence 5899999999 555544544443 246899999999853210 00 000 00000 00000 13566678
Q ss_pred cCCEEEEcCHHHHHHHHHHh------------CCceEEeeCCC-CCCcccCChh----------------HHHHHHHhhh
Q 011979 166 MANGCLCVTQAMQHELAQNW------------GIKATVLYDQP-PEFFHPTSLE----------------EKHELFCRLN 216 (473)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~------------g~~~~vi~n~~-~~~f~~~~~~----------------~~~~l~~~l~ 216 (473)
.||.|+|+|+.+++++.+.+ ..++.+|+||. .+.|.|.... .+..++++++
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 288 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFG 288 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcC
Confidence 89999999999999987532 22489999994 4677765321 1234445544
Q ss_pred hhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCC
Q 011979 217 KILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDS 296 (473)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~ 296 (473)
.. ..++.+ +++++||+.++||++.|++|+..+.+
T Consensus 289 l~----------------------------------~~~~~~-li~~VgRL~~~KG~d~Li~A~~~l~~----------- 322 (485)
T PRK14099 289 LD----------------------------------PDPDAL-LLGVISRLSWQKGLDLLLEALPTLLG----------- 322 (485)
T ss_pred CC----------------------------------cccCCc-EEEEEecCCccccHHHHHHHHHHHHh-----------
Confidence 11 112233 88899999999999999999998865
Q ss_pred chhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCCcE-EEecCCCCcccHHHHHh-cCcEEEEeccCC
Q 011979 297 TNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRV-AFRTMWLSAEDYPLLLG-SADLGVCLHTSS 372 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~V-~~~g~~v~~~~i~~~l~-~adi~v~~~~~s 372 (473)
.+++|+|+|+|+. ++.+++++++++ .++ .++|+ .+++..+|. .||++|+ ||
T Consensus 323 ------------------~~~~lvivG~G~~~~~~~l~~l~~~~~-~~v~~~~G~---~~~l~~~~~a~aDifv~---PS 377 (485)
T PRK14099 323 ------------------EGAQLALLGSGDAELEARFRAAAQAYP-GQIGVVIGY---DEALAHLIQAGADALLV---PS 377 (485)
T ss_pred ------------------cCcEEEEEecCCHHHHHHHHHHHHHCC-CCEEEEeCC---CHHHHHHHHhcCCEEEE---CC
Confidence 3689999999863 567788877765 344 68887 789999874 7999999 78
Q ss_pred CCCCCcHHHHHHHhcCCcEEEeccCccccceecC---------CceEEeC--CHHHHHHHHHH---HHhCCCCCHHHHHH
Q 011979 373 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLM---LFKGFPDDSDVLKK 438 (473)
Q Consensus 373 ~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~---------~~G~~~~--~~~~la~~i~~---l~~~~~~~~~~~~~ 438 (473)
..|+||++++|||+||+|+|++++||+.|+|.++ .+|++++ |+++++++|.+ +++ |++.+++
T Consensus 378 ~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~----d~~~~~~ 453 (485)
T PRK14099 378 RFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA----DPVAWRR 453 (485)
T ss_pred ccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc----CHHHHHH
Confidence 8999999999999999988889999999999875 6899996 79999999997 454 5889999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 011979 439 LRNGTLEMGLSARWATEWEEHAKPLITEVISQ 470 (473)
Q Consensus 439 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 470 (473)
|++++.+ +.|+|+...+++ .++++++..+
T Consensus 454 l~~~~~~--~~fSw~~~a~~y-~~lY~~l~~~ 482 (485)
T PRK14099 454 LQRNGMT--TDVSWRNPAQHY-AALYRSLVAE 482 (485)
T ss_pred HHHHhhh--hcCChHHHHHHH-HHHHHHHHhh
Confidence 9999874 589999998886 5566666543
No 38
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=4.1e-30 Score=254.70 Aligned_cols=327 Identities=20% Similarity=0.245 Sum_probs=234.3
Q ss_pred CCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011979 15 LGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (473)
Q Consensus 15 ~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
.||..++.. .+..|.+. ||+|++++..... ........++.+..++.... ............+.+.+
T Consensus 12 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l-------- 79 (348)
T cd03820 12 AGGAERVLSNLANALAEK-GHEVTIISLDKGE-PPFYELDPKIKVIDLGDKRD--SKLLARFKKLRRLRKLL-------- 79 (348)
T ss_pred CCChHHHHHHHHHHHHhC-CCeEEEEecCCCC-CCccccCCccceeecccccc--cchhccccchHHHHHhh--------
Confidence 466666554 55667665 9999999976554 12223345677766662111 10111111111111121
Q ss_pred HHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCC-CeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEE
Q 011979 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (473)
Q Consensus 94 ~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (473)
+..+||+|+++.++ .. ..+.....+ .|++++.|+... ..... ......++.+.+.+|.+++
T Consensus 80 ----~~~~~d~i~~~~~~-~~----~~~~~~~~~~~~~i~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~d~ii~ 141 (348)
T cd03820 80 ----KNNKPDVVISFLTS-LL----TFLASLGLKIVKLIVSEHNSPD-------AYKKR--LRRLLLRRLLYRRADAVVV 141 (348)
T ss_pred ----cccCCCEEEEcCch-HH----HHHHHHhhccccEEEecCCCcc-------chhhh--hHHHHHHHHHHhcCCEEEE
Confidence 23789999999965 11 222222334 499999998732 11111 1111247788889999999
Q ss_pred cCHHHHHHHHHHhCCceEEeeCCCCC-CcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 173 VTQAMQHELAQNWGIKATVLYDQPPE-FFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 173 vS~~~~~~l~~~~g~~~~vi~n~~~~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+|+.++.......+.++.+++|+.+. .+.+.
T Consensus 142 ~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------------------------------------------------ 173 (348)
T cd03820 142 LTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS------------------------------------------------ 173 (348)
T ss_pred eCHHHHHHhhccCCCCeEEecCCcChhhcccc------------------------------------------------
Confidence 99999733333345558899988542 11110
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
.+..+..++++|++.+.||++.++++++.+.+ ..|+++|+|+|.|++.+.+
T Consensus 174 --~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~ 224 (348)
T cd03820 174 --SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK---------------------------KHPDWKLRIVGDGPEREAL 224 (348)
T ss_pred --CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEeCCCCHHHH
Confidence 01123389999999999999999999999876 3689999999999999989
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-CccccceecCCce
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDKNG 409 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i~~~~~G 409 (473)
++.++++++ ++|.+.|. .+++..+|+.||++++ +|..|++|++++|||+||+|||+++. ++..+++.++.+|
T Consensus 225 ~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~i~---ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g 298 (348)
T cd03820 225 EALIKELGLEDRVILLGF---TKNIEEYYAKASIFVL---TSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNG 298 (348)
T ss_pred HHHHHHcCCCCeEEEcCC---cchHHHHHHhCCEEEe---CccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcce
Confidence 999999998 78999987 8999999999999999 67779999999999999999999986 4566777777799
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011979 410 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 458 (473)
Q Consensus 410 ~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 458 (473)
++++ |+++++++|.+++++ ++.+++|++++++..++++|++..++
T Consensus 299 ~~~~~~~~~~~~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (348)
T cd03820 299 LLVPNGDVEALAEALLRLMED----EELRKRMGANARESAERFSIENIIKQ 345 (348)
T ss_pred EEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9996 689999999999885 99999999999888888998876654
No 39
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.8e-30 Score=259.01 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=212.4
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHH--HHHHHHHHHhhcCCEEEEcCHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS--IYRWIEKYYGKMANGCLCVTQA 176 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~ad~vi~vS~~ 176 (473)
..++|+|++++++...... +...++..++|++++.|+...... .....+.+ .....++...+.++.+++.|+.
T Consensus 85 ~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 85 IREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWA----LPHKALKKRLAWFLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred CCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEccccccccc----cccchhhhHHHHHHHHHHHHhcCCEEEECCHH
Confidence 3789999999866555443 444445578999999998732111 01222221 1234466777789999999988
Q ss_pred HHHHHHHHh-CCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 177 MQHELAQNW-GIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 177 ~~~~l~~~~-g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
....+.... ..++.+++|+.+ +.|.+..... . +..++ .+
T Consensus 160 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~------------------------------------~~ 200 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRG--R-RRKFP------------------------------------IL 200 (375)
T ss_pred HHHHHHhhCCcccEEEcCCCcChhccCcchhhh--h-hhhcc------------------------------------CC
Confidence 776665532 334889999844 4554432111 0 22111 22
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 332 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~ 332 (473)
+++ ..++|+|++.+.||++.+++|+..+.+ ..++++|+++|.++. ...++
T Consensus 201 ~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~~~ 252 (375)
T cd03821 201 PDK-RIILFLGRLHPKKGLDLLIEAFAKLAE---------------------------RFPDWHLVIAGPDEGGYRAELK 252 (375)
T ss_pred CCC-cEEEEEeCcchhcCHHHHHHHHHHhhh---------------------------hcCCeEEEEECCCCcchHHHHH
Confidence 233 389999999999999999999999887 368999999998753 34455
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEE
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL 411 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~ 411 (473)
..++++++ ++|.|+|. ++.+++..+|+.||++++ +|..|++|++++|||+||+|||+++.++..+++.+ .+|++
T Consensus 253 ~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~ 327 (375)
T cd03821 253 QIAAALGLEDRVTFTGM-LYGEDKAAALADADLFVL---PSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWV 327 (375)
T ss_pred HHHHhcCccceEEEcCC-CChHHHHHHHhhCCEEEe---ccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEE
Confidence 55688888 79999998 999999999999999999 67779999999999999999999999999999988 88999
Q ss_pred eC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHH
Q 011979 412 FS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEH 459 (473)
Q Consensus 412 ~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 459 (473)
++ +.++++++|.+++++ ++.++++++++++. .++++|+...+++
T Consensus 328 ~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 328 VDDDVDALAAALRRALEL----PQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred eCCChHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 87 579999999999995 78999999999998 5889988777664
No 40
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-29 Score=280.08 Aligned_cols=296 Identities=15% Similarity=0.162 Sum_probs=214.4
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh------hCCCeEEEEecCchhhhhh----hh-cC-CCchHH---H----HHHHH-
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLS----LS-LG-RRSHFV---S----IYRWI- 159 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~~----~~-~~-~~~~~~---~----~~~~~- 159 (473)
.+||+||+|+ +.+.+++.++.. +.++|+|+++|++.|.-.. .. .+ +...+. . ++..+
T Consensus 609 ~~PDIIH~HD---W~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN 685 (977)
T PLN02939 609 KKPDIIHCHD---WQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRIN 685 (977)
T ss_pred CCCCEEEECC---ccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchH
Confidence 5899999999 444433222111 3568999999999632100 00 00 000000 0 00001
Q ss_pred -HHHHhhcCCEEEEcCHHHHHHHHHHhC-----------CceEEeeCC-CCCCcccCCh----------------hHHHH
Q 011979 160 -EKYYGKMANGCLCVTQAMQHELAQNWG-----------IKATVLYDQ-PPEFFHPTSL----------------EEKHE 210 (473)
Q Consensus 160 -e~~~~~~ad~vi~vS~~~~~~l~~~~g-----------~~~~vi~n~-~~~~f~~~~~----------------~~~~~ 210 (473)
-+....+||.|+|||+.+++++...+| .++.+|+|| +.+.|.|... ..+..
T Consensus 686 ~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~a 765 (977)
T PLN02939 686 VVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAA 765 (977)
T ss_pred HHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHH
Confidence 122233699999999999999876433 136899999 4567776532 12444
Q ss_pred HHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhh
Q 011979 211 LFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAI 290 (473)
Q Consensus 211 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~ 290 (473)
++.++|.. ...++.| +++++||+.++||++.+++|+..+.+
T Consensus 766 LRkelGL~---------------------------------~~d~d~p-LIg~VGRL~~QKGiDlLleA~~~Ll~----- 806 (977)
T PLN02939 766 LRKQLGLS---------------------------------SADASQP-LVGCITRLVPQKGVHLIRHAIYKTAE----- 806 (977)
T ss_pred HHHHhCCC---------------------------------cccccce-EEEEeecCCcccChHHHHHHHHHHhh-----
Confidence 55555411 0012344 89999999999999999999988754
Q ss_pred hccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh---HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEE
Q 011979 291 LNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGV 366 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v 366 (473)
++++|+|+|+|++. +.+++++++++. ++|.|+|. .+......+|+.||++|
T Consensus 807 ------------------------~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~-~de~lah~IYAaADIFL 861 (977)
T PLN02939 807 ------------------------LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILK-YDEALSHSIYAASDMFI 861 (977)
T ss_pred ------------------------cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEec-cCHHHHHHHHHhCCEEE
Confidence 46899999999763 678888899988 78999988 66666789999999999
Q ss_pred EeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceec---------CCceEEeC--CHHHHHHHHHHHHhCCCCCHHH
Q 011979 367 CLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV---------DKNGLLFS--SSSELADQLLMLFKGFPDDSDV 435 (473)
Q Consensus 367 ~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~---------~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~ 435 (473)
+ ||..|+||++++|||+||+|+|++++||+.++|.+ +.+|++++ |+++++++|.++++.+.++++.
T Consensus 862 m---PSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~ 938 (977)
T PLN02939 862 I---PSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEV 938 (977)
T ss_pred E---CCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHH
Confidence 9 78899999999999999999999999999999875 47899986 7999999999988744446899
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011979 436 LKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 436 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 468 (473)
+.+|++++.. ..|+|+...+++. ++|.++.
T Consensus 939 ~~~L~~~am~--~dFSWe~~A~qYe-eLY~~ll 968 (977)
T PLN02939 939 WKQLVQKDMN--IDFSWDSSASQYE-ELYQRAV 968 (977)
T ss_pred HHHHHHHHHH--hcCCHHHHHHHHH-HHHHHHH
Confidence 9999988754 4799999988854 5565554
No 41
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=6.4e-30 Score=257.57 Aligned_cols=274 Identities=19% Similarity=0.212 Sum_probs=203.7
Q ss_pred CCCCEEEEeCCCchhHHHHHHHH---HhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcC-H
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWA---SSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT-Q 175 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~---~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS-~ 175 (473)
.+||+||++.............+ .+..++|+|++.|+.. ..... ....++++...+.+|.++++| +
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~-------~~~~~---~~~~~~~~~~~~~~d~ii~~s~~ 144 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVL-------LHEPR---PGDRALLRLLLRRADAVIVMSSE 144 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCC-------ccccc---hhhhHHHHHHHhcCCEEEEeeHH
Confidence 78999999763222111112222 2347899999999971 11111 122355677778999999995 5
Q ss_pred HHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 176 AMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 176 ~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
..++.+...+..++.+++|+.+ ..+.+.. .. ... ...
T Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~----~~~------------------------------------~~~ 182 (366)
T cd03822 145 LLRALLLRAYPEKIAVIPHGVPDPPAEPPE--SL----KAL------------------------------------GGL 182 (366)
T ss_pred HHHHHHhhcCCCcEEEeCCCCcCcccCCch--hh----Hhh------------------------------------cCC
Confidence 5554444432356899999854 3332221 10 111 011
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH--
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE-- 332 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~-- 332 (473)
. .+..++|+|++.+.||++.+++|+..+.++ .++++|+|+|+|.......
T Consensus 183 ~-~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 183 D-GRPVLLTFGLLRPYKGLELLLEALPLLVAK---------------------------HPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred C-CCeEEEEEeeccCCCCHHHHHHHHHHHHhh---------------------------CCCeEEEEeccCccchhhhhh
Confidence 2 234899999999999999999999999873 6899999999986543322
Q ss_pred ---HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCC--CCcHHHHHHHhcCCcEEEeccCccccceecC
Q 011979 333 ---EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL--DLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 406 (473)
Q Consensus 333 ---~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e--~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~ 406 (473)
++++++++ ++|.|+|+|++.+++..+|+.||++++ ||..| ++|++++|||+||+|||+++.++ .+.+.++
T Consensus 235 ~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~---ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~ 310 (366)
T cd03822 235 EAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVL---PYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDG 310 (366)
T ss_pred hhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEe---cccccccccchHHHHHHHcCCCEEecCCCC-hheeeeC
Confidence 23788888 799999988999999999999999999 67777 99999999999999999999998 7777788
Q ss_pred CceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 407 KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 407 ~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
.+|++++ |+++++++|..++++ ++.+.+|++++++..++++|+...++..+
T Consensus 311 ~~g~~~~~~d~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 363 (366)
T cd03822 311 GTGLLVPPGDPAALAEAIRRLLAD----PELAQALRARAREYARAMSWERVAERYLR 363 (366)
T ss_pred CCcEEEcCCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 8999985 699999999999985 88899999999998877999877766443
No 42
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=2.2e-30 Score=266.52 Aligned_cols=274 Identities=14% Similarity=0.151 Sum_probs=202.9
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+||+|++.. .. ...+.+..++|+|+++|.... ... ....+++ +...+.+|.+++.|+.
T Consensus 83 ~~~~Dvv~~h~~~~--~~--~~~~~~~~~~~~i~~~H~~~~-------~~~---~~~~~~~-~~~~~~~d~~i~~~~~-- 145 (372)
T cd03792 83 DLDADVVVIHDPQP--LA--LPLFKKKRGRPWIWRCHIDLS-------SPN---RRVWDFL-QPYIEDYDAAVFHLPE-- 145 (372)
T ss_pred cCCCCEEEECCCCc--hh--HHHhhhcCCCeEEEEeeeecC-------CCc---HHHHHHH-HHHHHhCCEEeecHHH--
Confidence 36899999998752 12 222233347899999997631 111 1222233 4455678988888732
Q ss_pred HHHHHHhCCceEEeeCCCC-CC-cc-cCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQNWGIKATVLYDQPP-EF-FH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~~g~~~~vi~n~~~-~~-f~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
++....+.+..++||+.+ .. +. +.+.+....++.+++ +++
T Consensus 146 -~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~ 188 (372)
T cd03792 146 -YVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYG------------------------------------IDP 188 (372)
T ss_pred -hcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhC------------------------------------CCC
Confidence 233322333448999844 21 21 223334444555544 233
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-----HH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----ES 330 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-----~~ 330 (473)
+++ +++++||+.+.||++.+++|+..+.++ .|+++|+|+|+|+.. +.
T Consensus 189 ~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~~~~~~ 240 (372)
T cd03792 189 ERP-YITQVSRFDPWKDPFGVIDAYRKVKER---------------------------VPDPQLVLVGSGATDDPEGWIV 240 (372)
T ss_pred CCc-EEEEEeccccccCcHHHHHHHHHHHhh---------------------------CCCCEEEEEeCCCCCCchhHHH
Confidence 444 899999999999999999999998762 578999999999642 23
Q ss_pred HHHHHHHcCC-CcEEEecCC-CCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCc
Q 011979 331 YEEKIRRLRL-KRVAFRTMW-LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 408 (473)
Q Consensus 331 l~~~~~~~~l-~~V~~~g~~-v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~ 408 (473)
++++.+..++ ++|.|+|.. ++.+++..+|+.||++++ +|..|+||++++||||||+|||+++.++..+++.++.+
T Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~---~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~ 317 (372)
T cd03792 241 YEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQ---KSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGET 317 (372)
T ss_pred HHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEe---CCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCc
Confidence 4555556666 789999872 278999999999999999 78899999999999999999999999999999999999
Q ss_pred eEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 409 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 409 G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
|+++++.++++++|.+++++ ++.+++|++++++.. ++|+|+...+++++
T Consensus 318 g~~~~~~~~~a~~i~~ll~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 318 GFLVDTVEEAAVRILYLLRD----PELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred eEEeCCcHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999985 888999999999976 68999887777553
No 43
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.2e-29 Score=265.96 Aligned_cols=354 Identities=12% Similarity=0.100 Sum_probs=227.4
Q ss_pred CCCCCeEEEEEecCC---CC-ChhHHHHHHHHHhhCC-CcEEEEecCCCCCCc--------------c----cccCCCEE
Q 011979 1 MGRRGRACVVVLGDL---GR-SPRMQYQALSLARQMS-LEVDVVAYGGSKPHA--------------A----ILEHPSIH 57 (473)
Q Consensus 1 m~~~~~~~i~~~~~~---g~-s~r~~~~a~~L~~~~g-~eV~vi~~~~~~~~~--------------~----~~~~~~i~ 57 (473)
|.+.+++.|+....+ +| +--....+..|+++ | |+|+|+++......+ + +.+..+-.
T Consensus 1 ~~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~-G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 1 MQKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD-GDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc-CCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCe
Confidence 555566777776543 33 35556677888887 9 799999975421100 0 00011234
Q ss_pred EEEeecCCCCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEE
Q 011979 58 IHTMTQWPTIPRGL-----PKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (473)
Q Consensus 58 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~ 132 (473)
+.+++..+.+.+.- .+.......+.+.+ +..+||+||+++|..+...-.+...+...++ +|.
T Consensus 80 v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l------------~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~ 146 (462)
T PLN02846 80 ISFLPKFSIKFYPGKFSTDKRSILPVGDISETI------------PDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIG 146 (462)
T ss_pred EEEecccccccCcccccccccccCChHHHHHHH------------HhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEE
Confidence 55665433322211 01000111122222 2378999999998654432113333333344 777
Q ss_pred EecCchhhhhhhhcCCCchH-HHHHHHHHHHHhh-cCCEEEEcCHHHHHHHHHHhCCceEEeeCC-CCCCcccCChhHHH
Q 011979 133 DWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGK-MANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKH 209 (473)
Q Consensus 133 ~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~-~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~-~~~~f~~~~~~~~~ 209 (473)
++|.....+.. .. ..... ..+.+.+.+++.+ .+|.+++.|..+++ +.+. .....+| +.++|++....
T Consensus 147 tyHT~y~~Y~~-~~-~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~~----~i~~v~GVd~~~f~~~~~~--- 216 (462)
T PLN02846 147 IVHTNYLEYVK-RE-KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPRS----IICNVHGVNPKFLEIGKLK--- 216 (462)
T ss_pred EECCChHHHHH-Hh-ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-HhhC----EEecCceechhhcCCCccc---
Confidence 89985222211 11 11111 2233344444433 38999999997776 4331 2223456 44666654211
Q ss_pred HHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC-CeEEEEEeeccCCCCHHHHHHHHHHhHHHHH
Q 011979 210 ELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR-PALVVSSTSWTPDEDFGILLEAALMYDRRVA 288 (473)
Q Consensus 210 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 288 (473)
..... ...+. ...++|+||+..+||++.||+|+..+.+.
T Consensus 217 -~~~~~-------------------------------------~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~-- 256 (462)
T PLN02846 217 -LEQQK-------------------------------------NGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE-- 256 (462)
T ss_pred -Hhhhc-------------------------------------CCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh--
Confidence 11100 01111 12689999999999999999999998762
Q ss_pred hhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 289 AILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
.|+++|+|+|+||+++++++++++++++...|.|. .+..+++..+|++|+
T Consensus 257 -------------------------~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~----~~~~~~~~~~DvFv~- 306 (462)
T PLN02846 257 -------------------------LSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR----DHADPLFHDYKVFLN- 306 (462)
T ss_pred -------------------------CCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC----CCHHHHHHhCCEEEE-
Confidence 57899999999999999999999999853336654 445579999999999
Q ss_pred ccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011979 369 HTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 369 ~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
+|..|++|++++||||||+|||+++.++ .+++.++.+|+.++|.+++++++..++.+ ++ +.++..+++
T Consensus 307 --pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~~~~~~a~ai~~~l~~---~~---~~~~~~a~~--- 374 (462)
T PLN02846 307 --PSTTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYDDGKGFVRATLKALAE---EP---APLTDAQRH--- 374 (462)
T ss_pred --CCCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecCCHHHHHHHHHHHHcc---Cc---hhHHHHHHH---
Confidence 7999999999999999999999999887 59999999999999999999999999985 23 233344443
Q ss_pred ccchHHHHHHHH
Q 011979 449 SARWATEWEEHA 460 (473)
Q Consensus 449 ~~~w~~~~~~~~ 460 (473)
.++|+...++.+
T Consensus 375 ~~SWe~~~~~l~ 386 (462)
T PLN02846 375 ELSWEAATERFL 386 (462)
T ss_pred hCCHHHHHHHHH
Confidence 788888777754
No 44
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.98 E-value=1.2e-29 Score=269.38 Aligned_cols=288 Identities=18% Similarity=0.148 Sum_probs=210.4
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhh------CCCeEEEEecCchhhhh----hhh-cCCC--chHH------HHHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSL------RRSAFIVDWHNFGYTLL----SLS-LGRR--SHFV------SIYRWIE 160 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~------~~~~~i~~~h~~~~~~~----~~~-~~~~--~~~~------~~~~~~e 160 (473)
.+||+||+|+. .+..+..+++.. .++|+|+++|+..+.-. ... .... .... .....++
T Consensus 128 ~~pDviH~hd~---~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (476)
T cd03791 128 WKPDIIHCHDW---HTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFL 204 (476)
T ss_pred CCCcEEEECch---HHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHH
Confidence 68999999994 444444444443 48999999999853110 000 0000 0000 0011456
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHH------------hCCceEEeeCCC-CCCcccCChh----------------HHHHH
Q 011979 161 KYYGKMANGCLCVTQAMQHELAQN------------WGIKATVLYDQP-PEFFHPTSLE----------------EKHEL 211 (473)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~------------~g~~~~vi~n~~-~~~f~~~~~~----------------~~~~l 211 (473)
+...+.||.++++|+.+++.+.+. ...++.+|+||. .+.|.|.... .+..+
T Consensus 205 ~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l 284 (476)
T cd03791 205 KAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAAL 284 (476)
T ss_pred HHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHH
Confidence 777889999999999999887531 124589999994 4667654221 23344
Q ss_pred HHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhh
Q 011979 212 FCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 291 (473)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~ 291 (473)
+++++. ...++.+ +++|+||+.+.||++.+++|+..+.+
T Consensus 285 ~~~~g~----------------------------------~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~------ 323 (476)
T cd03791 285 QEELGL----------------------------------PVDPDAP-LFGFVGRLTEQKGIDLLLEALPELLE------ 323 (476)
T ss_pred HHHcCC----------------------------------CcCCCCC-EEEEEeeccccccHHHHHHHHHHHHH------
Confidence 444441 1123445 89999999999999999999999876
Q ss_pred ccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEec
Q 011979 292 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLH 369 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~ 369 (473)
.+++|+|+|+|+. .+.++++++++ .+++.+.+. .+.+++..+|+.||++++
T Consensus 324 -----------------------~~~~lvi~G~g~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~~~~~~~~~aDv~l~-- 376 (476)
T cd03791 324 -----------------------LGGQLVILGSGDPEYEEALRELAARY-PGRVAVLIG-YDEALAHLIYAGADFFLM-- 376 (476)
T ss_pred -----------------------cCcEEEEEecCCHHHHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHhCCEEEC--
Confidence 2499999999864 35566666665 368888777 567788899999999999
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCC------ceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK------NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRN 441 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~------~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~ 441 (473)
||..|+||++++|||+||+|||+++.+|+.|++.++. +|++++ |+++++++|.++++... +++.+.++++
T Consensus 377 -pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~~~ 454 (476)
T cd03791 377 -PSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYR-DPEAWRKLQR 454 (476)
T ss_pred -CCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 7888999999999999999999999999999999987 999996 69999999999886422 4788888888
Q ss_pred HHHHhccccchHHHHHHHHHH
Q 011979 442 GTLEMGLSARWATEWEEHAKP 462 (473)
Q Consensus 442 ~~~~~~~~~~w~~~~~~~~~~ 462 (473)
++.+ ..++|+...+++.+.
T Consensus 455 ~~~~--~~fsw~~~a~~~~~~ 473 (476)
T cd03791 455 NAMA--QDFSWDRSAKEYLEL 473 (476)
T ss_pred HHhc--cCCChHHHHHHHHHH
Confidence 8876 369998888776543
No 45
>PRK14098 glycogen synthase; Provisional
Probab=99.98 E-value=2.7e-29 Score=267.94 Aligned_cols=292 Identities=14% Similarity=0.157 Sum_probs=215.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhh-------CCCeEEEEecCchhhh------hhhhcCCCchHHHHH-----HHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSL-------RRSAFIVDWHNFGYTL------LSLSLGRRSHFVSIY-----RWIEK 161 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~-------~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~-----~~~e~ 161 (473)
.+||+||+|+ +.+..+..+++.. .++|+|+++|+..+.- ..... +........ ..+.+
T Consensus 140 ~~pDiiH~hd---w~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~-~~~~~~~~~~~~~~~n~lk 215 (489)
T PRK14098 140 WKPDIIHCHD---WYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLL-PEEVCSGLHREGDEVNMLY 215 (489)
T ss_pred CCCCEEEecC---cHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhC-CHHhhhhhhhcCCcccHHH
Confidence 4799999999 5555455555432 3799999999974310 00000 000000000 12345
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHH----hC---------CceEEeeCC-CCCCcccCChh----------------HHHHH
Q 011979 162 YYGKMANGCLCVTQAMQHELAQN----WG---------IKATVLYDQ-PPEFFHPTSLE----------------EKHEL 211 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~----~g---------~~~~vi~n~-~~~~f~~~~~~----------------~~~~l 211 (473)
...+.||.|+|+|+.+++++.+. +| .++.+|+|| +.+.|.|.... .+..+
T Consensus 216 ~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l 295 (489)
T PRK14098 216 TGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKAL 295 (489)
T ss_pred HHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHH
Confidence 55678999999999999988752 22 348899999 45677765321 13334
Q ss_pred HHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhh
Q 011979 212 FCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 291 (473)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~ 291 (473)
+.+++. ...++.| +++++||+.+.||++.|++|+..+.+
T Consensus 296 ~~~lgl----------------------------------~~~~~~~-~i~~vgRl~~~KG~d~li~a~~~l~~------ 334 (489)
T PRK14098 296 LEEVGL----------------------------------PFDEETP-LVGVIINFDDFQGAELLAESLEKLVE------ 334 (489)
T ss_pred HHHhCC----------------------------------CCccCCC-EEEEeccccccCcHHHHHHHHHHHHh------
Confidence 444431 1123344 89999999999999999999999865
Q ss_pred ccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEec
Q 011979 292 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLH 369 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~ 369 (473)
++++|+|+|+|+. .+.+++++++++ ++|.|.|. ++.+++..+|+.||++++
T Consensus 335 -----------------------~~~~lvivG~G~~~~~~~l~~l~~~~~-~~V~~~g~-~~~~~~~~~~a~aDi~l~-- 387 (489)
T PRK14098 335 -----------------------LDIQLVICGSGDKEYEKRFQDFAEEHP-EQVSVQTE-FTDAFFHLAIAGLDMLLM-- 387 (489)
T ss_pred -----------------------cCcEEEEEeCCCHHHHHHHHHHHHHCC-CCEEEEEe-cCHHHHHHHHHhCCEEEe--
Confidence 4799999999974 467888888875 68999998 899999999999999999
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEeccCccccceec----CCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV----DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGT 443 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~----~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 443 (473)
||..|+||++.+|||+||+|+|+++.||+.|.+.+ +.+|++++ |+++++++|.++++.+ ++++.+.++++++
T Consensus 388 -PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~-~~~~~~~~~~~~~ 465 (489)
T PRK14098 388 -PGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALY-HDEERWEELVLEA 465 (489)
T ss_pred -CCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHHH
Confidence 78899999999999999999999999999988864 67999996 7999999999876422 2578888888777
Q ss_pred HHhccccchHHHHHHHHHHHHHHHh
Q 011979 444 LEMGLSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 444 ~~~~~~~~w~~~~~~~~~~~~~~~~ 468 (473)
.+ +.++|+...+++ .+++++++
T Consensus 466 ~~--~~fsw~~~a~~y-~~lY~~~~ 487 (489)
T PRK14098 466 ME--RDFSWKNSAEEY-AQLYRELL 487 (489)
T ss_pred hc--CCCChHHHHHHH-HHHHHHHh
Confidence 53 589999998886 55666554
No 46
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=3.9e-30 Score=273.90 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=216.7
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhc--C------CCchHHHHHHHHHHHHhhcCCEE
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL--G------RRSHFVSIYRWIEKYYGKMANGC 170 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~------~~~~~~~~~~~~e~~~~~~ad~v 170 (473)
..++|++|+|+++. ...++.++++..++|+|++.|+.......... . .+..+.++++.+++.+++.||.+
T Consensus 171 ~~~~dviH~~s~~~--~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 171 LPKADVYHAVSTGY--AGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCCEEeccCcch--HHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 46899999998542 33346677778899999999997321100000 0 01222355677888899999999
Q ss_pred EEcCHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcc
Q 011979 171 LCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (473)
Q Consensus 171 i~vS~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+++|+..++.+.+ +|.+ +.+||||.+ +.|.+....
T Consensus 249 i~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~---------------------------------------- 287 (475)
T cd03813 249 TTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA---------------------------------------- 287 (475)
T ss_pred EecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc----------------------------------------
Confidence 9999999987665 5653 789999954 455443110
Q ss_pred cccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC
Q 011979 247 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 326 (473)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~ 326 (473)
...+ .+..++|+||+.+.||++.+++|++.+.++ .|+++++|+|+|+
T Consensus 288 -----~~~~-~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~IvG~g~ 334 (475)
T cd03813 288 -----RPEK-EPPVVGLIGRVVPIKDIKTFIRAAAIVRKK---------------------------IPDAEGWVIGPTD 334 (475)
T ss_pred -----ccCC-CCcEEEEEeccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEECCCC
Confidence 0112 233899999999999999999999999873 6899999999985
Q ss_pred C----hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 327 D----KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 327 ~----~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
. .++++++++++++ ++|.|+| .+++.++|+.+|++|+ +|..|++|++++||||||+|||+|+.++..|
T Consensus 335 ~~~~~~~e~~~li~~l~l~~~V~f~G----~~~v~~~l~~aDv~vl---pS~~Eg~p~~vlEAma~G~PVVatd~g~~~e 407 (475)
T cd03813 335 EDPEYAEECRELVESLGLEDNVKFTG----FQNVKEYLPKLDVLVL---TSISEGQPLVILEAMAAGIPVVATDVGSCRE 407 (475)
T ss_pred cChHHHHHHHHHHHHhCCCCeEEEcC----CccHHHHHHhCCEEEe---CchhhcCChHHHHHHHcCCCEEECCCCChHH
Confidence 3 3556788899999 8999998 4899999999999999 6888999999999999999999999999999
Q ss_pred ceec------CCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 402 LVKV------DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 402 ~i~~------~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
++.+ +.+|++++ |+++++++|.+++++ ++.+++|++++++.. +.++|++..+++.
T Consensus 408 lv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~----~~~~~~~~~~a~~~v~~~~s~~~~~~~y~ 471 (475)
T cd03813 408 LIEGADDEALGPAGEVVPPADPEALARAILRLLKD----PELRRAMGEAGRKRVERYYTLERMIDSYR 471 (475)
T ss_pred HhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9988 56999986 799999999999985 899999999999877 5578887776644
No 47
>PLN02316 synthase/transferase
Probab=99.98 E-value=7e-29 Score=277.90 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=205.7
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh------hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEc
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (473)
.+||+||+|. +++..++.+++. +.++|+|+++|+..+ .. + ..+.....||.|+|+
T Consensus 708 ~~PDIIHaHD---W~talva~llk~~~~~~~~~~~p~V~TiHnl~~-------~~-n--------~lk~~l~~AD~ViTV 768 (1036)
T PLN02316 708 FHPDIIHCHD---WSSAPVAWLFKDHYAHYGLSKARVVFTIHNLEF-------GA-N--------HIGKAMAYADKATTV 768 (1036)
T ss_pred CCCCEEEECC---ChHHHHHHHHHHhhhhhccCCCCEEEEeCCccc-------ch-h--------HHHHHHHHCCEEEeC
Confidence 5899999999 444444555543 246899999998742 11 1 112345689999999
Q ss_pred CHHHHHHHHHHhC-----CceEEeeCC-CCCCcccCCh-----------------hHHHHHHHhhhhhccCCCCcccccC
Q 011979 174 TQAMQHELAQNWG-----IKATVLYDQ-PPEFFHPTSL-----------------EEKHELFCRLNKILHQPLGVQDCVS 230 (473)
Q Consensus 174 S~~~~~~l~~~~g-----~~~~vi~n~-~~~~f~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~ 230 (473)
|+.+++.+..... .++.+|+|| +.+.|.|... ..+..++.+++
T Consensus 769 S~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lG-------------- 834 (1036)
T PLN02316 769 SPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLG-------------- 834 (1036)
T ss_pred CHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhC--------------
Confidence 9999999876533 248999999 4456655421 11334455554
Q ss_pred CCcCCCCccchhhhcccccccccC-CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccC
Q 011979 231 NGMEGQKADETIFTSLAGIDVFLK-PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDG 309 (473)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
++ ++.| +++++||+.++||++.|++|+..+.+
T Consensus 835 ----------------------L~~~d~p-lVg~VGRL~~qKGvdlLi~Al~~ll~------------------------ 867 (1036)
T PLN02316 835 ----------------------LKQADLP-LVGIITRLTHQKGIHLIKHAIWRTLE------------------------ 867 (1036)
T ss_pred ----------------------CCcccCe-EEEEEeccccccCHHHHHHHHHHHhh------------------------
Confidence 22 2344 89999999999999999999998755
Q ss_pred ccccCCCEEEEEEcCCCC---hHHHHHHHHHcCC---CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHH
Q 011979 310 KQYLYPRLLFIITGKGPD---KESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD 383 (473)
Q Consensus 310 ~~~~~~~~~l~ivG~g~~---~~~l~~~~~~~~l---~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~E 383 (473)
++++|+|+|+||+ .+.++++++++++ ++|.|.|. .+......+|+.||++|+ ||..|+||++++|
T Consensus 868 -----~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~-~de~lah~iyaaADiflm---PS~~EP~GLvqLE 938 (1036)
T PLN02316 868 -----RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLT-YDEPLSHLIYAGADFILV---PSIFEPCGLTQLT 938 (1036)
T ss_pred -----cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEec-CCHHHHHHHHHhCcEEEe---CCcccCccHHHHH
Confidence 4689999999976 3678888998865 58999887 433333589999999999 7999999999999
Q ss_pred HHhcCCcEEEeccCccccceecC-------------CceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-
Q 011979 384 MFGCGLPVCAVSYSCIEELVKVD-------------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG- 447 (473)
Q Consensus 384 ama~G~PvI~~~~~~~~e~i~~~-------------~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~- 447 (473)
||+||+|+|++++||++++|.++ .+|++++ |+++++.+|.+++..+. +....+++.+++..
T Consensus 939 AMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~---~~~~~~~~~~r~~m~ 1015 (1036)
T PLN02316 939 AMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWY---DGRDWFNSLCKRVME 1015 (1036)
T ss_pred HHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHH
Confidence 99999999999999999999874 6899997 69999999999998633 33344455554432
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 011979 448 LSARWATEWEEHAKPLITEV 467 (473)
Q Consensus 448 ~~~~w~~~~~~~~~~~~~~~ 467 (473)
+.|+|+...+++. .+|.++
T Consensus 1016 ~dFSW~~~A~~Y~-~LY~~a 1034 (1036)
T PLN02316 1016 QDWSWNRPALDYM-ELYHSA 1034 (1036)
T ss_pred hhCCHHHHHHHHH-HHHHHH
Confidence 4799999988864 555554
No 48
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.98 E-value=1.5e-29 Score=254.86 Aligned_cols=273 Identities=21% Similarity=0.245 Sum_probs=211.3
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.++|+||++++..... +..++|+++++|+..+..... .........++..++.+.+.+|.++++|+.+++
T Consensus 84 ~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 84 LGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPE--YFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred cCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcc--cCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 7899999998543322 567899999999985322211 111122455677888888999999999999999
Q ss_pred HHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 180 ELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 180 ~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
.+.+.++. ++.+++|+.+ ..+.+...+. +.... ..+
T Consensus 154 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~------------------------------------~~~ 193 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE----VLRAL------------------------------------YLL 193 (365)
T ss_pred HHHHHhCcCHHHEEeeccccCccccCCCchHH----HHHHh------------------------------------cCC
Confidence 99988773 3889999854 4443332111 11111 122
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEK 334 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~~~ 334 (473)
++ ..++|+|++.+.||++.+++++..+.+. .++++|+++|.++. .....+.
T Consensus 194 ~~-~~i~~~G~~~~~K~~~~~l~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~~~ 245 (365)
T cd03809 194 PR-PYFLYVGTIEPRKNLERLLEAFARLPAK---------------------------GPDPKLVIVGKRGWLNEELLAR 245 (365)
T ss_pred CC-CeEEEeCCCccccCHHHHHHHHHHHHHh---------------------------cCCCCEEEecCCccccHHHHHH
Confidence 23 3899999999999999999999999873 55799999998754 3334444
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 413 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~ 413 (473)
+++++. ++|.++|. ++.+++..+++.||++++ ||..|++|++++|||++|+|||+++.+++.|++.+ +|++++
T Consensus 246 ~~~~~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~---ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~~ 319 (365)
T cd03809 246 LRELGLGDRVRFLGY-VSDEELAALYRGARAFVF---PSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYFD 319 (365)
T ss_pred HHHcCCCCeEEECCC-CChhHHHHHHhhhhhhcc---cchhccCCCCHHHHhcCCCcEEecCCCCccceecC--ceeeeC
Confidence 456777 79999998 999999999999999999 67778999999999999999999999999998854 566664
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011979 414 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 460 (473)
Q Consensus 414 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 460 (473)
|.++++++|.+++++ ++.+.++++++++..++++|+...++++
T Consensus 320 ~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 320 PLDPEALAAAIERLLED----PALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred CCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 799999999999884 9999999999998788999988887654
No 49
>PLN00142 sucrose synthase
Probab=99.97 E-value=1.7e-29 Score=277.27 Aligned_cols=374 Identities=14% Similarity=0.110 Sum_probs=240.9
Q ss_pred HHHHhhCCCcE----EEEecCCCCC-----C---cccccCCCEEEEEeecCCCCC-CCCcchh-H--HHHHHHHHHHHHH
Q 011979 26 LSLARQMSLEV----DVVAYGGSKP-----H---AAILEHPSIHIHTMTQWPTIP-RGLPKVL-K--PVLLLLKPLIQFF 89 (473)
Q Consensus 26 ~~L~~~~g~eV----~vi~~~~~~~-----~---~~~~~~~~i~i~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~ 89 (473)
..|+++ ||+| +|+|...... . +.+...+++++.++| ..+. ..++++. + .+.++..+...
T Consensus 322 ~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP--~g~~~~~l~~~i~ke~l~p~L~~f~~~-- 396 (815)
T PLN00142 322 LRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVP--FRTEKGILRKWISRFDVWPYLETFAED-- 396 (815)
T ss_pred HHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecC--CCCCccccccccCHHHHHHHHHHHHHH--
Confidence 455565 9977 4988543211 1 122334589999998 3332 1122211 1 11222222211
Q ss_pred HHHHHHhh-hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhh-c--CCCchHHHHH--HHHHHHH
Q 011979 90 MLLWFLCV-KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS-L--GRRSHFVSIY--RWIEKYY 163 (473)
Q Consensus 90 ~~~~~~~~-~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~--~~~~~~~~~~--~~~e~~~ 163 (473)
+...+.. ....||+||.|. +.+..++..++...++|++.+.|.++-...... . ........+. ...|..+
T Consensus 397 -~~~~~~~~~~~~PDlIHaHY---wdsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a 472 (815)
T PLN00142 397 -AASEILAELQGKPDLIIGNY---SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIA 472 (815)
T ss_pred -HHHHHHHhcCCCCCEEEECC---ccHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHH
Confidence 1111111 124699999997 777778999999999999999998752221100 0 0001111111 2357888
Q ss_pred hhcCCEEEEcCHHHHHHH-------HHH------------hCC-----ceEEeeCC-CCCCcccCChhHHHHHHHhhhhh
Q 011979 164 GKMANGCLCVTQAMQHEL-------AQN------------WGI-----KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKI 218 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l-------~~~------------~g~-----~~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~ 218 (473)
...||.||+.|...+..+ ... .|+ ++.++++| +...|.|.....+ .+ ..+.
T Consensus 473 ~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~-rl-~~l~-- 548 (815)
T PLN00142 473 MNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQK-RL-TSLH-- 548 (815)
T ss_pred HHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHh-hH-Hhhc--
Confidence 889999999998776422 111 122 46889988 4465666542211 11 0110
Q ss_pred ccCCCCcccccCCCcCCCCccchhhhcc-cccccc--cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCC
Q 011979 219 LHQPLGVQDCVSNGMEGQKADETIFTSL-AGIDVF--LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDD 295 (473)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~ 295 (473)
++++ ...|... ...... ..+++| +++++||+.+.||++.||+|+..+.+
T Consensus 549 ------------n~I~-----~~l~~~~~~~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~---------- 600 (815)
T PLN00142 549 ------------PSIE-----ELLYSPEQNDEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKR---------- 600 (815)
T ss_pred ------------ccch-----hhcCChHHHHHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHH----------
Confidence 0000 0000000 000001 133455 89999999999999999999998765
Q ss_pred CchhhHHHhhhccCccccCCCEEEEEEcCCCC------h------HHHHHHHHHcCC-CcEEEecCC---CCcccHHHHH
Q 011979 296 STNEEVFLKEISDGKQYLYPRLLFIITGKGPD------K------ESYEEKIRRLRL-KRVAFRTMW---LSAEDYPLLL 359 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~------~------~~l~~~~~~~~l-~~V~~~g~~---v~~~~i~~~l 359 (473)
..++++|+|+|+|.+ . +.+.++++++++ ++|.|+|.. ++.+++..++
T Consensus 601 -----------------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~i 663 (815)
T PLN00142 601 -----------------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYI 663 (815)
T ss_pred -----------------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHH
Confidence 246899999998721 1 346678899999 799999861 2335666666
Q ss_pred h-cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHH
Q 011979 360 G-SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVL 436 (473)
Q Consensus 360 ~-~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~ 436 (473)
. .+|++|+ ||..|+||++++||||||+|||+|+.||+.|+|.++.+|++++ |+++++++|.+++.....|++.+
T Consensus 664 adaaDVfVl---PS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 664 ADTKGAFVQ---PALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred HhhCCEEEe---CCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 6 4799999 7899999999999999999999999999999999999999996 79999999988764323369999
Q ss_pred HHHHHHHHHhc-cccchHHHHHHHH
Q 011979 437 KKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 437 ~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
++|+++|++.+ +.|+|+...++++
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll 765 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLL 765 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999998876 6799887776654
No 50
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=3.3e-29 Score=250.11 Aligned_cols=273 Identities=24% Similarity=0.326 Sum_probs=212.3
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..++|+|+++.+ .+........++..++|++++.|+...... ... ...+..++...+.+|.++++|+.++
T Consensus 91 ~~~~dii~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~~----~~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 91 RFRPDLIHAHFA--YPDGFAAALLKRKLGIPLVVTLHGSDVNLL----PRK----RLLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred cCCCCEEEEecc--chHHHHHHHHHHhcCCCEEEEeecchhccc----Cch----hhHHHHHHHHHhcCCeEEeCCHHHH
Confidence 478999999964 333334566666777899999999843111 111 1345667778889999999999999
Q ss_pred HHHHHH--hCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQN--WGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~--~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.+.+. .+.++.+++++.+ ..+.+...... .++ ...
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~-------------------------------------~~~ 199 (377)
T cd03798 161 DELKALGIDPEKVTVIPNGVDTERFSPADRAEA----RKL-------------------------------------GLP 199 (377)
T ss_pred HHHHHhcCCCCceEEcCCCcCcccCCCcchHHH----Hhc-------------------------------------cCC
Confidence 999886 3455889999843 44544322111 111 112
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~ 335 (473)
+.+..++++|++.+.||++.+++++..+.+ ..++++++++|.|+..+.+++.+
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~---------------------------~~~~~~l~i~g~~~~~~~~~~~~ 252 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLK---------------------------KRPDVHLVIVGDGPLREALEALA 252 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEcCCcchHHHHHHH
Confidence 233489999999999999999999999876 35789999999999888899999
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC-
Q 011979 336 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS- 413 (473)
Q Consensus 336 ~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~- 413 (473)
+++++ ++|.+.|. ++.+++.+++++||++++ ++..+++|++++|||++|+|||+++.++..+++.++.+|++++
T Consensus 253 ~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~---~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~ 328 (377)
T cd03798 253 AELGLEDRVTFLGA-VPHEEVPAYYAAADVFVL---PSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPP 328 (377)
T ss_pred HhcCCcceEEEeCC-CCHHHHHHHHHhcCeeec---chhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECC
Confidence 98888 79999998 999999999999999999 5666899999999999999999999999999999999999986
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HhccccchHHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTL-EMGLSARWATEWEEH 459 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~ 459 (473)
|+++++++|.+++++ ++. ++.+++. ...+.++|+...++.
T Consensus 329 ~~~~~l~~~i~~~~~~----~~~--~~~~~~~~~~~~~~s~~~~~~~~ 370 (377)
T cd03798 329 GDPEALAEAILRLLAD----PWL--RLGRAARRRVAERFSWENVAERL 370 (377)
T ss_pred CCHHHHHHHHHHHhcC----cHH--HHhHHHHHHHHHHhhHHHHHHHH
Confidence 799999999999986 444 4444443 434678887666553
No 51
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=3.7e-29 Score=250.97 Aligned_cols=311 Identities=14% Similarity=0.093 Sum_probs=215.1
Q ss_pred CCCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 011979 14 DLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (473)
Q Consensus 14 ~~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
.+|+.++.. .++..|.++ ||+|++++......... ..... +.... ... .......... ...+
T Consensus 17 ~~GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~--------~~~~~--~~~~~-~~~-~~~~~~~~~~----~~~~ 79 (335)
T cd03802 17 AYGGTERVVAALTEGLVAR-GHEVTLFASGDSKTAAP--------LVPVV--PEPLR-LDA-PGRDRAEAEA----LALA 79 (335)
T ss_pred ccCcHHHHHHHHHHHHHhc-CceEEEEecCCCCcccc--------eeecc--CCCcc-ccc-chhhHhhHHH----HHHH
Confidence 577777744 556777776 99999999765432111 11111 00000 000 0000000001 1111
Q ss_pred HHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEE
Q 011979 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (473)
Q Consensus 93 ~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (473)
...+ +..++|+||+|.+..... .++..+.|+|++.|+... ..... .......++.+++
T Consensus 80 ~~~~-~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~-------~~~~~--------~~~~~~~~~~~~~ 137 (335)
T cd03802 80 ERAL-AAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPD-------PELLK--------LYYAARPDVPFVS 137 (335)
T ss_pred HHHH-hcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCC-------cccch--------HHHhhCcCCeEEE
Confidence 1222 347899999998543221 455678999999998842 11111 1122356788999
Q ss_pred cCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 173 VTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 173 vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+|+..++.+... .++.+++|+.+ +.|++..
T Consensus 138 ~s~~~~~~~~~~--~~~~vi~ngvd~~~~~~~~----------------------------------------------- 168 (335)
T cd03802 138 ISDAQRRPWPPL--PWVATVHNGIDLDDYPFRG----------------------------------------------- 168 (335)
T ss_pred ecHHHHhhcccc--cccEEecCCcChhhCCCCC-----------------------------------------------
Confidence 999998777553 55889999844 4443311
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
. +...++|+|++.+.||++.++++++. .+++|+|+|.|+..+.+
T Consensus 169 ---~-~~~~i~~~Gr~~~~Kg~~~li~~~~~--------------------------------~~~~l~i~G~~~~~~~~ 212 (335)
T cd03802 169 ---P-KGDYLLFLGRISPEKGPHLAIRAARR--------------------------------AGIPLKLAGPVSDPDYF 212 (335)
T ss_pred ---C-CCCEEEEEEeeccccCHHHHHHHHHh--------------------------------cCCeEEEEeCCCCHHHH
Confidence 1 12289999999999999999998754 46899999999887777
Q ss_pred HHHHHHcC-C-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEeccCccccceecCCc
Q 011979 332 EEKIRRLR-L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 408 (473)
Q Consensus 332 ~~~~~~~~-l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~ 408 (473)
...+++.. + ++|.|.|+ ++.+++..+++.||++++ +| ..|++|++++||||||+|||+++.++..|++.++.+
T Consensus 213 ~~~~~~~~~~~~~v~~~G~-~~~~~~~~~~~~~d~~v~---ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~ 288 (335)
T cd03802 213 YREIAPELLDGPDIEYLGE-VGGAEKAELLGNARALLF---PILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVT 288 (335)
T ss_pred HHHHHHhcccCCcEEEeCC-CCHHHHHHHHHhCcEEEe---CCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCc
Confidence 77766664 3 79999998 999999999999999999 55 469999999999999999999999999999999999
Q ss_pred eEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 409 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 409 G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
|++++++++++++|.++.+. + .+..++.+. ++|+|+...+++.+
T Consensus 289 g~l~~~~~~l~~~l~~l~~~----~--~~~~~~~~~---~~~s~~~~~~~~~~ 332 (335)
T cd03802 289 GFLVDSVEELAAAVARADRL----D--RAACRRRAE---RRFSAARMVDDYLA 332 (335)
T ss_pred EEEeCCHHHHHHHHHHHhcc----H--HHHHHHHHH---HhCCHHHHHHHHHH
Confidence 99999999999999998664 1 223333343 48998877776554
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=1.1e-28 Score=244.62 Aligned_cols=333 Identities=23% Similarity=0.282 Sum_probs=228.0
Q ss_pred EEEEEec-CCCCChhH-HHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCE---EEEEeecCCCCCCCCcchhHHHHHH
Q 011979 7 ACVVVLG-DLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSI---HIHTMTQWPTIPRGLPKVLKPVLLL 81 (473)
Q Consensus 7 ~~i~~~~-~~g~s~r~-~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i---~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (473)
++++..+ ..||..+. ...+..|.++ ||+|++++............ ... ...... .. ..........+
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~-g~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~-~~~~~~~~~~~ 73 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKR-GYDVTLVVLRDEGDYLELLP-SNVKLIPVRVLK-----LK-SLRDLLAILRL 73 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhc-CceEEEEEcCCCCccccccc-cchhhhceeeee-----cc-cccchhHHHHH
Confidence 3333333 35665554 4566777676 99999999764432211111 111 111111 00 11111122222
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHH
Q 011979 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (473)
.+.+ +..++|+|+++.+ . ....+..+..+. ++|++++.|+...... ..... .. ..++
T Consensus 74 ~~~~------------~~~~~dii~~~~~-~-~~~~~~~~~~~~-~~~~i~~~~~~~~~~~----~~~~~-~~---~~~~ 130 (353)
T cd03811 74 RRLL------------RKEKPDVVISHLT-T-TPNVLALLAARL-GTKLIVWEHNSLSLEL----KRKLR-LL---LLIR 130 (353)
T ss_pred HHHH------------HhcCCCEEEEcCc-c-chhHHHHHHhhc-CCceEEEEcCcchhhh----ccchh-HH---HHHH
Confidence 2222 2268999999986 2 222234444434 7999999999853211 11111 11 4677
Q ss_pred HHhhcCCEEEEcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCC
Q 011979 162 YYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQK 237 (473)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
...+.+|.++++|+.+++.+.+.++. ++.+++|+.+ ..+.+...... .+
T Consensus 131 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~---------------------- 183 (353)
T cd03811 131 KLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL-----EL---------------------- 183 (353)
T ss_pred hhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh-----hc----------------------
Confidence 78889999999999999999988773 4889999854 33433211000 00
Q ss_pred ccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCE
Q 011979 238 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
...+.+..++++|++.+.||++.+++|++.+.+ ..+++
T Consensus 184 ---------------~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~---------------------------~~~~~ 221 (353)
T cd03811 184 ---------------GIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK---------------------------EGPDA 221 (353)
T ss_pred ---------------CCCCCceEEEEEecchhhcChHHHHHHHHHhhh---------------------------cCCCc
Confidence 112234589999999999999999999999977 25789
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 318 LFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
+|+++|.|+..+.+++.++++++ ++|.+.|. .+++.++++.||++++ +|..|++|++++|||++|+|||+++.
T Consensus 222 ~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~i~---ps~~e~~~~~~~Ea~~~G~PvI~~~~ 295 (353)
T cd03811 222 RLVILGDGPLREELEALAKELGLADRVHFLGF---QSNPYPYLKAADLFVL---SSRYEGFPNVLLEAMALGTPVVATDC 295 (353)
T ss_pred eEEEEcCCccHHHHHHHHHhcCCCccEEEecc---cCCHHHHHHhCCEEEe---CcccCCCCcHHHHHHHhCCCEEEcCC
Confidence 99999999999999999999998 79999998 6789999999999999 67779999999999999999999999
Q ss_pred CccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011979 397 SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 446 (473)
Q Consensus 397 ~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 446 (473)
++..|++.++.+|++++ +.+++++.+..+... ..+++.+.++++++.+.
T Consensus 296 ~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 346 (353)
T cd03811 296 PGPREILEDGENGLLVPVGDEAALAAAALALLDL-LLDPELRERLAAAARER 346 (353)
T ss_pred CChHHHhcCCCceEEECCCCHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHH
Confidence 99999999999999996 577774433333322 22588888888866553
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=1.2e-28 Score=246.98 Aligned_cols=322 Identities=20% Similarity=0.220 Sum_probs=218.0
Q ss_pred CCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 011979 16 GRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (473)
Q Consensus 16 g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (473)
||..++. ..+..|.++ ||+|++++.......... ...+........+.................. .......+..
T Consensus 15 gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 90 (359)
T cd03823 15 GGAEVVAHDLAEALAKR-GHEVAVLTAGEDPPRQDK-EVIGVVVYGRPIDEVLRSALPRDLFHLSDYD--NPAVVAEFAR 90 (359)
T ss_pred cchHHHHHHHHHHHHhc-CCceEEEeCCCCCCCccc-ccccceeeccccccccCCCchhhhhHHHhcc--CHHHHHHHHH
Confidence 5666644 457788876 999999997654332221 1222332222100000110111000000000 0000111112
Q ss_pred HhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcC
Q 011979 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 95 ~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (473)
++ +..++|+||++.+..+... .....+..++|+++++|+.+. ..... .......|.++++|
T Consensus 91 ~~-~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~------~~~~~----------~~~~~~~d~ii~~s 151 (359)
T cd03823 91 LL-EDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWL------ICPRQ----------GLFKKGGDAVIAPS 151 (359)
T ss_pred HH-HHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeee------ecchh----------hhhccCCCEEEEeC
Confidence 22 3378999999986433322 333344567999999999842 11100 11112339999999
Q ss_pred HHHHHHHHHHhC--CceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 175 QAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 175 ~~~~~~l~~~~g--~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+.+++.+.+... .++.+++|+.+ ..+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~----------------------------------------------- 184 (359)
T cd03823 152 RFLLDRYVANGLFAEKISVIRNGIDLDRAKRPR----------------------------------------------- 184 (359)
T ss_pred HHHHHHHHHcCCCccceEEecCCcChhhccccc-----------------------------------------------
Confidence 999999987644 35889999844 3332211
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
...++.+..++|+|++.+.||++.++++++.+.+ ++++|+++|.|+.....
T Consensus 185 ~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-----------------------------~~~~l~i~G~~~~~~~~ 235 (359)
T cd03823 185 RAPPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-----------------------------GDIELVIVGNGLELEEE 235 (359)
T ss_pred cCCCCCceEEEEEecCccccCHHHHHHHHHHHHh-----------------------------cCcEEEEEcCchhhhHH
Confidence 0012234589999999999999999999998754 58999999999766544
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCC-CCCCcHHHHHHHhcCCcEEEeccCccccceecCCce
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 409 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~-~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G 409 (473)
.... +. ++|.++|+ ++.+++.++++.||++++ ||. .|++|++++|||+||+|||+++.++..+++.++.+|
T Consensus 236 ~~~~---~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~---ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g 308 (359)
T cd03823 236 SYEL---EGDPRVEFLGA-YPQEEIDDFYAEIDVLVV---PSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNG 308 (359)
T ss_pred HHhh---cCCCeEEEeCC-CCHHHHHHHHHhCCEEEE---cCcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcE
Confidence 4333 34 79999998 999999999999999999 564 799999999999999999999999999999999899
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 410 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 410 ~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
++++ |+++++++|.+++++ ++.++++++++++..
T Consensus 309 ~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~ 344 (359)
T cd03823 309 LLFPPGDAEDLAAALERLIDD----PDLLERLRAGIEPPR 344 (359)
T ss_pred EEECCCCHHHHHHHHHHHHhC----hHHHHHHHHhHHHhh
Confidence 9996 589999999999985 889999999998854
No 54
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=1.1e-28 Score=260.49 Aligned_cols=283 Identities=13% Similarity=0.121 Sum_probs=209.6
Q ss_pred hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEE-ecCchhhhhhhhcCCCchHHHHHHHHHH--HHhhcCCEEEEcC
Q 011979 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEK--YYGKMANGCLCVT 174 (473)
Q Consensus 98 ~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~ad~vi~vS 174 (473)
+..+||+||+|+. .+...+.+++.+.++|++++ .|.+ +. ......+..-+....+ .+...+| ++++|
T Consensus 277 r~~rpDIVHt~~~---~a~l~g~laA~lagvpviv~~~h~~-~~-----~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s 346 (578)
T PRK15490 277 CERKLDYLSVWQD---GACLMIALAALIAGVPRIQLGLRGL-PP-----VVRKRLFKPEYEPLYQALAVVPGVD-FMSNN 346 (578)
T ss_pred HHcCCCEEEEcCc---ccHHHHHHHHHhcCCCEEEEeeccc-CC-----cchhhHHHHHHHHhhhhceeEecch-hhhcc
Confidence 3489999999983 33335777787888999765 5553 11 0111111111111111 2234556 77899
Q ss_pred HHHHHHHHHHhCCc---eEEeeCC-CCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccc
Q 011979 175 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID 250 (473)
Q Consensus 175 ~~~~~~l~~~~g~~---~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
...++.+.+.++.+ +.+|||| ++..|.+... .....+..+..
T Consensus 347 ~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~-~~~~~r~~~~~--------------------------------- 392 (578)
T PRK15490 347 HCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSE-VPHKIWQQFTQ--------------------------------- 392 (578)
T ss_pred HHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccch-hhHHHHHHhhh---------------------------------
Confidence 99999888877765 8999999 4456666431 11122222210
Q ss_pred cccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHH
Q 011979 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 330 (473)
Q Consensus 251 ~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 330 (473)
.++++.+ +++++|++.+.||+..+++++..+.++ .|+++|+|+|+|+..++
T Consensus 393 -~l~~~~~-vIg~VgRl~~~Kg~~~LI~A~a~llk~---------------------------~pdirLvIVGdG~~~ee 443 (578)
T PRK15490 393 -KTQDADT-TIGGVFRFVGDKNPFAWIDFAARYLQH---------------------------HPATRFVLVGDGDLRAE 443 (578)
T ss_pred -ccCCCCc-EEEEEEEEehhcCHHHHHHHHHHHHhH---------------------------CCCeEEEEEeCchhHHH
Confidence 1122233 889999999999999999999887662 58999999999999999
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCce
Q 011979 331 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 409 (473)
Q Consensus 331 l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G 409 (473)
+++.++++++ ++|.|+|+ .+|++.+|+.+|++|+ ||..|+||++++||||||+|||+|+.+|..|+|.++.+|
T Consensus 444 Lk~la~elgL~d~V~FlG~---~~Dv~~~LaaADVfVl---PS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG 517 (578)
T PRK15490 444 AQKRAEQLGILERILFVGA---SRDVGYWLQKMNVFIL---FSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSG 517 (578)
T ss_pred HHHHHHHcCCCCcEEECCC---hhhHHHHHHhCCEEEE---cccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcE
Confidence 9999999999 89999998 7899999999999999 788899999999999999999999999999999999999
Q ss_pred EEeC--CHHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHH
Q 011979 410 LLFS--SSSELADQLL---MLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPL 463 (473)
Q Consensus 410 ~~~~--~~~~la~~i~---~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~ 463 (473)
++++ |++++++.+. .+.+. .+.+..|++++++.. ++|+|+...+++.+-+
T Consensus 518 ~LVp~~D~~aLa~ai~lA~aL~~l----l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 518 FILDDAQTVNLDQACRYAEKLVNL----WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred EEECCCChhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 9996 5777777763 33332 445567889998876 6799998888866544
No 55
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=252.49 Aligned_cols=244 Identities=15% Similarity=0.182 Sum_probs=183.2
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCe--EEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSA--FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~--~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 176 (473)
..+||+||++.+. ....+.++++..+.| ++...|... ... ... ... ..+.+|.++++|+.
T Consensus 82 ~~~~Dii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~-~~~----~~~--~~~~~d~~i~~S~~ 143 (359)
T PRK09922 82 ETQPDIVICIDVI---SCLYANKARKKSGKQFKIFSWPHFSL--------DHK-KHA----ECK--KITCADYHLAISSG 143 (359)
T ss_pred hcCCCEEEEcCHH---HHHHHHHHHHHhCCCCeEEEEecCcc--------ccc-chh----hhh--hhhcCCEEEEcCHH
Confidence 3789999999842 222355555554444 455555431 111 000 111 12689999999999
Q ss_pred HHHHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccc
Q 011979 177 MQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (473)
Q Consensus 177 ~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
+++.+.+ +|.+ +.++||+.+ +.+.... .
T Consensus 144 ~~~~~~~-~~~~~~ki~vi~N~id~~~~~~~~-----------------------------------------------~ 175 (359)
T PRK09922 144 IKEQMMA-RGISAQRISVIYNPVEIKTIIIPP-----------------------------------------------P 175 (359)
T ss_pred HHHHHHH-cCCCHHHEEEEcCCCCHHHccCCC-----------------------------------------------c
Confidence 9999986 4653 789999854 2221110 0
Q ss_pred cCCCCCeEEEEEeecc--CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHH
Q 011979 253 LKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 330 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 330 (473)
..+.+..++|+||+. ..||++.+++|+..+. ++++|+|+|+|++.+.
T Consensus 176 -~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------------------------------~~~~l~ivG~g~~~~~ 224 (359)
T PRK09922 176 -ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------------------------------GEWQLHIIGDGSDFEK 224 (359)
T ss_pred -ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC------------------------------CCeEEEEEeCCccHHH
Confidence 011233899999986 4599999999998762 4799999999999999
Q ss_pred HHHHHHHcCC-CcEEEecCCCC--cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCccccceecC
Q 011979 331 YEEKIRRLRL-KRVAFRTMWLS--AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVD 406 (473)
Q Consensus 331 l~~~~~~~~l-~~V~~~g~~v~--~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~~e~i~~~ 406 (473)
+++.++++++ ++|.|+|. ++ .+++..+|+.+|++|+ +|..|+||++++||||||+|||+++ .++..|++.++
T Consensus 225 l~~~~~~~~l~~~v~f~G~-~~~~~~~~~~~~~~~d~~v~---~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~ 300 (359)
T PRK09922 225 CKAYSRELGIEQRIIWHGW-QSQPWEVVQQKIKNVSALLL---TSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPG 300 (359)
T ss_pred HHHHHHHcCCCCeEEEecc-cCCcHHHHHHHHhcCcEEEE---CCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCC
Confidence 9999999999 79999997 53 4789999999999999 6888999999999999999999999 89999999999
Q ss_pred CceEEeC--CHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHhc
Q 011979 407 KNGLLFS--SSSELADQLLMLFKGFPDDSD--VLKKLRNGTLEMG 447 (473)
Q Consensus 407 ~~G~~~~--~~~~la~~i~~l~~~~~~~~~--~~~~~~~~~~~~~ 447 (473)
.+|++++ |+++++++|.+++++ ++ ....++++++++.
T Consensus 301 ~~G~lv~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~ 341 (359)
T PRK09922 301 LNGELYTPGNIDEFVGKLNKVISG----EVKYQHDAIPNSIERFY 341 (359)
T ss_pred CceEEECCCCHHHHHHHHHHHHhC----cccCCHHHHHHHHHHhh
Confidence 9999985 799999999999996 44 3455666666644
No 56
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=6.4e-28 Score=244.26 Aligned_cols=278 Identities=17% Similarity=0.184 Sum_probs=200.9
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhh-CCCeEEEEecCchhhhhhhhc-----------------CCC---chHHHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSL-----------------GRR---SHFVSIYRW 158 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~-----------------~~~---~~~~~~~~~ 158 (473)
.++|+||+|.+...... ...+.+. +++|+|+++|+.+........ ... .......+.
T Consensus 50 ~~~diih~~~~~~~~~~--~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (365)
T cd03825 50 INADIVHLHWIHGGFLS--IEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRR 127 (365)
T ss_pred ccCCEEEEEccccCccC--HHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHH
Confidence 78999999885443222 2222222 589999999987421110000 000 111223333
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHHhC---CceEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 159 IEKYYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 159 ~e~~~~~~ad~vi~vS~~~~~~l~~~~g---~~~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+...++.++++|+.+++.+.+.++ .++.+++|+. .+.|.+... ...+..++
T Consensus 128 ~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~---~~~~~~~~------------------ 186 (365)
T cd03825 128 KRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK---REARKRLG------------------ 186 (365)
T ss_pred HHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH---HHHHHHhC------------------
Confidence 3444445678999999999999887653 3489999994 455555432 22232222
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccC--CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccc
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 312 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (473)
.+++.+ +++++|+... .||++.+++|+..+.++
T Consensus 187 ------------------~~~~~~-~i~~~~~~~~~~~K~~~~ll~a~~~l~~~-------------------------- 221 (365)
T cd03825 187 ------------------LPADKK-IILFGAVGGTDPRKGFDELIEALKRLAER-------------------------- 221 (365)
T ss_pred ------------------CCCCCe-EEEEEecCCCccccCHHHHHHHHHHhhhc--------------------------
Confidence 223333 6666666655 89999999999988651
Q ss_pred cCCCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCC-cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCc
Q 011979 313 LYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLS-AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 390 (473)
Q Consensus 313 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~-~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~P 390 (473)
..++++++++|.++..... ++ .+|.++|. ++ .+++..+|+.||++++ ||..|++|++++|||+||+|
T Consensus 222 ~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~-~~~~~~~~~~~~~ad~~l~---ps~~e~~g~~~~Eam~~g~P 290 (365)
T cd03825 222 WKDDIELVVFGASDPEIPP-------DLPFPVHYLGS-LNDDESLALIYSAADVFVV---PSLQENFPNTAIEALACGTP 290 (365)
T ss_pred cCCCeEEEEeCCCchhhhc-------cCCCceEecCC-cCCHHHHHHHHHhCCEEEe---ccccccccHHHHHHHhcCCC
Confidence 1478999999998753321 33 68999998 77 8899999999999999 68789999999999999999
Q ss_pred EEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011979 391 VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 460 (473)
Q Consensus 391 vI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 460 (473)
||+++.+++.|++.++.+|++++ |+++++++|.+++++ ++.+.++++++++.. +.++|+...+++.
T Consensus 291 vI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 359 (365)
T cd03825 291 VVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD----PDEREELGEAARELAENEFDSRVQAKRYL 359 (365)
T ss_pred EEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999998999986 799999999999985 888999999999876 5688887776644
No 57
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=1.5e-28 Score=250.15 Aligned_cols=252 Identities=17% Similarity=0.175 Sum_probs=190.1
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchh-------hhhhhhcCC-C----chHHHHHHHHHHHHhhc
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGY-------TLLSLSLGR-R----SHFVSIYRWIEKYYGKM 166 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------~~~~~~~~~-~----~~~~~~~~~~e~~~~~~ 166 (473)
..++|+|++++++.. ..+....+.|.++.+|.... .... ..+. . ......++.+++...+.
T Consensus 81 ~~~~D~v~~~~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (351)
T cd03804 81 LSGYDLVISSSHAVA------KGVITRPDQLHICYCHTPMRYAWDLYHDYLK-ESGLGKRLALRLLLHYLRIWDRRSAAR 153 (351)
T ss_pred ccCCCEEEEcCcHHh------ccccCCCCCcEEEEeCCchHHHhcCchHhhh-hcccchhhHHHHHHHHHHHHHHHHhcC
Confidence 378999998874211 11124567888888886421 1110 0010 1 11234456667777889
Q ss_pred CCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhc
Q 011979 167 ANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTS 245 (473)
Q Consensus 167 ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (473)
+|.++++|+.+++.+.+.++.+..+++|+.+ +.|.+..
T Consensus 154 ~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~----------------------------------------- 192 (351)
T cd03804 154 VDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE----------------------------------------- 192 (351)
T ss_pred CCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------------------------------------
Confidence 9999999999999998888888888988743 3332210
Q ss_pred ccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC
Q 011979 246 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 325 (473)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 325 (473)
...+ .++|+|++.+.||++.+++|+..+ + ++|+|+|+|
T Consensus 193 ---------~~~~-~il~~G~~~~~K~~~~li~a~~~~-------------------------------~-~~l~ivG~g 230 (351)
T cd03804 193 ---------EKED-YYLSVGRLVPYKRIDLAIEAFNKL-------------------------------G-KRLVVIGDG 230 (351)
T ss_pred ---------CCCC-EEEEEEcCccccChHHHHHHHHHC-------------------------------C-CcEEEEECC
Confidence 1122 789999999999999999999864 4 789999999
Q ss_pred CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceec
Q 011979 326 PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV 405 (473)
Q Consensus 326 ~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~ 405 (473)
+..+.+++ ...++|.|+|+ ++.+++..+|+.||++++ ||. |++|++++||||||+|||+++.++..|++.+
T Consensus 231 ~~~~~l~~----~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~---ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~ 301 (351)
T cd03804 231 PELDRLRA----KAGPNVTFLGR-VSDEELRDLYARARAFLF---PAE-EDFGIVPVEAMASGTPVIAYGKGGALETVID 301 (351)
T ss_pred hhHHHHHh----hcCCCEEEecC-CCHHHHHHHHHhCCEEEE---CCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC
Confidence 87666665 12279999998 999999999999999999 577 9999999999999999999999999999999
Q ss_pred CCceEEeC--CHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhccccchHHHHH
Q 011979 406 DKNGLLFS--SSSELADQLLMLFKGFPDDS-DVLKKLRNGTLEMGLSARWATEWE 457 (473)
Q Consensus 406 ~~~G~~~~--~~~~la~~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~ 457 (473)
+.+|++++ |+++++++|..++++ + ..++.+++++. +++|++.-+
T Consensus 302 ~~~G~~~~~~~~~~la~~i~~l~~~----~~~~~~~~~~~~~----~~~~~~~~~ 348 (351)
T cd03804 302 GVTGILFEEQTVESLAAAVERFEKN----EDFDPQAIRAHAE----RFSESRFRE 348 (351)
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHhC----cccCHHHHHHHHH----hcCHHHHHH
Confidence 99999985 699999999999986 4 45566666665 466665433
No 58
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=2.8e-28 Score=253.45 Aligned_cols=344 Identities=15% Similarity=0.134 Sum_probs=225.4
Q ss_pred cCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCccccc-----CCCEEEEEeecCCCCCCCCcchhHHHHHH------
Q 011979 13 GDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILE-----HPSIHIHTMTQWPTIPRGLPKVLKPVLLL------ 81 (473)
Q Consensus 13 ~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~------ 81 (473)
.+-|+.-|+.+.+..|++. |+|+++|...+........ .+.+.+...+ +. ....+.+..+
T Consensus 12 ~~~G~~~r~~~~~~~L~~~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-----~~~~~~~~~l~~~~p~ 82 (397)
T TIGR03087 12 PNKGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLD--PR-----VARLRSLLGLLTGEPL 82 (397)
T ss_pred CCCCCcEeHHHHHHHHHhc--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecC--cH-----HHHHHHHhhhcCCCCC
Confidence 3457888999999999875 9999999865332111100 1233332222 00 0000000000
Q ss_pred -HHH--HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHH-hhCCCeEEEEecCchhhhhhhhcC----CCchHH
Q 011979 82 -LKP--LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLG----RRSHFV 153 (473)
Q Consensus 82 -~~~--~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~----~~~~~~ 153 (473)
... -.++...+..++ +..++|+||++++... ..+. ...++|+|++.|+........... ..+.+.
T Consensus 83 ~~~~~~~~~~~~~l~~~~-~~~~~D~v~~~~~~~~------~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~ 155 (397)
T TIGR03087 83 SLPYYRSRRLARWVNALL-AAEPVDAIVVFSSAMA------QYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIY 155 (397)
T ss_pred cchhhCCHHHHHHHHHHH-hhCCCCEEEEeccccc------eeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHH
Confidence 000 011111222223 2378999999984322 1222 356789999999864222111111 111111
Q ss_pred ----HHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhC---CceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCc
Q 011979 154 ----SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGV 225 (473)
Q Consensus 154 ----~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g---~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~ 225 (473)
+.+.++|+.+.+.+|.++++|+..++.+.+..+ .++.+++||.+ +.|.+..... .
T Consensus 156 ~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~-~---------------- 218 (397)
T TIGR03087 156 RREGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP-N---------------- 218 (397)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc-C----------------
Confidence 234567898999999999999999999987543 24789999944 5565432100 0
Q ss_pred ccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHH----HHhHHHHHhhhccCCCchhhH
Q 011979 226 QDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAA----LMYDRRVAAILNEDDSTNEEV 301 (473)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~----~~l~~~~~~~~~~~~~~~~~~ 301 (473)
...++.+ .++|+|++...||++.++.++ ..+.+
T Consensus 219 --------------------------~~~~~~~-~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---------------- 255 (397)
T TIGR03087 219 --------------------------PYPPGKR-VLVFTGAMDYWPNIDAVVWFAERVFPAVRA---------------- 255 (397)
T ss_pred --------------------------CCCCCCc-EEEEEEecCCccCHHHHHHHHHHHHHHHHH----------------
Confidence 1122233 899999999999999988544 44443
Q ss_pred HHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcH
Q 011979 302 FLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPM 379 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~ 379 (473)
..|+++|+|+|+|+.. . +++++. ++|.|+|. ++ ++..+|+.||++|+| | .++++|+
T Consensus 256 -----------~~p~~~l~ivG~g~~~-~----~~~l~~~~~V~~~G~-v~--~~~~~~~~adv~v~P---s~~~eG~~~ 313 (397)
T TIGR03087 256 -----------RRPAAEFYIVGAKPSP-A----VRALAALPGVTVTGS-VA--DVRPYLAHAAVAVAP---LRIARGIQN 313 (397)
T ss_pred -----------HCCCcEEEEECCCChH-H----HHHhccCCCeEEeee-cC--CHHHHHHhCCEEEec---ccccCCccc
Confidence 2589999999999853 2 333433 68999998 54 899999999999994 5 4688999
Q ss_pred HHHHHHhcCCcEEEeccCccccceecCCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHH
Q 011979 380 KVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 457 (473)
Q Consensus 380 kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 457 (473)
+++||||||+|||+|+.++ ..+...+++|+++. |+++++++|.+++++ ++.+++|++++++.. ++|+|+...+
T Consensus 314 ~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~lv~~~~~~la~ai~~ll~~----~~~~~~~~~~ar~~v~~~fsw~~~~~ 388 (397)
T TIGR03087 314 KVLEAMAMAKPVVASPEAA-EGIDALPGAELLVAADPADFAAAILALLAN----PAEREELGQAARRRVLQHYHWPRNLA 388 (397)
T ss_pred HHHHHHHcCCCEEecCccc-ccccccCCcceEeCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998653 33334456788875 899999999999985 889999999999876 6799987766
Q ss_pred HH
Q 011979 458 EH 459 (473)
Q Consensus 458 ~~ 459 (473)
+.
T Consensus 389 ~~ 390 (397)
T TIGR03087 389 RL 390 (397)
T ss_pred HH
Confidence 63
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=3.1e-28 Score=260.04 Aligned_cols=270 Identities=13% Similarity=0.212 Sum_probs=208.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCch-HHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.++|++|++.|+... ..+......+|+++.+|+-++... ....... +...+..... ..+.+|.+|++|+..+
T Consensus 210 ~~~di~i~dr~~~~~----~~~~~~~~~~~~v~~lH~~h~~~~--~~~~~~~~~~~~y~~~~~-~~~~~D~iI~~S~~~~ 282 (500)
T TIGR02918 210 TKKDIIILDRSTGIG----QAVLENKGPAKLGVVVHAEHFSES--ATNETYILWNNYYEYQFS-NADYIDFFITATDIQN 282 (500)
T ss_pred CCCCEEEEcCCcccc----hHHHhcCCCceEEEEEChhhhcCc--cCcchhHHHHHHHHHHHh-chhhCCEEEECCHHHH
Confidence 689999998865422 113344567999999998643111 0111111 1222222222 2456899999999999
Q ss_pred HHHHHHhC------CceEEeeCCCCC-CcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 179 HELAQNWG------IKATVLYDQPPE-FFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 179 ~~l~~~~g------~~~~vi~n~~~~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+.+.+.++ .++.++|+|..+ .+.+.
T Consensus 283 ~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------------------------------------------ 314 (500)
T TIGR02918 283 QILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------------------------------------------ 314 (500)
T ss_pred HHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------------------------------------------
Confidence 88876553 237888888432 22111
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
...++..++++||+.+.||++.|++|+..+.+ ..|+++|.|+|+|+..+.+
T Consensus 315 --~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~---------------------------~~p~~~l~i~G~G~~~~~l 365 (500)
T TIGR02918 315 --QERKPFSIITASRLAKEKHIDWLVKAVVKAKK---------------------------SVPELTFDIYGEGGEKQKL 365 (500)
T ss_pred --cccCCeEEEEEeccccccCHHHHHHHHHHHHh---------------------------hCCCeEEEEEECchhHHHH
Confidence 01133489999999999999999999999887 3789999999999998999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC-ccccceecCCce
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNG 409 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~-~~~e~i~~~~~G 409 (473)
+++++++++ ++|.|+|. .++..+|+.||++|+ ||..|+||++++||||||+|||+++.+ |.+|+|.++.+|
T Consensus 366 ~~~i~~~~l~~~V~f~G~----~~~~~~~~~adv~v~---pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG 438 (500)
T TIGR02918 366 QKIINENQAQDYIHLKGH----RNLSEVYKDYELYLS---ASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNG 438 (500)
T ss_pred HHHHHHcCCCCeEEEcCC----CCHHHHHHhCCEEEE---cCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCE
Confidence 999999998 79999996 378999999999999 788999999999999999999999985 899999999999
Q ss_pred EEeC-C---------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011979 410 LLFS-S---------SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 466 (473)
Q Consensus 410 ~~~~-~---------~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 466 (473)
++++ + ++++|++|.++++ ++.+.+|++++++.++.++|+..|++.. .++++
T Consensus 439 ~lv~~~~~~~d~~~~~~~la~~I~~ll~-----~~~~~~~~~~a~~~a~~fs~~~v~~~w~-~ll~~ 499 (500)
T TIGR02918 439 YLIPIDEEEDDEDQIITALAEKIVEYFN-----SNDIDAFHEYSYQIAEGFLTANIIEKWK-KLVRE 499 (500)
T ss_pred EEEeCCccccchhHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 9986 1 8899999999985 3468999999999889999998888754 45444
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.97 E-value=5.2e-28 Score=252.71 Aligned_cols=266 Identities=18% Similarity=0.202 Sum_probs=203.8
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCC-CeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.++|++|.+- ..+......+++.... .++|++.|+... . .... ...+..+.+.+.+.+|.++++|+..+
T Consensus 126 ~~~~v~~sy~--~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~--~-----~~~~-~~~~~~~~~~~~~~~d~ii~~S~~~~ 195 (407)
T cd04946 126 GQGTVFYSYW--LHETAYALALLKKEYLRKRVISRAHGYDL--Y-----EDRY-PSGYIPLRRYLLSSLDAVFPCSEQGR 195 (407)
T ss_pred cCceEEEEec--CchHHHHHHHHHHhcCCceEEEEeccchh--h-----hhhc-cccchHHHHHHHhcCCEEEECCHHHH
Confidence 3445665543 2333322333344333 459999997631 1 1000 01112344556778999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 179 HELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++.+.++.. +.++++|.+ ..+.+. ..
T Consensus 196 ~~l~~~~~~~~~ki~vi~~gv~~~~~~~~-------------------------------------------------~~ 226 (407)
T cd04946 196 NYLQKRYPAYKEKIKVSYLGVSDPGIISK-------------------------------------------------PS 226 (407)
T ss_pred HHHHHHCCCccccEEEEECCcccccccCC-------------------------------------------------CC
Confidence 9999887753 678888843 222111 01
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCC--CEEEEEEcCCCChHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP--RLLFIITGKGPDKESYE 332 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ivG~g~~~~~l~ 332 (473)
.+.+..++++|++.+.||++.+++|+..+.++ .| +++++++|+|+..+.++
T Consensus 227 ~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~~~iiG~g~~~~~l~ 279 (407)
T cd04946 227 KDDTLRIVSCSYLVPVKRVDLIIKALAALAKA---------------------------RPSIKIKWTHIGGGPLEDTLK 279 (407)
T ss_pred CCCCEEEEEeeccccccCHHHHHHHHHHHHHh---------------------------CCCceEEEEEEeCchHHHHHH
Confidence 12344899999999999999999999999773 33 57789999999999999
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCce
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 409 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G 409 (473)
+++++++. ++|.|+|. ++.+++..+|+. +|++++ +|..|++|++++||||||+|||+|+.+|..|++.++.+|
T Consensus 280 ~~~~~~~~~~~V~f~G~-v~~~e~~~~~~~~~~~v~v~---~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G 355 (407)
T cd04946 280 ELAESKPENISVNFTGE-LSNSEVYKLYKENPVDVFVN---LSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNG 355 (407)
T ss_pred HHHHhcCCCceEEEecC-CChHHHHHHHhhcCCCEEEe---CCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcE
Confidence 99988777 68999998 999999999986 678887 788999999999999999999999999999999999899
Q ss_pred EEeC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011979 410 LLFS---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 459 (473)
Q Consensus 410 ~~~~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 459 (473)
++++ |+++++++|.+++++ ++.+++|+++|++.. ++|+|+...++.
T Consensus 356 ~l~~~~~~~~~la~~I~~ll~~----~~~~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 356 LLLSKDPTPNELVSSLSKFIDN----EEEYQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred EEeCCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 9884 589999999999984 899999999999987 779988877664
No 61
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=2.2e-27 Score=247.87 Aligned_cols=350 Identities=11% Similarity=0.039 Sum_probs=216.4
Q ss_pred CCeEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCCcccccCCCE-EEEEeecCCCCCCCCcchhHHH---
Q 011979 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSI-HIHTMTQWPTIPRGLPKVLKPV--- 78 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~-a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~~--- 78 (473)
||+++|.....+|+++|+... +..+.++ ||+|.++...+..+.... ...++ .+.... ..........
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 72 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYGKGGKESV-SHQNYPQVIKHT------PRMTAMANIALFR 72 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecCCCccccc-ccCCcceEEEec------ccHHHHHHHHHHH
Confidence 688888878789999999865 4556665 999999987755433211 11222 122222 1111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCch--hHHHHHHH----HHhhCCCeEEEEecCchhhh--------
Q 011979 79 ---LLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSV--PTLVAVKW----ASSLRRSAFIVDWHNFGYTL-------- 141 (473)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~--~~~~~~~~----~~~~~~~~~i~~~h~~~~~~-------- 141 (473)
......... +..++.+..+||+||.|+.... ....+..+ ..+..++|+|+|.||+|.--
T Consensus 73 ~~~~~~~~~~~~----~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~ 148 (405)
T PRK10125 73 LFNRDLFGNFNE----LYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDG 148 (405)
T ss_pred hcchhhcchHHH----HHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcc
Confidence 000011111 1122223479999999985532 11111221 12245789999999997210
Q ss_pred ---hhhhc--------CCCchH---HHHH---HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCC-ceEEeeCCCC-CCccc
Q 011979 142 ---LSLSL--------GRRSHF---VSIY---RWIEKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPP-EFFHP 202 (473)
Q Consensus 142 ---~~~~~--------~~~~~~---~~~~---~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~-~~~vi~n~~~-~~f~~ 202 (473)
..... .+.... .+.+ +..-+...+.++.++++|+.+++.+.+.++. ++.+|+||.+ +.+.+
T Consensus 149 C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~ 228 (405)
T PRK10125 149 CEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAI 228 (405)
T ss_pred cccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccc
Confidence 00000 111111 1111 1112222345689999999999998876664 4899999954 22211
Q ss_pred CChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeec--cCCCCHHHHHHHH
Q 011979 203 TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILLEAA 280 (473)
Q Consensus 203 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~K~~~~li~a~ 280 (473)
... .... ..+++++ .++++|+. .+.||++.+++|+
T Consensus 229 ~~~--~~~~----------------------------------------~~~~~~~-~il~v~~~~~~~~Kg~~~li~A~ 265 (405)
T PRK10125 229 LAE--LPPV----------------------------------------RETQGKP-KIAVVAHDLRYDGKTDQQLVREM 265 (405)
T ss_pred ccc--cccc----------------------------------------ccCCCCC-EEEEEEeccccCCccHHHHHHHH
Confidence 110 0000 1122333 78889983 4679999999999
Q ss_pred HHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh
Q 011979 281 LMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG 360 (473)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~ 360 (473)
..+ .++++|+|+|+|+... .++|.++|..-+.+++..+|+
T Consensus 266 ~~l------------------------------~~~~~L~ivG~g~~~~----------~~~v~~~g~~~~~~~l~~~y~ 305 (405)
T PRK10125 266 MAL------------------------------GDKIELHTFGKFSPFT----------AGNVVNHGFETDKRKLMSALN 305 (405)
T ss_pred HhC------------------------------CCCeEEEEEcCCCccc----------ccceEEecCcCCHHHHHHHHH
Confidence 876 3579999999885321 146888887336789999999
Q ss_pred cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHH
Q 011979 361 SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKK 438 (473)
Q Consensus 361 ~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~ 438 (473)
+||++|+ ||..|+||++++||||||+|||+|+.||++|++.+. +|++++ |+++|++.+. ++.+++
T Consensus 306 ~aDvfV~---pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~~---------~~~~~~ 372 (405)
T PRK10125 306 QMDALVF---SSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLSK---------PEIAQA 372 (405)
T ss_pred hCCEEEE---CCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhccC---------HHHHHH
Confidence 9999999 788999999999999999999999999999999765 899996 7999998543 222222
Q ss_pred ----HHHHHHHhc-cccchHHHHHHHHH
Q 011979 439 ----LRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 439 ----~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
+.+.+++.. +.|+|+...+++.+
T Consensus 373 ~~~~~~~~~r~~~~~~fs~~~~~~~y~~ 400 (405)
T PRK10125 373 VFGTTLAEFSQRSRAAYSGQQMLEEYVN 400 (405)
T ss_pred hhhhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 122344332 57999888888654
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=1.3e-26 Score=247.47 Aligned_cols=350 Identities=11% Similarity=0.076 Sum_probs=229.3
Q ss_pred CCeEEEEEecCC----CCChhHHHHHHHHHhhCCCcEEEEecCCCCCCccccc--------------------------C
Q 011979 4 RGRACVVVLGDL----GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILE--------------------------H 53 (473)
Q Consensus 4 ~~~~~i~~~~~~----g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~--------------------------~ 53 (473)
.+.+.|+.+..+ |.+---...|..|++..+++|+++-+--....++... .
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 355777777543 5666666778888886578999988442211111111 2
Q ss_pred CCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEE
Q 011979 54 PSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD 133 (473)
Q Consensus 54 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~ 133 (473)
.+..+..+|.... ...+. ....-.+.+.+ ...+||+||+.+|..+.....+..++...+ |+|..
T Consensus 402 ~~~~i~fYpg~~~--~~~~S-I~p~gdI~~~L------------~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVas 465 (794)
T PLN02501 402 ADFKISFYPGKFS--KERRS-IIPAGDTSQFI------------PSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGV 465 (794)
T ss_pred CCceEEeecchhc--cCCcc-ccchHHHHHHh------------hccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEE
Confidence 3444444442110 00111 11111222222 237899999999865433211444555555 89989
Q ss_pred ecCchhhhhhhhcCCCchHHH-HHHHHHHHHhhc-CCEEEEcCHHHHHHHHHHhCCceEEeeCC-CCCCcccCChhHHHH
Q 011979 134 WHNFGYTLLSLSLGRRSHFVS-IYRWIEKYYGKM-ANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHE 210 (473)
Q Consensus 134 ~h~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~-ad~vi~vS~~~~~~l~~~~g~~~~vi~n~-~~~~f~~~~~~~~~~ 210 (473)
+|.....+... . ....+.. +.+++.+++.+. +|.++++|..+++ +. .......+| ++++|+|.....
T Consensus 466 yHTny~eYl~~-y-~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L~----~~vI~nVnGVDte~F~P~~r~~--- 535 (794)
T PLN02501 466 VHTNYLEYIKR-E-KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-LP----KSVICNVHGVNPKFLKIGEKVA--- 535 (794)
T ss_pred EeCCcHHHHhH-h-cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-hc----ccceeecccccccccCCcchhH---
Confidence 99874332221 1 2223332 233444444443 8999999988883 32 111111257 557887764311
Q ss_pred HHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhh
Q 011979 211 LFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAI 290 (473)
Q Consensus 211 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~ 290 (473)
-+..++ .....+ .++|+||+.+.||++.|++|+..+.+
T Consensus 536 ~~r~lg------------------------------------i~~~~k-giLfVGRLa~EKGld~LLeAla~L~~----- 573 (794)
T PLN02501 536 EERELG------------------------------------QQAFSK-GAYFLGKMVWAKGYRELIDLLAKHKN----- 573 (794)
T ss_pred HHHhcC------------------------------------CccccC-ceEEEEcccccCCHHHHHHHHHHHHh-----
Confidence 112222 111112 58899999999999999999999876
Q ss_pred hccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEecc
Q 011979 291 LNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT 370 (473)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~ 370 (473)
..|+++|+|+|+||..+.++++++++++ +|.|+|+ .++...+|+.+|++|+
T Consensus 574 ----------------------~~pnvrLvIVGDGP~reeLe~la~eLgL-~V~FLG~---~dd~~~lyasaDVFVl--- 624 (794)
T PLN02501 574 ----------------------ELDGFNLDVFGNGEDAHEVQRAAKRLDL-NLNFLKG---RDHADDSLHGYKVFIN--- 624 (794)
T ss_pred ----------------------hCCCeEEEEEcCCccHHHHHHHHHHcCC-EEEecCC---CCCHHHHHHhCCEEEE---
Confidence 2578999999999999999999999987 5899998 6778899999999999
Q ss_pred CCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccc
Q 011979 371 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 450 (473)
Q Consensus 371 ~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
||..|+||++++||||||+|||+++.++.. ++.++.+|++++|.++++++|.+++.+ +..+..+++ ...+
T Consensus 625 PS~sEgFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~~D~EafAeAI~~LLsd----~~~rl~~~a-----~~~~ 694 (794)
T PLN02501 625 PSISDVLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTYKTSEDFVAKVKEALAN----EPQPLTPEQ-----RYNL 694 (794)
T ss_pred CCCcccchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEecCCHHHHHHHHHHHHhC----chhhhHHHH-----HhhC
Confidence 788999999999999999999999998854 477888999999999999999999986 333322222 2267
Q ss_pred chHHHHHHHH
Q 011979 451 RWATEWEEHA 460 (473)
Q Consensus 451 ~w~~~~~~~~ 460 (473)
+|+...++.+
T Consensus 695 SWeAaadrLl 704 (794)
T PLN02501 695 SWEAATQRFM 704 (794)
T ss_pred CHHHHHHHHH
Confidence 8876666543
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=7.7e-27 Score=239.27 Aligned_cols=267 Identities=18% Similarity=0.300 Sum_probs=208.9
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.++|+++++.+..... .+.......+.++.+|+....... ......+...++..... .+.+|.++++|+..++
T Consensus 98 ~~~diii~~~~~~~~~----~~~~~~~~~~~i~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~d~ii~~s~~~~~ 170 (372)
T cd04949 98 TKPDVFILDRPTLDGQ----ALLNMKKAAKVVVVLHSNHVSDNN--DPVHSLINNFYEYVFEN-LDKVDGVIVATEQQKQ 170 (372)
T ss_pred CCCCEEEECCccccch----hHHhccCCceEEEEEChHHhCCcc--cccccccchhhHHHHhC-hhhCCEEEEccHHHHH
Confidence 7899999988654332 123334556788899976421110 00012222333333222 3578999999999999
Q ss_pred HHHHHhCCc--eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC
Q 011979 180 ELAQNWGIK--ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (473)
Q Consensus 180 ~l~~~~g~~--~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
.+.+.++.. +.++|++.. ..+.+.. ....
T Consensus 171 ~l~~~~~~~~~v~~ip~g~~~~~~~~~~------------------------------------------------~~~~ 202 (372)
T cd04949 171 DLQKQFGNYNPIYTIPVGSIDPLKLPAQ------------------------------------------------FKQR 202 (372)
T ss_pred HHHHHhCCCCceEEEcccccChhhcccc------------------------------------------------hhhc
Confidence 998877654 678888844 2222210 0111
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~ 336 (473)
.+..++++|++.+.||++.+++|+..+.++ .|+++|+|+|.|+....+++.++
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~~~~~~~ 255 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQ---------------------------VPDATLDIYGYGDEEEKLKELIE 255 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHh---------------------------CCCcEEEEEEeCchHHHHHHHHH
Confidence 233899999999999999999999999873 78999999999998888999999
Q ss_pred HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC-ccccceecCCceEEeC-
Q 011979 337 RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNGLLFS- 413 (473)
Q Consensus 337 ~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~-~~~e~i~~~~~G~~~~- 413 (473)
++++ ++|.|.|+ .+++..+|+.||++|+ +|..|++|++++|||+||+|||+++.+ |..+++.++.+|++++
T Consensus 256 ~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~ 329 (372)
T cd04949 256 ELGLEDYVFLKGY---TRDLDEVYQKAQLSLL---TSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPK 329 (372)
T ss_pred HcCCcceEEEcCC---CCCHHHHHhhhhEEEe---cccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCC
Confidence 9998 79999996 7899999999999999 688899999999999999999999976 8899999999999997
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 458 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 458 (473)
|+++++++|.+++++ ++.+++|++++++..++|+|++.+++
T Consensus 330 ~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 330 GDIEALAEAIIELLND----PKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred CcHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 899999999999995 88999999999998888999887764
No 64
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=228.41 Aligned_cols=329 Identities=17% Similarity=0.193 Sum_probs=227.5
Q ss_pred HHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCC---cchhHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 011979 26 LSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGL---PKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (473)
Q Consensus 26 ~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (473)
..|-+ +||.|.+++........-.....|++++.++... ..+- +.....+..+...+ .+ .+.
T Consensus 26 q~li~-lghkVvvithayg~r~girylt~glkVyylp~~v--~~n~tT~ptv~~~~Pllr~i~-----------lr-E~I 90 (426)
T KOG1111|consen 26 QCLIR-LGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVV--GYNQTTFPTVFSDFPLLRPIL-----------LR-ERI 90 (426)
T ss_pred cchhh-cCCeEEEEeccccCccceeeecCCceEEEEeeee--eecccchhhhhccCcccchhh-----------hh-hce
Confidence 44445 5999999995533221112234578888888321 1111 11111122222222 12 578
Q ss_pred CEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHH
Q 011979 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELA 182 (473)
Q Consensus 103 Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~ 182 (473)
.+||.|++.+...- -+...++..+.+.+++-|.+ | .+..-+ ......+-++.....|.+||+|-..++...
T Consensus 91 ~ivhghs~fS~lah-e~l~hartMGlktVfTdHSl-f-----Gfad~~--si~~n~ll~~sL~~id~~IcVshtskentv 161 (426)
T KOG1111|consen 91 EIVHGHSPFSYLAH-EALMHARTMGLKTVFTDHSL-F-----GFADIG--SILTNKLLPLSLANIDRIICVSHTSKENTV 161 (426)
T ss_pred EEEecCChHHHHHH-HHHHHHHhcCceEEEecccc-c-----cccchh--hhhhcceeeeeecCCCcEEEEeecCCCceE
Confidence 88888886544332 24445556789999999987 2 111111 111112233344567999999987765432
Q ss_pred HHhCC---ceEEeeCC-CCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCC
Q 011979 183 QNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (473)
Q Consensus 183 ~~~g~---~~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (473)
-+... ++.+|||. ..+.|.|.+.. .++.+
T Consensus 162 lr~~L~p~kvsvIPnAv~~~~f~P~~~~-----------------------------------------------~~S~~ 194 (426)
T KOG1111|consen 162 LRGALAPAKVSVIPNAVVTHTFTPDAAD-----------------------------------------------KPSAD 194 (426)
T ss_pred EEeccCHhHeeeccceeeccccccCccc-----------------------------------------------cCCCC
Confidence 11122 27899998 55778775321 11122
Q ss_pred -eEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHH
Q 011979 259 -ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 337 (473)
Q Consensus 259 -~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~ 337 (473)
..++.++|+..+||+|.|++++..+.+ +.|+++|+|+|+||.+..+++..++
T Consensus 195 i~~ivv~sRLvyrKGiDll~~iIp~vc~---------------------------~~p~vrfii~GDGPk~i~lee~lEk 247 (426)
T KOG1111|consen 195 IITIVVASRLVYRKGIDLLLEIIPSVCD---------------------------KHPEVRFIIIGDGPKRIDLEEMLEK 247 (426)
T ss_pred eeEEEEEeeeeeccchHHHHHHHHHHHh---------------------------cCCCeeEEEecCCcccchHHHHHHH
Confidence 488999999999999999999999998 5899999999999999999999999
Q ss_pred cCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC-CH
Q 011979 338 LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SS 415 (473)
Q Consensus 338 ~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~-~~ 415 (473)
+.+ ++|.++|. ++++++.+.|.+-|++++ +|..|.|+++++|||+||+||+++.+||++|++-++ .-+..+ ++
T Consensus 248 ~~l~~rV~~lG~-v~h~~Vr~vl~~G~IFln---tSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~~ 322 (426)
T KOG1111|consen 248 LFLQDRVVMLGT-VPHDRVRDVLVRGDIFLN---TSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPGP 322 (426)
T ss_pred hhccCceEEecc-cchHHHHHHHhcCcEEec---cHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCCh
Confidence 999 89999999 999999999999999999 899999999999999999999999999999998554 222333 68
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 416 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 416 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
+++++++++.+......| ..+.++..+ .|+|.+..+++-+..
T Consensus 323 ~dl~~~v~~ai~~~~~~p---~~~h~~v~~---~y~w~dVa~rTekvy 364 (426)
T KOG1111|consen 323 DDLVGAVEKAITKLRTLP---LEFHDRVKK---MYSWKDVAERTEKVY 364 (426)
T ss_pred HHHHHHHHHHHHHhccCc---hhHHHHHHH---hccHHHHHHHHHHHH
Confidence 999999988887533222 233344444 699999988865443
No 65
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.95 E-value=1.1e-24 Score=224.85 Aligned_cols=359 Identities=17% Similarity=0.132 Sum_probs=217.4
Q ss_pred CCCCCeEEEEEecCCC-CChhHHHHHHHHHhhCCCcEEEEecCCC--CCCcccccCCCEEEEEe-ecCCCCCCCC--cch
Q 011979 1 MGRRGRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS--KPHAAILEHPSIHIHTM-TQWPTIPRGL--PKV 74 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g-~s~r~~~~a~~L~~~~g~eV~vi~~~~~--~~~~~~~~~~~i~i~~~-~~~~~~~~~~--~~~ 74 (473)
|.+.+.++++...+|+ ...|-|..+..|+++ ||.|..+...+. .+.. ...+...+..- .......... .-.
T Consensus 1 ~~~~~~~~~~~~~~w~~~~~~~qhl~~~~a~~-~~~vl~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T cd04950 1 MADRPDILVFSADDWDFLWQRPQHLAARLAER-GNRVLYVEPPGLSRTPQP--RGRDWVRVVLRLRAALRRPRRLDPLIP 77 (373)
T ss_pred CCCCCeEEEecccCcCCCCCCHHHHHHHHHhC-CCeEEEEeCCCccCCCCC--CCcccEEeeecccccccCccccCcccc
Confidence 5556656655566776 478899999999976 999999986543 2221 22233333221 1000000000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHH
Q 011979 75 LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS 154 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~ 154 (473)
..........+... +.+... +....|.|+..++|.... ++....+.++||+++|.+.... +....
T Consensus 78 ~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~~~~~P~~~~-----~~~~~~~~~~Vyd~~D~~~~~~----~~~~~--- 142 (373)
T cd04950 78 ARRRRLLRLLLNAL--LFWAQL-ELGFGRPILWYYTPYTLP-----VAALLQASLVVYDCVDDLSAFP----GGPPE--- 142 (373)
T ss_pred chhhhHHHHHHHHH--HHHHHH-hcCCCCcEEEEeCccHHH-----HHhhcCCCeEEEEcccchhccC----CCCHH---
Confidence 01111111111110 111111 224445555444443322 2233677899999999743211 11111
Q ss_pred HHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCc
Q 011979 155 IYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGM 233 (473)
Q Consensus 155 ~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (473)
....|+.+.+.||.|+++|+.+++.+.+ ++.++.+++||.+ +.|.+....... . ..+
T Consensus 143 -~~~~e~~~~~~ad~vi~~S~~l~~~~~~-~~~~i~~i~ngvd~~~f~~~~~~~~~-~-~~~------------------ 200 (373)
T cd04950 143 -LLEAERRLLKRADLVFTTSPSLYEAKRR-LNPNVVLVPNGVDYEHFAAARDPPPP-P-ADL------------------ 200 (373)
T ss_pred -HHHHHHHHHHhCCEEEECCHHHHHHHhh-CCCCEEEcccccCHHHhhcccccCCC-h-hHH------------------
Confidence 1267888899999999999999988876 4667899999954 556443211000 0 000
Q ss_pred CCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc
Q 011979 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (473)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
...+++ .++|+|++.+.++++.+.++++.
T Consensus 201 -------------------~~~~~~-~i~y~G~l~~~~d~~ll~~la~~------------------------------- 229 (373)
T cd04950 201 -------------------AALPRP-VIGYYGAIAEWLDLELLEALAKA------------------------------- 229 (373)
T ss_pred -------------------hcCCCC-EEEEEeccccccCHHHHHHHHHH-------------------------------
Confidence 112233 89999999998888766554432
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~Pv 391 (473)
.|+++|+|+|.|+..... ....+.+||+|+|. ++.++++.+++.+|++++|...+ ...++|+|++||||||+||
T Consensus 230 ~p~~~~vliG~~~~~~~~---~~~~~~~nV~~~G~-~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PV 305 (373)
T cd04950 230 RPDWSFVLIGPVDVSIDP---SALLRLPNVHYLGP-KPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPV 305 (373)
T ss_pred CCCCEEEEECCCcCccCh---hHhccCCCEEEeCC-CCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCE
Confidence 478999999998332222 22223479999998 99999999999999999976554 3457899999999999999
Q ss_pred EEeccCccccceecCCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 392 CAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 392 I~~~~~~~~e~i~~~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
|+++.++. +.....+++.. |+++++++|.+++.+. ++....+..+ ..++++|++..++....+
T Consensus 306 Vat~~~~~---~~~~~~~~~~~~d~~~~~~ai~~~l~~~--~~~~~~~~~~----~~~~~sW~~~a~~~~~~l 369 (373)
T cd04950 306 VATPLPEV---RRYEDEVVLIADDPEEFVAAIEKALLED--GPARERRRLR----LAAQNSWDARAAEMLEAL 369 (373)
T ss_pred EecCcHHH---HhhcCcEEEeCCCHHHHHHHHHHHHhcC--CchHHHHHHH----HHHHCCHHHHHHHHHHHH
Confidence 99986544 33444455554 7999999999976541 1222222111 344789988888766444
No 66
>PHA01630 putative group 1 glycosyl transferase
Probab=99.94 E-value=7.4e-25 Score=222.84 Aligned_cols=233 Identities=11% Similarity=0.099 Sum_probs=176.3
Q ss_pred CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH-hhcCCEEEEcCHHHHHHHHHHh-CC--ceEEeeCCCC-CCc
Q 011979 126 RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY-GKMANGCLCVTQAMQHELAQNW-GI--KATVLYDQPP-EFF 200 (473)
Q Consensus 126 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ad~vi~vS~~~~~~l~~~~-g~--~~~vi~n~~~-~~f 200 (473)
.+.|+++++|+. + ++.+.++.++ .+.+|.++++|+.+++.+.+.. +. ++.++|||.+ +.|
T Consensus 68 ~~~~~v~e~~~~-~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 68 VGKNIVFEVADT-D--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred cCCceEEEEEee-c--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc
Confidence 467999999984 1 2223455666 6789999999999999997652 22 5789999944 455
Q ss_pred ccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHH
Q 011979 201 HPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAA 280 (473)
Q Consensus 201 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~ 280 (473)
.+... ....+.+++++|++.++||++.|++|+
T Consensus 133 ~~~~~------------------------------------------------~~~~~~vl~~~g~~~~~Kg~d~Li~A~ 164 (331)
T PHA01630 133 EYKPK------------------------------------------------EKPHPCVLAILPHSWDRKGGDIVVKIF 164 (331)
T ss_pred CCCcc------------------------------------------------ccCCCEEEEEeccccccCCHHHHHHHH
Confidence 43310 011344777888999999999999999
Q ss_pred HHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh
Q 011979 281 LMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG 360 (473)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~ 360 (473)
+.+.++ .++++++++|+++....+ .++.. +.|+ ++.+++..+|+
T Consensus 165 ~~l~~~---------------------------~~~~~llivG~~~~~~~l------~~~~~--~~~~-v~~~~l~~~y~ 208 (331)
T PHA01630 165 HELQNE---------------------------GYDFYFLIKSSNMLDPRL------FGLNG--VKTP-LPDDDIYSLFA 208 (331)
T ss_pred HHHHhh---------------------------CCCEEEEEEeCcccchhh------ccccc--eecc-CCHHHHHHHHH
Confidence 998772 578999999977543321 12222 3455 88999999999
Q ss_pred cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEe--------------------C-CHHHHH
Q 011979 361 SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--------------------S-SSSELA 419 (473)
Q Consensus 361 ~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~--------------------~-~~~~la 419 (473)
.||++|+ ||..|+||++++||||||+|||+|+.+|..|++.++.+|+++ + |.++++
T Consensus 209 ~aDv~v~---pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 209 GCDILFY---PVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred hCCEEEE---CCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 9999999 788899999999999999999999999999999998776664 3 678899
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 420 DQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 420 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
+++.+++.+.. +++.++.++++++...++|+|+...++..+
T Consensus 286 ~~ii~~l~~~~-~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~ 326 (331)
T PHA01630 286 QKLLEALANWT-PEKKKENLEGRAILYRENYSYNAIAKMWEK 326 (331)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999888511 145666777777777789999877666433
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.93 E-value=1.4e-23 Score=214.74 Aligned_cols=328 Identities=17% Similarity=0.148 Sum_probs=212.2
Q ss_pred CeEEEEEecCCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHH
Q 011979 5 GRACVVVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (473)
++++++..| .|+..+ +...+..|.++ ||+|++++...+. .....+..++++++++... ..+.. ....+....+
T Consensus 2 ~~i~i~~~g-~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~-~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGGG-TGGHVFPALALAEELKKR-GWEVLYLGTARGM-EARLVPKAGIEFHFIPSGG--LRRKG-SLANLKAPFK 75 (357)
T ss_pred cEEEEEcCc-chHhhhHHHHHHHHHHhC-CCEEEEEECCCch-hhhccccCCCcEEEEeccC--cCCCC-hHHHHHHHHH
Confidence 456666555 355444 34667777776 9999999975432 1223334689999888321 11111 1111111212
Q ss_pred HHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
.++... -++.++ +..+||+||++++.. . ..+.++++..++|+|++.|+... . ..+++.
T Consensus 76 ~~~~~~-~~~~~i-k~~~pDvv~~~~~~~--~-~~~~~~~~~~~~p~v~~~~~~~~----------~-------~~~r~~ 133 (357)
T PRK00726 76 LLKGVL-QARKIL-KRFKPDVVVGFGGYV--S-GPGGLAARLLGIPLVIHEQNAVP----------G-------LANKLL 133 (357)
T ss_pred HHHHHH-HHHHHH-HhcCCCEEEECCCcc--h-hHHHHHHHHcCCCEEEEcCCCCc----------c-------HHHHHH
Confidence 222111 122233 337899999998422 2 23556677788999987765411 0 234556
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchh
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
.+.+|.+++.++... .+..+.++.+++|+.. +.+.+.. .+ .++
T Consensus 134 ~~~~d~ii~~~~~~~---~~~~~~~i~vi~n~v~~~~~~~~~--~~----~~~--------------------------- 177 (357)
T PRK00726 134 ARFAKKVATAFPGAF---PEFFKPKAVVTGNPVREEILALAA--PP----ARL--------------------------- 177 (357)
T ss_pred HHHhchheECchhhh---hccCCCCEEEECCCCChHhhcccc--hh----hhc---------------------------
Confidence 678999999988543 2233456899999844 3333211 10 011
Q ss_pred hhcccccccccCCCCCeEEEEEeeccCCCCHHHHH-HHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEE
Q 011979 243 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILL-EAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 321 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 321 (473)
..+++.+ +++++|+....++...++ +|++.+.+ .+ ..+++
T Consensus 178 ---------~~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~~~~----------------------------~~-~~~~~ 218 (357)
T PRK00726 178 ---------AGREGKP-TLLVVGGSQGARVLNEAVPEALALLPE----------------------------AL-QVIHQ 218 (357)
T ss_pred ---------cCCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhh----------------------------Cc-EEEEE
Confidence 1223333 677777777777765555 88888754 23 56788
Q ss_pred EcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc---
Q 011979 322 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--- 398 (473)
Q Consensus 322 vG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~--- 398 (473)
+|+|+. +.+++..+ +++. |.+.|+ .++++.+|..||++++ ++ + +++++|||++|+|+|++..++
T Consensus 219 ~G~g~~-~~~~~~~~-~~~~-v~~~g~---~~~~~~~~~~~d~~i~---~~-g---~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 219 TGKGDL-EEVRAAYA-AGIN-AEVVPF---IDDMAAAYAAADLVIC---RA-G---ASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred cCCCcH-HHHHHHhh-cCCc-EEEeeh---HhhHHHHHHhCCEEEE---CC-C---HHHHHHHHHhCCCEEEecCCCCCc
Confidence 999975 45555556 7765 999998 4899999999999998 33 2 579999999999999987532
Q ss_pred -----cccceecCCceEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch
Q 011979 399 -----IEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW 452 (473)
Q Consensus 399 -----~~e~i~~~~~G~~~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 452 (473)
..+.+.+.++|++++ | +++++++|.+++++ ++.+++|++++++....+.-
T Consensus 286 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~ 344 (357)
T PRK00726 286 DHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD----PERLEAMAEAARALGKPDAA 344 (357)
T ss_pred CcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC----HHHHHHHHHHHHhcCCcCHH
Confidence 235677788999985 4 89999999999995 89999999999987755543
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.93 E-value=1.8e-23 Score=212.52 Aligned_cols=325 Identities=19% Similarity=0.154 Sum_probs=208.6
Q ss_pred EEEEEecCCCC-ChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHH
Q 011979 7 ACVVVLGDLGR-SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (473)
Q Consensus 7 ~~i~~~~~~g~-s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (473)
+++...+ .|+ ..+....+..|.++ ||+|+++|....... ......+++++.++....... .. ...+......+
T Consensus 2 ~~~~~~~-~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~ 75 (350)
T cd03785 2 ILIAGGG-TGGHIFPALALAEELRER-GAEVLFLGTKRGLEA-RLVPKAGIPLHTIPVGGLRRK--GS-LKKLKAPFKLL 75 (350)
T ss_pred EEEEecC-chhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh-hcccccCCceEEEEecCcCCC--Ch-HHHHHHHHHHH
Confidence 3434333 444 33444777888887 999999987643221 222345788888873211111 11 11111111111
Q ss_pred HHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhh
Q 011979 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (473)
+.... +..++ +..+||+||++++.. .. .+.++++..++|+++..|+... . ..+++.++
T Consensus 76 ~~~~~-~~~~i-~~~~pDvI~~~~~~~--~~-~~~~~a~~~~~p~v~~~~~~~~----------~-------~~~~~~~~ 133 (350)
T cd03785 76 KGVLQ-ARKIL-KKFKPDVVVGFGGYV--SG-PVGLAAKLLGIPLVIHEQNAVP----------G-------LANRLLAR 133 (350)
T ss_pred HHHHH-HHHHH-HhcCCCEEEECCCCc--ch-HHHHHHHHhCCCEEEEcCCCCc----------c-------HHHHHHHH
Confidence 11111 11222 337899999988533 22 3456677788999886655410 0 23455667
Q ss_pred cCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhh
Q 011979 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFT 244 (473)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
.+|.++++|+.++++ ..+.++.+++|+.. +.+.+.. . +.+++
T Consensus 134 ~~~~vi~~s~~~~~~---~~~~~~~~i~n~v~~~~~~~~~--~----~~~~~---------------------------- 176 (350)
T cd03785 134 FADRVALSFPETAKY---FPKDKAVVTGNPVREEILALDR--E----RARLG---------------------------- 176 (350)
T ss_pred hhCEEEEcchhhhhc---CCCCcEEEECCCCchHHhhhhh--h----HHhcC----------------------------
Confidence 799999999998876 22445788888844 3333211 1 22221
Q ss_pred cccccccccCCCCCeEEEEEeeccCCCCHH-HHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE-EEEE
Q 011979 245 SLAGIDVFLKPNRPALVVSSTSWTPDEDFG-ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIIT 322 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~-~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~iv 322 (473)
.+++.+ ++++.|+....|+.. .+++|+..+.+ +++. ++++
T Consensus 177 --------~~~~~~-~i~~~~g~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~i~ 218 (350)
T cd03785 177 --------LRPGKP-TLLVFGGSQGARAINEAVPEALAELLR-----------------------------KRLQVIHQT 218 (350)
T ss_pred --------CCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhc-----------------------------cCeEEEEEc
Confidence 233444 555555544555654 45588877753 3455 5578
Q ss_pred cCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----
Q 011979 323 GKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC---- 398 (473)
Q Consensus 323 G~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~---- 398 (473)
|.| +.+++++.++++ .++|.+.|+ .+++..+|+.||++|+ ++ + +++++|||++|+|||+++.++
T Consensus 219 G~g-~~~~l~~~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~v~---~s-g---~~t~~Eam~~G~Pvv~~~~~~~~~~ 286 (350)
T cd03785 219 GKG-DLEEVKKAYEEL-GVNYEVFPF---IDDMAAAYAAADLVIS---RA-G---ASTVAELAALGLPAILIPLPYAADD 286 (350)
T ss_pred CCc-cHHHHHHHHhcc-CCCeEEeeh---hhhHHHHHHhcCEEEE---CC-C---HhHHHHHHHhCCCEEEeecCCCCCC
Confidence 888 567788888776 468999998 4899999999999997 33 2 579999999999999987543
Q ss_pred ----cccceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccc
Q 011979 399 ----IEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 450 (473)
Q Consensus 399 ----~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
..+.+.+.++|++++ |+++++++|..++++ ++.+++|++++++....+
T Consensus 287 ~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~ 342 (350)
T cd03785 287 HQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD----PERLKAMAEAARSLARPD 342 (350)
T ss_pred cHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCCCC
Confidence 245666778999986 699999999999974 889999999999876444
No 69
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.92 E-value=6.9e-23 Score=208.13 Aligned_cols=324 Identities=15% Similarity=0.161 Sum_probs=202.8
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHH
Q 011979 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (473)
+++++..|.-|+..+...++..|.++ ||+|+++|..+.. .....+..++++++++.......+. ...+......+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~~~---~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGL-EKRLVPKAGIEFYFIPVGGLRRKGS---FRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcc-hhcccccCCCceEEEeccCcCCCCh---HHHHHHHHHHH
Confidence 45655555434444334677888886 9999999864322 1123334688888887322111111 11111111111
Q ss_pred HHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhh
Q 011979 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (473)
.... -+..++ +..+||+||++.+. +.. .+.++++..++|+++..++.. . .+.++++.+
T Consensus 77 ~~~~-~l~~~i-~~~~pDvVi~~~~~--~~~-~~~~~~~~~~~p~v~~~~~~~---------~--------~~~~~~~~~ 134 (348)
T TIGR01133 77 KAVF-QARRIL-KKFKPDAVIGFGGY--VSG-PAGLAAKLLGIPLFHHEQNAV---------P--------GLTNKLLSR 134 (348)
T ss_pred HHHH-HHHHHH-HhcCCCEEEEcCCc--ccH-HHHHHHHHcCCCEEEECCCCC---------c--------cHHHHHHHH
Confidence 1111 111222 34789999998743 222 345566677889886544331 1 123556667
Q ss_pred cCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhh
Q 011979 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFT 244 (473)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (473)
.+|.++++|+.+++++ +..+++|+.. ..+.+.. .+. .++
T Consensus 135 ~~d~ii~~~~~~~~~~------~~~~i~n~v~~~~~~~~~--~~~----~~~---------------------------- 174 (348)
T TIGR01133 135 FAKKVLISFPGAKDHF------EAVLVGNPVRQEIRSLPV--PRE----RFG---------------------------- 174 (348)
T ss_pred HhCeeEECchhHhhcC------CceEEcCCcCHHHhcccc--hhh----hcC----------------------------
Confidence 8999999999888665 2367888744 2222211 111 111
Q ss_pred cccccccccCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEE-EEE
Q 011979 245 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IIT 322 (473)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~iv 322 (473)
++++.+ +++++|+....|+... +++|++.+.+ +++++ +++
T Consensus 175 --------~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~~~ 216 (348)
T TIGR01133 175 --------LREGKP-TILVLGGSQGAKILNELVPKALAKLAE-----------------------------KGIQIVHQT 216 (348)
T ss_pred --------CCCCCe-EEEEECCchhHHHHHHHHHHHHHHHhh-----------------------------cCcEEEEEC
Confidence 233344 7778877666777654 5578877754 23455 444
Q ss_pred cCCCChHHHHHHHHHcCCCc-EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc---
Q 011979 323 GKGPDKESYEEKIRRLRLKR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--- 398 (473)
Q Consensus 323 G~g~~~~~l~~~~~~~~l~~-V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~--- 398 (473)
|++ ..+.+++.++++++.+ +.|. . . ++..+|..||++|. ++ + |++++|||++|+|+|+++.++
T Consensus 217 g~~-~~~~l~~~~~~~~l~~~v~~~-~---~-~~~~~l~~ad~~v~---~~-g---~~~l~Ea~~~g~Pvv~~~~~~~~~ 283 (348)
T TIGR01133 217 GKN-DLEKVKNVYQELGIEAIVTFI-D---E-NMAAAYAAADLVIS---RA-G---ASTVAELAAAGVPAILIPYPYAAD 283 (348)
T ss_pred Ccc-hHHHHHHHHhhCCceEEecCc-c---c-CHHHHHHhCCEEEE---CC-C---hhHHHHHHHcCCCEEEeeCCCCcc
Confidence 544 4577888888888743 3343 2 3 99999999999997 33 2 679999999999999997643
Q ss_pred ----cccceecCCceEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011979 399 ----IEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 451 (473)
Q Consensus 399 ----~~e~i~~~~~G~~~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
..+++.++.+|++++ | +++++++|.+++++ ++.+++|+++++++.+...
T Consensus 284 ~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~ 340 (348)
T TIGR01133 284 DQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD----PANLEAMAEAARKLAKPDA 340 (348)
T ss_pred chhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC----HHHHHHHHHHHHhcCCccH
Confidence 235777889999985 3 99999999999984 8999999999998764443
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.92 E-value=3.5e-22 Score=209.63 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=185.9
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+++++....++.. ...++..++|+++..|.+.. .. ....+.+.++.+.+.+.+|.++++|+.+++
T Consensus 123 ~~Pd~v~~~~~~~~~~~---l~~~~~~~ip~vl~~~~~~~-------~s-~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~ 191 (425)
T PRK05749 123 WRPKLVIIMETELWPNL---IAELKRRGIPLVLANARLSE-------RS-FKRYQKFKRFYRLLFKNIDLVLAQSEEDAE 191 (425)
T ss_pred hCCCEEEEEecchhHHH---HHHHHHCCCCEEEEeccCCh-------hh-HHHHHHHHHHHHHHHHhCCEEEECCHHHHH
Confidence 78999998865545443 22345678998886554421 00 001123446677788889999999999999
Q ss_pred HHHHHhCCc--eEEeeCCCCCCcccC-ChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC
Q 011979 180 ELAQNWGIK--ATVLYDQPPEFFHPT-SLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (473)
Q Consensus 180 ~l~~~~g~~--~~vi~n~~~~~f~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
.+.+ .|.+ +.+++|...+.+.+. .......++..++ ++
T Consensus 192 ~l~~-~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--------------------------------------~~ 232 (425)
T PRK05749 192 RFLA-LGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA--------------------------------------PN 232 (425)
T ss_pred HHHH-cCCCCCcEecccccccCCCChhhHHHHHHHHHHhc--------------------------------------CC
Confidence 9987 4654 466666433322222 1122333333321 22
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-HHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEKI 335 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~l~~~~ 335 (473)
++ +++++|+. .++.+.+++|+..+.+ ..|+++|+|+|+|+.+ +++++++
T Consensus 233 ~~-vil~~~~~--~~~~~~ll~A~~~l~~---------------------------~~~~~~liivG~g~~r~~~l~~~~ 282 (425)
T PRK05749 233 RP-VWIAASTH--EGEEELVLDAHRALLK---------------------------QFPNLLLILVPRHPERFKEVEELL 282 (425)
T ss_pred Cc-EEEEeCCC--chHHHHHHHHHHHHHH---------------------------hCCCcEEEEcCCChhhHHHHHHHH
Confidence 34 66777764 5789999999999876 2689999999999986 7899999
Q ss_pred HHcCCCcEEEecCCCC-----------cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-Cccccce
Q 011979 336 RRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELV 403 (473)
Q Consensus 336 ~~~~l~~V~~~g~~v~-----------~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i 403 (473)
++++++.+.+.|...+ .+++..+|+.||+++++ +|..+++|..++||||||+|||+++. ++..+++
T Consensus 283 ~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~--~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~ 360 (425)
T PRK05749 283 KKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG--GSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIF 360 (425)
T ss_pred HhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC--CCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHH
Confidence 9999866666654222 35899999999998774 55667799999999999999999863 5555554
Q ss_pred ecC-CceEEe--CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccc
Q 011979 404 KVD-KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 450 (473)
Q Consensus 404 ~~~-~~G~~~--~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
... .+|+++ .|+++++++|.+++++ ++.+++|++++++..++.
T Consensus 361 ~~~~~~g~~~~~~d~~~La~~l~~ll~~----~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 361 ERLLQAGAAIQVEDAEDLAKAVTYLLTD----PDARQAYGEAGVAFLKQN 406 (425)
T ss_pred HHHHHCCCeEEECCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHhC
Confidence 331 234444 5899999999999985 999999999999977443
No 71
>PHA01633 putative glycosyl transferase group 1
Probab=99.91 E-value=4.3e-22 Score=201.71 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=169.7
Q ss_pred CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCC-CCCCcccC
Q 011979 126 RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPT 203 (473)
Q Consensus 126 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~-~~~~f~~~ 203 (473)
.+.+++.++|+.. .. ....+.+.+ .+.+|++|+.+++.+.+. |.+ ..++++| +.+.|.+.
T Consensus 69 ~~~~~~tt~~g~~---------~~-------~~y~~~m~~-~~~vIavS~~t~~~L~~~-G~~~~i~I~~GVD~~~f~p~ 130 (335)
T PHA01633 69 GKKYFYTTCDGIP---------NI-------EIVNKYLLQ-DVKFIPNSKFSAENLQEV-GLQVDLPVFHGINFKIVENA 130 (335)
T ss_pred CCCceEEeeCCcC---------ch-------HHHHHHHhc-CCEEEeCCHHHHHHHHHh-CCCCceeeeCCCChhhcCcc
Confidence 3577888999882 10 122334333 568999999999999874 654 2346777 44667654
Q ss_pred ChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHh
Q 011979 204 SLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMY 283 (473)
Q Consensus 204 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 283 (473)
. ....+++++++.. .++ ...++++||+.++||++.|++|++.+
T Consensus 131 ~-~~~~~~r~~~~~~-----------------------------------~~~-~~~i~~vGRl~~~KG~~~LI~A~~~L 173 (335)
T PHA01633 131 E-KLVPQLKQKLDKD-----------------------------------FPD-TIKFGIVSGLTKRKNMDLMLQVFNEL 173 (335)
T ss_pred c-hhhHHHHHHhCcC-----------------------------------CCC-CeEEEEEeCCccccCHHHHHHHHHHH
Confidence 2 1223444443310 112 23899999999999999999999998
Q ss_pred HHHHHhhhccCCCchhhHHHhhhccCccccCC----CEEEEEEcCCCChHHHHHHHHHcCC-CcEEEec--CCCCcccHH
Q 011979 284 DRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRT--MWLSAEDYP 356 (473)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g--~~v~~~~i~ 356 (473)
.++ .| +++++++|.+ ..+++++ ++|.|+| ++++.+++.
T Consensus 174 ~~~---------------------------~p~~~~~i~l~ivG~~--------~~~~l~l~~~V~f~g~~G~~~~~dl~ 218 (335)
T PHA01633 174 NTK---------------------------YPDIAKKIHFFVISHK--------QFTQLEVPANVHFVAEFGHNSREYIF 218 (335)
T ss_pred HHh---------------------------CCCccccEEEEEEcHH--------HHHHcCCCCcEEEEecCCCCCHHHHH
Confidence 763 34 4688888732 3456677 7899995 236789999
Q ss_pred HHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccccee------------------cCCceEEeC--CHH
Q 011979 357 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK------------------VDKNGLLFS--SSS 416 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~------------------~~~~G~~~~--~~~ 416 (473)
.+|+.||++|+ ||..|+||++++||||||+|||+++.+++.|++. .+.+|+.++ |++
T Consensus 219 ~~y~~aDifV~---PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~ 295 (335)
T PHA01633 219 AFYGAMDFTIV---PSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIE 295 (335)
T ss_pred HHHHhCCEEEE---CCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHH
Confidence 99999999999 7888999999999999999999999998888644 233577775 799
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011979 417 ELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 459 (473)
Q Consensus 417 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 459 (473)
+++++|..++... +++ ..+.++++.+++|+|+.-.++.
T Consensus 296 ~la~ai~~~~~~~--~~~---~~~~~~~~~a~~f~~~~~~~~~ 333 (335)
T PHA01633 296 DMANAIILAFELQ--DRE---ERSMKLKELAKKYDIRNLYTRF 333 (335)
T ss_pred HHHHHHHHHHhcc--Chh---hhhHHHHHHHHhcCHHHHHHHh
Confidence 9999999987651 232 3355666666789988766553
No 72
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.89 E-value=9.7e-22 Score=200.17 Aligned_cols=242 Identities=13% Similarity=0.133 Sum_probs=169.5
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh--hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (473)
.+-|+||++.|+.........++.+ ..++|+|+++||.+... ...... ....++.+++.||.++|.|+.+
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~----~~~~~~----~~~~~~~~~~~aD~iI~~S~~~ 134 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLR----FDSNYY----LMKEEIDMLNLADVLIVHSKKM 134 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHh----ccccch----hhHHHHHHHHhCCEEEECCHHH
Confidence 4449999999876542212222222 23699999999985311 111111 1456788888999999999999
Q ss_pred HHHHHHHhCCc---eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 178 QHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 178 ~~~l~~~~g~~---~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
++++.+. |.+ +.++++.+.. .....+ ..+
T Consensus 135 ~~~l~~~-g~~~~~i~~~~~~~~~----~~~~~~-------------------------------------------~~~ 166 (333)
T PRK09814 135 KDRLVEE-GLTTDKIIVQGIFDYL----NDIELV-------------------------------------------KTP 166 (333)
T ss_pred HHHHHHc-CCCcCceEeccccccc----cccccc-------------------------------------------ccc
Confidence 9999874 653 3333332210 000000 001
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
..+ ..++|+|++..... | + . . .++++|+|+|+|+..+
T Consensus 167 ~~~-~~i~yaG~l~k~~~---l-~---~--~----------------------------~~~~~l~i~G~g~~~~----- 203 (333)
T PRK09814 167 SFQ-KKINFAGNLEKSPF---L-K---N--W----------------------------SQGIKLTVFGPNPEDL----- 203 (333)
T ss_pred cCC-ceEEEecChhhchH---H-H---h--c----------------------------CCCCeEEEECCCcccc-----
Confidence 112 38999999984321 1 1 0 1 3678999999998644
Q ss_pred HHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccC----CC----CCCCcHHHHHHHhcCCcEEEeccCccccceecC
Q 011979 335 IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS----SS----GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 406 (473)
Q Consensus 335 ~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~----s~----~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~ 406 (473)
...++|.|.|. ++.++++.+|+. |+++++... +. ...+|.|+.||||||+|||+++.+++.++|.++
T Consensus 204 ---~~~~~V~f~G~-~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~ 278 (333)
T PRK09814 204 ---ENSANISYKGW-FDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVEN 278 (333)
T ss_pred ---ccCCCeEEecC-CCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhC
Confidence 12269999998 999999999998 877775432 11 246899999999999999999999999999999
Q ss_pred CceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011979 407 KNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 451 (473)
Q Consensus 407 ~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
++|+++++.+++++.|..+. ++.+++|++|+++.++..+
T Consensus 279 ~~G~~v~~~~el~~~l~~~~------~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 279 GLGFVVDSLEELPEIIDNIT------EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred CceEEeCCHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998852 4678999999999774443
No 73
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=4.6e-21 Score=198.02 Aligned_cols=256 Identities=11% Similarity=0.087 Sum_probs=174.9
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+||++.|.. .+. ....+...++|++...+++. .. .+++.+.+|.++++|+.++
T Consensus 102 ~~~pD~Vi~~~~~~--~~~-~~~~~~~~~ip~~~~~td~~-------~~------------~~~~~~~ad~i~~~s~~~~ 159 (380)
T PRK13609 102 AEKPDIVINTFPII--AVP-ELKKQTGISIPTYNVLTDFC-------LH------------KIWVHREVDRYFVATDHVK 159 (380)
T ss_pred HhCcCEEEEcChHH--HHH-HHHHhcCCCCCeEEEeCCCC-------CC------------cccccCCCCEEEECCHHHH
Confidence 37899999987532 221 22223345688876555541 10 1134568999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.+.+ .|++ +.++.+.....|.+.. .+..++.+++ +++
T Consensus 160 ~~l~~-~gi~~~ki~v~G~p~~~~f~~~~--~~~~~~~~~~------------------------------------l~~ 200 (380)
T PRK13609 160 KVLVD-IGVPPEQVVETGIPIRSSFELKI--NPDIIYNKYQ------------------------------------LCP 200 (380)
T ss_pred HHHHH-cCCChhHEEEECcccChHHcCcC--CHHHHHHHcC------------------------------------CCC
Confidence 99987 4764 4444332223343221 1223444443 344
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcC-C-CChHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-G-PDKESYEE 333 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~-g-~~~~~l~~ 333 (473)
+++.++++.|+....|++..+++++.. .++++++++|+ + +..+.+++
T Consensus 201 ~~~~il~~~G~~~~~k~~~~li~~l~~-------------------------------~~~~~~viv~G~~~~~~~~l~~ 249 (380)
T PRK13609 201 NKKILLIMAGAHGVLGNVKELCQSLMS-------------------------------VPDLQVVVVCGKNEALKQSLED 249 (380)
T ss_pred CCcEEEEEcCCCCCCcCHHHHHHHHhh-------------------------------CCCcEEEEEeCCCHHHHHHHHH
Confidence 566678888999999999988888753 26788887753 3 24566777
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCcc----ccceecCCc
Q 011979 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCI----EELVKVDKN 408 (473)
Q Consensus 334 ~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~----~e~i~~~~~ 408 (473)
.+++++ ++|+|+|+ .+++.++|+.||++|. . +.|++++|||+||+|||+++ .++. .+.+.+.+.
T Consensus 250 ~~~~~~-~~v~~~g~---~~~~~~l~~~aD~~v~---~----~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~ 318 (380)
T PRK13609 250 LQETNP-DALKVFGY---VENIDELFRVTSCMIT---K----PGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGA 318 (380)
T ss_pred HHhcCC-CcEEEEec---hhhHHHHHHhccEEEe---C----CCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCc
Confidence 776655 68999998 5689999999999875 2 13779999999999999985 4442 134444455
Q ss_pred eEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011979 409 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 461 (473)
Q Consensus 409 G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 461 (473)
|+...|+++++++|.+++++ ++.+++|++++++....++++...+.+.+
T Consensus 319 ~~~~~~~~~l~~~i~~ll~~----~~~~~~m~~~~~~~~~~~s~~~i~~~i~~ 367 (380)
T PRK13609 319 AVVIRDDEEVFAKTEALLQD----DMKLLQMKEAMKSLYLPEPADHIVDDILA 367 (380)
T ss_pred EEEECCHHHHHHHHHHHHCC----HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 66667899999999999985 88999999999987766666665555443
No 74
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.88 E-value=7.9e-22 Score=180.41 Aligned_cols=156 Identities=23% Similarity=0.415 Sum_probs=141.1
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~ 335 (473)
+.+..++|+|++.+.||++.+++|+..+.++ ..++++++|+|.++....++..+
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~--------------------------~~~~~~l~i~G~~~~~~~~~~~~ 66 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEK--------------------------KNPNYKLVIVGDGEYKKELKNLI 66 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHH--------------------------HHTTEEEEEESHCCHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhh--------------------------cCCCeEEEEEccccccccccccc
Confidence 4556999999999999999999999999752 14899999999888888899999
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC-
Q 011979 336 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS- 413 (473)
Q Consensus 336 ~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~- 413 (473)
+.+++ +++.|+|. ++.+++..+|+.||++|+ +|..+++|.+++|||+||+|||+++.++..+++.++.+|++++
T Consensus 67 ~~~~~~~~i~~~~~-~~~~~l~~~~~~~di~v~---~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~ 142 (172)
T PF00534_consen 67 EKLNLKENIIFLGY-VPDDELDELYKSSDIFVS---PSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDP 142 (172)
T ss_dssp HHTTCGTTEEEEES-HSHHHHHHHHHHTSEEEE----BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEEST
T ss_pred cccccccccccccc-ccccccccccccceeccc---cccccccccccccccccccceeeccccCCceeeccccceEEeCC
Confidence 99999 89999998 888899999999999999 6777999999999999999999999999999999999999997
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
|+++++++|.+++++ ++.++.|++++++
T Consensus 143 ~~~~~l~~~i~~~l~~----~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 NDIEELADAIEKLLND----PELRQKLGKNARE 171 (172)
T ss_dssp TSHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC----HHHHHHHHHHhcC
Confidence 589999999999996 8999999999987
No 75
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.88 E-value=2.3e-20 Score=197.77 Aligned_cols=323 Identities=17% Similarity=0.141 Sum_probs=201.0
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHH-hhCCCeEEEEecCchhhhhhhhc-CCCchH-----------------HHHHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSL-GRRSHF-----------------VSIYRWIE 160 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~-~~~~~~-----------------~~~~~~~e 160 (473)
.++|++|+|. +.+...+..++ ...++|.|+|.|.... .... +....+ ..-...+|
T Consensus 147 ~~~dViH~He---Wm~g~a~~~lK~~~~~VptVfTtHAT~~---GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE 220 (590)
T cd03793 147 EPAVVAHFHE---WQAGVGLPLLRKRKVDVSTIFTTHATLL---GRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIE 220 (590)
T ss_pred CCCeEEEEcc---hhHhHHHHHHHHhCCCCCEEEEeccccc---ccccccCCcccchhhhhcchhhhhhcccchHHHHHH
Confidence 5799999999 66665555555 3467899999996521 0000 000000 02224589
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCC-CCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 161 KYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
+.....||.++++|+.++.++...++.+ -.|+||| .++.|.+.. +.++++..-..++. ++
T Consensus 221 ~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~f~~~~--e~~~~~~~~k~ki~------~f---------- 282 (590)
T cd03793 221 RAAAHCAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKKFSALH--EFQNLHAQSKEKIN------EF---------- 282 (590)
T ss_pred HHHHhhCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhhcccch--hhhhhhHHhhhhhh------HH----------
Confidence 9999999999999999999999999887 3599999 556665542 11112111110000 00
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeeccC-CCCHHHHHHHHHHhHHHHHhhhccCCC-------------ch---hhH
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDS-------------TN---EEV 301 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~-~K~~~~li~a~~~l~~~~~~~~~~~~~-------------~~---~~~ 301 (473)
-..+|.. ...+.++++.+++.+||+.. +||++.+|+|+..+..+++. .+| || .|.
T Consensus 283 ~~~~~~~----~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~----~~~~~tVvafii~p~~~~~~~~~~ 354 (590)
T cd03793 283 VRGHFYG----HYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKV----EGSDTTVVAFFIMPAKTNNFNVES 354 (590)
T ss_pred HHHHHhh----hcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEEecCccCCcCHHh
Confidence 0011111 11234556633444899998 99999999999999885332 222 11 111
Q ss_pred ------H----------Hhhhcc--------Ccc------------------------ccCCCEEEEEEcCCCChHHHHH
Q 011979 302 ------F----------LKEISD--------GKQ------------------------YLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 302 ------~----------~~~~~~--------~~~------------------------~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
. -+.+.+ +.- ...|.+.=..+- ....+.+..
T Consensus 355 l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~-~~~~D~il~ 433 (590)
T cd03793 355 LKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMV-DDANDPILN 433 (590)
T ss_pred hcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCC-cCccCHHHH
Confidence 0 000000 000 001111111111 123455777
Q ss_pred HHHHcCC-C------cEEEecCCCCc------ccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc-
Q 011979 334 KIRRLRL-K------RVAFRTMWLSA------EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI- 399 (473)
Q Consensus 334 ~~~~~~l-~------~V~~~g~~v~~------~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~- 399 (473)
.+++.++ . +|.|++-|++. .+..++++.||++|+ ||..|+||++++||||||+|||+|+.+|+
T Consensus 434 ~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~---PS~yE~fG~~~lEAma~G~PvI~t~~~gf~ 510 (590)
T cd03793 434 HIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVF---PSYYEPWGYTPAECTVMGIPSITTNLSGFG 510 (590)
T ss_pred HHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEe---ccccCCCCcHHHHHHHcCCCEEEccCcchh
Confidence 7888777 2 37777776663 358899999999999 79999999999999999999999999888
Q ss_pred ---ccceecC-CceEEeC---------CHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHhccccchHHHHHHHHHHH
Q 011979 400 ---EELVKVD-KNGLLFS---------SSSELADQLLMLFKGFPDDSDVLKKLRNG--TLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 400 ---~e~i~~~-~~G~~~~---------~~~~la~~i~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~ 463 (473)
.|++.++ ..|+.+. ++++++++|.++++. +.++.+.++ +.+.++.++|++..+.+.+..
T Consensus 511 ~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~-----~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~ 584 (590)
T cd03793 511 CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL-----SRRQRIIQRNRTERLSDLLDWRNLGRYYRKAR 584 (590)
T ss_pred hhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5665544 2455542 378888888888863 344444444 446667899998888777654
No 76
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=8.2e-21 Score=201.48 Aligned_cols=281 Identities=12% Similarity=0.021 Sum_probs=186.7
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
...|+|++|+++.+... ..+-.+..+.|+++.+|-.+....-...-+.+ ..+-+.+ ..+|.+..-+.....
T Consensus 130 ~~~d~iwihDyhl~llp--~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~------~~ll~~~-l~~D~igF~t~~~~~ 200 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP--QMLRERGPDARIGFFLHIPFPSSEIFRCLPWR------EELLRGL-LGADLIGFQTERYAR 200 (460)
T ss_pred CCCCEEEEeChhhhHHH--HHHHhhCCCCeEEEEEeCCCCChHHHhhCCCh------HHHHHHH-hcCCEEEECCHHHHH
Confidence 46799999996443322 33333345689999999763111100100110 0111111 248888888866544
Q ss_pred HHHHH-----------------hCC--ceEEeeCC-CCCCcccCC--hhHHHHHHHhhhhhccCCCCcccccCCCcCCCC
Q 011979 180 ELAQN-----------------WGI--KATVLYDQ-PPEFFHPTS--LEEKHELFCRLNKILHQPLGVQDCVSNGMEGQK 237 (473)
Q Consensus 180 ~l~~~-----------------~g~--~~~vi~n~-~~~~f~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (473)
.+.+. .|. ++.++|+| +++.|.+.. .+.+..++...+
T Consensus 201 ~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~--------------------- 259 (460)
T cd03788 201 NFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRE--------------------- 259 (460)
T ss_pred HHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHH---------------------
Confidence 33332 122 36888998 445565431 111121211111
Q ss_pred ccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC-
Q 011979 238 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR- 316 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 316 (473)
..++++ +++++||+.+.||++.+++|+..+.++ +|+
T Consensus 260 ---------------~~~~~~-~il~vgRl~~~Kgi~~ll~A~~~ll~~---------------------------~p~~ 296 (460)
T cd03788 260 ---------------RLGGRK-LIVGVDRLDYSKGIPERLLAFERLLER---------------------------YPEW 296 (460)
T ss_pred ---------------hcCCCE-EEEEecCccccCCHHHHHHHHHHHHHh---------------------------Chhh
Confidence 122333 899999999999999999999988763 454
Q ss_pred ---EEEEEEcCC-----CChHHHHHHHH----HcC-------CCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCC
Q 011979 317 ---LLFIITGKG-----PDKESYEEKIR----RLR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDL 377 (473)
Q Consensus 317 ---~~l~ivG~g-----~~~~~l~~~~~----~~~-------l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~ 377 (473)
++|+++|.+ +..+.+++.++ +++ ...|.++++.++.+++..+|+.||++|+ +|..|+|
T Consensus 297 ~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~---pS~~Eg~ 373 (460)
T cd03788 297 RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALV---TPLRDGM 373 (460)
T ss_pred cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEe---Ccccccc
Confidence 678888643 33334444443 332 2346666544899999999999999999 7889999
Q ss_pred cHHHHHHHhcCCc----EEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011979 378 PMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 451 (473)
Q Consensus 378 p~kv~Eama~G~P----vI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
|++++||||||+| ||+|+.+|..+. +.+|++++ |+++++++|.+++++ ++++++.+++++++...+++
T Consensus 374 ~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~~e~~~~~~~~~~~v~~~~ 447 (460)
T cd03788 374 NLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PLEERRERHRKLREYVRTHD 447 (460)
T ss_pred CcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999 999988887776 46789986 799999999999986 56788888899988887888
Q ss_pred hHHHHHHHHHH
Q 011979 452 WATEWEEHAKP 462 (473)
Q Consensus 452 w~~~~~~~~~~ 462 (473)
|+.-.++.+..
T Consensus 448 ~~~w~~~~l~~ 458 (460)
T cd03788 448 VQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHh
Confidence 76655555544
No 77
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.86 E-value=6.2e-19 Score=172.82 Aligned_cols=289 Identities=20% Similarity=0.277 Sum_probs=204.3
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCch-hhh-hhhhcCC-Cc-h-------HHHHHHHHHHHHhhcCC
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG-YTL-LSLSLGR-RS-H-------FVSIYRWIEKYYGKMAN 168 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~-~~~-~~~~~~~-~~-~-------~~~~~~~~e~~~~~~ad 168 (473)
-.||+.+-+....+.. -+.+.++++|++...|-.. .+. +..-..+ .+ . ..+++..+.+.....||
T Consensus 149 ~~Pdi~IDtMGY~fs~----p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad 224 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSY----PIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKAD 224 (465)
T ss_pred CCchheEecCCCcchh----HHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccce
Confidence 6799887554222221 2235578999999888653 111 1111111 11 1 12334445666677899
Q ss_pred EEEEcCHHHHHHHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccc
Q 011979 169 GCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLA 247 (473)
Q Consensus 169 ~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
.+++.|.++++.+.+-|+.. ..++|. |.+.++-..+ .+
T Consensus 225 ~vm~NssWT~nHI~qiW~~~~~~iVyP-------PC~~e~lks~---~~------------------------------- 263 (465)
T KOG1387|consen 225 IVMTNSSWTNNHIKQIWQSNTCSIVYP-------PCSTEDLKSK---FG------------------------------- 263 (465)
T ss_pred EEEecchhhHHHHHHHhhccceeEEcC-------CCCHHHHHHH---hc-------------------------------
Confidence 99999999999999999775 455543 2222211111 01
Q ss_pred ccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC
Q 011979 248 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (473)
Q Consensus 248 ~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 327 (473)
....+...++++|.+.++|+.. +++.+..+..+ ...|+ ..++++|+|+|+...
T Consensus 264 -----te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~---~pl~a------------------~~~~iKL~ivGScRn 316 (465)
T KOG1387|consen 264 -----TEGERENQLLSLAQFRPEKNHK-ILQLFALYLKN---EPLEA------------------SVSPIKLIIVGSCRN 316 (465)
T ss_pred -----ccCCcceEEEEEeecCcccccH-HHHHHHHHHhc---Cchhh------------------ccCCceEEEEeccCC
Confidence 1122445899999999999999 66666554431 11111 246799999997532
Q ss_pred h------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc-
Q 011979 328 K------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI- 399 (473)
Q Consensus 328 ~------~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~- 399 (473)
+ +.++++++.+++ ++|.|.-. +|.+++..+|..|.++|. .-..|.||+.+.||||+|+-.|+.+.||.
T Consensus 317 eeD~ervk~Lkd~a~~L~i~~~v~F~~N-~Py~~lv~lL~~a~iGvh---~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~ 392 (465)
T KOG1387|consen 317 EEDEERVKSLKDLAEELKIPKHVQFEKN-VPYEKLVELLGKATIGVH---TMWNEHFGISVVEYMAAGLIPIVHNSGGPL 392 (465)
T ss_pred hhhHHHHHHHHHHHHhcCCccceEEEec-CCHHHHHHHhccceeehh---hhhhhhcchhHHHHHhcCceEEEeCCCCCc
Confidence 2 557788899999 79999977 999999999999999998 66889999999999999999999987664
Q ss_pred ccceecC---CceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHH
Q 011979 400 EELVKVD---KNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG---LSARWATEWEEHAKPLITEV 467 (473)
Q Consensus 400 ~e~i~~~---~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~ 467 (473)
-++|.+. .+|++.++.++.+++|.+++.. +.+++..|+++|++.. ++..+++.|+..+.++++|.
T Consensus 393 lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~---~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 393 LDIVTPWDGETTGFLAPTDEEYAEAILKIVKL---NYDERNMMRRNARKSLARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred eeeeeccCCccceeecCChHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhccc
Confidence 4666543 3799999999999999999987 7888999999998765 34568899998888888763
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.85 E-value=2.8e-19 Score=185.38 Aligned_cols=266 Identities=17% Similarity=0.188 Sum_probs=176.0
Q ss_pred hCCCCEEEEeCCCch--hHHHHHHHHH-hhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCH
Q 011979 99 IASPDVFLVQNPPSV--PTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~--~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (473)
..+||+||++.|... +...+..+.. ...++|++....|++. . + ..++.+.+|.++++|+
T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~------~---~---------~~w~~~~~d~~~~~s~ 159 (382)
T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGT------C---H---------PTWFHKGVTRCFCPSE 159 (382)
T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCC------c---C---------cccccCCCCEEEECCH
Confidence 378999999765322 2221111110 1247888887777720 0 0 1233468999999999
Q ss_pred HHHHHHHHHhCCc---eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccc
Q 011979 176 AMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (473)
Q Consensus 176 ~~~~~l~~~~g~~---~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
.+++.+.+. |.+ +.++.++....|.... ..+.+++.+++
T Consensus 160 ~~~~~l~~~-g~~~~ki~v~g~~v~~~f~~~~-~~~~~~r~~~g------------------------------------ 201 (382)
T PLN02605 160 EVAKRALKR-GLEPSQIRVYGLPIRPSFARAV-RPKDELRRELG------------------------------------ 201 (382)
T ss_pred HHHHHHHHc-CCCHHHEEEECcccCHhhccCC-CCHHHHHHHcC------------------------------------
Confidence 999998874 765 5665554333343221 13445666655
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE-EEEEcCCCChHHH
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPDKESY 331 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ivG~g~~~~~l 331 (473)
++++++ +++++|+....|++..+++++...... . ....++.. ++++|+++. +
T Consensus 202 l~~~~~-~il~~Gg~~g~~~~~~li~~l~~~~~~----------------------~-~~~~~~~~~~vi~G~~~~---~ 254 (382)
T PLN02605 202 MDEDLP-AVLLMGGGEGMGPLEETARALGDSLYD----------------------K-NLGKPIGQVVVICGRNKK---L 254 (382)
T ss_pred CCCCCc-EEEEECCCcccccHHHHHHHHHHhhcc----------------------c-cccCCCceEEEEECCCHH---H
Confidence 344455 788899888889999999998764310 0 00124454 677887642 2
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc------Ccccccee
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY------SCIEELVK 404 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~------~~~~e~i~ 404 (473)
++.+++... .+|.|+|+ .++++++|+.||++|. ++ + |++++|||+||+|||+++. ++. +.+.
T Consensus 255 ~~~L~~~~~~~~v~~~G~---~~~~~~l~~aaDv~V~---~~-g---~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~ 323 (382)
T PLN02605 255 QSKLESRDWKIPVKVRGF---VTNMEEWMGACDCIIT---KA-G---PGTIAEALIRGLPIILNGYIPGQEEGNV-PYVV 323 (382)
T ss_pred HHHHHhhcccCCeEEEec---cccHHHHHHhCCEEEE---CC-C---cchHHHHHHcCCCEEEecCCCccchhhH-HHHH
Confidence 233333332 47999998 5699999999999998 33 2 6799999999999999983 333 4455
Q ss_pred cCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011979 405 VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 465 (473)
Q Consensus 405 ~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 465 (473)
+++.|+...|+++++++|.+++++ +++.+++|++++++.....+ ++++++.+++
T Consensus 324 ~~g~g~~~~~~~~la~~i~~ll~~---~~~~~~~m~~~~~~~~~~~a----~~~i~~~l~~ 377 (382)
T PLN02605 324 DNGFGAFSESPKEIARIVAEWFGD---KSDELEAMSENALKLARPEA----VFDIVHDLHE 377 (382)
T ss_pred hCCceeecCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCch----HHHHHHHHHH
Confidence 677888888999999999999985 48899999999998654444 4554444443
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.85 E-value=5.2e-19 Score=187.08 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=186.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..-|+|++|+...+ .+..+++. ..+.++.+.+|-.+....- + +.-+.+. ..++.. -.||.|-.-|....
T Consensus 126 ~~~d~vwvhDYhl~---l~p~~lr~~~~~~~igfFlHipfP~~e~--f-~~lp~r~--~il~gl--l~~dligF~t~~~~ 195 (456)
T TIGR02400 126 QPGDIVWVHDYHLM---LLPAMLRELGVQNKIGFFLHIPFPSSEI--Y-RTLPWRR--ELLEGL--LAYDLVGFQTYDDA 195 (456)
T ss_pred CCCCEEEEecchhh---HHHHHHHhhCCCCeEEEEEeCCCCChHH--H-hhCCcHH--HHHHHH--hcCCEEEECCHHHH
Confidence 45689999995433 33444444 3467888888976311100 0 0001100 011111 26899988888887
Q ss_pred HHHHHH----hC------------Cc--eEEeeCC-CCCCcccCCh--h---HHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 179 HELAQN----WG------------IK--ATVLYDQ-PPEFFHPTSL--E---EKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 179 ~~l~~~----~g------------~~--~~vi~n~-~~~~f~~~~~--~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
+.+.+. .| .. +.++|+| +++.|.+... + ...+++.+++
T Consensus 196 ~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~------------------ 257 (456)
T TIGR02400 196 RNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK------------------ 257 (456)
T ss_pred HHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC------------------
Confidence 666542 12 22 6788998 4466654311 1 1112332221
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+++ +++++||+.+.||++.+++|++.+.++ +
T Consensus 258 ---------------------~~~-vIl~VgRLd~~KGi~~ll~A~~~ll~~---------------------------~ 288 (456)
T TIGR02400 258 ---------------------GRK-LIIGVDRLDYSKGLPERLLAFERFLEE---------------------------H 288 (456)
T ss_pred ---------------------CCe-EEEEccccccccCHHHHHHHHHHHHHh---------------------------C
Confidence 233 899999999999999999999998663 4
Q ss_pred CC----EEEEEEc-----CCCChHHHHHHHHHc--------CC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCCCC
Q 011979 315 PR----LLFIITG-----KGPDKESYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (473)
Q Consensus 315 ~~----~~l~ivG-----~g~~~~~l~~~~~~~--------~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~ 374 (473)
|+ +.|+++| +++....+++.++++ +. . -|.+++..++.+++..+|+.||++|+ +|..
T Consensus 289 p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv---~S~~ 365 (456)
T TIGR02400 289 PEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLV---TPLR 365 (456)
T ss_pred ccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEE---Cccc
Confidence 54 5677774 445556666666654 11 1 25555544899999999999999999 7899
Q ss_pred CCCcHHHHHHHhcCCc----EEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011979 375 LDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 375 e~~p~kv~Eama~G~P----vI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
|+||++++||||||+| +|+|+.+|..+.+. +|++++ |++++|++|.+++++ +++++++..+..++...
T Consensus 366 EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~---~~~er~~r~~~~~~~v~ 439 (456)
T TIGR02400 366 DGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTM---PLEEREERHRAMMDKLR 439 (456)
T ss_pred cccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999888887773 788886 799999999999986 57788888887777776
Q ss_pred ccchHHHHHHHHH
Q 011979 449 SARWATEWEEHAK 461 (473)
Q Consensus 449 ~~~w~~~~~~~~~ 461 (473)
.+++..-.++.+.
T Consensus 440 ~~~~~~W~~~~l~ 452 (456)
T TIGR02400 440 KNDVQRWREDFLS 452 (456)
T ss_pred hCCHHHHHHHHHH
Confidence 6766544444443
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=1.3e-18 Score=163.16 Aligned_cols=120 Identities=33% Similarity=0.443 Sum_probs=105.2
Q ss_pred EEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC-C
Q 011979 263 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-K 341 (473)
Q Consensus 263 ~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~ 341 (473)
|+|++.+.||++.+++++..+.++ .++++++++|.++.....++.+.+++. +
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~---------------------------~~~~~~~i~G~~~~~~~~~~~~~~~~~~~ 161 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKER---------------------------GPDLKLVIAGDGPEREYLEELLAALLLLD 161 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCCChHHHHHHHHhcCCcc
Confidence 899999999999999999999773 589999999999887777766777776 8
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEe
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF 412 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~ 412 (473)
+|.+.|...+.+++..+++.||++++ ++..+++|++++|||+||+|+|+++.++..|++.++.+|+++
T Consensus 162 ~v~~~~~~~~~~~~~~~~~~~di~l~---~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 162 RVIFLGGLDPEELLALLLAAADVFVL---PSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred cEEEeCCCCcHHHHHHHhhcCCEEEe---cccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999983356677777777999999 677779999999999999999999999999999999999874
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=2.5e-18 Score=178.89 Aligned_cols=256 Identities=12% Similarity=0.157 Sum_probs=174.6
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+|+++.|. +.. .....+...++|++....|+. ... .++.+.+|.+++.|+.++
T Consensus 102 ~~kPDvVi~~~p~--~~~-~~l~~~~~~~iP~~~v~td~~-------~~~------------~w~~~~~d~~~v~s~~~~ 159 (391)
T PRK13608 102 KEKPDLILLTFPT--PVM-SVLTEQFNINIPVATVMTDYR-------LHK------------NWITPYSTRYYVATKETK 159 (391)
T ss_pred HhCcCEEEECCcH--HHH-HHHHHhcCCCCCEEEEeCCCC-------ccc------------ccccCCCCEEEECCHHHH
Confidence 3799999998653 222 111222334789865545441 110 123468999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.+.+ .|++ +.++.+...+.|.... .+.+.+.+++ +++
T Consensus 160 ~~l~~-~gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~~~~------------------------------------l~~ 200 (391)
T PRK13608 160 QDFID-VGIDPSTVKVTGIPIDNKFETPI--DQKQWLIDNN------------------------------------LDP 200 (391)
T ss_pred HHHHH-cCCCHHHEEEECeecChHhcccc--cHHHHHHHcC------------------------------------CCC
Confidence 99987 4764 4454333334443321 1233444433 345
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~ 335 (473)
+++.+++++|+++..|+++.+++++.. . .+++++++++++. .+..+++.
T Consensus 201 ~~~~ilv~~G~lg~~k~~~~li~~~~~--~----------------------------~~~~~~vvv~G~~-~~l~~~l~ 249 (391)
T PRK13608 201 DKQTILMSAGAFGVSKGFDTMITDILA--K----------------------------SANAQVVMICGKS-KELKRSLT 249 (391)
T ss_pred CCCEEEEECCCcccchhHHHHHHHHHh--c----------------------------CCCceEEEEcCCC-HHHHHHHH
Confidence 566678889999999999999998632 1 3678886664322 22223333
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCc----cccceecCCce
Q 011979 336 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSC----IEELVKVDKNG 409 (473)
Q Consensus 336 ~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~----~~e~i~~~~~G 409 (473)
+.++. ++|.++|+ .++++++|+.||++|. .+ .|+++.|||++|+|+|+++ .++ ...++.+.+.|
T Consensus 250 ~~~~~~~~v~~~G~---~~~~~~~~~~aDl~I~---k~----gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g 319 (391)
T PRK13608 250 AKFKSNENVLILGY---TKHMNEWMASSQLMIT---KP----GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG 319 (391)
T ss_pred HHhccCCCeEEEec---cchHHHHHHhhhEEEe---CC----chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE
Confidence 33444 68999998 5799999999999996 22 3679999999999999996 333 22344567788
Q ss_pred EEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011979 410 LLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 460 (473)
Q Consensus 410 ~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 460 (473)
+..+|.++++++|.+++++ ++.+++|++++++....++|++..+...
T Consensus 320 ~~~~~~~~l~~~i~~ll~~----~~~~~~m~~~~~~~~~~~s~~~i~~~l~ 366 (391)
T PRK13608 320 KIADTPEEAIKIVASLTNG----NEQLTNMISTMEQDKIKYATQTICRDLL 366 (391)
T ss_pred EEeCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 8888999999999999985 8999999999999887788877666544
No 82
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.83 E-value=2.8e-18 Score=177.01 Aligned_cols=249 Identities=19% Similarity=0.209 Sum_probs=163.0
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+||+++.+..+... +. .++..++|+++..++..+. . ... + . +.+.+.+|.+++.|+..+
T Consensus 83 ~~kPdivi~~~~~~~~~~~-a~-~a~~~~ip~i~~~~~~~~~-----~-~~~---~----~-~~~~~~~d~i~~~~~~~~ 146 (380)
T PRK00025 83 AEPPDVFIGIDAPDFNLRL-EK-KLRKAGIPTIHYVSPSVWA-----W-RQG---R----A-FKIAKATDHVLALFPFEA 146 (380)
T ss_pred HcCCCEEEEeCCCCCCHHH-HH-HHHHCCCCEEEEeCCchhh-----c-Cch---H----H-HHHHHHHhhheeCCccCH
Confidence 3789999998754443332 22 2344589998876654110 0 000 1 1 123567899999999998
Q ss_pred HHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCC
Q 011979 179 HELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (473)
Q Consensus 179 ~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (473)
+.+.+ .|.++.++.|...+.+.+.. .+...+.+++ ++++++
T Consensus 147 ~~~~~-~g~~~~~~G~p~~~~~~~~~--~~~~~~~~l~------------------------------------~~~~~~ 187 (380)
T PRK00025 147 AFYDK-LGVPVTFVGHPLADAIPLLP--DRAAARARLG------------------------------------LDPDAR 187 (380)
T ss_pred HHHHh-cCCCeEEECcCHHHhccccc--ChHHHHHHcC------------------------------------CCCCCC
Confidence 88866 57664444332112221111 2333444443 344455
Q ss_pred eEEEEEeec-cCC-CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcC-CCChHHHHHHH
Q 011979 259 ALVVSSTSW-TPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GPDKESYEEKI 335 (473)
Q Consensus 259 ~~i~~~G~~-~~~-K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~-g~~~~~l~~~~ 335 (473)
.++++.|+- .+. +..+.+++|+..+.++ .|+++++++|+ ++..+.+++.+
T Consensus 188 ~il~~~gsr~~~~~~~~~~l~~a~~~l~~~---------------------------~~~~~~ii~~~~~~~~~~~~~~~ 240 (380)
T PRK00025 188 VLALLPGSRGQEIKRLLPPFLKAAQLLQQR---------------------------YPDLRFVLPLVNPKRREQIEEAL 240 (380)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeEEEEecCChhhHHHHHHHH
Confidence 455666643 332 4468899999988763 57899999986 55667788888
Q ss_pred HHc-CCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-----------------ccC
Q 011979 336 RRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-----------------SYS 397 (473)
Q Consensus 336 ~~~-~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-----------------~~~ 397 (473)
+++ ++. +.+. .+++..+|+.||++|+ +| |...+|||++|+|+|++ +.+
T Consensus 241 ~~~~~~~-v~~~-----~~~~~~~~~~aDl~v~---~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~ 306 (380)
T PRK00025 241 AEYAGLE-VTLL-----DGQKREAMAAADAALA---AS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYV 306 (380)
T ss_pred hhcCCCC-eEEE-----cccHHHHHHhCCEEEE---Cc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCee
Confidence 777 553 4443 3689999999999999 44 56788999999999987 344
Q ss_pred ccccceecCC--ceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 398 CIEELVKVDK--NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 398 ~~~e~i~~~~--~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
++.+++.++. .+++.+ |++++++.+.+++++ ++.+++|++++.+..
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~ 356 (380)
T PRK00025 307 SLPNLLAGRELVPELLQEEATPEKLARALLPLLAD----GARRQALLEGFTELH 356 (380)
T ss_pred ehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHH
Confidence 5566665543 345543 689999999999995 899999999975544
No 83
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.1e-16 Score=168.78 Aligned_cols=293 Identities=17% Similarity=0.131 Sum_probs=206.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh----hCCCeEEEEecCchhhhhhh--hcC-CCchHHHHHH----------HHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS----LRRSAFIVDWHNFGYTLLSL--SLG-RRSHFVSIYR----------WIEKY 162 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~--~~~-~~~~~~~~~~----------~~e~~ 162 (473)
..||+||+|+ +.+.++..+.+. ...+|.|+|+|+..|.-... ... -.-+. -.+. ...|.
T Consensus 129 ~~pDIvH~hD---Wqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~-~~~~~~~l~~~~~~~~lK~ 204 (487)
T COG0297 129 WLPDIVHAHD---WQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPF-EAYASFGLEFYGQISFLKG 204 (487)
T ss_pred CCCCEEEeec---HHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCH-HHhhhceeeecCcchhhhh
Confidence 3699999999 666655555555 45799999999986422110 000 00000 1111 23444
Q ss_pred HhhcCCEEEEcCHHHHHHHHHH-hC-----------CceEEeeCC-CCCCcccCChh----------------HHHHHHH
Q 011979 163 YGKMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSLE----------------EKHELFC 213 (473)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~-~g-----------~~~~vi~n~-~~~~f~~~~~~----------------~~~~l~~ 213 (473)
-...||.|.+||+...+++... +| .+..-|.|+ +.+.+.|.+.. .+..|..
T Consensus 205 gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~ 284 (487)
T COG0297 205 GLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQE 284 (487)
T ss_pred hheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHH
Confidence 4558999999999999988722 22 125667777 33445443211 1222333
Q ss_pred hhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhcc
Q 011979 214 RLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 293 (473)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~ 293 (473)
+++. ....+.| ++.++||+..+||++.+++++..+.+.
T Consensus 285 ~~gL----------------------------------~~~~~~p-l~~~vsRl~~QKG~dl~~~~i~~~l~~------- 322 (487)
T COG0297 285 RLGL----------------------------------DVDLPGP-LFGFVSRLTAQKGLDLLLEAIDELLEQ------- 322 (487)
T ss_pred HhCC----------------------------------CCCCCCc-EEEEeeccccccchhHHHHHHHHHHHh-------
Confidence 3321 1122344 999999999999999999999999872
Q ss_pred CCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccC
Q 011979 294 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS 371 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~ 371 (473)
.+++++.|.|.. .+.+..+++.+.. ++.+.- |.+..-...++..||++++ |
T Consensus 323 ----------------------~~~~vilG~gd~~le~~~~~la~~~~~-~~~~~i-~~~~~la~~i~agaD~~lm---P 375 (487)
T COG0297 323 ----------------------GWQLVLLGTGDPELEEALRALASRHPG-RVLVVI-GYDEPLAHLIYAGADVILM---P 375 (487)
T ss_pred ----------------------CceEEEEecCcHHHHHHHHHHHHhcCc-eEEEEe-eecHHHHHHHHhcCCEEEe---C
Confidence 499999999932 2555566666653 444443 3678888999999999999 8
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEeccCccccceec--------CCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011979 372 SSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV--------DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRN 441 (473)
Q Consensus 372 s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~--------~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~ 441 (473)
|.+|+||..-++||+.|++.|+..+||+++.|.+ ..+|+++. |.++++.+|.+...-+...+...+.+..
T Consensus 376 SrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~ 455 (487)
T COG0297 376 SRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQP 455 (487)
T ss_pred CcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999999999999999999999999999986 57999995 7999999999887655545665888888
Q ss_pred HHHHhccccchHHHHHHHHHHHHHHHh
Q 011979 442 GTLEMGLSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 442 ~~~~~~~~~~w~~~~~~~~~~~~~~~~ 468 (473)
++.. ..++|+...++.. .+++.+.
T Consensus 456 ~~m~--~d~sw~~sa~~y~-~lY~~~~ 479 (487)
T COG0297 456 NAMG--ADFSWDLSAKEYV-ELYKPLL 479 (487)
T ss_pred hhcc--cccCchhHHHHHH-HHHHHHh
Confidence 8877 4799999988854 4555444
No 84
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=5.2e-18 Score=176.71 Aligned_cols=293 Identities=18% Similarity=0.175 Sum_probs=191.9
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCC----CeEEEEecCchhhhhhhhcCC-CchHHHHHHHHHHHHhhcCCEEEEcC
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR----SAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (473)
.+.|.++... . .....+...+.+ ..+..++|... ..++.+.+- .........+++......++.+++.|
T Consensus 144 ~~~d~~i~d~---~--~~~~~l~~~~~~p~~~~~i~~~~h~~~-~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns 217 (495)
T KOG0853|consen 144 EKVDPIIEDF---V--SACVPLLKQLSGPDVIIKIYFYCHFPD-SLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNS 217 (495)
T ss_pred hhhceeecch---H--HHHHHHHHHhcCCcccceeEEeccchH-HHhccccCccceeehhhhhhhhhhhhhccceEecch
Confidence 4567776665 2 112334444453 55666888773 222222111 11112334566767777899999999
Q ss_pred HHHHHHHHHHh---CC-ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccc
Q 011979 175 QAMQHELAQNW---GI-KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGI 249 (473)
Q Consensus 175 ~~~~~~l~~~~---g~-~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
...+..++..+ +. ++++.+-..+ +.+.+.--+...++.......
T Consensus 218 ~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~------------------------------- 266 (495)
T KOG0853|consen 218 YFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLY------------------------------- 266 (495)
T ss_pred hhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhccccccee-------------------------------
Confidence 98887776643 11 1444444432 222211000111111110000
Q ss_pred ccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-C--
Q 011979 250 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-P-- 326 (473)
Q Consensus 250 ~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~-- 326 (473)
..-.+....+..+.++.+.||+..+++|+..+.... .+ ...++.++.++|+. -
T Consensus 267 --~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i-------------------~~---~~~~~~hl~~~g~~G~d~ 322 (495)
T KOG0853|consen 267 --RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSI-------------------PE---PSISSEHLVVAGSRGYDE 322 (495)
T ss_pred --eeecccceEeeeeeecCCCCCceeehhhHHhhhccc-------------------CC---CCCCceEEEEecCCCccc
Confidence 001111237778899999999999999999987731 11 12467888999832 1
Q ss_pred -------ChHHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 327 -------DKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 327 -------~~~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
..+++.++++++++ +.|.|+.. ..+...|...||.-+...+|.. |.||++.+|||+||+||+|++.|
T Consensus 323 ~~sen~~~~~el~~lie~~~l~g~~v~~~~s---~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~G 398 (495)
T KOG0853|consen 323 RDSENVEYLKELLSLIEEYDLLGQFVWFLPS---TTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNG 398 (495)
T ss_pred cchhhHHHHHHHHHHHHHhCccCceEEEecC---CchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCC
Confidence 12667888999988 57888755 5666667778888777666666 99999999999999999999999
Q ss_pred ccccceecCCceEEeC-CHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHH
Q 011979 398 CIEELVKVDKNGLLFS-SSS---ELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATEWEEHAK 461 (473)
Q Consensus 398 ~~~e~i~~~~~G~~~~-~~~---~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~~~~ 461 (473)
|..|+|.++.+|++++ +.+ .++++|.++..+ ++.+.+|++++++.+.+ |+|..--++++.
T Consensus 399 GP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~----p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~ 463 (495)
T KOG0853|consen 399 GPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRD----PELWARMGKNGLKRVKEMFSWQHYSERIAS 463 (495)
T ss_pred CceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999997 444 699999999985 99999999999998854 999555555443
No 85
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.78 E-value=3.6e-17 Score=183.33 Aligned_cols=275 Identities=11% Similarity=0.055 Sum_probs=184.9
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHH-hhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..-|+|.+|+...+. +...+. ...+.++.+.+|-.+....-++.-+. +. ..++.. -.||.|-.-|....
T Consensus 146 ~~~d~vWvhDYhL~l---lp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~---r~--~il~gl--l~aDligF~t~~y~ 215 (797)
T PLN03063 146 EEGDVVWCHDYHLMF---LPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPS---RS--ELLRAV--LTADLIGFHTYDFA 215 (797)
T ss_pred CCCCEEEEecchhhh---HHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCC---HH--HHHHHH--hcCCEEEeCCHHHH
Confidence 445899999954332 333443 35678889999987421111011111 00 111222 25777777777776
Q ss_pred HHHHHH----------------hCC--ceEEeeCCC-CCCcccCC--hhHHH---HHHHhhhhhccCCCCcccccCCCcC
Q 011979 179 HELAQN----------------WGI--KATVLYDQP-PEFFHPTS--LEEKH---ELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 179 ~~l~~~----------------~g~--~~~vi~n~~-~~~f~~~~--~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.+. .|. ++.++|+|. ++.|.+.. .+.+. +++..+
T Consensus 216 r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~------------------- 276 (797)
T PLN03063 216 RHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF------------------- 276 (797)
T ss_pred HHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc-------------------
Confidence 655442 122 267889984 35554331 11111 222211
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
.+++ +++++||+.+.||++.+++|+..+.++ +
T Consensus 277 --------------------~~~~-lIl~VgRLd~~KGi~~lL~Afe~lL~~---------------------------~ 308 (797)
T PLN03063 277 --------------------AGRK-VILGVDRLDMIKGIPQKYLAFEKFLEE---------------------------N 308 (797)
T ss_pred --------------------CCCe-EEEEecccccccCHHHHHHHHHHHHHh---------------------------C
Confidence 1233 899999999999999999999998763 5
Q ss_pred CCE----EEEEE-----cCCCChHHHHHHHHHcC--C-C--------cEEEecCCCCcccHHHHHhcCcEEEEeccCCCC
Q 011979 315 PRL----LFIIT-----GKGPDKESYEEKIRRLR--L-K--------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (473)
Q Consensus 315 ~~~----~l~iv-----G~g~~~~~l~~~~~~~~--l-~--------~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~ 374 (473)
|++ .|+.+ |+|+..+.+++.++++. + . -|.+++..++.+++..+|+.||++|+ +|..
T Consensus 309 P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvv---tSlr 385 (797)
T PLN03063 309 PEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLV---TSLR 385 (797)
T ss_pred ccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEe---Cccc
Confidence 665 34433 34455566777777663 2 1 24455545899999999999999999 8999
Q ss_pred CCCcHHHHHHHhcCCc----EEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011979 375 LDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 375 e~~p~kv~Eama~G~P----vI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
|+|+++++||||||+| +|.|..+|..+.+ +.+|++++ |++++|++|.++++. +++++++..+..++.+.
T Consensus 386 EGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~v~ 460 (797)
T PLN03063 386 DGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNM---SDEERETRHRHNFQYVK 460 (797)
T ss_pred cccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhh
Confidence 9999999999999999 9999998888875 45789986 799999999999996 57788887777888887
Q ss_pred ccchHHHHHHHH
Q 011979 449 SARWATEWEEHA 460 (473)
Q Consensus 449 ~~~w~~~~~~~~ 460 (473)
.++|. .|.+.+
T Consensus 461 ~~~~~-~Wa~~f 471 (797)
T PLN03063 461 THSAQ-KWADDF 471 (797)
T ss_pred hCCHH-HHHHHH
Confidence 88886 555443
No 86
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.77 E-value=8e-17 Score=164.69 Aligned_cols=248 Identities=16% Similarity=0.073 Sum_probs=167.2
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+||+|+.. .....+.++++..++|+++..|+... .....+.. +....+.+.+|.++++|+..++
T Consensus 87 ~~pDvV~~~g~~--~~~~~~~~aa~~~~iPvv~~~~g~~s------~~~~~~~~----~~r~~~~~~ad~~~~~s~~~~~ 154 (363)
T cd03786 87 EKPDLVLVLGDT--NETLAAALAAFKLGIPVAHVEAGLRS------FDRGMPDE----ENRHAIDKLSDLHFAPTEEARR 154 (363)
T ss_pred hCCCEEEEeCCc--hHHHHHHHHHHHcCCCEEEEeccccc------CCCCCCch----HHHHHHHHHhhhccCCCHHHHH
Confidence 689999999743 23334667777789998876665310 00011111 1122345678999999999999
Q ss_pred HHHHHhCCc---eEEeeCCCCCCcc-cCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 180 ELAQNWGIK---ATVLYDQPPEFFH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 180 ~l~~~~g~~---~~vi~n~~~~~f~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
.+.+ .|.+ +.+++|+..+.+. ..........+..+ .+ +
T Consensus 155 ~l~~-~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~------------------------------------~~-~ 196 (363)
T cd03786 155 NLLQ-EGEPPERIFVVGNTMIDALLRLLELAKKELILELL------------------------------------GL-L 196 (363)
T ss_pred HHHH-cCCCcccEEEECchHHHHHHHHHHhhccchhhhhc------------------------------------cc-C
Confidence 9886 4765 5556665321111 00000000001111 12 2
Q ss_pred CCCeEEEEEeeccC---CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 256 NRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~~~~---~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
+++.+++++|+... .|+++.+++|++.+.+ +++.+++.|.++..+.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~-----------------------------~~~~vi~~~~~~~~~~l~ 247 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAE-----------------------------EDVPVVFPNHPRTRPRIR 247 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHh-----------------------------cCCEEEEECCCChHHHHH
Confidence 35557788888875 7999999999998754 257888888877778899
Q ss_pred HHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-CccccceecCCce
Q 011979 333 EKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDKNG 409 (473)
Q Consensus 333 ~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i~~~~~G 409 (473)
+.++++++ ++|.|.|+ .+.+++..+|..||++|. +|. + .+.|||++|+|||+++. +...+.++.+ .+
T Consensus 248 ~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~ad~~v~---~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g-~~ 317 (363)
T cd03786 248 EAGLEFLGHHPNVLLISP-LGYLYFLLLLKNADLVLT---DSG----G-IQEEASFLGVPVLNLRDRTERPETVESG-TN 317 (363)
T ss_pred HHHHhhccCCCCEEEECC-cCHHHHHHHHHcCcEEEE---cCc----c-HHhhhhhcCCCEEeeCCCCccchhhhee-eE
Confidence 98888875 78999987 778999999999999998 443 2 47999999999999964 4455666543 34
Q ss_pred EEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011979 410 LLFS-SSSELADQLLMLFKGFPDDSDVLKKLR 440 (473)
Q Consensus 410 ~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~ 440 (473)
..+. |+++++++|.+++++ +..+++|+
T Consensus 318 ~~~~~~~~~i~~~i~~ll~~----~~~~~~~~ 345 (363)
T cd03786 318 VLVGTDPEAILAAIEKLLSD----EFAYSLMS 345 (363)
T ss_pred EecCCCHHHHHHHHHHHhcC----chhhhcCC
Confidence 4444 699999999999985 56666554
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.76 E-value=8.2e-17 Score=165.56 Aligned_cols=270 Identities=16% Similarity=0.119 Sum_probs=173.6
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+||+|+.. .....+.++++..++|++...++.. +.....++... .......+.||.++++|+..+
T Consensus 84 ~~~pDiv~~~gd~--~~~la~a~aa~~~~ipv~h~~~g~~------s~~~~~~~~~~--~~r~~~~~~ad~~~~~s~~~~ 153 (365)
T TIGR00236 84 EEKPDIVLVQGDT--TTTLAGALAAFYLQIPVGHVEAGLR------TGDRYSPMPEE--INRQLTGHIADLHFAPTEQAK 153 (365)
T ss_pred HcCCCEEEEeCCc--hHHHHHHHHHHHhCCCEEEEeCCCC------cCCCCCCCccH--HHHHHHHHHHHhccCCCHHHH
Confidence 3789999999753 2333577888888999875433321 01111001000 011223346899999999999
Q ss_pred HHHHHHhCCc---eEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 179 HELAQNWGIK---ATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.+.+. |.+ +.+++|+. +..+.+........++.+++
T Consensus 154 ~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~-------------------------------------- 194 (365)
T TIGR00236 154 DNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG-------------------------------------- 194 (365)
T ss_pred HHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--------------------------------------
Confidence 999874 765 56777763 22211111111122222211
Q ss_pred CCCCeEEEEEe-ec-cCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 255 PNRPALVVSST-SW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 255 ~~~~~~i~~~G-~~-~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
.+++ ++++.| +. ...|+++.+++|+..+.++ .|++.++++|.+.. +..+
T Consensus 195 ~~~~-~vl~~~hr~~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~~vi~~~~~~-~~~~ 245 (365)
T TIGR00236 195 EDKR-YILLTLHRRENVGEPLENIFKAIREIVEE---------------------------FEDVQIVYPVHLNP-VVRE 245 (365)
T ss_pred CCCC-EEEEecCchhhhhhHHHHHHHHHHHHHHH---------------------------CCCCEEEEECCCCh-HHHH
Confidence 1233 444444 43 2358899999999998763 57889998865422 2222
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-ccCccccceecCCceE
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDKNGL 410 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i~~~~~G~ 410 (473)
++.+.++. ++|.|+|. ++..++..+++.||+++. +| |..+.|||+||+|||++ +.++..+.+..+ .|+
T Consensus 246 ~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~ad~vv~---~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~ 315 (365)
T TIGR00236 246 PLHKHLGDSKRVHLIEP-LEYLDFLNLAANSHLILT---DS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNK 315 (365)
T ss_pred HHHHHhCCCCCEEEECC-CChHHHHHHHHhCCEEEE---CC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceE
Confidence 34444555 68999998 889999999999999987 44 34689999999999997 567788888765 454
Q ss_pred Ee-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011979 411 LF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 464 (473)
Q Consensus 411 ~~-~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 464 (473)
++ .|+++++++|.+++++ ++.+++|+++...+.. ...++++++.|.
T Consensus 316 lv~~d~~~i~~ai~~ll~~----~~~~~~~~~~~~~~g~----~~a~~ri~~~l~ 362 (365)
T TIGR00236 316 LVGTDKENITKAAKRLLTD----PDEYKKMSNASNPYGD----GEASERIVEELL 362 (365)
T ss_pred EeCCCHHHHHHHHHHHHhC----hHHHHHhhhcCCCCcC----chHHHHHHHHHH
Confidence 55 4899999999999985 7888888876644332 345566655554
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.2e-15 Score=149.17 Aligned_cols=281 Identities=23% Similarity=0.299 Sum_probs=192.9
Q ss_pred CCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCC-chHH-HHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 102 PDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRR-SHFV-SIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 102 ~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~-~~~~-~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
+|+++.+.....+..............+.+...|.............. .... .............++.+++.+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE 163 (381)
T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHHHHH
Confidence 588887765444432223344445667888888887421110000000 1111 11112122222247889999998866
Q ss_pred HHHHHhCC-ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC
Q 011979 180 ELAQNWGI-KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (473)
Q Consensus 180 ~l~~~~g~-~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
.+...... +..+++++.. +.+.+. .. ...++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------------------~~~~~~ 197 (381)
T COG0438 164 LLEALGVPNKIVVIPNGIDTEKFAPA----------RI------------------------------------GLLPEG 197 (381)
T ss_pred HHHHhCCCCCceEecCCcCHHHcCcc----------cc------------------------------------CCCccc
Confidence 66654433 3556666532 222211 00 111222
Q ss_pred -CeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHHHHH
Q 011979 258 -PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKI 335 (473)
Q Consensus 258 -~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~~~~ 335 (473)
...++++|++.+.|+++.+++++..+... .+++.++++|.|+. .+.+.+.+
T Consensus 198 ~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~~~~~g~~~~~~~~~~~~~ 250 (381)
T COG0438 198 GKFVVLYVGRLDPEKGLDLLIEAAAKLKKR---------------------------GPDIKLVIVGDGPERREELEKLA 250 (381)
T ss_pred CceEEEEeeccChhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEEcCCCccHHHHHHHH
Confidence 24899999999999999999999999873 45589999999987 36677788
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC-
Q 011979 336 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS- 413 (473)
Q Consensus 336 ~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~- 413 (473)
++++. ++|.|.|. ++.+++..+++.||++++ ||..|++|+.++|||++|+|||+++.++..+++.++.+|++++
T Consensus 251 ~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~v~---ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~ 326 (381)
T COG0438 251 KKLGLEDNVKFLGY-VPDEELAELLASADVFVL---PSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPP 326 (381)
T ss_pred HHhCCCCcEEEecc-cCHHHHHHHHHhCCEEEe---ccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCC
Confidence 88887 78999887 887899999999999999 5655999999999999999999999999999998887788665
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPL 463 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~ 463 (473)
+.+++++++..+.++ ++.++.+.+++.+.. ..++|+..+++..+.+
T Consensus 327 ~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (381)
T COG0438 327 GDVEELADALEQLLED----PELREELGEAARERVEEEFSWERIAEQLLELY 374 (381)
T ss_pred CCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 489999999999986 566777776444434 5899998886644433
No 89
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.72 E-value=7.1e-16 Score=172.40 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=125.0
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC----EEEEEEcCC-----CChHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKG-----PDKES 330 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ivG~g-----~~~~~ 330 (473)
+++++||+.+.||+..+++|+..+.++ +|+ ++|+++|.+ +..++
T Consensus 267 ~il~VgRl~~~Kgi~~~l~A~~~ll~~---------------------------~p~~~~~v~lv~v~~~sr~~~~~~~~ 319 (726)
T PRK14501 267 IILSIDRLDYTKGIPRRLLAFERFLEK---------------------------NPEWRGKVRLVQVAVPSRTGVPQYQE 319 (726)
T ss_pred EEEEecCcccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEecCCCcchHHHHH
Confidence 899999999999999999999998663 454 789888733 33344
Q ss_pred HHHHHHHc----C-------C-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC-----cEEE
Q 011979 331 YEEKIRRL----R-------L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-----PVCA 393 (473)
Q Consensus 331 l~~~~~~~----~-------l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~-----PvI~ 393 (473)
+++.++++ + . +.+.+.|. ++.+++..+|+.||++++ +|..|+||++++||||||+ ||++
T Consensus 320 l~~~~~~~v~~in~~~~~~~~~pv~~~~~~-~~~~~l~~ly~~aDv~v~---~S~~EG~~lv~~Eama~~~~~~g~~vls 395 (726)
T PRK14501 320 MKREIDELVGRINGEFGTVDWTPIHYFYRS-LPFEELVALYRAADVALV---TPLRDGMNLVAKEYVASRTDGDGVLILS 395 (726)
T ss_pred HHHHHHHHHHHHHhhcCCCCcceEEEEeCC-CCHHHHHHHHHhccEEEe---cccccccCcccceEEEEcCCCCceEEEe
Confidence 55544443 2 1 12345565 999999999999999999 7899999999999999955 6666
Q ss_pred eccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 394 VSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 394 ~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
...|+..+++ .|++++ |+++++++|.+++.+ +++++....+.+++...+++|+.-.++.+..+
T Consensus 396 ~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~---~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l 460 (726)
T PRK14501 396 EMAGAAAELA----EALLVNPNDIEGIAAAIKRALEM---PEEEQRERMQAMQERLRRYDVHKWASDFLDEL 460 (726)
T ss_pred cccchhHHhC----cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677777764 388886 799999999999986 34455555556777677788866556555444
No 90
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=1.2e-14 Score=151.03 Aligned_cols=315 Identities=13% Similarity=0.076 Sum_probs=186.2
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 011979 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (473)
Q Consensus 23 ~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (473)
..+..|.++ |+++.+++..+........ ..+++++.++ ..++....+.+..+.+.+++. ..++ +..+|
T Consensus 23 al~~~l~~~-~~~~~~~g~gg~~m~~~g~-~~~~~~~~l~-----v~G~~~~l~~~~~~~~~~~~~----~~~l-~~~kP 90 (385)
T TIGR00215 23 GLRQQLKEH-YPNARFIGVAGPRMAAEGC-EVLYSMEELS-----VMGLREVLGRLGRLLKIRKEV----VQLA-KQAKP 90 (385)
T ss_pred HHHHHHHhc-CCCcEEEEEccHHHHhCcC-ccccChHHhh-----hccHHHHHHHHHHHHHHHHHH----HHHH-HhcCC
Confidence 445566665 8999999866432211111 1123333333 112212222222223333221 1222 34789
Q ss_pred CEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHH
Q 011979 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELA 182 (473)
Q Consensus 103 Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~ 182 (473)
|+|+..+.++++.. ...+++..++|+++++..--+ .+..+ --+.+.+.+|.++|+++..++.+.
T Consensus 91 d~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~P~~w-----aw~~~---------~~r~l~~~~d~v~~~~~~e~~~~~ 154 (385)
T TIGR00215 91 DLLVGIDAPDFNLT--KELKKKDPGIKIIYYISPQVW-----AWRKW---------RAKKIEKATDFLLAILPFEKAFYQ 154 (385)
T ss_pred CEEEEeCCCCccHH--HHHHHhhCCCCEEEEeCCcHh-----hcCcc---------hHHHHHHHHhHhhccCCCcHHHHH
Confidence 99999987666654 223455678999976522111 01111 134556789999999999998877
Q ss_pred HHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEE
Q 011979 183 QNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVV 262 (473)
Q Consensus 183 ~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 262 (473)
+ .|.+..++.|...+.+.... ..+.+.+.+++ ++++++.+++
T Consensus 155 ~-~g~~~~~vGnPv~~~~~~~~-~~~~~~r~~lg------------------------------------l~~~~~~Ilv 196 (385)
T TIGR00215 155 K-KNVPCRFVGHPLLDAIPLYK-PDRKSAREKLG------------------------------------IDHNGETLAL 196 (385)
T ss_pred h-cCCCEEEECCchhhhccccC-CCHHHHHHHcC------------------------------------CCCCCCEEEE
Confidence 5 57776666554323232110 12233344443 3445664555
Q ss_pred EEe-eccC-CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCChHHHHHHHHHcC
Q 011979 263 SST-SWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEEKIRRLR 339 (473)
Q Consensus 263 ~~G-~~~~-~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~l~~~~~~~~ 339 (473)
..| |..+ .|+...+++|+..+.++ .|++++++. +.+...+.+++..+.++
T Consensus 197 l~GSR~aei~k~~~~ll~a~~~l~~~---------------------------~p~~~~vi~~~~~~~~~~~~~~~~~~~ 249 (385)
T TIGR00215 197 LPGSRGSEVEKLFPLFLKAAQLLEQQ---------------------------EPDLRRVLPVVNFKRRLQFEQIKAEYG 249 (385)
T ss_pred ECCCCHHHHHHhHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchhHHHHHHHHHHhC
Confidence 555 5555 68899999999988763 688888665 45555667777777776
Q ss_pred C-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCc----------------ccc
Q 011979 340 L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSC----------------IEE 401 (473)
Q Consensus 340 l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~----------------~~e 401 (473)
. .+|.+.+ .++..+|+.||++|+ +| |...+|+|++|+|+|.+. .+. +..
T Consensus 250 ~~~~v~~~~-----~~~~~~l~aADl~V~---~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~n 316 (385)
T TIGR00215 250 PDLQLHLID-----GDARKAMFAADAALL---AS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPN 316 (385)
T ss_pred CCCcEEEEC-----chHHHHHHhCCEEee---cC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccH
Confidence 5 3566653 356789999999999 45 557779999999999982 222 222
Q ss_pred ceecCCceEEe--C--CHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHhc
Q 011979 402 LVKVDKNGLLF--S--SSSELADQLLMLFKGFPDDS----DVLKKLRNGTLEMG 447 (473)
Q Consensus 402 ~i~~~~~G~~~--~--~~~~la~~i~~l~~~~~~~~----~~~~~~~~~~~~~~ 447 (473)
++.+......+ + +++.+++.+.+++++ + +.++++.+...+..
T Consensus 317 il~~~~~~pel~q~~~~~~~l~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 317 ILANRLLVPELLQEECTPHPLAIALLLLLEN----GLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HhcCCccchhhcCCCCCHHHHHHHHHHHhcC----CcccHHHHHHHHHHHHHHH
Confidence 23222111111 1 488999999999985 6 77777777776654
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.68 E-value=2.5e-16 Score=138.25 Aligned_cols=130 Identities=28% Similarity=0.442 Sum_probs=95.0
Q ss_pred EEEEEeeccCCCCHHHHHH-HHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHc
Q 011979 260 LVVSSTSWTPDEDFGILLE-AALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRL 338 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~-a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~ 338 (473)
.++|+|++.+.|+++.+++ ++..+.++ .|+++|+|+|.+++ ++++.
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~---------------------------~p~~~l~i~G~~~~--~l~~~---- 50 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEK---------------------------HPDIELIIIGNGPD--ELKRL---- 50 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHH---------------------------STTEEEEEECESS---HHCCH----
T ss_pred cccccccccccccccchhhhHHHHHHHH---------------------------CcCEEEEEEeCCHH--HHHHh----
Confidence 8999999999999999999 99999884 78999999999876 23333
Q ss_pred CCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEe-CCHHH
Q 011979 339 RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSSE 417 (473)
Q Consensus 339 ~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~-~~~~~ 417 (473)
..++|+++|. + +++.++++.||++++|.. .++++|.|++|||++|+|||+++. +..+++.....|+++ +|+++
T Consensus 51 ~~~~v~~~g~-~--~e~~~~l~~~dv~l~p~~--~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~~ 124 (135)
T PF13692_consen 51 RRPNVRFHGF-V--EELPEILAAADVGLIPSR--FNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPEE 124 (135)
T ss_dssp HHCTEEEE-S----HHHHHHHHC-SEEEE-BS--S-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HHH
T ss_pred cCCCEEEcCC-H--HHHHHHHHhCCEEEEEee--CCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHHH
Confidence 1159999998 6 689999999999999642 455799999999999999999988 566666655666665 47999
Q ss_pred HHHHHHHHHhC
Q 011979 418 LADQLLMLFKG 428 (473)
Q Consensus 418 la~~i~~l~~~ 428 (473)
++++|.++++|
T Consensus 125 l~~~i~~l~~d 135 (135)
T PF13692_consen 125 LAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.60 E-value=3.5e-14 Score=152.33 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=138.8
Q ss_pred CCeEEEEEe--eccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh---HHH
Q 011979 257 RPALVVSST--SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESY 331 (473)
Q Consensus 257 ~~~~i~~~G--~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---~~l 331 (473)
.+..+++++ |+ ++|.++.+|+|+..+.. ..|+++|.+.|.|... +.+
T Consensus 318 ~~~~~I~v~idrL-~ek~~~~~I~av~~~~~---------------------------~~p~~~L~~~gy~~~~~~~~~l 369 (519)
T TIGR03713 318 LYETEIGFWIDGL-SDEELQQILQQLLQYIL---------------------------KNPDYELKILTYNNDNDITQLL 369 (519)
T ss_pred ccceEEEEEcCCC-ChHHHHHHHHHHHHHHh---------------------------hCCCeEEEEEEecCchhHHHHH
Confidence 344788899 99 99999999999999977 4799999999988643 556
Q ss_pred HHHHHHcCCC------------------------------cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHH
Q 011979 332 EEKIRRLRLK------------------------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 332 ~~~~~~~~l~------------------------------~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv 381 (473)
++.++++++. +|.|.|. .+..++.+.|..+.++|. .|..++|+ ..
T Consensus 370 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy-~~e~dl~~~~~~arl~id---~s~~eg~~-~~ 444 (519)
T TIGR03713 370 EDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTL-TNEEDLISALDKLRLIID---LSKEPDLY-TQ 444 (519)
T ss_pred HHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEec-CCHHHHHHHHhhheEEEE---CCCCCChH-HH
Confidence 5665666333 8999987 556699999999999999 78999999 99
Q ss_pred HHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011979 382 VDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 458 (473)
Q Consensus 382 ~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 458 (473)
+||++.|+|+| .-|..++|.++.||++++|.++|+++|..++.+ ++.+.++...+.+.+.+|+=++-|++
T Consensus 445 ieAiS~GiPqI---nyg~~~~V~d~~NG~li~d~~~l~~al~~~L~~----~~~wn~~~~~sy~~~~~yS~~~i~~k 514 (519)
T TIGR03713 445 ISGISAGIPQI---NKVETDYVEHNKNGYIIDDISELLKALDYYLDN----LKNWNYSLAYSIKLIDDYSSENIIER 514 (519)
T ss_pred HHHHHcCCCee---ecCCceeeEcCCCcEEeCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999 344589999999999999999999999999996 88999999999998878886666644
No 93
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.57 E-value=1.5e-12 Score=138.09 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=119.3
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC----EEEEEEcCCC-----C---
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKGP-----D--- 327 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ivG~g~-----~--- 327 (473)
++++++|+...||+...++|+..+.++ +|+ ++|+++|.+. .
T Consensus 287 iIl~VDRLDy~KGI~~kl~Afe~~L~~---------------------------~Pe~~gkv~Lvqi~~psr~~v~~y~~ 339 (487)
T TIGR02398 287 LILSAERVDYTKGILEKLNAYERLLER---------------------------RPELLGKVTLVTACVPAASGMTIYDE 339 (487)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHh---------------------------CccccCceEEEEEeCCCcccchHHHH
Confidence 899999999999999999999998663 564 7899998763 1
Q ss_pred -hHHHHHHHHHc-------CC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC----cEEEe
Q 011979 328 -KESYEEKIRRL-------RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCAV 394 (473)
Q Consensus 328 -~~~l~~~~~~~-------~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~----PvI~~ 394 (473)
+.++++++.+. +. +-+.+.+. +|.+++..+|+.||+++. +|..+|+.++..||+||+. |+|.|
T Consensus 340 l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~-v~~~el~alYr~ADV~lv---T~lrDGmNLVa~Eyva~~~~~~GvLILS 415 (487)
T TIGR02398 340 LQGQIEQAVGRINGRFARIGWTPLQFFTRS-LPYEEVSAWFAMADVMWI---TPLRDGLNLVAKEYVAAQGLLDGVLVLS 415 (487)
T ss_pred HHHHHHHHHHHHhhccCCCCCccEEEEcCC-CCHHHHHHHHHhCCEEEE---CccccccCcchhhHHhhhcCCCCCEEEe
Confidence 24445555554 33 34566666 999999999999999999 8999999999999999999 99999
Q ss_pred ccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 395 SYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 395 ~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
..+|.++.+ ..+++++ |++++|++|.+.+.. ..+++++-.+...+..
T Consensus 416 efaGaa~~l---~~AllVNP~d~~~~A~ai~~AL~m---~~~Er~~R~~~l~~~v 464 (487)
T TIGR02398 416 EFAGAAVEL---KGALLTNPYDPVRMDETIYVALAM---PKAEQQARMREMFDAV 464 (487)
T ss_pred ccccchhhc---CCCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 998888766 3478886 899999999999997 4445444333333333
No 94
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.51 E-value=2.3e-11 Score=125.07 Aligned_cols=306 Identities=13% Similarity=0.140 Sum_probs=165.6
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHH
Q 011979 4 RGRACVVVLGDLGRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~a~~L~~~---~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
|+++++...|. ++-.+-|++++++ .||+|.+++..... ..+.....|+.++.++ .....+.. ..+.+..
T Consensus 1 ~~~i~~~~GGT----GGHi~Pala~a~~l~~~g~~v~~vg~~~~~-e~~l~~~~g~~~~~~~--~~~l~~~~-~~~~~~~ 72 (352)
T PRK12446 1 MKKIVFTGGGS----AGHVTPNLAIIPYLKEDNWDISYIGSHQGI-EKTIIEKENIPYYSIS--SGKLRRYF-DLKNIKD 72 (352)
T ss_pred CCeEEEEcCCc----HHHHHHHHHHHHHHHhCCCEEEEEECCCcc-ccccCcccCCcEEEEe--ccCcCCCc-hHHHHHH
Confidence 44555444443 4444444444433 49999999855432 3344455578888777 22111110 1122233
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHH
Q 011979 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 160 (473)
..+.++..+... .++ +..+||+|+.++. ..+. .+.+++++.++|++++-.+.. .+ ...
T Consensus 73 ~~~~~~~~~~~~-~i~-~~~kPdvvi~~Gg--y~s~-p~~~aa~~~~~p~~i~e~n~~-------~g----------~~n 130 (352)
T PRK12446 73 PFLVMKGVMDAY-VRI-RKLKPDVIFSKGG--FVSV-PVVIGGWLNRVPVLLHESDMT-------PG----------LAN 130 (352)
T ss_pred HHHHHHHHHHHH-HHH-HhcCCCEEEecCc--hhhH-HHHHHHHHcCCCEEEECCCCC-------cc----------HHH
Confidence 333333222222 222 3489999999873 2222 356778888999887555441 11 223
Q ss_pred HHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC--CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 161 KYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP--EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~--~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
+.+.++++.+++.=+...+.+ ..+ .++..|+| +.|.... +...+..++
T Consensus 131 r~~~~~a~~v~~~f~~~~~~~----~~~-k~~~tG~Pvr~~~~~~~---~~~~~~~~~---------------------- 180 (352)
T PRK12446 131 KIALRFASKIFVTFEEAAKHL----PKE-KVIYTGSPVREEVLKGN---REKGLAFLG---------------------- 180 (352)
T ss_pred HHHHHhhCEEEEEccchhhhC----CCC-CeEEECCcCCccccccc---chHHHHhcC----------------------
Confidence 455677888776544333222 211 23344433 3332111 112222222
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 318 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (473)
+.+++|.++++.|+.+...=-+.+.+++..+. .++.
T Consensus 181 --------------l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~------------------------------~~~~ 216 (352)
T PRK12446 181 --------------FSRKKPVITIMGGSLGAKKINETVREALPELL------------------------------LKYQ 216 (352)
T ss_pred --------------CCCCCcEEEEECCccchHHHHHHHHHHHHhhc------------------------------cCcE
Confidence 34567778888898875332233333343332 1354
Q ss_pred EE-EEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 319 FI-ITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 319 l~-ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
++ ++|... +++..... +++...++ + .++++.+|..||++|+ . .| ++++.|++++|+|+|.....
T Consensus 217 vv~~~G~~~----~~~~~~~~--~~~~~~~f-~-~~~m~~~~~~adlvIs---r-~G---~~t~~E~~~~g~P~I~iP~~ 281 (352)
T PRK12446 217 IVHLCGKGN----LDDSLQNK--EGYRQFEY-V-HGELPDILAITDFVIS---R-AG---SNAIFEFLTLQKPMLLIPLS 281 (352)
T ss_pred EEEEeCCch----HHHHHhhc--CCcEEecc-h-hhhHHHHHHhCCEEEE---C-CC---hhHHHHHHHcCCCEEEEcCC
Confidence 44 456432 33322222 24445555 1 2689999999999997 2 22 45899999999999998642
Q ss_pred ---------ccccceecCCceEEeC----CHHHHHHHHHHHHhC
Q 011979 398 ---------CIEELVKVDKNGLLFS----SSSELADQLLMLFKG 428 (473)
Q Consensus 398 ---------~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~ 428 (473)
...+.+.+.+.|..+. +++.+.+.+.+++++
T Consensus 282 ~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 282 KFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN 325 (352)
T ss_pred CCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC
Confidence 1223454555666653 488999999999874
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=5.5e-11 Score=121.97 Aligned_cols=314 Identities=18% Similarity=0.190 Sum_probs=179.8
Q ss_pred CCChhHHHHHHHHHhhCCCc-EEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 011979 16 GRSPRMQYQALSLARQMSLE-VDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (473)
Q Consensus 16 g~s~r~~~~a~~L~~~~g~e-V~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (473)
|+-.--.-.+..|.++ |++ |.++... ......+....+++++.++. ....+...+. .+...++.++-..... .
T Consensus 12 GHv~pAlAl~~~l~~~-g~~~v~~~~~~-~~~e~~l~~~~~~~~~~I~~--~~~~~~~~~~-~~~~~~~~~~~~~~a~-~ 85 (357)
T COG0707 12 GHVFPALALAEELAKR-GWEQVIVLGTG-DGLEAFLVKQYGIEFELIPS--GGLRRKGSLK-LLKAPFKLLKGVLQAR-K 85 (357)
T ss_pred cchhHHHHHHHHHHhh-CccEEEEeccc-ccceeeeccccCceEEEEec--ccccccCcHH-HHHHHHHHHHHHHHHH-H
Confidence 3333333445566665 995 5555332 22333455566899999983 2222211111 1222222222211111 1
Q ss_pred HhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcC
Q 011979 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 95 ~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (473)
++ +..+||+|+..++ .++. .+.++++..++|++.+..|. ..+ ...+...+.|+.|.+.-
T Consensus 86 il-~~~kPd~vig~Gg--yvs~-P~~~Aa~~~~iPv~ihEqn~-------~~G----------~ank~~~~~a~~V~~~f 144 (357)
T COG0707 86 IL-KKLKPDVVIGTGG--YVSG-PVGIAAKLLGIPVIIHEQNA-------VPG----------LANKILSKFAKKVASAF 144 (357)
T ss_pred HH-HHcCCCEEEecCC--cccc-HHHHHHHhCCCCEEEEecCC-------Ccc----------hhHHHhHHhhceeeecc
Confidence 22 3489999998663 3333 25566777789999988887 222 11233445566666554
Q ss_pred HHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 175 QAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 175 ~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.......+ .+..+.-+.....|... .....+. ...
T Consensus 145 ~~~~~~~~~---~~~~~tG~Pvr~~~~~~-~~~~~~~----------------------------------------~~~ 180 (357)
T COG0707 145 PKLEAGVKP---ENVVVTGIPVRPEFEEL-PAAEVRK----------------------------------------DGR 180 (357)
T ss_pred ccccccCCC---CceEEecCcccHHhhcc-chhhhhh----------------------------------------hcc
Confidence 431111100 01222222111222211 1011100 111
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCChHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEE 333 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~l~~ 333 (473)
.+++.++++.|+.+...--+.+.+++..+.+ ++.++.. |.+. .+++++
T Consensus 181 ~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~------------------------------~~~v~~~~G~~~-~~~~~~ 229 (357)
T COG0707 181 LDKKTILVTGGSQGAKALNDLVPEALAKLAN------------------------------RIQVIHQTGKND-LEELKS 229 (357)
T ss_pred CCCcEEEEECCcchhHHHHHHHHHHHHHhhh------------------------------CeEEEEEcCcch-HHHHHH
Confidence 2567788888998766644444444444432 4555444 4433 556666
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc--------ccceec
Q 011979 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI--------EELVKV 405 (473)
Q Consensus 334 ~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~--------~e~i~~ 405 (473)
....++. +.+.++ .++++.+|+.||+.|+ -.| ++++.|..++|+|+|-.+.+.. +..+.+
T Consensus 230 ~~~~~~~--~~v~~f---~~dm~~~~~~ADLvIs----RaG---a~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~ 297 (357)
T COG0707 230 AYNELGV--VRVLPF---IDDMAALLAAADLVIS----RAG---ALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK 297 (357)
T ss_pred HHhhcCc--EEEeeH---HhhHHHHHHhccEEEe----CCc---ccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh
Confidence 6666664 888888 8999999999999997 333 3599999999999999875433 344555
Q ss_pred CCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 406 DKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 406 ~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.+.|.+.. +++.+.+.|.+++++ ++..++|++++++..
T Consensus 298 ~gaa~~i~~~~lt~~~l~~~i~~l~~~----~~~l~~m~~~a~~~~ 339 (357)
T COG0707 298 AGAALVIRQSELTPEKLAELILRLLSN----PEKLKAMAENAKKLG 339 (357)
T ss_pred CCCEEEeccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHhcC
Confidence 66677775 377999999999985 899999999999976
No 96
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.42 E-value=6.8e-11 Score=133.17 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=126.2
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE--EEEE-------cCCCChHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL--FIIT-------GKGPDKES 330 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~iv-------G~g~~~~~ 330 (473)
++++++|+...||+...++|+..+.++ +|+++ ++++ |++++.+.
T Consensus 365 iIlgVDRLD~~KGI~~kL~AfE~fL~~---------------------------~Pe~r~kVVLvQIa~psr~~v~eY~~ 417 (934)
T PLN03064 365 VMLGVDRLDMIKGIPQKILAFEKFLEE---------------------------NPEWRDKVVLLQIAVPTRTDVPEYQK 417 (934)
T ss_pred EEEEeeccccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEcCCCCCCcHHHHH
Confidence 999999999999999999999987663 67653 5666 55554444
Q ss_pred HHHHH----HHcCC-------CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC----cEEEec
Q 011979 331 YEEKI----RRLRL-------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCAVS 395 (473)
Q Consensus 331 l~~~~----~~~~l-------~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~----PvI~~~ 395 (473)
++..+ .+.+- .-|.++..-++.+++..+|+.||++++ +|..+|++++..|||+|+. ++|.|.
T Consensus 418 l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lv---TslrDGmNLva~Eyva~~~~~~GvLILSE 494 (934)
T PLN03064 418 LTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALV---TSLRDGMNLVSYEFVACQDSKKGVLILSE 494 (934)
T ss_pred HHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEe---CccccccCchHHHHHHhhcCCCCCeEEeC
Confidence 44433 33331 125655555899999999999999999 8999999999999999944 444488
Q ss_pred cCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011979 396 YSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 459 (473)
Q Consensus 396 ~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 459 (473)
.+|.++.+ +..+++++ |.+++|++|.+++.. +++++++..+..++.+..++| +.|-+.
T Consensus 495 faGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M---~~~Er~~r~~~~~~~V~~~d~-~~Wa~~ 554 (934)
T PLN03064 495 FAGAAQSL--GAGAILVNPWNITEVAASIAQALNM---PEEEREKRHRHNFMHVTTHTA-QEWAET 554 (934)
T ss_pred CCchHHHh--CCceEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhcccCCH-HHHHHH
Confidence 88877777 44678886 799999999999986 588888888888888877776 445444
No 97
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.35 E-value=1.4e-09 Score=118.54 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=136.7
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-----
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD----- 327 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~----- 327 (473)
+.++.+ ++++++|+..+|+++++++++..+.+-+ .+ ...++.|++.|+|..
T Consensus 385 ~dpd~~-~ig~v~Rl~~yKr~dLil~~i~~l~~i~-------------------~~----~~~pvq~V~~Gka~p~d~~g 440 (601)
T TIGR02094 385 LDPDVL-TIGFARRFATYKRADLIFRDLERLARIL-------------------NN----PERPVQIVFAGKAHPADGEG 440 (601)
T ss_pred cCCCCc-EEEEEEcchhhhhHHHHHHHHHHHHHHh-------------------hC----CCCCeEEEEEEecCcccchH
Confidence 456666 9999999999999999999988876410 00 013589999999853
Q ss_pred ---hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCC-CCCCcHHHHHHHhcCCcEEEeccCccccc
Q 011979 328 ---KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEEL 402 (473)
Q Consensus 328 ---~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~-~e~~p~kv~Eama~G~PvI~~~~~~~~e~ 402 (473)
.+.+.+.+++... ++|.|+-. .+.+-...++..||++++- ||. .|.+|+.-+=||..|.+.+++-.|...|.
T Consensus 441 k~~i~~i~~la~~~~~~~kv~f~~~-Yd~~lA~~i~aG~Dv~L~~--Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~ 517 (601)
T TIGR02094 441 KEIIQRIVEFSKRPEFRGRIVFLEN-YDINLARYLVSGVDVWLNN--PRRPLEASGTSGMKAAMNGVLNLSILDGWWGEG 517 (601)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcC-CCHHHHHHHhhhheeEEeC--CCCCcCCchHHHHHHHHcCCceeecccCccccc
Confidence 2334444444223 58888866 6777788899999999992 455 89999999999999999999987777776
Q ss_pred eecCCceEEeC--------------CHHHHHHHHHHHH-hCCCCC-----HHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 403 VKVDKNGLLFS--------------SSSELADQLLMLF-KGFPDD-----SDVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 403 i~~~~~G~~~~--------------~~~~la~~i~~l~-~~~~~~-----~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
. ++.|||.+. |.++|.++|.+.+ .-+-++ |..+.+|.+++.... ..++|+.+.+++..
T Consensus 518 ~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~ 596 (601)
T TIGR02094 518 Y-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVD 596 (601)
T ss_pred C-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 6 678999986 3778888886654 222112 456778877777642 46999999999887
Q ss_pred HHH
Q 011979 462 PLI 464 (473)
Q Consensus 462 ~~~ 464 (473)
.++
T Consensus 597 ~yy 599 (601)
T TIGR02094 597 KFY 599 (601)
T ss_pred HhC
Confidence 664
No 98
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.32 E-value=1e-11 Score=110.27 Aligned_cols=152 Identities=21% Similarity=0.274 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011979 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (473)
Q Consensus 19 ~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (473)
..+..++..|+++ ||+|+|+++....... .....++.+++++.... ............+.+++ ..+
T Consensus 5 ~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l----------~~~ 70 (160)
T PF13579_consen 5 RYVRELARALAAR-GHEVTVVTPQPDPEDD-EEEEDGVRVHRLPLPRR--PWPLRLLRFLRRLRRLL----------AAR 70 (160)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE---GGG--SEEETTEEEEEE--S-S--SSGGGHCCHHHHHHHHC----------HHC
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCCCCccc-ccccCCceEEeccCCcc--chhhhhHHHHHHHHHHH----------hhh
Confidence 3455677888887 9999999977655432 24467899999983222 11111112221111111 113
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCC-CchHHHHHHHHHHHHhhcCCEEEEcCHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (473)
..+||+||++++ ....++.++++..++|+|+++|+... .. ......+++++++.+.+.||.++++|+.+
T Consensus 71 ~~~~Dvv~~~~~---~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 140 (160)
T PF13579_consen 71 RERPDVVHAHSP---TAGLVAALARRRRGIPLVVTVHGTLF-------RRGSRWKRRLYRWLERRLLRRADRVIVVSEAM 140 (160)
T ss_dssp T---SEEEEEHH---HHHHHHHHHHHHHT--EEEE-SS-T-------------HHHHHHHHHHHHHHHH-SEEEESSHHH
T ss_pred ccCCeEEEeccc---chhHHHHHHHHccCCcEEEEECCCch-------hhccchhhHHHHHHHHHHHhcCCEEEECCHHH
Confidence 478999999993 34445666666678999999998632 12 33445677888999999999999999999
Q ss_pred HHHHHHHhCCc---eEEeeCC
Q 011979 178 QHELAQNWGIK---ATVLYDQ 195 (473)
Q Consensus 178 ~~~l~~~~g~~---~~vi~n~ 195 (473)
++.+.+ +|.+ +.|+|||
T Consensus 141 ~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 141 RRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHH-H---GGGEEE----
T ss_pred HHHHHH-hCCCCCcEEEeCcC
Confidence 999998 7765 8999886
No 99
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.26 E-value=3.3e-09 Score=110.84 Aligned_cols=250 Identities=14% Similarity=0.144 Sum_probs=150.2
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEE-EecCchhhhhhhh-cCCCchHHHH-----HHH-HHHHHhhcCCEEE
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLS-LGRRSHFVSI-----YRW-IEKYYGKMANGCL 171 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~-~~~~~~~~~~-----~~~-~e~~~~~~ad~vi 171 (473)
.+||+|++.+-. +..+++++.++|+++ -.|.-.+...+.. ......+.++ .-| -.+...+.|+.++
T Consensus 92 ~~p~~v~~~Gg~------v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~ 165 (396)
T TIGR03492 92 KKGDLIVAVGDI------VPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVF 165 (396)
T ss_pred hcCCEEEEECcH------HHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEe
Confidence 389999988732 133455667888766 3343321100000 0000000000 001 1345557899999
Q ss_pred EcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccccc
Q 011979 172 CVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (473)
Q Consensus 172 ~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (473)
+..+...+.+.+ .|.++.++=|...+.+..... .
T Consensus 166 ~~~~~t~~~l~~-~g~k~~~vGnPv~d~l~~~~~---~------------------------------------------ 199 (396)
T TIGR03492 166 VRDRLTARDLRR-QGVRASYLGNPMMDGLEPPER---K------------------------------------------ 199 (396)
T ss_pred CCCHHHHHHHHH-CCCeEEEeCcCHHhcCccccc---c------------------------------------------
Confidence 999999988875 577654443332122211100 0
Q ss_pred ccCCCCCeEEEEEeeccC--CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEc-CCCCh
Q 011979 252 FLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KGPDK 328 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG-~g~~~ 328 (473)
.+.++.+.+++..|+-.. .+++..+++++..+.+ . +++.+++.- .+.+.
T Consensus 200 ~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~---------------------------~-~~~~~v~~~~~~~~~ 251 (396)
T TIGR03492 200 PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD---------------------------S-QPFVFLAAIVPSLSL 251 (396)
T ss_pred ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh---------------------------C-CCeEEEEEeCCCCCH
Confidence 123345557777787744 3567799999998865 2 567776654 45566
Q ss_pred HHHHHHHHHcCCC---------------cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 329 ESYEEKIRRLRLK---------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 329 ~~l~~~~~~~~l~---------------~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
+.+++.+++.+.. ++.+..+ ..++..+|+.||++|+ . + |....|++++|+|+|.
T Consensus 252 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~ADlvI~---r-S----Gt~T~E~a~lg~P~Il 320 (396)
T TIGR03492 252 EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEILHWADLGIA---M-A----GTATEQAVGLGKPVIQ 320 (396)
T ss_pred HHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHHHHhCCEEEE---C-c----CHHHHHHHHhCCCEEE
Confidence 7777777665542 2666655 6789999999999998 3 2 2466999999999999
Q ss_pred eccCcc---ccceec-----CCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011979 394 VSYSCI---EELVKV-----DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 444 (473)
Q Consensus 394 ~~~~~~---~e~i~~-----~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 444 (473)
....+- ..+... +....+.+ +++.+++.+..++++ ++.+++|.+++.
T Consensus 321 ip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d----~~~~~~~~~~~~ 376 (396)
T TIGR03492 321 LPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLAD----PELLERCRRNGQ 376 (396)
T ss_pred EeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHH
Confidence 974322 122222 22223334 589999999999985 888888875443
No 100
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.24 E-value=3.8e-11 Score=98.96 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=78.6
Q ss_pred CCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cc
Q 011979 371 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LS 449 (473)
Q Consensus 371 ~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 449 (473)
++...+++++++|+||||+|||+.+.++..+++.++..++.++|++++.+++..++++ ++.++++++++++.. +.
T Consensus 5 ~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~----~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 5 PSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLEN----PEERRRIAKNARERVLKR 80 (92)
T ss_pred CCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHh
Confidence 4555778999999999999999999999999999999999999999999999999995 999999999999988 58
Q ss_pred cchHHHHHHHH
Q 011979 450 ARWATEWEEHA 460 (473)
Q Consensus 450 ~~w~~~~~~~~ 460 (473)
++|++.|++.+
T Consensus 81 ~t~~~~~~~il 91 (92)
T PF13524_consen 81 HTWEHRAEQIL 91 (92)
T ss_pred CCHHHHHHHHH
Confidence 99999998865
No 101
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.19 E-value=1.3e-08 Score=108.38 Aligned_cols=274 Identities=19% Similarity=0.177 Sum_probs=153.9
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
..+|+.....||+..+||+-++.+-+...+.+ =.|+|||-. ++|.... +.++++.....++ .+++.
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pDvV~pNGl~v~~~~~~~--efqnl~~~~k~ki------~~fv~---- 279 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKRKPDVVTPNGLNVDKFPALH--EFQNLHAKAKEKI------HEFVR---- 279 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS--SEE----B-GGGTSSTT--HHHHHHHHHHHHH------HHHHH----
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCCEEcCCCccccccccch--HHHHHHHHHHHHH------HHHHH----
Confidence 56799999999999999999998888777766 478899944 5554332 2222222111110 01110
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccC-CCCHHHHHHHHHHhHHHHHhh----------hccC--CCchhh-
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAI----------LNED--DSTNEE- 300 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~-~K~~~~li~a~~~l~~~~~~~----------~~~~--~~~~~~- 300 (473)
.+|.. ...+.+++..+++.+||... .||+|.+|+|+..+..+++.. .--+ .+-|-|
T Consensus 280 ------~~f~g----~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~ 349 (633)
T PF05693_consen 280 ------GHFYG----HYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVES 349 (633)
T ss_dssp ------HHSTT-------S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHH
T ss_pred ------HHhcc----cCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHH
Confidence 11111 11234456668888899865 699999999999987753221 0000 000111
Q ss_pred ----------------------------------------------HHHhhhcc-CccccCCCEEEEEEcCCCChHHHHH
Q 011979 301 ----------------------------------------------VFLKEISD-GKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 301 ----------------------------------------------~~~~~~~~-~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
+.+|.+.- .+.-..|.+.=...- ....+.+..
T Consensus 350 l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~-d~~~DpILn 428 (633)
T PF05693_consen 350 LKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLH-DDSNDPILN 428 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEET-TTTT-HHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCC-CCccCHHHH
Confidence 11111110 000011212111121 233567888
Q ss_pred HHHHcCCC-------cEEEecCCCCcc------cHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccc
Q 011979 334 KIRRLRLK-------RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 400 (473)
Q Consensus 334 ~~~~~~l~-------~V~~~g~~v~~~------~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~ 400 (473)
.++++++. +|.|++-+++.. ++.+++..+|++|+ ||+.|++|..-+|+.++|+|.|+|+.+|..
T Consensus 429 ~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvF---PSYYEPWGYTPlE~~a~gVPsITTnLsGFG 505 (633)
T PF05693_consen 429 MIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVF---PSYYEPWGYTPLECTAFGVPSITTNLSGFG 505 (633)
T ss_dssp HHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE-----SSBSS-HHHHHHHHTT--EEEETTBHHH
T ss_pred HHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeee---ccccccccCChHHHhhcCCceeeccchhHH
Confidence 89998872 377777766543 78999999999999 899999999999999999999999987766
Q ss_pred cceec-----CCceEEe-C----C----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011979 401 ELVKV-----DKNGLLF-S----S----SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 459 (473)
Q Consensus 401 e~i~~-----~~~G~~~-~----~----~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 459 (473)
-++.+ ...|+.+ + + ++++++.|.++... ++..+..+++++.+.+....|..-...+
T Consensus 506 ~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~---~~rqri~~Rn~ae~LS~~~dW~~~~~yY 575 (633)
T PF05693_consen 506 CWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQL---SRRQRIIQRNRAERLSDLADWKNFGKYY 575 (633)
T ss_dssp HHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT-----HHHHHHHHHHHHHHGGGGBHHHHCHHH
T ss_pred HHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44432 3456665 2 3 56666777777665 6778889999999999899998644333
No 102
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.18 E-value=3.2e-10 Score=102.40 Aligned_cols=165 Identities=23% Similarity=0.351 Sum_probs=84.3
Q ss_pred EecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHH
Q 011979 11 VLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (473)
Q Consensus 11 ~~~~~g~s~r~~~~-a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (473)
.....||.+++... +..|+++ ||+|+|++.......... ........ .. .. .......+....+
T Consensus 7 ~~~~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~~~~----~~~~~~~~--~~-~~-~~~~~~~~~~~~~------ 71 (177)
T PF13439_consen 7 FLPNIGGAERVVLNLARALAKR-GHEVTVVSPGVKDPIEEE----LVKIFVKI--PY-PI-RKRFLRSFFFMRR------ 71 (177)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS-SST----EEEE---T--T--SS-TSS--HHHHHHHH------
T ss_pred cCCCCChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccchhh----ccceeeee--ec-cc-ccccchhHHHHHH------
Confidence 34556777776654 4566665 999999997755432111 11111111 11 01 1111111111111
Q ss_pred HHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCE
Q 011979 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANG 169 (473)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 169 (473)
+..++ +..+||+||++.+...... .+... ++|++++.|+.+.. ........+....+...+++...+.+|.
T Consensus 72 --~~~~i-~~~~~DiVh~~~~~~~~~~---~~~~~--~~~~v~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (177)
T PF13439_consen 72 --LRRLI-KKEKPDIVHIHGPPAFWIA---LLACR--KVPIVYTIHGPYFE-RRFLKSKLSPYSYLNFRIERKLYKKADR 142 (177)
T ss_dssp --HHHHH-HHHT-SEEECCTTHCCCHH---HHHHH--CSCEEEEE-HHH---HHTTTTSCCCHHHHHHCTTHHHHCCSSE
T ss_pred --HHHHH-HHcCCCeEEecccchhHHH---HHhcc--CCCEEEEeCCCccc-ccccccccchhhhhhhhhhhhHHhcCCE
Confidence 11222 2269999999985443322 22222 89999999998521 0001123444445555556677889999
Q ss_pred EEEcCHHHHHHHHHHhCCc---eEEeeCC-CCCCc
Q 011979 170 CLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFF 200 (473)
Q Consensus 170 vi~vS~~~~~~l~~~~g~~---~~vi~n~-~~~~f 200 (473)
++|+|+.+++.+.+ +|++ +.||||| +.+.|
T Consensus 143 ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 143 IIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp EEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred EEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 99999999999999 8864 8999999 55655
No 103
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.12 E-value=6.6e-09 Score=109.46 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=104.5
Q ss_pred HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCc
Q 011979 274 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSA 352 (473)
Q Consensus 274 ~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~ 352 (473)
+..|+++..+.+. .|++.|.| |.+.+ ...+.++ .++ +||..... ...
T Consensus 291 s~~I~~i~~Lv~~---------------------------lPd~~f~I-ga~te~s~kL~~L-~~y--~nvvly~~-~~~ 338 (438)
T TIGR02919 291 SDQIEHLEEIVQA---------------------------LPDYHFHI-AALTEMSSKLMSL-DKY--DNVKLYPN-ITT 338 (438)
T ss_pred HHHHHHHHHHHHh---------------------------CCCcEEEE-EecCcccHHHHHH-Hhc--CCcEEECC-cCh
Confidence 8899999999884 79999999 88776 6677777 666 46666665 556
Q ss_pred ccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-CccccceecCCceEEeC--CHHHHHHHHHHHHhCC
Q 011979 353 EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGF 429 (473)
Q Consensus 353 ~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~ 429 (473)
.++.++|..||+++. .|.++++++.+.||++.|+||++-+. .+..+++.+ |.+++ ++++++++|..++.+
T Consensus 339 ~~l~~ly~~~dlyLd---in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d- 411 (438)
T TIGR02919 339 QKIQELYQTCDIYLD---INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND- 411 (438)
T ss_pred HHHHHHHHhccEEEE---ccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC-
Confidence 789999999999999 89999999999999999999999974 455676755 67765 699999999999985
Q ss_pred CCCHHHHHHHHHHHHH
Q 011979 430 PDDSDVLKKLRNGTLE 445 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~ 445 (473)
++..++.-..-++
T Consensus 412 ---~~~~~~~~~~q~~ 424 (438)
T TIGR02919 412 ---PNQFRELLEQQRE 424 (438)
T ss_pred ---HHHHHHHHHHHHH
Confidence 6665554444444
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.1e-07 Score=94.29 Aligned_cols=259 Identities=20% Similarity=0.250 Sum_probs=172.5
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchH-HHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||++++-..-.+|.++ .-++.+++|+++--- +...+|.- ......+.+.+.+..|.|++.|+..+
T Consensus 122 ~~P~l~Ii~EtElWPnli---~e~~~~~~p~~LvNa---------RLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~ 189 (419)
T COG1519 122 WRPKLLIIMETELWPNLI---NELKRRGIPLVLVNA---------RLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDA 189 (419)
T ss_pred cCCCEEEEEeccccHHHH---HHHHHcCCCEEEEee---------eechhhhHHHHHHHHHHHHHHHhcceeeecCHHHH
Confidence 789988887767777663 335567888765211 11111111 12233455566677899999999999
Q ss_pred HHHHHHhCCceEEeeCCCCCCcccC---ChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQNWGIKATVLYDQPPEFFHPT---SLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~~g~~~~vi~n~~~~~f~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.+.+ .|.+. |.-.|...+.-.. ...+...++..++ .
T Consensus 190 ~Rf~~-LGa~~-v~v~GNlKfd~~~~~~~~~~~~~~r~~l~--------------------------------------~ 229 (419)
T COG1519 190 QRFRS-LGAKP-VVVTGNLKFDIEPPPQLAAELAALRRQLG--------------------------------------G 229 (419)
T ss_pred HHHHh-cCCcc-eEEecceeecCCCChhhHHHHHHHHHhcC--------------------------------------C
Confidence 99988 57764 2222322222222 2223344444433 2
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-HHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEK 334 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~l~~~ 334 (473)
.+| +++..++ ....-+.++++++.++++ +||..+++|-.-|++ +.++++
T Consensus 230 ~r~-v~iaaST--H~GEeei~l~~~~~l~~~---------------------------~~~~llIlVPRHpERf~~v~~l 279 (419)
T COG1519 230 HRP-VWVAAST--HEGEEEIILDAHQALKKQ---------------------------FPNLLLILVPRHPERFKAVENL 279 (419)
T ss_pred CCc-eEEEecC--CCchHHHHHHHHHHHHhh---------------------------CCCceEEEecCChhhHHHHHHH
Confidence 255 5555555 334556788999999884 789999999998875 788999
Q ss_pred HHHcCCCcEEEecCCC-----------CcccHHHHHhcCcEEEEeccCCCCCCC-cHHHHHHHhcCCcEEEec----cCc
Q 011979 335 IRRLRLKRVAFRTMWL-----------SAEDYPLLLGSADLGVCLHTSSSGLDL-PMKVVDMFGCGLPVCAVS----YSC 398 (473)
Q Consensus 335 ~~~~~l~~V~~~g~~v-----------~~~~i~~~l~~adi~v~~~~~s~~e~~-p~kv~Eama~G~PvI~~~----~~~ 398 (473)
+++.|++-..+..... +--++..+|.-||+.++ ..+-... |-=.+|+.++|+|||.-. ...
T Consensus 280 ~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFV---GGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~e 356 (419)
T COG1519 280 LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFV---GGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSD 356 (419)
T ss_pred HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEE---CCcccCCCCCChhhHHHcCCCEEeCCccccHHH
Confidence 9999874333321101 13579999999999998 3321111 235699999999999974 456
Q ss_pred cccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 399 IEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.+.+...+.|+.++|.+.+++.+..+.. |++.+++|++++.++.
T Consensus 357 i~~~l~~~ga~~~v~~~~~l~~~v~~l~~----~~~~r~~~~~~~~~~v 401 (419)
T COG1519 357 IAERLLQAGAGLQVEDADLLAKAVELLLA----DEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHHHHhcCCeEEECCHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 66667777889999997777777777776 4899999999999977
No 105
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.07 E-value=1.9e-08 Score=101.18 Aligned_cols=117 Identities=23% Similarity=0.345 Sum_probs=83.7
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~ 335 (473)
+.+.+++|.|..... .++++++.+ ++..++++|.+...
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-------------------------------~~~~~~v~g~~~~~------- 228 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-------------------------------PDYQFIVFGPNAAD------- 228 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-------------------------------CCCeEEEEcCCccc-------
Confidence 355689999988655 566766664 56788888865211
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc------cccceecCCce
Q 011979 336 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC------IEELVKVDKNG 409 (473)
Q Consensus 336 ~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~------~~e~i~~~~~G 409 (473)
...+||++.++ ...++.+++..||++|. ..|. ..++|++++|+|+|+....+ ..+.+.+.+.|
T Consensus 229 --~~~~ni~~~~~--~~~~~~~~m~~ad~vIs----~~G~---~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~ 297 (318)
T PF13528_consen 229 --PRPGNIHVRPF--STPDFAELMAAADLVIS----KGGY---TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLG 297 (318)
T ss_pred --ccCCCEEEeec--ChHHHHHHHHhCCEEEE----CCCH---HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCe
Confidence 11368999875 34899999999999997 2331 26999999999999987543 34556667777
Q ss_pred EEeC----CHHHHHHHHHHH
Q 011979 410 LLFS----SSSELADQLLML 425 (473)
Q Consensus 410 ~~~~----~~~~la~~i~~l 425 (473)
...+ +++.|.+.|.++
T Consensus 298 ~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 298 IVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEcccccCCHHHHHHHHhcC
Confidence 7764 478888877653
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.03 E-value=3e-07 Score=95.11 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=139.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+|++++-.+ +...+.+++...++|++. +|+-.. +.+. . -....+...+.|+..++.++..++
T Consensus 92 ~~Pd~vlv~GD~~--~~la~alaA~~~~IPv~H-veaG~r-----s~~~---~---eE~~r~~i~~la~l~f~~t~~~~~ 157 (365)
T TIGR03568 92 LKPDLVVVLGDRF--EMLAAAIAAALLNIPIAH-IHGGEV-----TEGA---I---DESIRHAITKLSHLHFVATEEYRQ 157 (365)
T ss_pred hCCCEEEEeCCch--HHHHHHHHHHHhCCcEEE-EECCcc-----CCCC---c---hHHHHHHHHHHHhhccCCCHHHHH
Confidence 7899999998432 223577888888999773 333210 1111 0 011223345678889999999998
Q ss_pred HHHHHhCCc-eEEeeCCCC--CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC
Q 011979 180 ELAQNWGIK-ATVLYDQPP--EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (473)
Q Consensus 180 ~l~~~~g~~-~~vi~n~~~--~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
.|.+ .|.+ ..++..|.+ +.+.......+..+..+++ ++++
T Consensus 158 ~L~~-eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lg------------------------------------l~~~ 200 (365)
T TIGR03568 158 RVIQ-MGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLG------------------------------------IDLD 200 (365)
T ss_pred HHHH-cCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhC------------------------------------CCCC
Confidence 8877 4664 233333322 1111110011223333333 2223
Q ss_pred CCeEEEEEeecc--CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 257 RPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 257 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
++++++..-+-. .....+.+.+.++.+.+. ..++.++.-..++....+.+.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~---------------------------~~~~~vi~P~~~p~~~~i~~~ 253 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDEL---------------------------NKNYIFTYPNADAGSRIINEA 253 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHh---------------------------ccCCEEEEeCCCCCchHHHHH
Confidence 343333333222 223333344444444331 123433332233434334444
Q ss_pred HHHcC--CCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEe
Q 011979 335 IRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF 412 (473)
Q Consensus 335 ~~~~~--l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~ 412 (473)
++.+. .++|.+.++ ++..++..+++.|+++|- .|++ -+-||.++|+|||+. +...|.+..+.+++.+
T Consensus 254 i~~~~~~~~~v~l~~~-l~~~~~l~Ll~~a~~vit---dSSg-----gi~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~v 322 (365)
T TIGR03568 254 IEEYVNEHPNFRLFKS-LGQERYLSLLKNADAVIG---NSSS-----GIIEAPSFGVPTINI--GTRQKGRLRADSVIDV 322 (365)
T ss_pred HHHHhcCCCCEEEECC-CChHHHHHHHHhCCEEEE---cChh-----HHHhhhhcCCCEEee--cCCchhhhhcCeEEEe
Confidence 44432 368999999 999999999999999997 5545 337999999999965 4677888778888877
Q ss_pred C-CHHHHHHHHHHHHh
Q 011979 413 S-SSSELADQLLMLFK 427 (473)
Q Consensus 413 ~-~~~~la~~i~~l~~ 427 (473)
+ |++++.+++.++.+
T Consensus 323 g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 323 DPDKEEIVKAIEKLLD 338 (365)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 6 79999999999543
No 107
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.98 E-value=2.1e-08 Score=88.39 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011979 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (473)
Q Consensus 19 ~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (473)
.....++..|.++ ||+|++++..... ......+++++++++. . ..+ ....+. ..+ +++++ +
T Consensus 11 ~~~~~~~~~L~~~-g~~V~ii~~~~~~--~~~~~~~~i~~~~~~~--~-~k~---~~~~~~-~~~--------l~k~i-k 71 (139)
T PF13477_consen 11 TFIYNLAKELKKR-GYDVHIITPRNDY--EKYEIIEGIKVIRLPS--P-RKS---PLNYIK-YFR--------LRKII-K 71 (139)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEcCCCc--hhhhHhCCeEEEEecC--C-CCc---cHHHHH-HHH--------HHHHh-c
Confidence 4566778888887 9999999985543 2344467999999972 1 111 111111 111 12223 3
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCC-CeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcC
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (473)
..+||+||+|.+.. ...++.+++++.+ +|+|++.|+... .......++.+++.+.+.+.||.+++.|
T Consensus 72 ~~~~DvIh~h~~~~--~~~~~~l~~~~~~~~~~i~~~hg~~~-------~~~~~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 72 KEKPDVIHCHTPSP--YGLFAMLAKKLLKNKKVIYTVHGSDF-------YNSSKKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred cCCCCEEEEecCCh--HHHHHHHHHHHcCCCCEEEEecCCee-------ecCCchHHHHHHHHHHHHHhCCEEEEcC
Confidence 37899999999632 2345667777766 999999998732 1222223366788999999999999876
No 108
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.96 E-value=3.9e-07 Score=101.71 Aligned_cols=188 Identities=16% Similarity=0.061 Sum_probs=136.3
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh---
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 328 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 328 (473)
.+.++.+ +++++.|+..+|+.++++..+..+.+- ++.. ...+.|++.|++...
T Consensus 473 ~ldpd~l-tigfarRfa~YKR~~Lil~dl~rl~~i----l~~~-------------------~~pvQ~IfaGKAhP~d~~ 528 (778)
T cd04299 473 VLDPNVL-TIGFARRFATYKRATLLLRDPERLKRL----LNDP-------------------ERPVQFIFAGKAHPADEP 528 (778)
T ss_pred ccCCCcc-EEeeeecchhhhhHHHHHHHHHHHHHH----hhCC-------------------CCCeEEEEEEecCccchH
Confidence 3455555 899999999999999999988877541 1110 134899999998421
Q ss_pred -H----HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEEeccCccc
Q 011979 329 -E----SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCIE 400 (473)
Q Consensus 329 -~----~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~~~~~~~~ 400 (473)
. .+.+.+++... .+|.|+.. .+.+-...++..||+.++ +|. .|.+|+.=+=||..|.+-+++-.|-..
T Consensus 529 gK~iIk~i~~~a~~p~~~~kVvfle~-Yd~~lA~~LvaG~DvwLn---~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~ 604 (778)
T cd04299 529 GKELIQEIVEFSRRPEFRGRIVFLED-YDMALARHLVQGVDVWLN---TPRRPLEASGTSGMKAALNGGLNLSVLDGWWD 604 (778)
T ss_pred HHHHHHHHHHHHhCcCCCCcEEEEcC-CCHHHHHHHHhhhhhccc---CCCCCCCCCccchHHHHHcCCeeeecccCccc
Confidence 2 33334443333 58888866 677777888999999999 564 799999999999999999999888888
Q ss_pred cceecCCceEEeCC--------------HHHHHHHHHHHHh-CCCC-----CHHHHHHHHHHHHHh-ccccchHHHHHHH
Q 011979 401 ELVKVDKNGLLFSS--------------SSELADQLLMLFK-GFPD-----DSDVLKKLRNGTLEM-GLSARWATEWEEH 459 (473)
Q Consensus 401 e~i~~~~~G~~~~~--------------~~~la~~i~~l~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 459 (473)
|.. ++.|||.+.+ .++|.+.|.+-+- -+-+ .|..+.+|.+++... ...|+|+...+++
T Consensus 605 E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY 683 (778)
T cd04299 605 EGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREY 683 (778)
T ss_pred ccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 877 7899999953 4456666654221 1111 256677776666654 4789999999999
Q ss_pred HHHHHHHHh
Q 011979 460 AKPLITEVI 468 (473)
Q Consensus 460 ~~~~~~~~~ 468 (473)
++++|.-..
T Consensus 684 ~~~~Y~p~~ 692 (778)
T cd04299 684 VERFYLPAA 692 (778)
T ss_pred HHHhHHHHH
Confidence 999886443
No 109
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.94 E-value=8.8e-08 Score=89.17 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCeEEEEEecCC-CCChhHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHH
Q 011979 4 RGRACVVVLGDL-GRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVL 79 (473)
Q Consensus 4 ~~~~~i~~~~~~-g~s~r~~~~a~~L~~~---~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 79 (473)
|+++.|+..-.+ +.-++++.++..|+.. .|++|+|+|....... ......|+++..++. +..+. ......
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~~---~~~g~--~~si~y 74 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIPA---PKNGS--AESIIY 74 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeCC---CCCCc--hHHHHH
Confidence 566776665322 3345666665555543 4999999998755432 345567999999982 12211 111111
Q ss_pred HHHHHHHHHHHHHHHH---hhhhCCCCEEEEeCCCchhHHHHHHHHHhhC--CCeEEEEecCchhhhhhhhcCCCc-hHH
Q 011979 80 LLLKPLIQFFMLLWFL---CVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRS-HFV 153 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~-~~~ 153 (473)
.+..++..+ .....+.|++++.+... ...+..+.++++ +.|+++..|+..| ...+.+ +.+
T Consensus 75 -------d~~sl~~al~~~~~~~~~~~ii~ilg~~~--g~~~~~~~r~~~~~g~~v~vN~DGlEW-----kR~KW~~~~k 140 (185)
T PF09314_consen 75 -------DFLSLLHALRFIKQDKIKYDIILILGYGI--GPFFLPFLRKLRKKGGKVVVNMDGLEW-----KRAKWGRPAK 140 (185)
T ss_pred -------HHHHHHHHHHHHhhccccCCEEEEEcCCc--cHHHHHHHHhhhhcCCcEEECCCcchh-----hhhhcCHHHH
Confidence 111122222 11123688999887421 222344555544 5699999998843 112333 346
Q ss_pred HHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhC-CceEEeeCCC
Q 011979 154 SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWG-IKATVLYDQP 196 (473)
Q Consensus 154 ~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g-~~~~vi~n~~ 196 (473)
+++++-|+...+.||.+|+-|+..+++++++|+ .++++|++|.
T Consensus 141 ~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~~~~s~~IaYGa 184 (185)
T PF09314_consen 141 KYLKFSEKLAVKYADRLIADSKGIQDYIKERYGRKKSTFIAYGA 184 (185)
T ss_pred HHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcCCCCcEEecCCC
Confidence 788889999999999999999999999999999 7789998874
No 110
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.94 E-value=4.8e-07 Score=94.12 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=63.8
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----cccceecCCceEEeC---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS--- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e~i~~~~~G~~~~--- 413 (473)
+||.+.+. +|. ..++..||++|. .. | ..++.||+++|+|+|+....+ ..+.+...+.|...+
T Consensus 288 ~~v~~~~~-~p~---~~ll~~~d~~I~---hg-G---~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 288 DNVRVVDF-VPH---DWLLPRCAAVVH---HG-G---AGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CceEEeCC-CCH---HHHhhhhheeee---cC-C---chhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 68999877 654 566888999996 22 2 248999999999999996443 455566666777764
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
+.+++.+++.+++++ ..+++..+.+.+
T Consensus 357 ~~~~~l~~al~~~l~~-----~~~~~~~~~~~~ 384 (401)
T cd03784 357 LTAERLAAALRRLLDP-----PSRRRAAALLRR 384 (401)
T ss_pred CCHHHHHHHHHHHhCH-----HHHHHHHHHHHH
Confidence 588999999999883 334444444444
No 111
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.89 E-value=4.2e-07 Score=90.52 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=73.2
Q ss_pred CeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CChHHHHHHHH
Q 011979 258 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKESYEEKIR 336 (473)
Q Consensus 258 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~~~l~~~~~ 336 (473)
+.+++..|.....+....+++++..+.. ..++. +++|.+ +..+++++.++
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~----------------------------~~~i~-vv~G~~~~~~~~l~~~~~ 221 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQI----------------------------NISIT-LVTGSSNPNLDELKKFAK 221 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhcccc----------------------------CceEE-EEECCCCcCHHHHHHHHH
Confidence 4478888877776656677777766422 12333 477876 55677787777
Q ss_pred HcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 337 ~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
.. +++.+.++ .+++.+++..||++|. . -|.++.|++++|+|+|+.....
T Consensus 222 ~~--~~i~~~~~---~~~m~~lm~~aDl~Is----~----~G~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 222 EY--PNIILFID---VENMAELMNEADLAIG----A----AGSTSWERCCLGLPSLAICLAE 270 (279)
T ss_pred hC--CCEEEEeC---HHHHHHHHHHCCEEEE----C----CchHHHHHHHcCCCEEEEEecc
Confidence 64 48999988 8899999999999997 2 2458999999999999987543
No 112
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.89 E-value=8e-07 Score=92.40 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=71.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
.++.+|.+.+.+.+. .+ .++|.+.+. +|+. .++..||++|. .+ | ..++.||+++|+|+|+....
T Consensus 257 ~i~~~g~~~~~~~~~----~~-~~~v~~~~~-~p~~---~ll~~~~~~I~---hg-G---~~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 257 VVLSVGRGVDPADLG----EL-PPNVEVRQW-VPQL---EILKKADAFIT---HG-G---MNSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred EEEEECCCCChhHhc----cC-CCCeEEeCC-CCHH---HHHhhCCEEEE---CC-C---chHHHHHHHhCCCEEecCCc
Confidence 455567665433222 11 168988876 7764 67899999887 23 2 13789999999999997532
Q ss_pred ----ccccceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 398 ----CIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 398 ----~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
...+.+.+.+.|.... +.++++++|.+++++ ++.++++++-+.+
T Consensus 321 ~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~----~~~~~~~~~l~~~ 372 (392)
T TIGR01426 321 ADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD----PRYAERLRKMRAE 372 (392)
T ss_pred ccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Confidence 2334455666777664 478999999999985 6544444444433
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=6.9e-06 Score=83.64 Aligned_cols=326 Identities=16% Similarity=0.159 Sum_probs=184.2
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEE-EeecCCCCCCCCcchhHHHHHHHHHHHHH
Q 011979 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH-TMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (473)
Q Consensus 10 ~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (473)
++.|.-.+.---.....+|-.+.+ +|.+++-.+.... ..|++.. .+. ....-+..-.++.+..+.+..+++
T Consensus 6 i~AGE~SGDllGa~LikaLk~~~~-~~efvGvgG~~m~-----aeG~~sl~~~~--elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 6 LSAGEASGDLLGAGLIKALKARYP-DVEFVGVGGEKME-----AEGLESLFDME--ELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred EEecccchhhHHHHHHHHHHhhCC-CeEEEEeccHHHH-----hccCccccCHH--HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455555443334445566666534 8999887654432 1132211 111 000111222233333333333332
Q ss_pred HHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcC
Q 011979 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (473)
Q Consensus 89 ~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 167 (473)
... + ...+||+++.-+.|.+...+ +..+++ ..++|+|+.+-..-| .+..++ -..+.+..
T Consensus 78 ~~~----i-~~~kpD~~i~IDsPdFnl~v-ak~lrk~~p~i~iihYV~PsVW-----AWr~~R---------a~~i~~~~ 137 (381)
T COG0763 78 VRY----I-LANKPDVLILIDSPDFNLRV-AKKLRKAGPKIKIIHYVSPSVW-----AWRPKR---------AVKIAKYV 137 (381)
T ss_pred HHH----H-HhcCCCEEEEeCCCCCchHH-HHHHHHhCCCCCeEEEECccee-----eechhh---------HHHHHHHh
Confidence 211 1 13899999987777776664 444444 456898876554322 111111 12334578
Q ss_pred CEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccc
Q 011979 168 NGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLA 247 (473)
Q Consensus 168 d~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
|++.++=+...+++.+ .|.+.+.+-+...+.. |. ...+...+++++
T Consensus 138 D~lLailPFE~~~y~k-~g~~~~yVGHpl~d~i-~~-~~~r~~ar~~l~------------------------------- 183 (381)
T COG0763 138 DHLLAILPFEPAFYDK-FGLPCTYVGHPLADEI-PL-LPDREAAREKLG------------------------------- 183 (381)
T ss_pred hHeeeecCCCHHHHHh-cCCCeEEeCChhhhhc-cc-cccHHHHHHHhC-------------------------------
Confidence 9999999999988876 6887555544322222 11 113444666665
Q ss_pred ccccccCCCCCeEEEEEeeccC--CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC
Q 011979 248 GIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 325 (473)
Q Consensus 248 ~~~~~~~~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 325 (473)
.+.+++.+.+.-|+=.. .+....+.+|+..++.+ +|++++++--..
T Consensus 184 -----~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~---------------------------~~~~~~vlp~~~ 231 (381)
T COG0763 184 -----IDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKAR---------------------------YPDLKFVLPLVN 231 (381)
T ss_pred -----CCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhh---------------------------CCCceEEEecCc
Confidence 34455657777776543 35678888899988874 799999998765
Q ss_pred CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCcc-----
Q 011979 326 PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCI----- 399 (473)
Q Consensus 326 ~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~----- 399 (473)
+..+.+++...+........+ +...+-.+.+..||+.+. . .|++.+|++.+|+|.|++- ...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~aD~al~---a-----SGT~tLE~aL~g~P~Vv~Yk~~~it~~ia 300 (381)
T COG0763 232 AKYRRIIEEALKWEVAGLSLI---LIDGEKRKAFAAADAALA---A-----SGTATLEAALAGTPMVVAYKVKPITYFIA 300 (381)
T ss_pred HHHHHHHHHHhhccccCceEE---ecCchHHHHHHHhhHHHH---h-----ccHHHHHHHHhCCCEEEEEeccHHHHHHH
Confidence 543333333322221012222 335788889999999997 2 3569999999999999873 3322
Q ss_pred -----------ccceecCCceEEeC-------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 400 -----------EELVKVDKNGLLFS-------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 400 -----------~e~i~~~~~G~~~~-------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.++.+. .+++ .++.+++++..++.+ .+.++++.+...+..
T Consensus 301 k~lvk~~yisLpNIi~~~---~ivPEliq~~~~pe~la~~l~~ll~~----~~~~~~~~~~~~~l~ 359 (381)
T COG0763 301 KRLVKLPYVSLPNILAGR---EIVPELIQEDCTPENLARALEELLLN----GDRREALKEKFRELH 359 (381)
T ss_pred HHhccCCcccchHHhcCC---ccchHHHhhhcCHHHHHHHHHHHhcC----hHhHHHHHHHHHHHH
Confidence 2222111 1121 388999999999986 555556655555544
No 114
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.58 E-value=1.6e-06 Score=89.61 Aligned_cols=252 Identities=13% Similarity=0.147 Sum_probs=121.6
Q ss_pred HhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCCCC--CC
Q 011979 123 SSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP--EF 199 (473)
Q Consensus 123 ~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~--~~ 199 (473)
...++.++|..||+.+............... .......+..|.+++.|+.+++.+.+.++.+ ..++..|-| +.
T Consensus 95 ~~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~----~~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~ 170 (369)
T PF04464_consen 95 KKRKNQKYIQLWHGIPLKKIGYDSPDNKNYR----KNYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDY 170 (369)
T ss_dssp ---TTSEEEE--SS--SB--GGG-S---TS-----HHHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHH
T ss_pred ccCCCcEEEEecCCCcccccchhccccccch----hhhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhH
Confidence 3356789999999985322111110000000 0122344678999999999999999988887 366667743 22
Q ss_pred cccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCH------
Q 011979 200 FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDF------ 273 (473)
Q Consensus 200 f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~------ 273 (473)
+.......+..+...++ .+.++. +|+|+-++.....-
T Consensus 171 l~~~~~~~~~~i~~~~~------------------------------------~~~~~k-~ILyaPT~R~~~~~~~~~~~ 213 (369)
T PF04464_consen 171 LFNKSKENRNRIKKKLG------------------------------------IDKDKK-VILYAPTWRDNSSNEYFKFF 213 (369)
T ss_dssp HHHSTT-HHHHHHHHTT--------------------------------------SS-E-EEEEE----GGG--GGSS--
T ss_pred HhccCHHHHHHHHHHhc------------------------------------cCCCCc-EEEEeecccccccccccccc
Confidence 21222222445555544 223333 88888776554432
Q ss_pred HH--HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHH-cCC-CcEEEecCC
Q 011979 274 GI--LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR-LRL-KRVAFRTMW 349 (473)
Q Consensus 274 ~~--li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~-~~l-~~V~~~g~~ 349 (473)
.. -.+.+..+ ..+++.+++-.-.. ....... ... ++|.+...
T Consensus 214 ~~~~~~~~l~~~-----------------------------~~~~~~li~k~Hp~----~~~~~~~~~~~~~~i~~~~~- 259 (369)
T PF04464_consen 214 FSDLDFEKLNFL-----------------------------LKNNYVLIIKPHPN----MKKKFKDFKEDNSNIIFVSD- 259 (369)
T ss_dssp --TT-HHHHHHH-----------------------------HTTTEEEEE--SHH----HHTT----TT-TTTEEE-TT-
T ss_pred ccccCHHHHHHH-----------------------------hCCCcEEEEEeCch----hhhchhhhhccCCcEEECCC-
Confidence 11 12222211 14678888876432 2222221 222 58888765
Q ss_pred CCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec--cC------ccccceecCCceEEeCCHHHHHHH
Q 011979 350 LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS--YS------CIEELVKVDKNGLLFSSSSELADQ 421 (473)
Q Consensus 350 v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~--~~------~~~e~i~~~~~G~~~~~~~~la~~ 421 (473)
.+++.+++..||++|. . ++..++|++.+++|||.-. .. |.-.-..+...|-++.+.++|.++
T Consensus 260 --~~~~~~ll~~aDiLIT---D-----ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~ 329 (369)
T PF04464_consen 260 --NEDIYDLLAAADILIT---D-----YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEA 329 (369)
T ss_dssp ---S-HHHHHHT-SEEEE---S-----S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHH
T ss_pred --CCCHHHHHHhcCEEEE---e-----chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHH
Confidence 6699999999999997 2 2338999999999999753 21 111112234457788899999999
Q ss_pred HHHHHhCCCCCHHHH-HHHHHHHHHhccccchHHHHHHHHHHHH
Q 011979 422 LLMLFKGFPDDSDVL-KKLRNGTLEMGLSARWATEWEEHAKPLI 464 (473)
Q Consensus 422 i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 464 (473)
|..++++ ++.. ++..+...++. .+.=.++-+++++.++
T Consensus 330 i~~~~~~----~~~~~~~~~~~~~~~~-~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 330 IENIIEN----PDEYKEKREKFRDKFF-KYNDGNSSERIVNYIF 368 (369)
T ss_dssp HTTHHHH----HHHTHHHHHHHHHHHS-TT--S-HHHHHHHHHH
T ss_pred HHhhhhC----CHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHh
Confidence 9998875 3332 33333333433 3444566677666554
No 115
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.57 E-value=3.5e-05 Score=82.22 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=98.5
Q ss_pred eEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC---------hH
Q 011979 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD---------KE 329 (473)
Q Consensus 259 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~---------~~ 329 (473)
.+++.+.|++..||+..=++|+..+.++ .|-...++.|+=++.... ++
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~-----------------------~P~~~~kv~liQi~~psr~~~~~y~~~~~ 333 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLER-----------------------YPEYRGKVVLIQIAVPSREDVPEYQELRR 333 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH------------------------GGGTTTEEEEEE--B-STTSHHHHHHHH
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHh-----------------------CcCccCcEEEEEEeeccCccchhHHHHHH
Confidence 3899999999999999999999988763 111234577777764321 13
Q ss_pred HHHHHHHHcC----CC---cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCc----EEEeccCc
Q 011979 330 SYEEKIRRLR----LK---RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP----VCAVSYSC 398 (473)
Q Consensus 330 ~l~~~~~~~~----l~---~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~P----vI~~~~~~ 398 (473)
++++++.+.+ -. -|.++..-++.+++..+|+.||++++ +|..+|+-++..||.+|..+ +|.|..+|
T Consensus 334 ~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lv---TslrDGmNLva~Eyva~q~~~~GvLiLSefaG 410 (474)
T PF00982_consen 334 EVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALV---TSLRDGMNLVAKEYVACQDDNPGVLILSEFAG 410 (474)
T ss_dssp HHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE-----SSBS--HHHHHHHHHS-TS--EEEEETTBG
T ss_pred HHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEe---cchhhccCCcceEEEEEecCCCCceEeeccCC
Confidence 3444444332 21 25666544899999999999999999 89999999999999999876 67778888
Q ss_pred cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 399 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.++.+.+ ..++++ |.+++|++|.+.++. .+++++...+...+..
T Consensus 411 aa~~L~~--~al~VNP~d~~~~A~ai~~AL~M---~~~Er~~r~~~~~~~v 456 (474)
T PF00982_consen 411 AAEQLSE--AALLVNPWDIEEVADAIHEALTM---PPEERKERHARLREYV 456 (474)
T ss_dssp GGGT-TT--S-EEE-TT-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC--ccEEECCCChHHHHHHHHHHHcC---CHHHHHHHHHHHHHHh
Confidence 8887743 226665 899999999999997 4566665555555545
No 116
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.57 E-value=7.2e-06 Score=83.15 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=54.5
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc------ccceecCCceEEeC-
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI------EELVKVDKNGLLFS- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~------~e~i~~~~~G~~~~- 413 (473)
+|+.+.+. .+ +++..++..||++|. .+.. .++.|++++|+|+|..+..+. ...+.+.+.|...+
T Consensus 229 ~~v~~~~~-~~-~~~~~~l~~ad~vI~---~~G~----~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~ 299 (321)
T TIGR00661 229 ENVEIRRI-TT-DNFKELIKNAELVIT---HGGF----SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299 (321)
T ss_pred CCEEEEEC-Ch-HHHHHHHHhCCEEEE---CCCh----HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh
Confidence 58998875 54 789999999999998 3322 268999999999999986543 23466667777765
Q ss_pred -CHHHHHHHHHHHHh
Q 011979 414 -SSSELADQLLMLFK 427 (473)
Q Consensus 414 -~~~~la~~i~~l~~ 427 (473)
+. ++.+.+...++
T Consensus 300 ~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 300 KEL-RLLEAILDIRN 313 (321)
T ss_pred hhH-HHHHHHHhccc
Confidence 34 44444444443
No 117
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=3.5e-05 Score=78.76 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=159.5
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+|++|+-- .+..++.+++...++|+..---+.. .+....-.- .-.+.....|+..++.|+..++
T Consensus 91 ~kPD~VlVhGDT--~t~lA~alaa~~~~IpV~HvEAGlR-------t~~~~~PEE---~NR~l~~~~S~~hfapte~ar~ 158 (383)
T COG0381 91 EKPDLVLVHGDT--NTTLAGALAAFYLKIPVGHVEAGLR-------TGDLYFPEE---INRRLTSHLSDLHFAPTEIARK 158 (383)
T ss_pred hCCCEEEEeCCc--chHHHHHHHHHHhCCceEEEecccc-------cCCCCCcHH---HHHHHHHHhhhhhcCChHHHHH
Confidence 899999999842 2333568888899999876443331 111110000 1123445578999999999999
Q ss_pred HHHHHhCCceE-EeeCCCC--CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC
Q 011979 180 ELAQNWGIKAT-VLYDQPP--EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (473)
Q Consensus 180 ~l~~~~g~~~~-vi~n~~~--~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
.|.+. |.+-. ++-.|.+ +..... +.+.. .+++..... ....+
T Consensus 159 nLl~E-G~~~~~IfvtGnt~iDal~~~--------~~~~~---------------------~~~~~~~~~-----~~~~~ 203 (383)
T COG0381 159 NLLRE-GVPEKRIFVTGNTVIDALLNT--------RDRVL---------------------EDSKILAKG-----LDDKD 203 (383)
T ss_pred HHHHc-CCCccceEEeCChHHHHHHHH--------Hhhhc---------------------cchhhHHhh-----hcccc
Confidence 99884 77632 3333322 211111 00000 000000000 01223
Q ss_pred CCeEEEEEeeccCC-CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHH
Q 011979 257 RPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (473)
Q Consensus 257 ~~~~i~~~G~~~~~-K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~ 335 (473)
+..+++..=|-... +++..+.+++..+.++ ++++.++.--.. ...+++..
T Consensus 204 ~~~iLvT~HRreN~~~~~~~i~~al~~i~~~---------------------------~~~~~viyp~H~--~~~v~e~~ 254 (383)
T COG0381 204 KKYILVTAHRRENVGEPLEEICEALREIAEE---------------------------YPDVIVIYPVHP--RPRVRELV 254 (383)
T ss_pred CcEEEEEcchhhcccccHHHHHHHHHHHHHh---------------------------CCCceEEEeCCC--ChhhhHHH
Confidence 33355544443332 7888999999988873 567766654432 24455555
Q ss_pred -HHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCccccceecCCceEEe
Q 011979 336 -RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGLLF 412 (473)
Q Consensus 336 -~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~~e~i~~~~~G~~~ 412 (473)
+.++- ++|.++.+ +...++..+++.|-+.+- .|.+ ..=||-..|+||++-. ...-+|.+.. ++-.++
T Consensus 255 ~~~L~~~~~v~li~p-l~~~~f~~L~~~a~~ilt---DSGg-----iqEEAp~lg~Pvl~lR~~TERPE~v~a-gt~~lv 324 (383)
T COG0381 255 LKRLKNVERVKLIDP-LGYLDFHNLMKNAFLILT---DSGG-----IQEEAPSLGKPVLVLRDTTERPEGVEA-GTNILV 324 (383)
T ss_pred HHHhCCCCcEEEeCC-cchHHHHHHHHhceEEEe---cCCc-----hhhhHHhcCCcEEeeccCCCCccceec-CceEEe
Confidence 55554 68999998 999999999999966664 4444 5679999999999985 5566676644 344445
Q ss_pred C-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 413 S-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 413 ~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+ +.+.+.+.+..++++ ++.+++|++..--+.
T Consensus 325 g~~~~~i~~~~~~ll~~----~~~~~~m~~~~npYg 356 (383)
T COG0381 325 GTDEENILDAATELLED----EEFYERMSNAKNPYG 356 (383)
T ss_pred CccHHHHHHHHHHHhhC----hHHHHHHhcccCCCc
Confidence 4 789999999999995 788888877665544
No 118
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.55 E-value=3.2e-05 Score=81.95 Aligned_cols=169 Identities=7% Similarity=0.039 Sum_probs=118.9
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC---------hHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD---------KES 330 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~---------~~~ 330 (473)
+++.+.|++.-||+..=++|+..+.++ .|.-..++.|+-+..... +.+
T Consensus 257 lilgVDRLDytKGi~~rl~Afe~fL~~-----------------------~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~ 313 (474)
T PRK10117 257 NIFSVERLDYSKGLPERFLAYEALLEK-----------------------YPQHHGKIRYTQIAPTSRGDVQAYQDIRHQ 313 (474)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHh-----------------------ChhhcCCEEEEEEcCCCCCccHHHHHHHHH
Confidence 889999999999999999999988763 111223566776653211 133
Q ss_pred HHHHHHHcCC-------CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC-----cEEEeccCc
Q 011979 331 YEEKIRRLRL-------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-----PVCAVSYSC 398 (473)
Q Consensus 331 l~~~~~~~~l-------~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~-----PvI~~~~~~ 398 (473)
+++++.+.+- .-|.++..-++++++..+|+.||++++ ++..+|+-++..||.||-. ++|-|...|
T Consensus 314 v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lV---TplRDGMNLVAkEyva~q~~~~~GvLILSefAG 390 (474)
T PRK10117 314 LETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV---TPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG 390 (474)
T ss_pred HHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEe---cccccccccccchheeeecCCCCccEEEecccc
Confidence 4444444432 126666555899999999999999999 8999999999999999976 377788888
Q ss_pred cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc---ccchHHHHHHHH
Q 011979 399 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL---SARWATEWEEHA 460 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~~~~~~ 460 (473)
.++.+. ..++++ |.+++|++|.+.+.. .++++++-.+...+... ...|.+..-+-+
T Consensus 391 aA~~L~---~AllVNP~d~~~~A~Ai~~AL~M---p~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L 451 (474)
T PRK10117 391 AANELT---SALIVNPYDRDEVAAALDRALTM---PLAERISRHAEMLDVIVKNDINHWQECFISDL 451 (474)
T ss_pred hHHHhC---CCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Confidence 887773 356776 899999999999997 45555544444444442 234555544333
No 119
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.54 E-value=2.7e-05 Score=80.43 Aligned_cols=310 Identities=16% Similarity=0.178 Sum_probs=171.4
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEE-EEeecCCCCCCCCcchhHHHHHHHHHHHHH
Q 011979 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHI-HTMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (473)
Q Consensus 10 ~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (473)
++.|.-.|.---...+..|-++ +-++.+++-.+.... ..|++. ..+. ....-+..-..+.+..+.+...+.
T Consensus 3 i~AGE~SGD~~ga~Li~~Lk~~-~p~~~~~GvGG~~M~-----~~G~~~l~d~~--~lsvmG~~Evl~~l~~~~~~~~~~ 74 (373)
T PF02684_consen 3 ISAGEASGDLHGARLIRALKAR-DPDIEFYGVGGPRMQ-----AAGVESLFDME--ELSVMGFVEVLKKLPKLKRLFRKL 74 (373)
T ss_pred EEeeCccHHHHHHHHHHHHHhh-CCCcEEEEEechHHH-----hCCCceecchH--HhhhccHHHHHHHHHHHHHHHHHH
Confidence 3445443333333445566665 557888876655432 124332 2222 111112222222233333333221
Q ss_pred HHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhC-CCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcC
Q 011979 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (473)
Q Consensus 89 ~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 167 (473)
. ..+ +..+||+++.-+.|.+..- +++.+++.. ++|+||.+-.--| .++.+ . -+.+.+..
T Consensus 75 ~----~~~-~~~~pd~vIlID~pgFNlr-lak~lk~~~~~~~viyYI~PqvW-----AWr~~-R--------~~~i~~~~ 134 (373)
T PF02684_consen 75 V----ERI-KEEKPDVVILIDYPGFNLR-LAKKLKKRGIPIKVIYYISPQVW-----AWRPG-R--------AKKIKKYV 134 (373)
T ss_pred H----HHH-HHcCCCEEEEeCCCCccHH-HHHHHHHhCCCceEEEEECCcee-----eeCcc-H--------HHHHHHHH
Confidence 1 111 3489999988776666555 344444332 3447775543311 11111 1 12334578
Q ss_pred CEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccc
Q 011979 168 NGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLA 247 (473)
Q Consensus 168 d~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (473)
|.++|+=+...+++++ .|.+++.+-+.-.+...+... +...++.
T Consensus 135 D~ll~ifPFE~~~y~~-~g~~~~~VGHPl~d~~~~~~~--~~~~~~~--------------------------------- 178 (373)
T PF02684_consen 135 DHLLVIFPFEPEFYKK-HGVPVTYVGHPLLDEVKPEPD--RAEAREK--------------------------------- 178 (373)
T ss_pred hheeECCcccHHHHhc-cCCCeEEECCcchhhhccCCC--HHHHHHh---------------------------------
Confidence 9999999999988876 587755554432232222211 1111111
Q ss_pred ccccccCCCCCeEEEEEeeccC--CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC
Q 011979 248 GIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 325 (473)
Q Consensus 248 ~~~~~~~~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 325 (473)
.+++++|.+.+.-|+=.. .+....++++++.+.++ .|++++++....
T Consensus 179 ----~l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~---------------------------~p~l~fvvp~a~ 227 (373)
T PF02684_consen 179 ----LLDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQ---------------------------RPDLQFVVPVAP 227 (373)
T ss_pred ----cCCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeEEEEecCC
Confidence 134556767777776433 35678899999999884 799999998765
Q ss_pred CChHH-HHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cC------
Q 011979 326 PDKES-YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YS------ 397 (473)
Q Consensus 326 ~~~~~-l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~------ 397 (473)
...+. +++..+..+. .+.+.- ...+-.+.++.||+.+. . .|++.+|++.+|+|.|+.- .+
T Consensus 228 ~~~~~~i~~~~~~~~~-~~~~~~---~~~~~~~~m~~ad~al~---~-----SGTaTLE~Al~g~P~Vv~Yk~~~lt~~i 295 (373)
T PF02684_consen 228 EVHEELIEEILAEYPP-DVSIVI---IEGESYDAMAAADAALA---A-----SGTATLEAALLGVPMVVAYKVSPLTYFI 295 (373)
T ss_pred HHHHHHHHHHHHhhCC-CCeEEE---cCCchHHHHHhCcchhh---c-----CCHHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 44433 4455555443 233321 14677889999999998 3 3569999999999999873 32
Q ss_pred ----------ccccceecCCceEEe----C--CHHHHHHHHHHHHhC
Q 011979 398 ----------CIEELVKVDKNGLLF----S--SSSELADQLLMLFKG 428 (473)
Q Consensus 398 ----------~~~e~i~~~~~G~~~----~--~~~~la~~i~~l~~~ 428 (473)
++..++.+.. ++- + +++.+++.+..++.+
T Consensus 296 ak~lvk~~~isL~Niia~~~--v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 296 AKRLVKVKYISLPNIIAGRE--VVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred HHHhhcCCEeechhhhcCCC--cchhhhcccCCHHHHHHHHHHHhcC
Confidence 2223332111 111 1 589999999999886
No 120
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.52 E-value=1.2e-05 Score=82.55 Aligned_cols=252 Identities=19% Similarity=0.189 Sum_probs=135.2
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCc-hHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRS-HFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||+|++++-. . ..+++.+++...++|++ ++|.-.. -+..+ +. .-......+.+.|+..+|.++..+
T Consensus 66 ~~Pd~Vlv~GD~-~-~~la~alaA~~~~ipv~-HieaGlR------s~d~~~g~--~de~~R~~i~~la~lhf~~t~~~~ 134 (346)
T PF02350_consen 66 EKPDAVLVLGDR-N-EALAAALAAFYLNIPVA-HIEAGLR------SGDRTEGM--PDEINRHAIDKLAHLHFAPTEEAR 134 (346)
T ss_dssp HT-SEEEEETTS-H-HHHHHHHHHHHTT-EEE-EES-----------S-TTSST--THHHHHHHHHHH-SEEEESSHHHH
T ss_pred cCCCEEEEEcCC-c-hHHHHHHHHHHhCCCEE-EecCCCC------ccccCCCC--chhhhhhhhhhhhhhhccCCHHHH
Confidence 789999999843 3 33357788889999954 4543310 00111 11 011223345568999999999999
Q ss_pred HHHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC
Q 011979 179 HELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (473)
Q Consensus 179 ~~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
+.|.+ .|.+ -.+...|.+ ..+.-...+..... .+. ...+.....+
T Consensus 135 ~~L~~-~G~~~~rI~~vG~~------~~D~l~~~~~~~~~------------------------~~~---~~~i~~~~~~ 180 (346)
T PF02350_consen 135 ERLLQ-EGEPPERIFVVGNP------GIDALLQNKEEIEE------------------------KYK---NSGILQDAPK 180 (346)
T ss_dssp HHHHH-TT--GGGEEE---H------HHHHHHHHHHTTCC-------------------------HH---HHHHHHCTTS
T ss_pred HHHHh-cCCCCCeEEEEChH------HHHHHHHhHHHHhh------------------------hhh---hHHHHhccCC
Confidence 99988 4775 344444432 00000000000000 000 0000001334
Q ss_pred CeEEEEEeeccCC---CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHH
Q 011979 258 PALVVSSTSWTPD---EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYE 332 (473)
Q Consensus 258 ~~~i~~~G~~~~~---K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~ 332 (473)
+++++..=+.+.. .....+.++++.+.++ +++.+++..... ....+.
T Consensus 181 ~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~----------------------------~~~~vi~~~hn~p~~~~~i~ 232 (346)
T PF02350_consen 181 PYILVTLHPVTNEDNPERLEQILEALKALAER----------------------------QNVPVIFPLHNNPRGSDIII 232 (346)
T ss_dssp EEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH----------------------------TTEEEEEE--S-HHHHHHHH
T ss_pred CEEEEEeCcchhcCChHHHHHHHHHHHHHHhc----------------------------CCCcEEEEecCCchHHHHHH
Confidence 4455544333222 3356677777777662 678888888632 234455
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCccccceecCCceEE
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGLL 411 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~~e~i~~~~~G~~ 411 (473)
+.++++ +++.+..+ +++.++..+++.|++.|- .|++ ..-||..+|+|||... .+.-.+.+..+.+-+
T Consensus 233 ~~l~~~--~~v~~~~~-l~~~~~l~ll~~a~~vvg---dSsG-----I~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl- 300 (346)
T PF02350_consen 233 EKLKKY--DNVRLIEP-LGYEEYLSLLKNADLVVG---DSSG-----IQEEAPSLGKPVVNIRDSGERQEGRERGSNVL- 300 (346)
T ss_dssp HHHTT---TTEEEE-----HHHHHHHHHHESEEEE---SSHH-----HHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-
T ss_pred HHhccc--CCEEEECC-CCHHHHHHHHhcceEEEE---cCcc-----HHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-
Confidence 555555 49999998 999999999999999997 4433 4459999999999994 566667666666555
Q ss_pred eC-CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011979 412 FS-SSSELADQLLMLFKGFPDDSDVLKKLR 440 (473)
Q Consensus 412 ~~-~~~~la~~i~~l~~~~~~~~~~~~~~~ 440 (473)
++ |.+++.++|.+++++ ++.+.++.
T Consensus 301 v~~~~~~I~~ai~~~l~~----~~~~~~~~ 326 (346)
T PF02350_consen 301 VGTDPEAIIQAIEKALSD----KDFYRKLK 326 (346)
T ss_dssp ETSSHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHhC----hHHHHhhc
Confidence 65 899999999999984 44444443
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=5.5e-05 Score=81.89 Aligned_cols=248 Identities=12% Similarity=0.081 Sum_probs=144.3
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhC-CCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (473)
..+||+++.-+.|.+..- +++.+++.. ++|+||.+-.--| ..+++ . -+.+.+..|+++|+=+..
T Consensus 308 ~~kPD~vIlID~PgFNlr-LAK~lkk~Gi~ipviyYVsPqVW-----AWR~~-R--------ikki~k~vD~ll~IfPFE 372 (608)
T PRK01021 308 KTNPRTVICIDFPDFHFL-LIKKLRKRGYKGKIVHYVCPSIW-----AWRPK-R--------KTILEKYLDLLLLILPFE 372 (608)
T ss_pred hcCCCEEEEeCCCCCCHH-HHHHHHhcCCCCCEEEEECccce-----eeCcc-h--------HHHHHHHhhhheecCccC
Confidence 378999998776666655 355555442 2588875544321 11111 1 123446789999999999
Q ss_pred HHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC
Q 011979 178 QHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (473)
Q Consensus 178 ~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
.+++++ .|.+++.+-+.-.+...... .+.+.+++++ ++++.
T Consensus 373 ~~~y~~-~gv~v~yVGHPL~d~i~~~~--~~~~~r~~lg------------------------------------l~~~~ 413 (608)
T PRK01021 373 QNLFKD-SPLRTVYLGHPLVETISSFS--PNLSWKEQLH------------------------------------LPSDK 413 (608)
T ss_pred HHHHHh-cCCCeEEECCcHHhhcccCC--CHHHHHHHcC------------------------------------CCCCC
Confidence 988876 68886665443223222111 2233444444 34455
Q ss_pred CeEEEEEeeccC--CCCHHHHHHHHH--HhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHH
Q 011979 258 PALVVSSTSWTP--DEDFGILLEAAL--MYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYE 332 (473)
Q Consensus 258 ~~~i~~~G~~~~--~K~~~~li~a~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~ 332 (473)
+.+.+.-|+=.. .+....+++|++ .+. ++.++++....+. .+.++
T Consensus 414 ~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~------------------------------~~l~fvvp~a~~~~~~~i~ 463 (608)
T PRK01021 414 PIVAAFPGSRRGDILRNLTIQVQAFLASSLA------------------------------STHQLLVSSANPKYDHLIL 463 (608)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHhc------------------------------cCeEEEEecCchhhHHHHH
Confidence 656666666432 356788888887 332 3577877543332 35566
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCccc-----------
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIE----------- 400 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~~----------- 400 (473)
+.++..++-.+.+... ++-.++++.||+.+. . .|++.+|++.+|+|.|+.- .+.+.
T Consensus 464 ~~~~~~~~~~~~ii~~----~~~~~~m~aaD~aLa---a-----SGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~ 531 (608)
T PRK01021 464 EVLQQEGCLHSHIVPS----QFRYELMRECDCALA---K-----CGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKII 531 (608)
T ss_pred HHHhhcCCCCeEEecC----cchHHHHHhcCeeee---c-----CCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhcc
Confidence 6665433213344422 234799999999998 3 3569999999999999862 22111
Q ss_pred -------cceecCC--ceEE---eC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 401 -------ELVKVDK--NGLL---FS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 401 -------e~i~~~~--~G~~---~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.++.+.. --++ .+ +++.+++.+ +++.+ ++.++++.+...+..
T Consensus 532 i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d----~~~r~~~~~~l~~lr 586 (608)
T PRK01021 532 LPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT----SQSKEKQKDACRDLY 586 (608)
T ss_pred CCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC----HHHHHHHHHHHHHHH
Confidence 1111111 1122 12 588899886 67764 666777666665544
No 122
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.29 E-value=0.00051 Score=78.27 Aligned_cols=163 Identities=7% Similarity=0.034 Sum_probs=113.5
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC----EEEEEEcCC-----CCh--
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKG-----PDK-- 328 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ivG~g-----~~~-- 328 (473)
+++.+.|+..-||+..=+.|+..+.++ +|. +.|+-+... ++.
T Consensus 341 ~ilgVDrlD~~KGi~~kl~A~e~~L~~---------------------------~P~~~gkvvlvQia~psr~~~~~y~~ 393 (854)
T PLN02205 341 MLLGVDDMDIFKGISLKLLAMEQLLMQ---------------------------HPEWQGKVVLVQIANPARGKGKDVKE 393 (854)
T ss_pred EEEEccCcccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEecCCCcccHHHHH
Confidence 899999999999999999999998763 444 456655432 221
Q ss_pred --HHHHHHHHHcCC-------CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC----------
Q 011979 329 --ESYEEKIRRLRL-------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL---------- 389 (473)
Q Consensus 329 --~~l~~~~~~~~l-------~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~---------- 389 (473)
.++++.+.+.+- .-|.++..-++.+++..+|+.||+++. ++..+|+-++..||.+|..
T Consensus 394 ~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lV---T~lRDGMNLva~Eyia~~~~~~~~~~~~~ 470 (854)
T PLN02205 394 VQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLV---TAVRDGMNLIPYEYIISRQGNEKLDKLLG 470 (854)
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEe---ccccccccccchheeEEccCccccccccc
Confidence 233444444332 236777555899999999999999999 8999999999999999864
Q ss_pred ---------cEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc---ccchHHH
Q 011979 390 ---------PVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL---SARWATE 455 (473)
Q Consensus 390 ---------PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~ 455 (473)
.+|.|...|.+..+. ..++++ |.+++|++|.+.+.. .+++++.-.+..+++.+ ...|.+.
T Consensus 471 ~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d~~~~a~ai~~AL~m---~~~Er~~R~~~~~~~v~~~d~~~W~~~ 544 (854)
T PLN02205 471 LEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWNIDAVADAMDSALEM---AEPEKQLRHEKHYRYVSTHDVGYWARS 544 (854)
T ss_pred cccccCCCCceEeeeccchhHHhC---cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 266677766666552 356665 799999999999997 34444433333333332 2446655
Q ss_pred HHH
Q 011979 456 WEE 458 (473)
Q Consensus 456 ~~~ 458 (473)
.-.
T Consensus 545 fl~ 547 (854)
T PLN02205 545 FLQ 547 (854)
T ss_pred HHH
Confidence 433
No 123
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=0.0017 Score=68.90 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=109.9
Q ss_pred eEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--h-------H
Q 011979 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--K-------E 329 (473)
Q Consensus 259 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~-------~ 329 (473)
.+++.+.|++.-||+..=+.|+..+.+. .|....++.++-++.... . .
T Consensus 283 kiivgvDRlDy~kGi~~rl~Afe~lL~~-----------------------~Pe~~~kvvliQi~~pSr~~v~~y~~~~~ 339 (486)
T COG0380 283 KLIVGVDRLDYSKGIPQRLLAFERLLEE-----------------------YPEWRGKVVLLQIAPPSREDVEEYQALRL 339 (486)
T ss_pred eEEEEehhcccccCcHHHHHHHHHHHHh-----------------------ChhhhCceEEEEecCCCccccHHHHHHHH
Confidence 3899999999999999999999988763 111234566777775432 1 2
Q ss_pred HHHHHHHHcC----C---CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC----cEEEeccCc
Q 011979 330 SYEEKIRRLR----L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCAVSYSC 398 (473)
Q Consensus 330 ~l~~~~~~~~----l---~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~----PvI~~~~~~ 398 (473)
.+++++.+.+ - .-|.++..-++.+++..+|+.||+++. ++..+|+-++..||.||-- |.|-|...|
T Consensus 340 ~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lV---tplrDGMNLvakEyVa~q~~~~G~LiLSeFaG 416 (486)
T COG0380 340 QIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLV---TPLRDGMNLVAKEYVAAQRDKPGVLILSEFAG 416 (486)
T ss_pred HHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeee---ccccccccHHHHHHHHhhcCCCCcEEEecccc
Confidence 2333333332 1 246666666899999999999999999 8899999999999999854 788888877
Q ss_pred cccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHH
Q 011979 399 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKK 438 (473)
Q Consensus 399 ~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~ 438 (473)
.+..+.+ .++++ |.++++++|.+.++. .++++++
T Consensus 417 aa~~L~~---AliVNP~d~~~va~ai~~AL~m---~~eEr~~ 452 (486)
T COG0380 417 AASELRD---ALIVNPWDTKEVADAIKRALTM---SLEERKE 452 (486)
T ss_pred chhhhcc---CEeECCCChHHHHHHHHHHhcC---CHHHHHH
Confidence 7777744 57776 799999999999987 4555544
No 124
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.18 E-value=0.00048 Score=70.34 Aligned_cols=274 Identities=19% Similarity=0.162 Sum_probs=147.3
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 011979 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (473)
Q Consensus 24 ~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 103 (473)
.+..|.++ ||+|.|.|..... ..++.+..|++...+..+ +.....+.+... .+...+. .+. +..+||
T Consensus 19 ~I~eL~~~-GheV~it~R~~~~-~~~LL~~yg~~y~~iG~~-----g~~~~~Kl~~~~----~R~~~l~-~~~-~~~~pD 85 (335)
T PF04007_consen 19 IIRELEKR-GHEVLITARDKDE-TEELLDLYGIDYIVIGKH-----GDSLYGKLLESI----ERQYKLL-KLI-KKFKPD 85 (335)
T ss_pred HHHHHHhC-CCEEEEEEeccch-HHHHHHHcCCCeEEEcCC-----CCCHHHHHHHHH----HHHHHHH-HHH-HhhCCC
Confidence 34566665 9999998865433 346777889999888722 111111222211 1111121 222 237899
Q ss_pred EEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHH
Q 011979 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQ 183 (473)
Q Consensus 104 vi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~ 183 (473)
++++.+.+. +..++...++|.|.-..+-.- . . ..+.....||.+++..-.-...+.+
T Consensus 86 v~is~~s~~------a~~va~~lgiP~I~f~D~e~a-~------~----------~~~Lt~Pla~~i~~P~~~~~~~~~~ 142 (335)
T PF04007_consen 86 VAISFGSPE------AARVAFGLGIPSIVFNDTEHA-I------A----------QNRLTLPLADVIITPEAIPKEFLKR 142 (335)
T ss_pred EEEecCcHH------HHHHHHHhCCCeEEEecCchh-h------c----------cceeehhcCCeeECCcccCHHHHHh
Confidence 999877322 234466778998875544310 0 0 0123335788888776555544444
Q ss_pred HhCCceEEe-eCCCC-----CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC
Q 011979 184 NWGIKATVL-YDQPP-----EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (473)
Q Consensus 184 ~~g~~~~vi-~n~~~-----~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
+|.+..+. |+|-. ..|.|. .++.++|| +. +.
T Consensus 143 -~G~~~~i~~y~G~~E~ayl~~F~Pd-----~~vl~~lg------------------------------------~~-~~ 179 (335)
T PF04007_consen 143 -FGAKNQIRTYNGYKELAYLHPFKPD-----PEVLKELG------------------------------------LD-DE 179 (335)
T ss_pred -cCCcCCEEEECCeeeEEeecCCCCC-----hhHHHHcC------------------------------------CC-CC
Confidence 67663344 66632 124443 23444444 11 22
Q ss_pred CeEEEEEeeccCCC------CHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 258 PALVVSSTSWTPDE------DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 258 ~~~i~~~G~~~~~K------~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
|.+++ |..+.+ .-+.+-+.++.+.+ ..+. ++++...++..
T Consensus 180 ~yIvv---R~~~~~A~y~~~~~~i~~~ii~~L~~----------------------------~~~~-vV~ipr~~~~~-- 225 (335)
T PF04007_consen 180 PYIVV---RPEAWKASYDNGKKSILPEIIEELEK----------------------------YGRN-VVIIPRYEDQR-- 225 (335)
T ss_pred CEEEE---EeccccCeeecCccchHHHHHHHHHh----------------------------hCce-EEEecCCcchh--
Confidence 32333 222211 12334455666655 2333 55665444322
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC---ccccceecCCc
Q 011979 332 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS---CIEELVKVDKN 408 (473)
Q Consensus 332 ~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~---~~~e~i~~~~~ 408 (473)
+..++++ +.+... .-+...++.-||++|- +. |+-..||...|+|.|.+-.+ +..+.+.+.
T Consensus 226 -~~~~~~~---~~i~~~---~vd~~~Ll~~a~l~Ig----~g----gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~~-- 288 (335)
T PF04007_consen 226 -ELFEKYG---VIIPPE---PVDGLDLLYYADLVIG----GG----GTMAREAALLGTPAISCFPGKLLAVDKYLIEK-- 288 (335)
T ss_pred -hHHhccC---ccccCC---CCCHHHHHHhcCEEEe----CC----cHHHHHHHHhCCCEEEecCCcchhHHHHHHHC--
Confidence 2333333 444433 4466689999999996 22 35789999999999987432 333444433
Q ss_pred eEEe--CCHHHHHHHHHHHHh
Q 011979 409 GLLF--SSSSELADQLLMLFK 427 (473)
Q Consensus 409 G~~~--~~~~~la~~i~~l~~ 427 (473)
|+++ .|++++.+.+.+...
T Consensus 289 Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 289 GLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred CCeEecCCHHHHHHHHHHhhh
Confidence 5555 478888886655443
No 125
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.15 E-value=0.0016 Score=70.47 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=62.3
Q ss_pred CcEEEecCCCCcccHHHHH--hcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecCCceEEeC-
Q 011979 341 KRVAFRTMWLSAEDYPLLL--GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKNGLLFS- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l--~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~~~G~~~~- 413 (473)
+||.+.+ |+|+.+ ++ ..++++|. .. | ...+.||+.+|+|+|+... ......+...+.|...+
T Consensus 346 ~Nv~i~~-w~Pq~~---lL~hp~v~~fIt---HG-G---~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~ 414 (507)
T PHA03392 346 ANVLTQK-WFPQRA---VLKHKNVKAFVT---QG-G---VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414 (507)
T ss_pred CceEEec-CCCHHH---HhcCCCCCEEEe---cC-C---cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc
Confidence 6888875 698865 55 45788886 22 2 1288999999999999863 33455566667787764
Q ss_pred ---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 414 ---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 414 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
+.+++.++|.+++++ +.-++..++-+..
T Consensus 415 ~~~t~~~l~~ai~~vl~~----~~y~~~a~~ls~~ 445 (507)
T PHA03392 415 VTVSAAQLVLAIVDVIEN----PKYRKNLKELRHL 445 (507)
T ss_pred CCcCHHHHHHHHHHHhCC----HHHHHHHHHHHHH
Confidence 589999999999985 4444444333333
No 126
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.14 E-value=0.00037 Score=70.13 Aligned_cols=333 Identities=15% Similarity=0.145 Sum_probs=168.6
Q ss_pred CCCCCeEEEEEe--cCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcc---h
Q 011979 1 MGRRGRACVVVL--GDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPK---V 74 (473)
Q Consensus 1 m~~~~~~~i~~~--~~~g~s~r~~~~a~~L~~~-~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~---~ 74 (473)
|.+++|++..+- -.+|+-.|....|.+|.+. .|.+|.+|+-. ++........||.+.++|.-....++... .
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~--~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~ 83 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGG--PPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDL 83 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCC--CccCCCCCcccCceEecCceEecCCCceeeeec
Confidence 345555554433 3467888999999999886 68999999843 22333334568999998832111111110 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhh--CCCeEEEEecCchhhhhhhhcCCCchH
Q 011979 75 LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHF 152 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~ 152 (473)
--.+....+...+ ++...+ +..+||++++...|.-.-.-+.-.+..+ ...+.+.-..+... ... .....+
T Consensus 84 ~~~l~e~~~~Rs~---lil~t~-~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D-~p~---~~~~~w 155 (400)
T COG4671 84 DGDLEETKKLRSQ---LILSTA-ETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRD-IPQ---ELEADW 155 (400)
T ss_pred CCCHHHHHHHHHH---HHHHHH-HhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhh-chh---hhccch
Confidence 1112333333333 222222 2378999999884432111111122222 23455554444311 000 001111
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc----eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccc
Q 011979 153 VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK----ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDC 228 (473)
Q Consensus 153 ~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~----~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 228 (473)
++ .-.+..+.++.|.|.+...-.-..+...|+.. .++.|.|-...-.+..
T Consensus 156 ~~--~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~------------------------ 209 (400)
T COG4671 156 RR--AETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHL------------------------ 209 (400)
T ss_pred hh--hHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCC------------------------
Confidence 11 12334444556777666444333333333332 2333333110000000
Q ss_pred cCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhcc
Q 011979 229 VSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 308 (473)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (473)
.......+....+++.+|.-. -|-+++..++.....
T Consensus 210 -------------------~~p~~~~pE~~~Ilvs~GGG~--dG~eLi~~~l~A~~~----------------------- 245 (400)
T COG4671 210 -------------------PLPPHEAPEGFDILVSVGGGA--DGAELIETALAAAQL----------------------- 245 (400)
T ss_pred -------------------CCCCcCCCccceEEEecCCCh--hhHHHHHHHHHHhhh-----------------------
Confidence 000011123334677766543 344444443333322
Q ss_pred CccccCCCE---EEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHH
Q 011979 309 GKQYLYPRL---LFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDM 384 (473)
Q Consensus 309 ~~~~~~~~~---~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Ea 384 (473)
.+++ -+++.|.---....+++...-.- ++|.+..+ ..++..++..|+..|. .+.+ +.+.|-
T Consensus 246 -----l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f---~~~~~~ll~gA~~vVS---m~GY----NTvCeI 310 (400)
T COG4671 246 -----LAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF---RNDFESLLAGARLVVS---MGGY----NTVCEI 310 (400)
T ss_pred -----CCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh---hhhHHHHHHhhheeee---cccc----hhhhHH
Confidence 1233 36677744333444444443332 79999999 9999999999999997 3322 388999
Q ss_pred HhcCCcEEEeccCccc--cceec---CCceE---EeC---CHHHHHHHHHHHHhC
Q 011979 385 FGCGLPVCAVSYSCIE--ELVKV---DKNGL---LFS---SSSELADQLLMLFKG 428 (473)
Q Consensus 385 ma~G~PvI~~~~~~~~--e~i~~---~~~G~---~~~---~~~~la~~i~~l~~~ 428 (473)
+++|||.+........ .++.- .+-|+ +.+ +++.++++|...++.
T Consensus 311 Ls~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 311 LSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred HhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 9999999998743222 22211 12333 333 488999999988874
No 127
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.0004 Score=70.63 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=91.7
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCC---CcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHH
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD---LPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSE 417 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~---~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~ 417 (473)
+++...|...+...++.+++..|+.+...+.+--++ +++.++|+++||.|.+++...++.....+++.-+++.|..+
T Consensus 237 ~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kd 316 (373)
T COG4641 237 PNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKD 316 (373)
T ss_pred chhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHH
Confidence 467777774556999999999999999533332222 48999999999999999998999999999888888899999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHH
Q 011979 418 LADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEW 456 (473)
Q Consensus 418 la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~ 456 (473)
+.+.+.+++.+ ++.++++.+.+.+.+ ..++.+...
T Consensus 317 l~~~~~yll~h----~~erkeiae~~ye~V~~~ht~~~r~ 352 (373)
T COG4641 317 LKEKLKYLLNH----PDERKEIAECAYERVLARHTYEERI 352 (373)
T ss_pred HHHHHHHHhcC----cchHHHHHHhhHHHHHHhccHHHHH
Confidence 99999999997 788999999998877 446655554
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.10 E-value=0.00022 Score=74.90 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=93.3
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
...++|.+++..|+.... ..+++.+-.... .-+.++++...+ ....
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~----------------------------~l~~~vi~~~~~-~~~~-- 278 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALA----------------------------DLDVRVIVSLGG-ARDT-- 278 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHh----------------------------cCCcEEEEeccc-cccc--
Confidence 355677788888888765 333333222221 124666776644 1111
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEecc----CccccceecC
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD 406 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~ 406 (473)
.-++ .|+...+. +|+.+ ++..||++|+ .+ .+ .+.|++.+|+|+|+-.. ...++.+.+-
T Consensus 279 ----~~~~p~n~~v~~~-~p~~~---~l~~ad~vI~---hGG~g-----tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~ 342 (406)
T COG1819 279 ----LVNVPDNVIVADY-VPQLE---LLPRADAVIH---HGGAG-----TTSEALYAGVPLVVIPDGADQPLNAERVEEL 342 (406)
T ss_pred ----cccCCCceEEecC-CCHHH---HhhhcCEEEe---cCCcc-----hHHHHHHcCCCEEEecCCcchhHHHHHHHHc
Confidence 1224 58888876 76655 8999999998 33 33 88999999999999853 3456777788
Q ss_pred CceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 407 KNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 407 ~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.|.... +.+.+++++.+++.+ +..++..++....+.
T Consensus 343 G~G~~l~~~~l~~~~l~~av~~vL~~----~~~~~~~~~~~~~~~ 383 (406)
T COG1819 343 GAGIALPFEELTEERLRAAVNEVLAD----DSYRRAAERLAEEFK 383 (406)
T ss_pred CCceecCcccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHhh
Confidence 8897764 599999999999995 555555444444444
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0036 Score=66.75 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=105.0
Q ss_pred CCCEEEEEEcCCCCh---HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC
Q 011979 314 YPRLLFIITGKGPDK---ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 388 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~---~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G 388 (473)
.|+-.|++-|.|++. ..+++.+++.|+ +++.|.++ .|.++....|.-||+++= ++-.+=.++.+|++-+|
T Consensus 457 vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~-~~~~~h~a~~~iADlvLD----TyPY~g~TTa~daLwm~ 531 (620)
T COG3914 457 VPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP-APNEDHRARYGIADLVLD----TYPYGGHTTASDALWMG 531 (620)
T ss_pred CCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC-CCCHHHHHhhchhheeee----cccCCCccchHHHHHhc
Confidence 689999999987653 678889999999 69999999 999999999999999995 43333456899999999
Q ss_pred CcEEEeccC------ccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchH-HHHHHHH
Q 011979 389 LPVCAVSYS------CIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWA-TEWEEHA 460 (473)
Q Consensus 389 ~PvI~~~~~------~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~-~~~~~~~ 460 (473)
+||++-... |..-+-.-|..-+++.|.++..+.-..+-++ +..+.+.+...++-.+. -=|+ ..+.+-+
T Consensus 532 vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~d----ral~q~~r~~l~~~r~tspL~d~~~far~l 607 (620)
T COG3914 532 VPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSD----RALRQQVRAELKRSRQTSPLFDPKAFARKL 607 (620)
T ss_pred CceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhccc----HHHHHhhHHHHHhccccCcccCHHHHHHHH
Confidence 999986421 1111112233445666777777776767664 66666666655553311 1244 4556677
Q ss_pred HHHHHHHhhcc
Q 011979 461 KPLITEVISQF 471 (473)
Q Consensus 461 ~~~~~~~~~~~ 471 (473)
..++.++.++.
T Consensus 608 e~~y~~M~~~y 618 (620)
T COG3914 608 ETLYWGMWSEY 618 (620)
T ss_pred HHHHHHHHHhh
Confidence 88888877764
No 130
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.02 E-value=0.00022 Score=75.44 Aligned_cols=177 Identities=12% Similarity=0.077 Sum_probs=107.3
Q ss_pred cccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC-ChH
Q 011979 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP-DKE 329 (473)
Q Consensus 251 ~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~-~~~ 329 (473)
..++++. ++++...++ .|--+..++++..+.++ .|+.+|++...+. ..+
T Consensus 279 ~gLp~d~-vvF~~fn~~--~KI~p~~l~~W~~IL~~---------------------------vP~S~L~L~~~~~~~~~ 328 (468)
T PF13844_consen 279 YGLPEDA-VVFGSFNNL--FKISPETLDLWARILKA---------------------------VPNSRLWLLRFPASGEA 328 (468)
T ss_dssp GT--SSS-EEEEE-S-G--GG--HHHHHHHHHHHHH---------------------------STTEEEEEEETSTTHHH
T ss_pred cCCCCCc-eEEEecCcc--ccCCHHHHHHHHHHHHh---------------------------CCCcEEEEeeCCHHHHH
Confidence 3444443 244444444 46667778888887774 6999998876543 346
Q ss_pred HHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccc------
Q 011979 330 SYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE------ 401 (473)
Q Consensus 330 ~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e------ 401 (473)
.+++.+++.|+ +++.|.+. .+.++....++.+|+++=++ |..| ++..+||+.+|+|||+-....+..
T Consensus 329 ~l~~~~~~~Gv~~~Ri~f~~~-~~~~ehl~~~~~~DI~LDT~-p~nG---~TTt~dALwmGVPvVTl~G~~~~sR~~aSi 403 (468)
T PF13844_consen 329 RLRRRFAAHGVDPDRIIFSPV-APREEHLRRYQLADICLDTF-PYNG---GTTTLDALWMGVPVVTLPGETMASRVGASI 403 (468)
T ss_dssp HHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--S-SS-----SHHHHHHHHHT--EEB---SSGGGSHHHHH
T ss_pred HHHHHHHHcCCChhhEEEcCC-CCHHHHHHHhhhCCEEeeCC-CCCC---cHHHHHHHHcCCCEEeccCCCchhHHHHHH
Confidence 78888999999 69999987 88889999999999999731 1122 679999999999999975322211
Q ss_pred ceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHH
Q 011979 402 LVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG--LSARWATEWEEHAKPLITE 466 (473)
Q Consensus 402 ~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~ 466 (473)
+-.-|-.-+++.|.++..+.-.++..+ ++.++++++..++.. +...=...|-+.++..+..
T Consensus 404 L~~lGl~ElIA~s~~eYv~~Av~La~D----~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 404 LRALGLPELIADSEEEYVEIAVRLATD----PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp HHHHT-GGGB-SSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred HHHcCCchhcCCCHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 111122345667899999999999995 889999988887644 1122223444444444443
No 131
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.95 E-value=0.021 Score=61.07 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=69.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
+..++++..++ ...+.+... +++.+. .|+|+.+ +|...++..+. +++. .++++||+++|+|+|+..
T Consensus 303 ~~~~lw~~~~~-~~~~~~~~~----~~~~v~-~w~pQ~~---iL~h~~v~~fv---tHgG--~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 303 GVRFLWVARGE-ASRLKEICG----DMGLVV-PWCDQLK---VLCHSSVGGFW---THCG--WNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred CCCEEEEEcCc-hhhHhHhcc----CCEEEe-ccCCHHH---HhccCccceEE---ecCc--hhHHHHHHHcCCCEEecc
Confidence 45777765543 222333221 367677 4798876 45567774442 2221 238999999999999986
Q ss_pred c----CccccceecC-CceEEe---------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 396 Y----SCIEELVKVD-KNGLLF---------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 396 ~----~~~~e~i~~~-~~G~~~---------~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
. ......+.+. +.|+-. -+.+++++++.+++.+ +.++.++|++++.+..
T Consensus 369 ~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~---~~~~~~~~r~~a~~~~ 431 (459)
T PLN02448 369 LFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDL---ESEEGKEMRRRAKELQ 431 (459)
T ss_pred ccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 3 2333444332 445544 1578999999999975 2244556777776654
No 132
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.93 E-value=0.0031 Score=63.00 Aligned_cols=230 Identities=15% Similarity=0.146 Sum_probs=133.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+.+-+++|+-.. +.+..+.+..+.+ +-=+.||-++-.++ -...+...+++..+.+...++..+|+++.....-
T Consensus 38 ~r~~rff~HGqFn-~~lwlall~g~~~--~~q~yWhiWGaDLY---e~~~~lk~rlfy~lRR~aq~rvg~v~atrGD~~~ 111 (322)
T PRK02797 38 NRAQRFFLHGQFN-PTLWLALLSGKIK--PKQFYWHIWGADLY---EESKGLKFRLFYPLRRLAQKRVGHVFATRGDLSY 111 (322)
T ss_pred CccceEEEecCCC-HHHHHHHHhCCcC--ccceEEEEEChhhh---hcccchhHHHHHHHHHHHHhhcCeEEEecchHHH
Confidence 6778888888443 2222233332222 22345665553332 1123444567778889988999999994444443
Q ss_pred HHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCe
Q 011979 180 ELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPA 259 (473)
Q Consensus 180 ~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (473)
+-++.++++...++- |+.......... ....+..+.
T Consensus 112 ~a~~~~~v~~~llyf-------pt~m~~~l~~~~-------------------------------------~~~~~~~~~ 147 (322)
T PRK02797 112 FAQRHPKVPGSLLYF-------PTRMDPSLNTMA-------------------------------------NDRQRAGKM 147 (322)
T ss_pred HHHhcCCCCccEEec-------CCcchhhhcccc-------------------------------------ccccCCCce
Confidence 345666777554332 111100000000 001122333
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCC--C--ChHHHHHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKG--P--DKESYEEK 334 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g--~--~~~~l~~~ 334 (473)
.|+..-+-++..++..++++++.. ...++++++. |.+ . +.+++++.
T Consensus 148 tIlvGNSgd~SN~Hie~L~~l~~~-----------------------------~~~~v~ii~PlsYp~gn~~Yi~~V~~~ 198 (322)
T PRK02797 148 TILVGNSGDRSNRHIEALRALHQQ-----------------------------FGDNVKIIVPMGYPANNQAYIEEVRQA 198 (322)
T ss_pred EEEEeCCCCCcccHHHHHHHHHHH-----------------------------hCCCeEEEEECCcCCCCHHHHHHHHHH
Confidence 444444455666676666666665 3467887765 442 2 22445555
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-CccccceecCCceEEe
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDKNGLLF 412 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i~~~~~G~~~ 412 (473)
++++-- +++..+...+|.+|+.++++.+|++++.+ ....++|+ +.=.+..|+||+.+.. +-..++. +.+.-+++
T Consensus 199 ~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~--~RQQgiGn-l~lLi~~G~~v~l~r~n~fwqdl~-e~gv~Vlf 274 (322)
T PRK02797 199 GLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIF--ARQQGIGT-LCLLIQLGKPVVLSRDNPFWQDLT-EQGLPVLF 274 (322)
T ss_pred HHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEee--chhhHHhH-HHHHHHCCCcEEEecCCchHHHHH-hCCCeEEe
Confidence 555544 68988888899999999999999999953 35666775 4557899999999964 4445544 33444444
No 133
>PLN02208 glycosyltransferase family protein
Probab=97.90 E-value=0.051 Score=57.83 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=71.4
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEeC---
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~~--- 413 (473)
++.+. .|+|+.+ +|+...+..+ -+++. -++++||+++|+|+|+... ......+ ..-+.|+..+
T Consensus 312 g~~v~-~W~PQ~~---iL~H~~v~~F---vtHcG--~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~ 382 (442)
T PLN02208 312 GVVWG-GWVQQPL---ILDHPSIGCF---VNHCG--PGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK 382 (442)
T ss_pred CcEee-ccCCHHH---HhcCCccCeE---EccCC--chHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc
Confidence 45554 5799877 6777877666 23321 2499999999999999863 2233433 3346676662
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 011979 414 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 467 (473)
Q Consensus 414 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 467 (473)
+.++++++|.+++++ +.+..+++++++++..+...=.-+=...+..+++++
T Consensus 383 ~~~~~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 383 TGWFSKESLSNAIKSVMDK---DSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred CCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 578999999999975 235567788877765522210111222355665555
No 134
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.79 E-value=0.077 Score=56.53 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=61.6
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecC-CceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~-~~G~~~~-- 413 (473)
+++.+. .|+|+.+ +|...++..+. +++. .++++||+++|+|+|+... ......+.+. +.|+-..
T Consensus 317 ~~~~i~-~W~PQ~~---iL~H~~v~~Fv---tHcG--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~ 387 (449)
T PLN02173 317 DKSLVL-KWSPQLQ---VLSNKAIGCFM---THCG--WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAE 387 (449)
T ss_pred CceEEe-CCCCHHH---HhCCCccceEE---ecCc--cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeec
Confidence 467777 4899766 67777766652 3221 2499999999999999863 3344445432 4555541
Q ss_pred ------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 414 ------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 414 ------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.+++++++.+++.+ + +.+++++++++..
T Consensus 388 ~~~~~~~~e~v~~av~~vm~~----~-~~~~~r~~a~~~~ 422 (449)
T PLN02173 388 KESGIAKREEIEFSIKEVMEG----E-KSKEMKENAGKWR 422 (449)
T ss_pred ccCCcccHHHHHHHHHHHhcC----C-hHHHHHHHHHHHH
Confidence 578999999999975 2 2356666666544
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.78 E-value=0.034 Score=58.86 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=65.7
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecC
Q 011979 332 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVD 406 (473)
Q Consensus 332 ~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~ 406 (473)
++..+.+.- .+++++....+..++..+++++|++|- ..-+ .++=|+++|+|+|+-.+. ++.+.+.-
T Consensus 297 ~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig----~RlH----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~- 367 (426)
T PRK10017 297 LNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVG----TRLH----SAIISMNFGTPAIAINYEHKSAGIMQQLGL- 367 (426)
T ss_pred HHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEE----ecch----HHHHHHHcCCCEEEeeehHHHHHHHHHcCC-
Confidence 444455443 344443221456688899999999996 3333 678899999999998743 33333322
Q ss_pred CceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 407 KNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 407 ~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
..++.+ +.+++.+.+.+++++ .++.++++.++..+..
T Consensus 368 -~~~~~~~~~l~~~~Li~~v~~~~~~---r~~~~~~l~~~v~~~r 408 (426)
T PRK10017 368 -PEMAIDIRHLLDGSLQAMVADTLGQ---LPALNARLAEAVSRER 408 (426)
T ss_pred -ccEEechhhCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH
Confidence 223332 477899999999986 3445556666666644
No 136
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.70 E-value=0.0016 Score=66.89 Aligned_cols=184 Identities=13% Similarity=0.034 Sum_probs=106.3
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhC-CCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||+++.-+.|.+... +++.+++.. ++|++|.+-.--| .++. ... +.+.+.+|.++|+=+...
T Consensus 75 ~~pd~~i~iD~p~Fnl~-lak~~k~~~~~i~viyyi~PqvW-----AWr~-~R~--------~~i~k~~d~vl~ifPFE~ 139 (347)
T PRK14089 75 KQADKVLLMDSSSFNIP-LAKKIKKAYPKKEIIYYILPQVW-----AWKK-GRA--------KILEKYCDFLASILPFEV 139 (347)
T ss_pred cCCCEEEEeCCCCCCHH-HHHHHHhcCCCCCEEEEECccce-----eeCc-chH--------HHHHHHHhhhhccCCCCH
Confidence 78999988776766655 455555543 7999886554322 1111 111 233456777777665444
Q ss_pred HHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCC
Q 011979 179 HELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (473)
Q Consensus 179 ~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (473)
+.+ |.+++++-+...+...+. +. .+. +.|
T Consensus 140 ~~y----g~~~~~VGhPl~d~~~~~----~~------------------------------------------~~~-~~~ 168 (347)
T PRK14089 140 QFY----QSKATYVGHPLLDEIKEF----KK------------------------------------------DLD-KEG 168 (347)
T ss_pred HHh----CCCCEEECCcHHHhhhhh----hh------------------------------------------hcC-CCC
Confidence 444 666554422111111000 00 011 124
Q ss_pred eEEEEEeeccC--CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHH
Q 011979 259 ALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (473)
Q Consensus 259 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~ 336 (473)
.+.+.-||-.. .+....+++++..+.++ ...+++.|... .+.+++...
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~-----------------------------~~~~~i~~a~~-~~~i~~~~~ 218 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGK-----------------------------EKILVVPSFFK-GKDLKEIYG 218 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhc-----------------------------CcEEEEeCCCc-HHHHHHHHh
Confidence 57777777543 24566777888887651 26788887643 345555544
Q ss_pred HcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 337 ~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
+. ..+.+. ++..++++.||+.++ .| |++.+|++.+|+|.|..-
T Consensus 219 ~~--~~~~~~------~~~~~~m~~aDlal~---~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 219 DI--SEFEIS------YDTHKALLEAEFAFI---CS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred cC--CCcEEe------ccHHHHHHhhhHHHh---cC-----cHHHHHHHHhCCCEEEEE
Confidence 32 234443 255789999999997 32 447779999999999964
No 137
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.60 E-value=0.026 Score=57.30 Aligned_cols=246 Identities=16% Similarity=0.171 Sum_probs=138.5
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+.+-++.|+-... .+..+.+..+.+..+ +.||-++-.++. ...+...+++..+.+.+.++..+|++ ++..-
T Consensus 76 ~~r~~kff~HGqFn~-~lwlaLl~g~~~~~k--~~WhIWGaDLYe---~~~~~k~rlfy~lRr~aq~rvg~V~a-t~GDl 148 (360)
T PF07429_consen 76 ADRADKFFLHGQFNP-WLWLALLFGKIKLKK--CYWHIWGADLYE---DSRSLKFRLFYFLRRLAQKRVGHVFA-TRGDL 148 (360)
T ss_pred hCccceEEEeccCcH-HHHHHHHcCCccccc--eEEEEeCchhhc---cccccchhHHHHHHHHHHhhcCeEEE-EcchH
Confidence 378888888885433 232343443333333 345555422221 12233345556778888888888876 55666
Q ss_pred HHHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCC
Q 011979 179 HELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (473)
Q Consensus 179 ~~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (473)
.++++.++.. ...++. |+..+...... . .......
T Consensus 149 ~~~~q~~~~~~~~~lyf-------Pt~m~~~~~~~---~----------------------------------~~~~~~~ 184 (360)
T PF07429_consen 149 AYFQQRYPRVPASLLYF-------PTRMDPALTLS---E----------------------------------KNKKNKG 184 (360)
T ss_pred HHHHHHcCCCCceEEEc-------CCCCchhhhcc---c----------------------------------cccCCCC
Confidence 6777777543 333322 21110000000 0 0011223
Q ss_pred CeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCCh----HHHH
Q 011979 258 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDK----ESYE 332 (473)
Q Consensus 258 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~----~~l~ 332 (473)
+..|+..-+-++..+.-..+++++.. ...++++++- |.|... ++++
T Consensus 185 ~ltILvGNSgd~sNnHieaL~~L~~~-----------------------------~~~~~kIivPLsYg~~n~~Yi~~V~ 235 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEALEALKQQ-----------------------------FGDDVKIIVPLSYGANNQAYIQQVI 235 (360)
T ss_pred ceEEEEcCCCCCCccHHHHHHHHHHh-----------------------------cCCCeEEEEECCCCCchHHHHHHHH
Confidence 43454444556666676666666653 2356776653 555422 4445
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEE
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL 411 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~ 411 (473)
+.++++-- +++..+..++|.+|+.++++.+|++++. .....++|+ +.=.+.+|+||+-+..........+.+.-++
T Consensus 236 ~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~--~~RQQgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~ipVl 312 (360)
T PF07429_consen 236 QAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFN--HNRQQGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGIPVL 312 (360)
T ss_pred HHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEe--echhhhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCCeEE
Confidence 55555432 5888876559999999999999999995 236677774 5568999999999976555555544444444
Q ss_pred eC----CHHHHHHHHHHHHh
Q 011979 412 FS----SSSELADQLLMLFK 427 (473)
Q Consensus 412 ~~----~~~~la~~i~~l~~ 427 (473)
+. |...+.++=.++..
T Consensus 313 f~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 313 FYGDELDEALVREAQRQLAN 332 (360)
T ss_pred eccccCCHHHHHHHHHHHhh
Confidence 43 24444444444433
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.55 E-value=0.011 Score=60.09 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCCCeEEEEEee-ccCCCCHH--HHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 255 PNRPALVVSSTS-WTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 255 ~~~~~~i~~~G~-~~~~K~~~--~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
+++|.+++..|. ..+.|.+. -..+.++.+.+ .+..++++|...+.+..
T Consensus 172 ~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-----------------------------~~~~ivl~G~~~e~~~~ 222 (334)
T TIGR02195 172 TERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-----------------------------QGYQVVLFGSAKDHPAG 222 (334)
T ss_pred CCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-----------------------------CCCEEEEEEChhhHHHH
Confidence 346667777766 44666543 56666666544 24678899976665555
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 332 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 332 ~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++..+..+-..+.+.|. .+-.++..+++.||++|. ..++ .+==|.|.|+|+|+-
T Consensus 223 ~~i~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~---~DSG-----p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 223 NEIEALLPGELRNLAGE-TSLDEAVDLIALAKAVVT---NDSG-----LMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCcccccCCCC-CCHHHHHHHHHhCCEEEe---eCCH-----HHHHHHHcCCCEEEE
Confidence 55544433223446676 788999999999999998 4555 334477999999986
No 139
>PLN02562 UDP-glycosyltransferase
Probab=97.49 E-value=0.2 Score=53.37 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=54.2
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccceec-CCceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKV-DKNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~-~~~G~~~~-- 413 (473)
+|+.+. .|+|+.+ +|...++..+. +++. -++++||+.+|+|+|+... ......+.+ -+.|+-..
T Consensus 328 ~~~~v~-~w~PQ~~---iL~h~~v~~fv---tH~G--~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~ 398 (448)
T PLN02562 328 KQGKVV-SWAPQLE---VLKHQAVGCYL---THCG--WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGF 398 (448)
T ss_pred cCEEEE-ecCCHHH---HhCCCccceEE---ecCc--chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCC
Confidence 477676 4798876 45666665552 2221 2389999999999999852 334444433 35666664
Q ss_pred CHHHHHHHHHHHHhC
Q 011979 414 SSSELADQLLMLFKG 428 (473)
Q Consensus 414 ~~~~la~~i~~l~~~ 428 (473)
+.+++++++.+++.+
T Consensus 399 ~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 399 GQKEVEEGLRKVMED 413 (448)
T ss_pred CHHHHHHHHHHHhCC
Confidence 588999999999974
No 140
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.44 E-value=0.13 Score=52.82 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=64.3
Q ss_pred CCeEEEEEeeccCCCCH--HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHH
Q 011979 257 RPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 332 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~--~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~ 332 (473)
++.+++..|.-...|.+ +...+.++.+.+ .+..++++|...+ .+..+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-----------------------------~~~~vvl~ggp~e~e~~~~~ 233 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA-----------------------------RGYEVVLTSGPDKDDLACVN 233 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEcCCChHHHHHHH
Confidence 35577777765566654 355555555543 2567888875322 22234
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+.++.... ..+.+.|. .+-.++..+++.||++|. ..+| .+==|.|+|+|+|+-
T Consensus 234 ~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~v~---nDSG-----p~HlAaA~g~P~v~l 287 (352)
T PRK10422 234 EIAQGCQTPPVTALAGK-TTFPELGALIDHAQLFIG---VDSA-----PAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHhcCCCccccccCC-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEEEE
Confidence 44443332 23556777 789999999999999998 5565 334477899999986
No 141
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.34 E-value=0.083 Score=52.78 Aligned_cols=288 Identities=16% Similarity=0.147 Sum_probs=153.5
Q ss_pred CCCCChhHHH---HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchh-HHHHHHHHHHHHHH
Q 011979 14 DLGRSPRMQY---QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVL-KPVLLLLKPLIQFF 89 (473)
Q Consensus 14 ~~g~s~r~~~---~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (473)
|++.++.+.. ....|.++ ||+|.+.|..... ..++.+-.|+....+.. .+...+. +.+....+..
T Consensus 6 DI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~-v~~LLd~ygf~~~~Igk-----~g~~tl~~Kl~~~~eR~~---- 74 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV-VTELLDLYGFPYKSIGK-----HGGVTLKEKLLESAERVY---- 74 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc-HHHHHHHhCCCeEeecc-----cCCccHHHHHHHHHHHHH----
Confidence 3444444443 34567776 9999987765433 34667777888888872 1111122 2222111111
Q ss_pred HHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCE
Q 011979 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANG 169 (473)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 169 (473)
.+..+.. ..+||+.+.-+.+.++-. +...++|.|+-.-+-+. . .-.+.....|+.
T Consensus 75 -~L~ki~~-~~kpdv~i~~~s~~l~rv------afgLg~psIi~~D~ehA-~----------------~qnkl~~Pla~~ 129 (346)
T COG1817 75 -KLSKIIA-EFKPDVAIGKHSPELPRV------AFGLGIPSIIFVDNEHA-E----------------AQNKLTLPLADV 129 (346)
T ss_pred -HHHHHHh-hcCCceEeecCCcchhhH------HhhcCCceEEecCChhH-H----------------HHhhcchhhhhh
Confidence 1122222 278998886443333322 44456777763333210 0 114556678898
Q ss_pred EEEcCHHHHHHHHHHhCCc-e-EEeeCCCC-----CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchh
Q 011979 170 CLCVTQAMQHELAQNWGIK-A-TVLYDQPP-----EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (473)
Q Consensus 170 vi~vS~~~~~~l~~~~g~~-~-~vi~n~~~-----~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
+++.+......+.. +|.+ . .+-+++.. ..|.|. .+..++||.
T Consensus 130 ii~P~~~~~~~~~~-~G~~p~~i~~~~giae~~~v~~f~pd-----~evlkeLgl------------------------- 178 (346)
T COG1817 130 IITPEAIDEEELLD-FGADPNKISGYNGIAELANVYGFVPD-----PEVLKELGL------------------------- 178 (346)
T ss_pred eecccccchHHHHH-hCCCccceecccceeEEeecccCCCC-----HHHHHHcCC-------------------------
Confidence 88888877777766 4554 3 33344422 235443 345555652
Q ss_pred hhcccccccccCCCCCeEEEEE---ee--ccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCE
Q 011979 243 FTSLAGIDVFLKPNRPALVVSS---TS--WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~---G~--~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+.+.+++=. |. ....++.+.+-+++.++.+ .+
T Consensus 179 -----------~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k----------------------------~g-- 217 (346)
T COG1817 179 -----------EEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK----------------------------YG-- 217 (346)
T ss_pred -----------CCCCceEEEeeccccceeeccccchhhHHHHHHHHHh----------------------------Cc--
Confidence 22233233211 11 2234566677888888766 23
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
.+++- ..+..++..+++. ++... -+..|-.+++--|++.+- .. |+-.-||...|+|.|++.-|
T Consensus 218 -iV~ip---r~~~~~eife~~~--n~i~p---k~~vD~l~Llyya~lvig----~g----gTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 218 -IVLIP---REKEQAEIFEGYR--NIIIP---KKAVDTLSLLYYATLVIG----AG----GTMAREAALLGTPAISCYPG 280 (346)
T ss_pred -EEEec---CchhHHHHHhhhc--cccCC---cccccHHHHHhhhheeec----CC----chHHHHHHHhCCceEEecCC
Confidence 33333 2333455555443 33322 224555557777888774 22 34668999999999999622
Q ss_pred ---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 398 ---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 398 ---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
+..++..+ .|.++. |+.+..+...+.+..
T Consensus 281 kll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 281 KLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred ccccccHHHHh--cCceeecCCHHHHHHHHHHHhhc
Confidence 34444433 566764 566666666666553
No 142
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.33 E-value=0.32 Score=51.93 Aligned_cols=93 Identities=13% Similarity=0.225 Sum_probs=60.4
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecC-CceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~-~~G~~~~-- 413 (473)
+|..+. .|+|+.+ ++...++..+. +++- -++++||+++|+|+|+... ......+.+. +.|+..+
T Consensus 324 ~~g~v~-~w~PQ~~---iL~h~~v~~fv---tH~G--~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 394 (451)
T PLN02410 324 GRGYIV-KWAPQKE---VLSHPAVGGFW---SHCG--WNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGD 394 (451)
T ss_pred CCeEEE-ccCCHHH---HhCCCccCeee---ecCc--hhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCc
Confidence 466666 4899987 56666664442 2221 2389999999999999863 2333444333 6777763
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.+++++++.+++.+ ++ .+++++++++..
T Consensus 395 ~~~~~v~~av~~lm~~----~~-~~~~r~~a~~l~ 424 (451)
T PLN02410 395 LDRGAVERAVKRLMVE----EE-GEEMRKRAISLK 424 (451)
T ss_pred ccHHHHHHHHHHHHcC----Cc-HHHHHHHHHHHH
Confidence 588999999999975 22 345555555543
No 143
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.26 E-value=0.00039 Score=67.96 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=46.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhC-------CCeEEEEecCchhhhhh-h-hc---C-CCchH--------HHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-------RSAFIVDWHNFGYTLLS-L-SL---G-RRSHF--------VSIYRW 158 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~-------~~~~i~~~h~~~~~~~~-~-~~---~-~~~~~--------~~~~~~ 158 (473)
.+||+||+|+ +.+..+..+++... ++|+++++|+..|.-.. . .. + +...+ .... .
T Consensus 132 ~~pDIIH~hD---W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~i-n 207 (245)
T PF08323_consen 132 WKPDIIHCHD---WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQI-N 207 (245)
T ss_dssp -S-SEEEEEC---GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEE-E
T ss_pred CCCCEEEecC---chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccccccccc-C
Confidence 4799999999 55555555555543 59999999997531100 0 00 0 00000 0000 1
Q ss_pred HHHHHhhcCCEEEEcCHHHHHHHHHH
Q 011979 159 IEKYYGKMANGCLCVTQAMQHELAQN 184 (473)
Q Consensus 159 ~e~~~~~~ad~vi~vS~~~~~~l~~~ 184 (473)
+.+.-...||.|.|||+.+++++.+.
T Consensus 208 ~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 208 FLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred HHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 23455568999999999999888654
No 144
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.25 E-value=9e-06 Score=74.31 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=60.3
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc--------cccceecCCceEEe
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--------IEELVKVDKNGLLF 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~--------~~e~i~~~~~G~~~ 412 (473)
.+|.+.++ .+++.+++..||+.|. ..| +.++.|++++|+|.|..+... ....+.....|...
T Consensus 55 ~~v~~~~~---~~~m~~~m~~aDlvIs----~aG---~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~ 124 (167)
T PF04101_consen 55 PNVKVFGF---VDNMAELMAAADLVIS----HAG---AGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML 124 (167)
T ss_dssp CCCEEECS---SSSHHHHHHHHSEEEE----CS----CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS
T ss_pred CcEEEEec---hhhHHHHHHHcCEEEe----CCC---ccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc
Confidence 58999988 6789999999999886 333 358999999999999886554 33334444455555
Q ss_pred C----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011979 413 S----SSSELADQLLMLFKGFPDDSDVLKKLRNGT 443 (473)
Q Consensus 413 ~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 443 (473)
. +.+.|.++|..++++ +.....+.+.+
T Consensus 125 ~~~~~~~~~L~~~i~~l~~~----~~~~~~~~~~~ 155 (167)
T PF04101_consen 125 DESELNPEELAEAIEELLSD----PEKLKEMAKAA 155 (167)
T ss_dssp ECCC-SCCCHHHHHHCHCCC----HH-SHHHCCCH
T ss_pred CcccCCHHHHHHHHHHHHcC----cHHHHHHHHHH
Confidence 3 367899999998885 55555554443
No 145
>PLN00414 glycosyltransferase family protein
Probab=97.22 E-value=0.41 Score=51.01 Aligned_cols=103 Identities=12% Similarity=0.207 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-e
Q 011979 330 SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-K 404 (473)
Q Consensus 330 ~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~ 404 (473)
.+++.++..| ..+. .|+|+.+ +|....+..+. +++. -++++||+++|+|+|+... ......+ .
T Consensus 304 ~f~~r~~~~g---~vv~-~w~PQ~~---vL~h~~v~~fv---tH~G--~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 304 GFEERVKGRG---IVWE-GWVEQPL---ILSHPSVGCFV---NHCG--FGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred hHHHHhcCCC---eEEe-ccCCHHH---HhcCCccceEE---ecCc--hhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 4555544333 3333 5788876 56666554441 2211 2499999999999999863 2344444 3
Q ss_pred cCCceEEeC-------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 405 VDKNGLLFS-------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 405 ~~~~G~~~~-------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.-+.|+... +.+++++++.+++.+ +.+..+++++++++..
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDK---DSEIGNLVKRNHKKLK 418 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Confidence 456776662 588999999999975 3456677788877765
No 146
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.18 E-value=0.48 Score=51.01 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=55.9
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Ccccccee-cCCceEEe---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVK-VDKNGLLF--- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~-~~~~G~~~--- 412 (473)
.++.+.+ |+|+. .+|..+++..+. +++- -++++||+++|+|+|+... ......+. .-+.|+-.
T Consensus 345 ~g~~v~~-w~PQ~---~iL~h~~v~~fv---tH~G--~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 415 (482)
T PLN03007 345 KGLIIRG-WAPQV---LILDHQATGGFV---THCG--WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAK 415 (482)
T ss_pred CCEEEec-CCCHH---HHhccCccceee---ecCc--chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccc
Confidence 4677764 69885 577788775552 2221 2489999999999999863 22222221 11223221
Q ss_pred -------C--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011979 413 -------S--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 446 (473)
Q Consensus 413 -------~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 446 (473)
+ +.+++++++.+++.+ + +.+++++++++.
T Consensus 416 ~~~~~~~~~~~~~~l~~av~~~m~~----~-~~~~~r~~a~~~ 453 (482)
T PLN03007 416 KLVKVKGDFISREKVEKAVREVIVG----E-EAEERRLRAKKL 453 (482)
T ss_pred cccccccCcccHHHHHHHHHHHhcC----c-HHHHHHHHHHHH
Confidence 1 588999999999985 2 234455555443
No 147
>PLN02534 UDP-glycosyltransferase
Probab=97.07 E-value=0.62 Score=50.26 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=65.9
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----ccc-ceecCCceEEe---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEE-LVKVDKNGLLF--- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e-~i~~~~~G~~~--- 412 (473)
.++.+. .|+|+.+ ++...++..+. +++- .++++||+++|+|+|+....+ ... +++.-+.|+-+
T Consensus 344 ~g~~v~-~w~pq~~---iL~h~~v~~fv---tH~G--~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~ 414 (491)
T PLN02534 344 RGLLIK-GWAPQVL---ILSHPAIGGFL---THCG--WNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVE 414 (491)
T ss_pred CCeecc-CCCCHHH---HhcCCccceEE---ecCc--cHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccc
Confidence 355555 4788854 67777775552 2221 348999999999999986321 111 12222233321
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc--cchH---HHHHHHHHHHHHHHhhc
Q 011979 413 --------------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS--ARWA---TEWEEHAKPLITEVISQ 470 (473)
Q Consensus 413 --------------~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~w~---~~~~~~~~~~~~~~~~~ 470 (473)
-+.+++++++.+++.+ +.++-++|++++.+..+. .++. .+++ .+..+++++.+|
T Consensus 415 ~~~~~~~~~~~~~~v~~eev~~~v~~~m~~---~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~-nl~~fv~~i~~~ 487 (491)
T PLN02534 415 VPVRWGDEERVGVLVKKDEVEKAVKTLMDD---GGEEGERRRRRAQELGVMARKAMELGGSSHI-NLSILIQDVLKQ 487 (491)
T ss_pred ccccccccccccCccCHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHH
Confidence 2478999999999862 123345666666654411 1111 1222 256666666554
No 148
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.00 E-value=0.27 Score=50.19 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=47.5
Q ss_pred CEEEEEEcCCCC-h-HHHHHHHHHcCCCc-EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEE
Q 011979 316 RLLFIITGKGPD-K-ESYEEKIRRLRLKR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 316 ~~~l~ivG~g~~-~-~~l~~~~~~~~l~~-V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI 392 (473)
+..++++|...+ . +..++..+..+-.+ +.+.|. .+-.++..+++.||++|. ..+| .+==|.|+|+|+|
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~Vs---~DSG-----p~HlAaA~g~p~v 283 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGK-LTLPQLAALIDHARLFIG---VDSV-----PMHMAAALGTPLV 283 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCC-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEE
Confidence 467888885432 2 22344433333223 446676 788999999999999998 4555 3445788999999
Q ss_pred Ee
Q 011979 393 AV 394 (473)
Q Consensus 393 ~~ 394 (473)
+-
T Consensus 284 ~L 285 (344)
T TIGR02201 284 AL 285 (344)
T ss_pred EE
Confidence 86
No 149
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.97 E-value=0.071 Score=52.68 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=51.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+++++++|...+.+..++..+..+. ..+.+.|. .+-.++..+++.||++|. ..++ .+==|.|+|+|+|+-
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~-~~l~e~~~li~~~~l~I~---~Dsg-----~~HlA~a~~~p~i~l 223 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGK-TSLRELAALLARADLVVT---NDSG-----PMHLAAALGTPTVAL 223 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCC-CCHHHHHHHHHhCCEEEe---eCCH-----HHHHHHHcCCCEEEE
Confidence 6888999976666666666655432 34556666 678999999999999998 4444 334457999999997
Q ss_pred c
Q 011979 395 S 395 (473)
Q Consensus 395 ~ 395 (473)
-
T Consensus 224 ~ 224 (279)
T cd03789 224 F 224 (279)
T ss_pred E
Confidence 4
No 150
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.80 E-value=0.0095 Score=63.98 Aligned_cols=96 Identities=19% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
|. ++++.-.+.....+. +|+.+. .|+|+.++ |....+-++ -+++. -..+.||+.+|+|+|+.
T Consensus 306 ~~-~~iW~~~~~~~~~l~--------~n~~~~-~W~PQ~~l---L~hp~v~~f---itHgG--~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 306 PQ-RFIWKYEGEPPENLP--------KNVLIV-KWLPQNDL---LAHPRVKLF---ITHGG--LNSTQEALYHGVPMLGI 367 (500)
T ss_dssp TT-EEEEEETCSHGCHHH--------TTEEEE-SS--HHHH---HTSTTEEEE---EES----HHHHHHHHHCT--EEE-
T ss_pred CC-ccccccccccccccc--------ceEEEe-ccccchhh---hhcccceee---eeccc--cchhhhhhhccCCccCC
Confidence 55 677766553222211 478666 58998655 666655544 23332 34999999999999998
Q ss_pred cc----CccccceecCCceEEeC----CHHHHHHHHHHHHhC
Q 011979 395 SY----SCIEELVKVDKNGLLFS----SSSELADQLLMLFKG 428 (473)
Q Consensus 395 ~~----~~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~ 428 (473)
+. ......+.+.+.|...+ +.+++.++|.+++++
T Consensus 368 P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 368 PLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN 409 (500)
T ss_dssp GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS
T ss_pred CCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh
Confidence 63 34555566667787775 589999999999996
No 151
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.79 E-value=0.58 Score=45.85 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCCCCeEEEEEeeccCCCCH--HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 254 KPNRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 254 ~~~~~~~i~~~G~~~~~K~~--~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
+.-++.+-+.+|.-.+.-.+ +...+..+.+.+ ++......|++.-+-...+..
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k-------------------------~l~~~g~~~lisfSRRTp~~~ 212 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVK-------------------------ILENQGGSFLISFSRRTPDTV 212 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHH-------------------------HHHhCCceEEEEeecCCcHHH
Confidence 33466688888877666554 333333333322 112356778887766556677
Q ss_pred HHHHHH-cCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 332 EEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 332 ~~~~~~-~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
+..++. +.- +-+.+-+.--...=+..++..||..+. +.-.. +-+.||.+.|+||-+-.
T Consensus 213 ~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~---TaDSi---nM~sEAasTgkPv~~~~ 272 (329)
T COG3660 213 KSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIIS---TADSI---NMCSEAASTGKPVFILE 272 (329)
T ss_pred HHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEE---ecchh---hhhHHHhccCCCeEEEe
Confidence 777776 332 233333221245578899999999998 22221 25689999999998753
No 152
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.73 E-value=0.22 Score=50.46 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=54.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcC--CCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~--l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
...+.|+.+-....+.++.++++- ...+.+... -+..=+..+|..||.+++ +.- .-.-+.||.++|+||..
T Consensus 182 ~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~-~~~nPy~~~La~ad~i~V---T~D---SvSMvsEA~~tG~pV~v 254 (311)
T PF06258_consen 182 GGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDG-TGENPYLGFLAAADAIVV---TED---SVSMVSEAAATGKPVYV 254 (311)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecC-CCCCcHHHHHHhCCEEEE---cCc---cHHHHHHHHHcCCCEEE
Confidence 378999997765566666666553 257755554 566679999999999998 221 12368999999999999
Q ss_pred eccCc
Q 011979 394 VSYSC 398 (473)
Q Consensus 394 ~~~~~ 398 (473)
-...+
T Consensus 255 ~~l~~ 259 (311)
T PF06258_consen 255 LPLPG 259 (311)
T ss_pred ecCCC
Confidence 76543
No 153
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.73 E-value=0.21 Score=51.14 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCCeEEEEEee-ccCCCCH--HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 256 NRPALVVSSTS-WTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~-~~~~K~~--~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
+++.+++..|. +.+.|.+ +-..+.++.+.+ .++.++++|...+++..+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-----------------------------~~~~vvl~Gg~~e~~~~~ 229 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID-----------------------------EGYQVVLFGSAKDHEAGN 229 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEeCHHhHHHHH
Confidence 45656667665 3455554 345555555533 357888898665555555
Q ss_pred HHHHHcCC---Cc-EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 333 EKIRRLRL---KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 333 ~~~~~~~l---~~-V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+..+..+- .+ +.+.|. .+-.++..+++.||++|. ..+| .+==|.|.|+|+|+-
T Consensus 230 ~i~~~~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~---nDTG-----p~HlAaA~g~P~val 286 (348)
T PRK10916 230 EILAALNTEQQAWCRNLAGE-TQLEQAVILIAACKAIVT---NDSG-----LMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHhcccccccceeeccCC-CCHHHHHHHHHhCCEEEe---cCCh-----HHHHHHHhCCCEEEE
Confidence 55554432 12 455666 788999999999999998 4555 334478899999985
No 154
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.1 Score=54.33 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=79.0
Q ss_pred HHHHHHHHcCC-----C--cEEEecCCCC------cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 330 SYEEKIRRLRL-----K--RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 330 ~l~~~~~~~~l-----~--~V~~~g~~v~------~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
-+...+++.++ + +|.|.+.+++ .-|+.++.+.++++|+ ||+.|++|..-.|--.+|.|-|+|+.
T Consensus 456 piL~~iRr~~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVF---PSYYEPWGYTPAECTVMGiPSvtTNl 532 (692)
T KOG3742|consen 456 PILSSIRRIGLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVF---PSYYEPWGYTPAECTVMGIPSVTTNL 532 (692)
T ss_pred hHHHHhHhhhcccCcccceEEEecHHHhccCCCCcCCCHHHHhcccccccc---ccccCCCCCCchheEEeccccccccc
Confidence 35566777666 2 3555554443 3488999999999999 79999999999999999999999986
Q ss_pred Cc----cccceecCC-ceEEe-C--------CHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHhccccchHHH
Q 011979 397 SC----IEELVKVDK-NGLLF-S--------SSSELADQLLMLFKGFPDDSDVLKKLRNG--TLEMGLSARWATE 455 (473)
Q Consensus 397 ~~----~~e~i~~~~-~G~~~-~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~ 455 (473)
+| +.|.|.+.. -|+.. + ++++|++.|...++ ...|+++.++ ..+.+.-..|..-
T Consensus 533 SGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F~~-----qsRRQRIiqRNrtErLSdLLDWk~l 602 (692)
T KOG3742|consen 533 SGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEFCK-----QSRRQRIIQRNRTERLSDLLDWKYL 602 (692)
T ss_pred cchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHHHH-----HHHHHHHHHhcchhhHHHHHhHHHH
Confidence 54 456665443 46554 2 25666666666665 3445554333 3333334566543
No 155
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.24 Score=50.55 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=71.4
Q ss_pred CCeEEEEEe-eccCCCCHH--HHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHH
Q 011979 257 RPALVVSST-SWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 257 ~~~~i~~~G-~~~~~K~~~--~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
+|.+++..| +-...|.+. ...+.++.+.+ ...+++++|+..+.+..++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~-----------------------------~~~~Vvl~g~~~e~e~~~~ 225 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA-----------------------------KGYQVVLFGGPDEEERAEE 225 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH-----------------------------CCCEEEEecChHHHHHHHH
Confidence 566888888 666777654 55555555555 2388999998765566666
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 334 ~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
..+.++- .+.+.|. .+-.++..++..||++|. ..++ .+==|.|.|+|+|+--
T Consensus 226 i~~~~~~-~~~l~~k-~sL~e~~~li~~a~l~I~---~DSg-----~~HlAaA~~~P~I~iy 277 (334)
T COG0859 226 IAKGLPN-AVILAGK-TSLEELAALIAGADLVIG---NDSG-----PMHLAAALGTPTIALY 277 (334)
T ss_pred HHHhcCC-ccccCCC-CCHHHHHHHHhcCCEEEc---cCCh-----HHHHHHHcCCCEEEEE
Confidence 6666652 2227777 889999999999999997 4555 3445789999999974
No 156
>PLN02670 transferase, transferring glycosyl groups
Probab=96.66 E-value=0.032 Score=59.79 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=68.1
Q ss_pred EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecCCceEEeC-----
Q 011979 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKNGLLFS----- 413 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~~~G~~~~----- 413 (473)
+.+. .|+|+.+ +|....+..+. +++. -++++||+++|+|+|+... ......+...+.|+..+
T Consensus 341 ~vv~-~W~PQ~~---IL~H~~v~~Fv---tHcG--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~ 411 (472)
T PLN02670 341 MIHV-GWVPQVK---ILSHESVGGFL---THCG--WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERD 411 (472)
T ss_pred eEEe-CcCCHHH---HhcCcccceee---ecCC--cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccC
Confidence 4444 5799876 56677775552 2221 2489999999999999852 33444555567787662
Q ss_pred ---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011979 414 ---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 464 (473)
Q Consensus 414 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 464 (473)
+.+++.+++.+++.+ + .-+++++++++..+.+.=...-++.+..++
T Consensus 412 ~~~~~e~i~~av~~vm~~----~-~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~ 460 (472)
T PLN02670 412 GSFTSDSVAESVRLAMVD----D-AGEEIRDKAKEMRNLFGDMDRNNRYVDELV 460 (472)
T ss_pred CcCcHHHHHHHHHHHhcC----c-chHHHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 478999999999975 2 234566666665544443333344443333
No 157
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.29 Score=48.45 Aligned_cols=65 Identities=15% Similarity=0.366 Sum_probs=46.4
Q ss_pred CEEEEEEcCC-CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 316 RLLFIITGKG-PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 316 ~~~l~ivG~g-~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++.++ +|.+ |....+.+.++.+. ++.++ ...++++.++++||+.+. +. |+.+.|+...|+|.++-
T Consensus 187 nl~iV-~gs~~p~l~~l~k~~~~~~--~i~~~---~~~~dma~LMke~d~aI~----Aa----GstlyEa~~lgvP~l~l 252 (318)
T COG3980 187 NLHIV-VGSSNPTLKNLRKRAEKYP--NINLY---IDTNDMAELMKEADLAIS----AA----GSTLYEALLLGVPSLVL 252 (318)
T ss_pred eEEEE-ecCCCcchhHHHHHHhhCC--CeeeE---ecchhHHHHHHhcchhee----cc----chHHHHHHHhcCCceEE
Confidence 44443 3433 55566666666654 88887 448999999999999996 32 45899999999994443
No 158
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.57 E-value=0.95 Score=45.18 Aligned_cols=178 Identities=21% Similarity=0.168 Sum_probs=99.5
Q ss_pred HhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCccc
Q 011979 123 SSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHP 202 (473)
Q Consensus 123 ~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~ 202 (473)
++..+.|+++.-.+.+. + .++ ..+++-+...+.+|.+.+=-+...+++++ .|+++.+.++..- .+.+
T Consensus 95 a~~~~k~~~~~g~giGP------~--~~~---~~r~~~~~~l~~~~~i~vRD~~S~~~l~~-~g~~i~~~~D~a~-~l~~ 161 (298)
T TIGR03609 95 ARLFGKPVILWGQGIGP------L--RRR---LSRWLVRRVLRGCRAISVRDAASYRLLKR-LGIPAELAADPVW-LLPP 161 (298)
T ss_pred HHHcCCCEEEEecccCC------c--CCH---HHHHHHHHHHccCCEEEEeCHHHHHHHHH-hCCCceEeCChhh-hCCC
Confidence 44567888876666631 1 111 23355566678899988888888877765 6876555443211 0101
Q ss_pred CChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccC--CCCHHHHHHHH
Q 011979 203 TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAA 280 (473)
Q Consensus 203 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~K~~~~li~a~ 280 (473)
..... ....+++.+.+.+..+.. ....+.+.+++
T Consensus 162 ~~~~~--------------------------------------------~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l 197 (298)
T TIGR03609 162 EPWPG--------------------------------------------GEPLPEPVIVVSLRPWPLLDVSRLLRLLRAL 197 (298)
T ss_pred Ccccc--------------------------------------------cccCCCCeEEEEECCCCcCCHHHHHHHHHHH
Confidence 00000 011123434444433321 12345666666
Q ss_pred HHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcC--CCChHHHHHHHHHcCC-CcEEEecCCCCcccHHH
Q 011979 281 LMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK--GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPL 357 (473)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~--g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~ 357 (473)
..+.++ .+.+++++.- ..+.+..++..+.+.- ..| +.. .+.+++..
T Consensus 198 ~~l~~~----------------------------~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i--~~~-~~~~e~~~ 246 (298)
T TIGR03609 198 DRLQRD----------------------------TGAFVLFLPFQQPQDLPLARALRDQLLGPAEV--LSP-LDPEELLG 246 (298)
T ss_pred HHHHHh----------------------------hCCeEEEEeCCcchhHHHHHHHHHhcCCCcEE--Eec-CCHHHHHH
Confidence 666552 2455555443 2344444444444432 233 333 67889999
Q ss_pred HHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 358 LLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 358 ~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
+++++|++|. ++.+ .++=|+.+|+|+++..+
T Consensus 247 ~i~~~~~vI~----~RlH----~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 247 LFASARLVIG----MRLH----ALILAAAAGVPFVALSY 277 (298)
T ss_pred HHhhCCEEEE----echH----HHHHHHHcCCCEEEeec
Confidence 9999999986 4333 67889999999998753
No 159
>PLN02764 glycosyltransferase family protein
Probab=95.99 E-value=0.11 Score=55.27 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=59.1
Q ss_pred CCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEe------C-CH
Q 011979 348 MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLF------S-SS 415 (473)
Q Consensus 348 ~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~------~-~~ 415 (473)
.|+|+.+ ++....+..+. +++. .++++||+++|+|+|+... ......+ +.-+.|+-. . +.
T Consensus 323 ~W~PQ~~---vL~h~~v~~Fv---tH~G--~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~ 394 (453)
T PLN02764 323 GWVQQPL---ILSHPSVGCFV---SHCG--FGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSK 394 (453)
T ss_pred CCCCHHH---HhcCcccCeEE---ecCC--chHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCH
Confidence 5799877 45666554442 2221 2399999999999999863 2333444 334566653 1 57
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 416 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 416 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+++.+++.+++++ ..+..+++++++++..
T Consensus 395 e~i~~av~~vm~~---~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 395 ESLRDAINSVMKR---DSEIGNLVKKNHTKWR 423 (453)
T ss_pred HHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 8999999999975 2255667777777654
No 160
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.1 Score=58.14 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=98.9
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh-----
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK----- 328 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~----- 328 (473)
|+.. .++++=|+.+.|...+.+.-+..+.+.+ +++ ..|.+.+++.|+- |.-
T Consensus 485 p~~l-fd~~~kRiheYKRq~Lnl~~i~~ly~~i----~~d------------------~~prv~~iFaGKAhP~y~~aK~ 541 (750)
T COG0058 485 PNAL-FDGQARRIHEYKRQLLNLLDIERLYRIL----KED------------------WVPRVQIIFAGKAHPADYAAKE 541 (750)
T ss_pred CCcc-eeeeehhhhhhhhhHHhHhhHHHHHHHH----hcC------------------CCCceEEEEeccCCCcchHHHH
Confidence 4443 8889999999999888877766665532 111 2477888888874 221
Q ss_pred --HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEeccCccccce
Q 011979 329 --ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 403 (473)
Q Consensus 329 --~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i 403 (473)
..+.+.++..+. .+|.|+.. .+..-...++..||+-.. .| ..|..|+.-|=+|..|.+-|+|-.|..-|+.
T Consensus 542 iIk~I~~~a~~in~~lkVvFl~n-YdvslA~~iipa~Dvweq---is~a~~EASGTsnMK~alNGaltigtlDGanvEi~ 617 (750)
T COG0058 542 IIKLINDVADVINNKLKVVFLPN-YDVSLAELLIPAADVWEQ---IPTAGKEASGTSNMKAALNGALTLGTLDGANVEIY 617 (750)
T ss_pred HHHHHHHHHHhhcccceEEEeCC-CChhHHHhhccccccccc---CCCCCccccCcCcchHHhcCCceeeccccHHHHHH
Confidence 223334444444 47888876 777788889999999998 34 5588888999999999999999988888888
Q ss_pred e--cCCceEEeCC
Q 011979 404 K--VDKNGLLFSS 414 (473)
Q Consensus 404 ~--~~~~G~~~~~ 414 (473)
+ .+.|||++.+
T Consensus 618 e~vg~~N~~~fG~ 630 (750)
T COG0058 618 EHVGGENGWIFGE 630 (750)
T ss_pred HhcCCCceEEeCC
Confidence 6 7899999974
No 161
>PLN03004 UDP-glycosyltransferase
Probab=95.88 E-value=0.095 Score=55.89 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=56.0
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec----cCcccccee-cCCceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVK-VDKNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~----~~~~~e~i~-~~~~G~~~~-- 413 (473)
.++.+. .|+|+.+ +|..+++..+. +++. -++++||+++|+|+|+.. .......+. +-+.|+..+
T Consensus 334 ~g~~v~-~W~PQ~~---iL~H~~v~~Fv---TH~G--~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~ 404 (451)
T PLN03004 334 KGMVVK-SWAPQVP---VLNHKAVGGFV---THCG--WNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNES 404 (451)
T ss_pred CcEEEE-eeCCHHH---HhCCCccceEe---ccCc--chHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCC
Confidence 466666 4799877 67888886552 3221 248999999999999985 333444453 346776662
Q ss_pred -----CHHHHHHHHHHHHhC
Q 011979 414 -----SSSELADQLLMLFKG 428 (473)
Q Consensus 414 -----~~~~la~~i~~l~~~ 428 (473)
+.+++++++.+++.+
T Consensus 405 ~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 405 ETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred cCCccCHHHHHHHHHHHhcC
Confidence 578999999999974
No 162
>PLN00164 glucosyltransferase; Provisional
Probab=95.84 E-value=0.13 Score=55.26 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=59.4
Q ss_pred EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEeC----
Q 011979 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS---- 413 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~~---- 413 (473)
+.+. .|+|+.+ +|...++..+.+-... ++++||+++|+|+|+... ......+ ..-+.|+...
T Consensus 341 ~~v~-~w~PQ~~---iL~h~~vg~fvtH~Gw-----nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~ 411 (480)
T PLN00164 341 LVWP-TWAPQKE---ILAHAAVGGFVTHCGW-----NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRK 411 (480)
T ss_pred eEEe-ecCCHHH---HhcCcccCeEEeeccc-----chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccc
Confidence 4443 4688765 5677776555211222 389999999999999852 3333333 3456776652
Q ss_pred -----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 414 -----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 414 -----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.++++++|.+++.+ ..++.+++++++.+..
T Consensus 412 ~~~~~~~e~l~~av~~vm~~---~~~~~~~~r~~a~~~~ 447 (480)
T PLN00164 412 RDNFVEAAELERAVRSLMGG---GEEEGRKAREKAAEMK 447 (480)
T ss_pred cCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 478999999999975 1223556666666654
No 163
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.84 E-value=0.21 Score=46.12 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=82.8
Q ss_pred CCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCC
Q 011979 32 MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPP 111 (473)
Q Consensus 32 ~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~ 111 (473)
.||+|..+|....... .+||+..++..............+.+-............+..|..+-..||+|+.|..+
T Consensus 2 ~gh~v~fl~~~~~~~~-----~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GW 76 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPI-----PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGW 76 (171)
T ss_pred CCCEEEEEecCCCCCC-----CCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc
Confidence 4999999995443322 16999988873222222222222222222222222333444555554679999999865
Q ss_pred chhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhh--cC---CCchHH----HHHHHHHHHHhhcCCEEEEcCHHHHHHH
Q 011979 112 SVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLS--LG---RRSHFV----SIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (473)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~--~~---~~~~~~----~~~~~~e~~~~~~ad~vi~vS~~~~~~l 181 (473)
.-.. .++- ..++|++... ++.|...... +. +...-. +......-.....||..++.|...++.+
T Consensus 77 Ge~L-----flkdv~P~a~li~Y~-E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~f 150 (171)
T PF12000_consen 77 GETL-----FLKDVFPDAPLIGYF-EFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQF 150 (171)
T ss_pred chhh-----hHHHhCCCCcEEEEE-EEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhC
Confidence 4322 2233 3578876521 1111111000 00 111111 1122223333447999999999999888
Q ss_pred HHHhCCceEEeeCCCC
Q 011979 182 AQNWGIKATVLYDQPP 197 (473)
Q Consensus 182 ~~~~g~~~~vi~n~~~ 197 (473)
-..+..++.||++|.+
T Consensus 151 P~~~r~kI~VihdGiD 166 (171)
T PF12000_consen 151 PAEFRSKISVIHDGID 166 (171)
T ss_pred CHHHHcCcEEeecccc
Confidence 7777888999999954
No 164
>PLN02210 UDP-glucosyl transferase
Probab=95.76 E-value=0.19 Score=53.75 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=53.0
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccceec-CCceEEeC---
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKV-DKNGLLFS--- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~-~~~G~~~~--- 413 (473)
+..+. .|+|+.+ +|..+++..+..-...+ +++|++++|+|+|+-.. ......+.+ -+.|+...
T Consensus 325 ~g~v~-~w~PQ~~---iL~h~~vg~FitH~G~n-----S~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~ 395 (456)
T PLN02210 325 QGVVL-EWSPQEK---ILSHMAISCFVTHCGWN-----STIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDA 395 (456)
T ss_pred CeEEE-ecCCHHH---HhcCcCcCeEEeeCCcc-----cHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccc
Confidence 44445 5799875 77788755552112233 88999999999999863 233444444 56776652
Q ss_pred -----CHHHHHHHHHHHHhC
Q 011979 414 -----SSSELADQLLMLFKG 428 (473)
Q Consensus 414 -----~~~~la~~i~~l~~~ 428 (473)
+.+++++++.+++.+
T Consensus 396 ~~~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 396 VDGELKVEEVERCIEAVTEG 415 (456)
T ss_pred cCCcCCHHHHHHHHHHHhcC
Confidence 578999999999974
No 165
>PLN02555 limonoid glucosyltransferase
Probab=95.65 E-value=0.19 Score=54.07 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=59.2
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecC-CceEEe---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLF--- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~-~~G~~~--- 412 (473)
+|+.+. .|+|+.+ +|....+..+. +++. -++++||+.+|+|+|+... ......+.+. +.|+..
T Consensus 337 ~~g~v~-~W~PQ~~---iL~H~~v~~Fv---tH~G--~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~ 407 (480)
T PLN02555 337 DKGKIV-QWCPQEK---VLAHPSVACFV---THCG--WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRG 407 (480)
T ss_pred CceEEE-ecCCHHH---HhCCCccCeEE---ecCC--cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCC
Confidence 467666 4798866 45444443331 2221 2389999999999999863 2333434333 667665
Q ss_pred ---C---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 413 ---S---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 413 ---~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
. +.+++++++.+++.+ ++.++|++++++..
T Consensus 408 ~~~~~~v~~~~v~~~v~~vm~~-----~~g~~~r~ra~~l~ 443 (480)
T PLN02555 408 EAENKLITREEVAECLLEATVG-----EKAAELKQNALKWK 443 (480)
T ss_pred ccccCcCcHHHHHHHHHHHhcC-----chHHHHHHHHHHHH
Confidence 1 478999999999974 23456777776654
No 166
>PLN03015 UDP-glucosyl transferase
Probab=95.16 E-value=5.6 Score=42.71 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=57.1
Q ss_pred EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEeC----
Q 011979 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS---- 413 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~~---- 413 (473)
+.+. .|+|+.++ +....+..+. +++. -++++||+++|+|+|+... ......+ ..-+.|+-..
T Consensus 337 l~v~-~W~PQ~~v---L~h~~vg~fv---tH~G--wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~ 407 (470)
T PLN03015 337 LVVT-QWAPQVEI---LSHRSIGGFL---SHCG--WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPS 407 (470)
T ss_pred eEEE-ecCCHHHH---hccCccCeEE---ecCC--chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEeccccc
Confidence 3343 57998875 4456665552 2211 2389999999999999863 2222323 3445565551
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 414 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 414 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.+++++++..++.. ..++-++|++++.+..
T Consensus 408 ~~~v~~e~i~~~v~~lm~~---~~eeg~~~R~ra~~lk 442 (470)
T PLN03015 408 EKVIGREEVASLVRKIVAE---EDEEGQKIRAKAEEVR 442 (470)
T ss_pred CCccCHHHHHHHHHHHHcc---CcccHHHHHHHHHHHH
Confidence 478999999999962 1133456666666644
No 167
>PLN02554 UDP-glycosyltransferase family protein
Probab=95.00 E-value=0.38 Score=51.75 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=50.8
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccc-cceecCCceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIE-ELVKVDKNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~-e~i~~~~~G~~~~-- 413 (473)
+|+.+. .|+|+.+ +|+...+..+. +++. -++++||+.+|+|+|+... .... ..+..-+.|+..+
T Consensus 342 ~~g~v~-~W~PQ~~---iL~H~~v~~Fv---tH~G--~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~ 412 (481)
T PLN02554 342 DIGKVI-GWAPQVA---VLAKPAIGGFV---THCG--WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKY 412 (481)
T ss_pred cCceEE-eeCCHHH---HhCCcccCccc---ccCc--cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecc
Confidence 466666 5899866 55455554441 2221 2389999999999999863 2233 3344445665541
Q ss_pred -------------CHHHHHHHHHHHHh
Q 011979 414 -------------SSSELADQLLMLFK 427 (473)
Q Consensus 414 -------------~~~~la~~i~~l~~ 427 (473)
+.++++++|.+++.
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhc
Confidence 57899999999996
No 168
>PLN02167 UDP-glycosyltransferase family protein
Probab=94.98 E-value=0.45 Score=51.14 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=50.4
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Ccccc-ceecCCceEEeC---
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEE-LVKVDKNGLLFS--- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e-~i~~~~~G~~~~--- 413 (473)
+..+. .|+|+.+ +|....+..+.+-...+ +++||+++|+|+|+... ..... ++..-+.|+...
T Consensus 341 rg~v~-~w~PQ~~---iL~h~~vg~fvtH~G~n-----S~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~ 411 (475)
T PLN02167 341 RGLVC-GWAPQVE---ILAHKAIGGFVSHCGWN-----SVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDY 411 (475)
T ss_pred Ceeee-ccCCHHH---HhcCcccCeEEeeCCcc-----cHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccc
Confidence 34455 5788866 56665554442112233 88999999999999863 22332 244456676541
Q ss_pred --------CHHHHHHHHHHHHhC
Q 011979 414 --------SSSELADQLLMLFKG 428 (473)
Q Consensus 414 --------~~~~la~~i~~l~~~ 428 (473)
+.+++++++.+++.+
T Consensus 412 ~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 412 VSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccccCCcccHHHHHHHHHHHhcC
Confidence 478999999999975
No 169
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.84 E-value=0.084 Score=43.88 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=57.5
Q ss_pred EEEEcC-CCChHHHHHHHHHcCCCcEEE--ecCCCCccc--HHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 319 FIITGK-GPDKESYEEKIRRLRLKRVAF--RTMWLSAED--YPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 319 l~ivG~-g~~~~~l~~~~~~~~l~~V~~--~g~~v~~~~--i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
++|+|+ ......+++.++++|.+-+.+ -+. ..... ++..+..||+.|++...-+....-..--+|-..|+|++.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~-~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGG-DEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCC-CccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 577885 356788999999999866666 233 33444 999999999999963332333344455667788999999
Q ss_pred eccCcccc
Q 011979 394 VSYSCIEE 401 (473)
Q Consensus 394 ~~~~~~~e 401 (473)
+...+...
T Consensus 81 ~~~~~~~~ 88 (97)
T PF10087_consen 81 SRSRGVSS 88 (97)
T ss_pred ECCCCHHH
Confidence 98655443
No 170
>PRK14986 glycogen phosphorylase; Provisional
Probab=94.49 E-value=0.3 Score=55.19 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=99.3
Q ss_pred cCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh--
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK-- 328 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~-- 328 (473)
+.|+.- ..+++=|+.+.|...+ ++..+..+.+- .+.+........+++.|+- |.-
T Consensus 539 ldp~sL-fd~qakR~heYKRq~LNil~~i~ry~~i--------------------~~~p~~~~~P~~~IFaGKAaP~y~~ 597 (815)
T PRK14986 539 VNPKAL-FDVQIKRIHEYKRQLMNVLHVITRYNRI--------------------KADPDAKWVPRVNIFAGKAASAYYM 597 (815)
T ss_pred cCcccc-eeeeehhhhhhhhhhHHHhhhHHHHHHH--------------------HhCCCcCCCCeEEEEeecCCCCcHH
Confidence 344433 7888999999999988 77777666541 1111111234788888874 221
Q ss_pred -HHHHH----HHHH----cCC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEe
Q 011979 329 -ESYEE----KIRR----LRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 329 -~~l~~----~~~~----~~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~ 394 (473)
..+-+ .++. -.+ + +|.|+.- ...+-...++..||+-.. .| ..|..|+.=+=+|..|.+.++|
T Consensus 598 aK~iIk~I~~va~~in~Dp~v~~~lkVVFlen-Y~vslAe~lipg~Dv~eq---is~ag~EASGTsnMK~alNGaLtlgt 673 (815)
T PRK14986 598 AKHIIHLINDVAKVINNDPQIGDKLKVVFIPN-YSVSLAQLIIPAADLSEQ---ISLAGTEASGTSNMKFALNGALTIGT 673 (815)
T ss_pred HHHHHHHHHHHHHHhccChhhcCceeEEEeCC-CCHHHHHHhhhhhhhhhh---CCCCCccccCcchhhHHhcCceeeec
Confidence 22222 2221 112 2 6888876 677788889999999998 34 4578888889999999999999
Q ss_pred ccCccccceec--CCceEEeC-CHHHHHHH
Q 011979 395 SYSCIEELVKV--DKNGLLFS-SSSELADQ 421 (473)
Q Consensus 395 ~~~~~~e~i~~--~~~G~~~~-~~~~la~~ 421 (473)
-.|...|+.++ +.||+++. +.+++.+.
T Consensus 674 lDG~nvEi~e~vG~eN~~~fG~~~~ev~~~ 703 (815)
T PRK14986 674 LDGANVEMLEHVGEENIFIFGNTAEEVEAL 703 (815)
T ss_pred cCCchhHHHHhcCCCcEEEeCCCHHHHHHH
Confidence 98988888875 78999997 56555543
No 171
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.36 E-value=1.1 Score=48.25 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=49.0
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEeC---
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~~--- 413 (473)
++.+.+ |+|+.+ +|....+.++. +++- .++++||+++|+|+|+... ......+ +.-+.|+...
T Consensus 344 g~~v~~-w~PQ~~---vL~h~~v~~fv---tH~G--~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~ 414 (477)
T PLN02863 344 GLVIRG-WAPQVA---ILSHRAVGAFL---THCG--WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGA 414 (477)
T ss_pred CEEecC-CCCHHH---HhcCCCcCeEE---ecCC--chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCC
Confidence 566654 688854 66665554442 2221 2389999999999999863 2333433 3346676551
Q ss_pred ----CHHHHHHHHHHHHh
Q 011979 414 ----SSSELADQLLMLFK 427 (473)
Q Consensus 414 ----~~~~la~~i~~l~~ 427 (473)
+.+++++++.+++.
T Consensus 415 ~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 415 DTVPDSDELARVFMESVS 432 (477)
T ss_pred CCCcCHHHHHHHHHHHhh
Confidence 46789999988874
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.02 E-value=0.15 Score=49.27 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCCCeEEEEEeeccCCCCHHH--HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGI--LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KES 330 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~--li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~ 330 (473)
.+++.+++..|.-.+.|.+.. ..+.+..+.+ ....++++|.+.+ .+.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-----------------------------~~~~vvl~g~~~~~~~~~ 153 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKE-----------------------------RGYRVVLLGGPEEQEKEI 153 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC-----------------------------CT-EEEE--SSHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHh-----------------------------hCceEEEEccchHHHHHH
Confidence 346667777777667777543 4455555433 2378889997654 122
Q ss_pred HHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 331 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 331 l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
.++..+...-..+.+.|. .+-.++..+++.||++|. ..++ .+==|.|.|+|+|+-
T Consensus 154 ~~~~~~~~~~~~~~~~~~-~~l~e~~ali~~a~~~I~---~Dtg-----~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 154 ADQIAAGLQNPVINLAGK-TSLRELAALISRADLVIG---NDTG-----PMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTTHTTTTEEETTT-S-HHHHHHHHHTSSEEEE---ESSH-----HHHHHHHTT--EEEE
T ss_pred HHHHHHhcccceEeecCC-CCHHHHHHHHhcCCEEEe---cCCh-----HHHHHHHHhCCEEEE
Confidence 222223222236888887 889999999999999998 4444 445578899999997
No 173
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.93 E-value=0.85 Score=45.88 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCeEEEEEeeccCCCCH--HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-HHHH
Q 011979 256 NRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~--~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~l~ 332 (473)
+++.+++..|.=...|.+ +...+.++.+.+ .+..++++|+++.+ +..+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~-----------------------------~~~~~vl~~g~~~e~~~~~ 228 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA-----------------------------RGLQIVLPWGNDAEKQRAE 228 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH-----------------------------CCCeEEEeCCCHHHHHHHH
Confidence 356577777654456655 455566666544 25677887655543 3344
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+..+.. ++..+.|. .+-.++..+++.||++|. ..++ .+==|.|+|+|+|+-
T Consensus 229 ~i~~~~--~~~~l~g~-~sL~el~ali~~a~l~I~---~DSg-----p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 229 RIAEAL--PGAVVLPK-MSLAEVAALLAGADAVVG---VDTG-----LTHLAAALDKPTVTL 279 (319)
T ss_pred HHHhhC--CCCeecCC-CCHHHHHHHHHcCCEEEe---CCCh-----HHHHHHHcCCCEEEE
Confidence 444433 34466777 889999999999999998 4555 333467889999986
No 174
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.88 E-value=0.47 Score=53.60 Aligned_cols=143 Identities=16% Similarity=0.166 Sum_probs=98.9
Q ss_pred cCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh--
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK-- 328 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~-- 328 (473)
+.|+.- ..+++=|+.+.|...+ ++..+..+.+ +.+++........+++.|+- |.-
T Consensus 526 ldp~sl-fdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 584 (797)
T cd04300 526 VDPDSL-FDVQVKRIHEYKRQLLNVLHIIHLYNR--------------------IKENPNADIVPRTFIFGGKAAPGYYM 584 (797)
T ss_pred cCCCcc-EEEEeeechhhhhhhhHHHhhHHHHHH--------------------HHhCCCcCCCCeEEEEeccCCCCcHH
Confidence 344443 7889999999999988 7777766654 11122112234788888864 221
Q ss_pred -HHHHHHHHHcC--------C-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEe
Q 011979 329 -ESYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 329 -~~l~~~~~~~~--------l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~ 394 (473)
..+-+++.... + + +|.|+.- ...+-...++..||+-.. .| ..|..|+.=+=+|..|.+.++|
T Consensus 585 aK~iIklI~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseq---is~ag~EASGTsnMK~~lNGaltlgt 660 (797)
T cd04300 585 AKLIIKLINAVADVVNNDPDVGDKLKVVFLPN-YNVSLAEKIIPAADLSEQ---ISTAGKEASGTGNMKFMLNGALTIGT 660 (797)
T ss_pred HHHHHHHHHHHHHHhccChhcCCceEEEEeCC-CChHHHHHhhhhhhhhhh---CCCCCccccCCchhhHHhcCceeeec
Confidence 22222222211 2 2 6888876 777788899999999998 44 4578888889999999999999
Q ss_pred ccCccccceec--CCceEEeC-CHHHHHH
Q 011979 395 SYSCIEELVKV--DKNGLLFS-SSSELAD 420 (473)
Q Consensus 395 ~~~~~~e~i~~--~~~G~~~~-~~~~la~ 420 (473)
-.|...|+.+. +.|++++. +.+++.+
T Consensus 661 lDGanvEi~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 661 LDGANVEIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred ccchhHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 88888887776 78999997 5555543
No 175
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=93.73 E-value=6.5 Score=37.38 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=38.7
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
.++.......+.+++..+++++|++|. .... ..+=|+++|+|+|+-++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Is---~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 237 FNVIIIDYSLSPDELLELISQADLVIS---MRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred cceeEecCCCCHHHHHHHHhcCCEEEe---cCCH-----HHHHHHHcCCCEEEEec
Confidence 456666666889999999999999997 3433 66889999999999754
No 176
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=93.51 E-value=12 Score=39.95 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----CccccceecC-CceEEe---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLF--- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i~~~-~~G~~~--- 412 (473)
++..+. .|+|+.+ +|...++..+. +++. .++++||+.+|+|+|+... ......+.+. +.|+-.
T Consensus 327 ~~g~v~-~W~PQ~~---iL~h~~vg~fv---tH~G--~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 327 EVGMIV-SWCSQIE---VLRHRAVGCFV---THCG--WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred CCeEEE-eeCCHHH---HhCCcccceEE---eeCC--cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC
Confidence 455555 5899766 67788876662 3221 2388999999999999863 2333344331 234433
Q ss_pred -C---CHHHHHHHHHHHHhC
Q 011979 413 -S---SSSELADQLLMLFKG 428 (473)
Q Consensus 413 -~---~~~~la~~i~~l~~~ 428 (473)
+ +.+++++++.+++++
T Consensus 398 ~~~~~~~e~l~~av~~vm~~ 417 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVMEE 417 (455)
T ss_pred cCCcCcHHHHHHHHHHHHhh
Confidence 1 478999999999974
No 177
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=93.11 E-value=0.45 Score=53.67 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=99.5
Q ss_pred cCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh--
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK-- 328 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~-- 328 (473)
+.|+.- ..+++=|+.+.|...+ ++..+..+.+ +.+.+........+++.|+- |.-
T Consensus 523 ldp~sl-fdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 581 (794)
T TIGR02093 523 VDPNSI-FDVQVKRLHEYKRQLLNVLHVIYLYNR--------------------IKEDPPKDIVPRTVIFGGKAAPGYHM 581 (794)
T ss_pred cCcccc-chhhheechhhhHHHHHHhhhHHHHHH--------------------HHhCCCcCCCCeEEEEEecCCCCcHH
Confidence 344433 6788899999999988 7777766654 11111111224688888864 221
Q ss_pred -HHHHHHHHHcC--------C-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEe
Q 011979 329 -ESYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 329 -~~l~~~~~~~~--------l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+.+-+++.... + + +|.|+.- ...+-...++..||+-.. .| ..|..|+.=+=+|..|.+.|+|
T Consensus 582 aK~iIklI~~va~~iN~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseq---istag~EASGTsnMK~alNGaltlgt 657 (794)
T TIGR02093 582 AKLIIKLINSVAEVVNNDPAVGDKLKVVFVPN-YNVSLAELIIPAADLSEQ---ISTAGKEASGTGNMKFMLNGALTIGT 657 (794)
T ss_pred HHHHHHHHHHHHHHhccChhhCCceeEEEeCC-CChHHHHHhhhhhhhhhh---CCCCCccccCcchhHHHhcCcceeec
Confidence 22333333222 2 2 6888876 777888899999999998 34 4578888889999999999999
Q ss_pred ccCccccceec--CCceEEeC-CHHHHHHH
Q 011979 395 SYSCIEELVKV--DKNGLLFS-SSSELADQ 421 (473)
Q Consensus 395 ~~~~~~e~i~~--~~~G~~~~-~~~~la~~ 421 (473)
-.|...|+.++ +.|++++. +.+++.+.
T Consensus 658 lDGanvEi~e~vG~eN~fiFG~~~~ev~~~ 687 (794)
T TIGR02093 658 LDGANVEIREEVGAENIFIFGLTVEEVEAL 687 (794)
T ss_pred ccchhHHHHHHhCcccEEEcCCCHHHHHHH
Confidence 88888888876 78999997 55555543
No 178
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=93.02 E-value=3 Score=44.66 Aligned_cols=76 Identities=11% Similarity=-0.134 Sum_probs=48.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHH---HHH--HHHHHHHhhcCCEEEEcC
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFV---SIY--RWIEKYYGKMANGCLCVT 174 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~---~~~--~~~e~~~~~~ad~vi~vS 174 (473)
..||+||.|. ..+..++.+++...++|...+.|.++-+.+..+--.+..+. .+. --.|...++.||.|||.|
T Consensus 400 ~~PdlI~GnY---sDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST 476 (550)
T PF00862_consen 400 GKPDLIIGNY---SDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITST 476 (550)
T ss_dssp S--SEEEEEH---HHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESS
T ss_pred CCCcEEEecc---CcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcc
Confidence 6899999998 77888888999999999999999997433321111122221 111 223677778999999998
Q ss_pred HHHH
Q 011979 175 QAMQ 178 (473)
Q Consensus 175 ~~~~ 178 (473)
....
T Consensus 477 ~QEI 480 (550)
T PF00862_consen 477 YQEI 480 (550)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 7444
No 179
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=92.94 E-value=0.98 Score=44.80 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=57.2
Q ss_pred hhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhh-hhcCC----------CchHHHHHHHHHHHHhhc
Q 011979 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS-LSLGR----------RSHFVSIYRWIEKYYGKM 166 (473)
Q Consensus 98 ~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~~~~----------~~~~~~~~~~~e~~~~~~ 166 (473)
...+.|++|+.+.. .+.+++..++...+.|++++-|+.. +-.+ ..... +..+.++++.+-+.++..
T Consensus 169 ~lP~advyHsvstG--yAgl~g~~~k~~~g~P~lLTEHGIY-~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~ 245 (268)
T PF11997_consen 169 PLPKADVYHSVSTG--YAGLLGALAKYRYGRPFLLTEHGIY-TREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRA 245 (268)
T ss_pred cCCCCCEEecCCcc--HHHHHHHHHHHHhCCCEEEecCCcc-HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999987743 3344577888889999999999983 2111 00000 122235667778888999
Q ss_pred CCEEEEcCHHHHHHHHHHhCC
Q 011979 167 ANGCLCVTQAMQHELAQNWGI 187 (473)
Q Consensus 167 ad~vi~vS~~~~~~l~~~~g~ 187 (473)
||.|++.++..+. .+...|.
T Consensus 246 Ad~I~~l~~~n~~-~q~~~Ga 265 (268)
T PF11997_consen 246 ADRITPLYEYNRE-WQIELGA 265 (268)
T ss_pred hCeecccchhhHH-HHHHhCC
Confidence 9999999998764 3333454
No 180
>PLN02207 UDP-glycosyltransferase
Probab=92.91 E-value=1.4 Score=47.26 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=50.5
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccc-eecCCceEEe---
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEEL-VKVDKNGLLF--- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~-i~~~~~G~~~--- 412 (473)
++..+. .|+|+.++ |....+..+. +++. -++++||+.+|+|+|+-.. ...... +..-+.|+-.
T Consensus 332 ~~g~i~-~W~PQ~~I---L~H~~vg~Fv---TH~G--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~ 402 (468)
T PLN02207 332 GRGMIC-GWSPQVEI---LAHKAVGGFV---SHCG--WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLD 402 (468)
T ss_pred CCeEEE-EeCCHHHH---hcccccceee---ecCc--cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecc
Confidence 466566 58999775 5555564442 2221 1388999999999999863 233343 3335566522
Q ss_pred --------CCHHHHHHHHHHHHh
Q 011979 413 --------SSSSELADQLLMLFK 427 (473)
Q Consensus 413 --------~~~~~la~~i~~l~~ 427 (473)
-+.+++.++|.+++.
T Consensus 403 ~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 403 YRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccccCCcccHHHHHHHHHHHHh
Confidence 157899999999996
No 181
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=92.19 E-value=0.52 Score=53.14 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=95.5
Q ss_pred EEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh---HHHHHH
Q 011979 260 LVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK---ESYEEK 334 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~---~~l~~~ 334 (473)
..+++=|+.+.|...+ ++..+..+.+ +.+.+........+++.|+- |.- ..+-++
T Consensus 531 fdvq~kR~heYKRq~Lnil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIkl 590 (798)
T PRK14985 531 FDVQIKRLHEYKRQHLNLLHILALYKE--------------------IRENPQADRVPRVFLFGAKAAPGYYLAKNIIFA 590 (798)
T ss_pred chhhHhhhhhhhhhhhHhhhhHHHHHH--------------------HHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHH
Confidence 6778899999999888 7777666654 11111112234788888874 221 222222
Q ss_pred HHHcC--------C-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 335 IRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 335 ~~~~~--------l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
+.... + + +|.|+.- ....-...++..||+-.. .| ..|..|+.=+=+|..|.+.++|-.|...|
T Consensus 591 I~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~lipaaDvseq---is~ag~EASGTsnMK~amNGaLtlgtlDGanvE 666 (798)
T PRK14985 591 INKVAEVINNDPLVGDKLKVVFLPD-YCVSAAELLIPAADISEQ---ISTAGKEASGTGNMKLALNGALTVGTLDGANVE 666 (798)
T ss_pred HHHHHHHhcCChhhCCceeEEEeCC-CChHHHHHHhhhhhhhhh---CCCCCccccCcchhHHHhcCceeeecccchHHH
Confidence 22221 1 2 6888876 777888899999999998 44 45788888899999999999998888888
Q ss_pred ceec--CCceEEeC-CHHHHHH
Q 011979 402 LVKV--DKNGLLFS-SSSELAD 420 (473)
Q Consensus 402 ~i~~--~~~G~~~~-~~~~la~ 420 (473)
+.+. +.|||++. +.+++.+
T Consensus 667 i~e~vG~eN~f~fG~~~~ev~~ 688 (798)
T PRK14985 667 IAEQVGEENIFIFGHTVEQVKA 688 (798)
T ss_pred HHHHhCcCcEEEeCCCHHHHHH
Confidence 7765 78999997 5555444
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.16 E-value=1.1 Score=45.17 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=48.0
Q ss_pred CEEEEEEcCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 316 RLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 316 ~~~l~ivG~g~-~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+..+++.|+++ +.+..++.++ . .+++.+.|. .+-.++..+++.||++|. ..++ .+==|.|+|+|+|+-
T Consensus 210 ~~~ivl~~G~~~e~~~~~~i~~-~-~~~~~l~g~-~sL~elaali~~a~l~I~---nDSG-----p~HlA~A~g~p~val 278 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKRLAE-G-FPYVEVLPK-LSLEQVARVLAGAKAVVS---VDTG-----LSHLTAALDRPNITL 278 (322)
T ss_pred CCeEEEeCCCHHHHHHHHHHHc-c-CCcceecCC-CCHHHHHHHHHhCCEEEe---cCCc-----HHHHHHHhCCCEEEE
Confidence 45677764344 3333343333 2 245777787 889999999999999998 5565 444578999999996
Q ss_pred c
Q 011979 395 S 395 (473)
Q Consensus 395 ~ 395 (473)
-
T Consensus 279 f 279 (322)
T PRK10964 279 Y 279 (322)
T ss_pred E
Confidence 3
No 183
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.07 E-value=1.4 Score=40.72 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCchh-HHHHHHHHHhh--CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHH
Q 011979 100 ASPDVFLVQNPPSVP-TLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~-~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 176 (473)
.+||+|++++|.... ...++++...+ .+.++||-- .+. +....+.-.+ .+++.||.+++.-++
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE-S~a------Rv~~lSlTGk-------lly~~aD~f~VQW~~ 156 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE-SFA------RVKTLSLTGK-------LLYPFADRFIVQWEE 156 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE-eee------ecCCCchHHH-------HHHHhCCEEEEcCHH
Confidence 679999999975542 22222222211 278877611 110 1223333233 334479999999998
Q ss_pred HHHHH
Q 011979 177 MQHEL 181 (473)
Q Consensus 177 ~~~~l 181 (473)
+++.+
T Consensus 157 l~~~y 161 (170)
T PF08660_consen 157 LAEKY 161 (170)
T ss_pred HHhHC
Confidence 77543
No 184
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=91.94 E-value=4.4 Score=45.44 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=85.2
Q ss_pred eEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CCh---HHHHH
Q 011979 259 ALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK---ESYEE 333 (473)
Q Consensus 259 ~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~---~~l~~ 333 (473)
...+++-|+.+.|...+ ++..+..+.+ +.+..........+++.|+- |.- +.+-+
T Consensus 445 lfdv~~rR~heYKRq~LniL~ii~~y~r--------------------ik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk 504 (713)
T PF00343_consen 445 LFDVQARRFHEYKRQLLNILHIIDRYNR--------------------IKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIK 504 (713)
T ss_dssp EEEEEES-SCCCCTHHHHHHHHHHHHHH--------------------HHHSTTSCCS-EEEEEE----TT-HHHHHHHH
T ss_pred hhhhhhhhcccccccCcccccHHHHHHH--------------------HHhcccCCCCCeEEEEeccCCCCcHHHHHHHH
Confidence 36789999999999888 4444555443 11111112234789999975 321 22333
Q ss_pred HHHHc--------CC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEeccCccc
Q 011979 334 KIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAVSYSCIE 400 (473)
Q Consensus 334 ~~~~~--------~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~~~~~~~ 400 (473)
++... .+ + +|.|+.- .+..-...++..+|+-.. .| ..|..|+.-+=+|..|.+-+++-.|..-
T Consensus 505 ~I~~va~~in~Dp~v~~~lkVvFlen-YdvslA~~lipg~DVwln---~p~~p~EASGTSgMK~~~NGaL~lstlDG~ni 580 (713)
T PF00343_consen 505 LINNVAEVINNDPEVGDRLKVVFLEN-YDVSLAEKLIPGVDVWLN---IPTRPKEASGTSGMKAAMNGALNLSTLDGWNI 580 (713)
T ss_dssp HHHHHHHHHCT-TTTCCGEEEEEETT--SHHHHHHHGGG-SEEEE------TTSSSS-SHHHHHHHTT-EEEEESSTCHH
T ss_pred HHHHHHHHHhcChhhccceeEEeecC-CcHHHHHHHhhhhhhhhh---CCCCCccccCCCcchhhcCCCeEEecccchhH
Confidence 32221 22 2 6899876 777788889999999999 34 5588999999999999999999888877
Q ss_pred cceec--CCceEEeC-CHHHHH
Q 011979 401 ELVKV--DKNGLLFS-SSSELA 419 (473)
Q Consensus 401 e~i~~--~~~G~~~~-~~~~la 419 (473)
|+.+. ..+++++. +.+++.
T Consensus 581 Ei~e~vG~eN~fiFG~~~~ev~ 602 (713)
T PF00343_consen 581 EIAEAVGEENIFIFGLTAEEVE 602 (713)
T ss_dssp HHHHHH-GGGSEEES-BHHHHH
T ss_pred HHHHhcCCCcEEEcCCCHHHHH
Confidence 77643 45789997 455543
No 185
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.22 E-value=2.3 Score=41.89 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=45.6
Q ss_pred CCCEEEEEEcCCCCh--HHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCc
Q 011979 314 YPRLLFIITGKGPDK--ESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 390 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~--~~l~~~~~~~-~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~P 390 (473)
.|+..++|-=...+. ... ....++ +..++.+... .-.+..++..||.++. .++. +-+||+.+|+|
T Consensus 153 ~p~~~lvvK~HP~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~Ll~~s~~Vvt---inSt-----vGlEAll~gkp 220 (269)
T PF05159_consen 153 NPDAKLVVKPHPDERGGNKY-SYLEELPNLPNVVIIDD---DVNLYELLEQSDAVVT---INST-----VGLEALLHGKP 220 (269)
T ss_pred CCCCEEEEEECchhhCCCCh-hHhhhhhcCCCeEEECC---CCCHHHHHHhCCEEEE---ECCH-----HHHHHHHcCCc
Confidence 567887765532110 111 222222 2356666643 6789999999999998 3333 66999999999
Q ss_pred EEEec
Q 011979 391 VCAVS 395 (473)
Q Consensus 391 vI~~~ 395 (473)
|++-.
T Consensus 221 Vi~~G 225 (269)
T PF05159_consen 221 VIVFG 225 (269)
T ss_pred eEEec
Confidence 99964
No 186
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=90.44 E-value=3 Score=44.91 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=53.2
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc----Cccccce-ecCCceEEeC---
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--- 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~----~~~~e~i-~~~~~G~~~~--- 413 (473)
++.+. .|+|+.+ ++....+..+. +++. -++++||+.+|+|+|+... ......+ ..-+.|+..+
T Consensus 339 g~vv~-~W~PQ~~---iL~h~~vg~Fi---tH~G--~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~ 409 (481)
T PLN02992 339 GFVVP-SWAPQAE---ILAHQAVGGFL---THCG--WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPK 409 (481)
T ss_pred CEEEe-ecCCHHH---HhCCcccCeeE---ecCc--hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCC
Confidence 46665 4798876 56677774442 3221 2489999999999999863 3334444 3556676652
Q ss_pred ---CHHHHHHHHHHHHhC
Q 011979 414 ---SSSELADQLLMLFKG 428 (473)
Q Consensus 414 ---~~~~la~~i~~l~~~ 428 (473)
+.+++++++.+++.+
T Consensus 410 ~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 410 EVISRSKIEALVRKVMVE 427 (481)
T ss_pred CcccHHHHHHHHHHHhcC
Confidence 478999999999975
No 187
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=90.08 E-value=26 Score=36.42 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHH----------HcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIR----------RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDM 384 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~----------~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Ea 384 (473)
..+.+++.+ |.....+..... ..+-=.+.++++ +|++++..+|..||+.++ +||+ +++=|
T Consensus 209 ~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF-~~Q~~yD~LLw~cD~NfV-----RGED---SfVRA 278 (374)
T PF10093_consen 209 KPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPF-VPQDDYDRLLWACDFNFV-----RGED---SFVRA 278 (374)
T ss_pred CCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCC-CCHHHHHHHHHhCccceE-----ecch---HHHHH
Confidence 346666666 444444544332 111125888888 999999999999999998 5543 67899
Q ss_pred HhcCCcEEEecc
Q 011979 385 FGCGLPVCAVSY 396 (473)
Q Consensus 385 ma~G~PvI~~~~ 396 (473)
.-+|+|.|=.-+
T Consensus 279 qwAgkPFvWhIY 290 (374)
T PF10093_consen 279 QWAGKPFVWHIY 290 (374)
T ss_pred HHhCCCceEecC
Confidence 999999998754
No 188
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=86.68 E-value=7.8 Score=41.33 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+++.|++.=.++....+.+...+.+-.+|.+. .|+|+.++. +....+..+ -+++ |++ .++|+..+|+|+|+.
T Consensus 309 ~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~-~W~PQ~~ll--l~H~~v~~F---vTHg-G~n-St~E~~~~GvP~v~~ 380 (496)
T KOG1192|consen 309 QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLS-KWAPQNDLL--LDHPAVGGF---VTHG-GWN-STLESIYSGVPMVCV 380 (496)
T ss_pred CCceEEEEecCCcchhhhhcCCCCCcCceEEe-cCCCcHHHh--cCCCcCcEE---EECC-ccc-HHHHHHhcCCceecC
Confidence 46667776655433221111111011367776 589999987 444334444 1222 232 669999999999976
Q ss_pred c----cCcccc-ceecCCceEEeC---CHHHHHHHHHHHHhC
Q 011979 395 S----YSCIEE-LVKVDKNGLLFS---SSSELADQLLMLFKG 428 (473)
Q Consensus 395 ~----~~~~~e-~i~~~~~G~~~~---~~~~la~~i~~l~~~ 428 (473)
+ ..-.+. +..++..|+... +..++.+++..++.+
T Consensus 381 Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~ 422 (496)
T KOG1192|consen 381 PLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN 422 (496)
T ss_pred CccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC
Confidence 4 223333 444444555543 233377888888774
No 189
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=86.25 E-value=3.2 Score=33.92 Aligned_cols=73 Identities=5% Similarity=-0.112 Sum_probs=43.2
Q ss_pred CCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEE
Q 011979 53 HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (473)
Q Consensus 53 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~ 132 (473)
.+|++++.+|..+ .....-++..+ ....+++ .++.+ ++.|+||.|...+.... -+.+.++..+.+.|+
T Consensus 13 tngLKVYYlP~~~--~~~~~t~Pt~~-~~~pl~R-------~Ilir-E~I~IVHgH~a~S~l~h-E~i~hA~~mGlktVf 80 (90)
T PF08288_consen 13 TNGLKVYYLPLKV--FYNQCTLPTLF-GSFPLLR-------NILIR-ERIDIVHGHQAFSTLCH-EAILHARTMGLKTVF 80 (90)
T ss_pred CCCeEEEeecchh--hhcCcchHHHH-HhhHHHH-------HHHHH-cCeeEEEeehhhhHHHH-HHHHHHHhCCCcEEe
Confidence 5689999998332 22222222222 1222222 22222 88999999985433333 355667778999999
Q ss_pred EecCc
Q 011979 133 DWHNF 137 (473)
Q Consensus 133 ~~h~~ 137 (473)
+-|.+
T Consensus 81 TDHSL 85 (90)
T PF08288_consen 81 TDHSL 85 (90)
T ss_pred ecccc
Confidence 99987
No 190
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=83.37 E-value=16 Score=39.19 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCEEEEEEcC---CCChHHHHHHHHH-cCC-CcEEEecCCCC---cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh
Q 011979 315 PRLLFIITGK---GPDKESYEEKIRR-LRL-KRVAFRTMWLS---AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 386 (473)
Q Consensus 315 ~~~~l~ivG~---g~~~~~l~~~~~~-~~l-~~V~~~g~~v~---~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama 386 (473)
...-+.+.|. |.-+..+-++.+. .+. ..+.+..+-.+ ...+.+.++.|-.+++| ...+...-.++||+.
T Consensus 289 R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p---~Gd~~ts~R~fdai~ 365 (464)
T KOG1021|consen 289 RPILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCP---PGDTPTSPRLFDAIV 365 (464)
T ss_pred CceEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECC---CCCCcccHhHHHHHH
Confidence 4567778886 2334555555554 111 23333322122 47889999999999995 333333449999999
Q ss_pred cC-CcEEEecc--CccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 387 CG-LPVCAVSY--SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 387 ~G-~PvI~~~~--~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
+| .|||.++. ....+.++-...+++++ .+++-+.|.+++...+ .+....|+++..+
T Consensus 366 ~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~i~--~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 366 SGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLSIP--EEEVLRMRENVIR 424 (464)
T ss_pred hCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 99 69999974 45566666666666666 5555555566655433 4556778888774
No 191
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=81.13 E-value=76 Score=33.26 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc-----cccce---ecCCceEEeCCHHHHHHHHH
Q 011979 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-----IEELV---KVDKNGLLFSSSSELADQLL 423 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~-----~~e~i---~~~~~G~~~~~~~~la~~i~ 423 (473)
..++..++..+|++|. . ++.+.+|+|...+|||.-.... ..... ....-|-++.+.+++.++|.
T Consensus 277 ~~di~dll~~sDiLIT---D-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~ 348 (388)
T COG1887 277 NADINDLLLVSDILIT---D-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIK 348 (388)
T ss_pred chhHHHHHhhhCEEEe---e-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHH
Confidence 5899999999999997 2 3448999999999999974221 11111 22345667778889999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHH
Q 011979 424 MLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 424 ~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
....+ +....++++..-.+
T Consensus 349 ~~~~~---~~~~~~k~~~~~~~ 367 (388)
T COG1887 349 PYDED---GNYDLEKLRVFNDK 367 (388)
T ss_pred hhhcc---cchhHHHHHHHHHh
Confidence 88775 23334444444444
No 192
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=80.88 E-value=11 Score=34.20 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=42.3
Q ss_pred hCCCCEEEEeCCCchhHHH-HHHHHHh--hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCH
Q 011979 99 IASPDVFLVQNPPSVPTLV-AVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~-~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (473)
..+||+|+++.|. ++.+ +..+..+ +.++|++.-+=|+. . .. .. ++...+|..++.|+
T Consensus 87 ~~~PD~IIsThp~--~~~~~l~~lk~~~~~~~~p~~tvvTD~~-~-----~H-~~-----------W~~~~~D~y~Vase 146 (169)
T PF06925_consen 87 EFQPDLIISTHPF--PAQVPLSRLKRRGRLPNIPVVTVVTDFD-T-----VH-PF-----------WIHPGVDRYFVASE 146 (169)
T ss_pred hcCCCEEEECCcc--hhhhHHHHHHHhhcccCCcEEEEEcCCC-C-----CC-cC-----------eecCCCCEEEECCH
Confidence 4899999999873 3333 2333222 23577654333330 0 00 00 12357999999999
Q ss_pred HHHHHHHHHhCCc
Q 011979 176 AMQHELAQNWGIK 188 (473)
Q Consensus 176 ~~~~~l~~~~g~~ 188 (473)
.+++.+.+ .|++
T Consensus 147 ~~~~~l~~-~Gi~ 158 (169)
T PF06925_consen 147 EVKEELIE-RGIP 158 (169)
T ss_pred HHHHHHHH-cCCC
Confidence 99999988 5887
No 193
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=80.84 E-value=65 Score=32.29 Aligned_cols=140 Identities=9% Similarity=0.071 Sum_probs=77.2
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChH--HHHHH---
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE--SYEEK--- 334 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~--~l~~~--- 334 (473)
+=+|+||++-.||+..+++.-.+..+ .++++-++-|-..... .+.+.
T Consensus 185 v~~yigR~Tt~kG~~~mfD~h~~~lK----------------------------~~~~~t~~~GierS~A~~~i~d~~~~ 236 (355)
T PF11440_consen 185 VNRYIGRQTTWKGPRRMFDLHEKILK----------------------------PAGFKTIMEGIERSPAKISIKDHGIP 236 (355)
T ss_dssp EEEEE--SSGGG-HHHHHHHHHHTTT----------------------------TTT-EEEEE---SSTHHHHHHHTT--
T ss_pred cceeeeeeeeecCcHHHhhhHHHhcC----------------------------CcchhHHhhhhhcCCceeeeecCCcc
Confidence 44799999999999999988777544 5889999988433211 11111
Q ss_pred --------HHHcCC---CcEEEecCCCCcccHHHHHhcCcEEEEeccCC--C-CCCCcHHHHHHHhcCC-cEEEeccCcc
Q 011979 335 --------IRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--S-GLDLPMKVVDMFGCGL-PVCAVSYSCI 399 (473)
Q Consensus 335 --------~~~~~l---~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~-~e~~p~kv~Eama~G~-PvI~~~~~~~ 399 (473)
+.+..+ .-+.++|+++ .+|..+.++.+-+++-...-. + ...+-..-+|..|||. ||.-.+.|..
T Consensus 237 ~~y~~~~~~~~~~~~pN~~~~v~~~Yi-~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN 315 (355)
T PF11440_consen 237 YEYYPKLDCDEPKPAPNSPVPVYGPYI-RSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGEN 315 (355)
T ss_dssp EEEE-CTGGGG---SSS--EEEESS---HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHH
T ss_pred cccCccccccCcccCCCCcceecchhh-hHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeecccccc
Confidence 111112 1388889844 788888899888887642222 1 2447779999999994 6666554432
Q ss_pred -------ccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 400 -------EELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 400 -------~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..++.+....+.++ |.++-.+.|.++.++
T Consensus 316 ~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 316 NRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp SB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred ceeeecCceeeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 23455555555564 577777777776653
No 194
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=79.79 E-value=23 Score=32.14 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=30.0
Q ss_pred cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
...+.+++++||+.+. | ...| +++|-+..|+|.|+.-
T Consensus 71 ~psl~e~I~~AdlVIs-H-AGaG-----S~letL~l~KPlivVv 107 (170)
T KOG3349|consen 71 SPSLTEDIRSADLVIS-H-AGAG-----SCLETLRLGKPLIVVV 107 (170)
T ss_pred CccHHHHHhhccEEEe-c-CCcc-----hHHHHHHcCCCEEEEe
Confidence 6789999999999996 1 1133 8899999999999873
No 195
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=76.46 E-value=3.7 Score=40.65 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=45.4
Q ss_pred cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC-CcEEEec--cCccccceecCCceEEeC--CHHHHHHHH
Q 011979 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-LPVCAVS--YSCIEELVKVDKNGLLFS--SSSELADQL 422 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G-~PvI~~~--~~~~~e~i~~~~~G~~~~--~~~~la~~i 422 (473)
..++.+.|++|..+++|... .....-++|||++| .|||.++ .-...+++.=....+.++ ++.++.+.|
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~---~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGD---GPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred chHHHHhcccCeEEEECCCC---CcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 45689999999999995222 22566999999999 6999876 345566664444555555 344444433
No 196
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=74.62 E-value=1.2e+02 Score=31.87 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=49.8
Q ss_pred CcEEEecCCCC-cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCCceEEeC--
Q 011979 341 KRVAFRTMWLS-AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~-~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~~G~~~~-- 413 (473)
.++.+..- + .+++...+.++|+.|- +..+ .++=|++.|+|+|+-.+. ++.+.. +--|+..+
T Consensus 266 ~~i~~~~d--~~~~~~~~~l~~~dl~Vg----~R~H----saI~al~~g~p~i~i~Y~~K~~~l~~~~--gl~~~~~~i~ 333 (385)
T COG2327 266 AEILVSSD--EYAEELGGILAACDLIVG----MRLH----SAIMALAFGVPAIAIAYDPKVRGLMQDL--GLPGFAIDID 333 (385)
T ss_pred cceEeecc--hHHHHHHHHhccCceEEe----ehhH----HHHHHHhcCCCeEEEeecHHHHHHHHHc--CCCcccccCC
Confidence 57777643 3 3677889999999996 4333 778899999999998753 222222 22234443
Q ss_pred --CHHHHHHHHHHHHhC
Q 011979 414 --SSSELADQLLMLFKG 428 (473)
Q Consensus 414 --~~~~la~~i~~l~~~ 428 (473)
+.+.+.+...+.+..
T Consensus 334 ~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 334 PLDAEILSAVVLERLTK 350 (385)
T ss_pred CCchHHHHHHHHHHHhc
Confidence 466777776666554
No 197
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=70.23 E-value=73 Score=31.48 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=81.0
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-HHHHHHHHHc
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEKIRRL 338 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~l~~~~~~~ 338 (473)
.++.++.=.+.++++.|+++++.- ...+.+-..|.|... -....+.+..
T Consensus 80 ~vl~v~~dsp~~t~~eli~~ak~~------------------------------p~~~~~g~~g~g~~~hl~~~~l~~~~ 129 (274)
T PF03401_consen 80 NVLVVRADSPYKTLEELIEYAKAN------------------------------PGKLTFGSSGPGSSDHLAAALLAKAA 129 (274)
T ss_dssp EEEEEETTSS-SSHHHHHHHHHCS------------------------------CCC-EEEESSTTSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccHHHHHHHHHhC------------------------------CCCeEEEecCCCchHHHHHHHHHHHh
Confidence 667777788899999999998872 223555555555322 2234456666
Q ss_pred CC--CcEEEecCCCCcccHHHHHhc-CcEEEEeccCCCCCCCcHHHHHHHhcCC--cEEEec---cC-----------cc
Q 011979 339 RL--KRVAFRTMWLSAEDYPLLLGS-ADLGVCLHTSSSGLDLPMKVVDMFGCGL--PVCAVS---YS-----------CI 399 (473)
Q Consensus 339 ~l--~~V~~~g~~v~~~~i~~~l~~-adi~v~~~~~s~~e~~p~kv~Eama~G~--PvI~~~---~~-----------~~ 399 (473)
|+ ..|-+-|. .+-+..++.. .|+.+.. +.....+...|. |+.+.. .. |.
T Consensus 130 G~~~~~Vpy~G~---~~~~~allgG~vd~~~~~---------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~ 197 (274)
T PF03401_consen 130 GIKFTHVPYDGG---AEALTALLGGHVDAAFGS---------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGY 197 (274)
T ss_dssp T---EEEE-SSH---HHHHHHHHTTSSSEEEEE---------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-
T ss_pred CCceEEEEeCCc---cHHHHHHhCCeeeEEeec---------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCc
Confidence 76 46666665 5666666655 6776651 224455555663 333322 11 11
Q ss_pred ccceecCCceEEeC--C----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011979 400 EELVKVDKNGLLFS--S----SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 459 (473)
Q Consensus 400 ~e~i~~~~~G~~~~--~----~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 459 (473)
.++.-..-.|++.+ . .+.|.+++.+.++ +++..+.+.+.+.... +.-.+++.+.
T Consensus 198 ~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~----~pe~~~~~~~~g~~~~--~~~~~~~~~~ 257 (274)
T PF03401_consen 198 PDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALE----DPEFQEFLEKMGLEPV--YMDGEEFDAF 257 (274)
T ss_dssp TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-----HHHHHHHHHHTEEEE--CESHHHHHHH
T ss_pred cceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhC----CHHHHHHHHHCCCcCC--CCCHHHHHHH
Confidence 12222223466654 2 4556666666666 4888777777766543 4434444433
No 198
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=70.22 E-value=57 Score=33.53 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=77.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC---CCcccHH----HHHhcCcEEEEeccCCCCCCCcHHHHHHHhc
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---LSAEDYP----LLLGSADLGVCLHTSSSGLDLPMKVVDMFGC 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~---v~~~~i~----~~l~~adi~v~~~~~s~~e~~p~kv~Eama~ 387 (473)
.+-+++++|.|...+..-+...+.|..+|.+...- ++.++.. .+...+|+.+.. +++.+-+.|....|.+..
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~-t~~Tas~~p~i~~~~~~~ 251 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFG-SSESAYAFPHLSWESLAD 251 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEc-CCcCCCCCceeeHHHHhh
Confidence 45699999999876666666677777778887652 1234443 667899999982 112444457666776653
Q ss_pred CCcEEEeccCccccce--ecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 388 GLPVCAVSYSCIEELV--KVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 388 G~PvI~~~~~~~~e~i--~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
-.+-+.-|.+-.+++- ... .|...=|+|+|.+...+=.. .|++....+.... +..-.+-|+.+-++.
T Consensus 252 ~~~r~~iDLAvPRdId~v~~~-~~v~Ly~iDdL~~i~~~n~~-------~R~~~~~~ae~iI-~~~~~~~~~~~~~~~ 320 (338)
T PRK00676 252 IPDRIVFDFNVPRTFPWSETP-FPHRYLDMDFISEWVQKHLQ-------CRKEVNNKHKLSL-REAAYKQWESYEKKL 320 (338)
T ss_pred ccCcEEEEecCCCCCcccccc-CCcEEEEhHHHHHHHHHHHH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3224556655555542 112 22222256666555544333 3444444444444 222334566655554
No 199
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.80 E-value=1.2e+02 Score=33.77 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=83.2
Q ss_pred CCCEEEEEEcCCC-ChHHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCc
Q 011979 314 YPRLLFIITGKGP-DKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 390 (473)
Q Consensus 314 ~~~~~l~ivG~g~-~~~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~P 390 (473)
.|+-.|++.-... -...++..+.++|+ ++|.|..- ...+|=..-...||+++=.. ...|.+- -+|.+.+|+|
T Consensus 786 VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~v-a~k~eHvrr~~LaDv~LDTp-lcnGhTT---g~dvLw~GvP 860 (966)
T KOG4626|consen 786 VPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPV-AAKEEHVRRGQLADVCLDTP-LCNGHTT---GMDVLWAGVP 860 (966)
T ss_pred CCcceeEEEeccccchHHHHHHHHHhCCCccceeeccc-cchHHHHHhhhhhhhcccCc-CcCCccc---chhhhccCCc
Confidence 5777777655321 23678999999999 68999876 66777778888899988610 1134333 3688899999
Q ss_pred EEEeccCcccc-----ceecCCce-EEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 391 VCAVSYSCIEE-----LVKVDKNG-LLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 391 vI~~~~~~~~e-----~i~~~~~G-~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+|+-.....+. .+..-+.| ++..+-+|..+.-.++..+ .+.+++++...+...
T Consensus 861 mVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd----~~~L~~lr~~l~~~r 919 (966)
T KOG4626|consen 861 MVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATD----KEYLKKLRAKLRKAR 919 (966)
T ss_pred eeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcC----HHHHHHHHHHHHHHh
Confidence 99865322211 11111222 3345788888888888774 778888888777654
No 200
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=63.75 E-value=66 Score=34.00 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecC---------------CCCcccHHHHHhcCcEEEEeccCCCCCCCcH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTM---------------WLSAEDYPLLLGSADLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~---------------~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~ 379 (473)
.+-+++++|.|..-+-.-+.....|..+|.+.+. .++.+++..++..+|+.+.. +.+...-++.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss-Tsa~~~ii~~ 255 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS-TSAPHPIITR 255 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe-cCCCccccCH
Confidence 3457999998864333333333333334444332 25568999999999999982 1222222333
Q ss_pred HHHH-HHhcCCcEEEeccCccccce
Q 011979 380 KVVD-MFGCGLPVCAVSYSCIEELV 403 (473)
Q Consensus 380 kv~E-ama~G~PvI~~~~~~~~e~i 403 (473)
..+| ++..-...+..|.+.++++-
T Consensus 256 ~~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 256 EMVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred HHHHHHHhcccCeEEEEecCCCCCC
Confidence 3333 33433446777877666643
No 201
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=63.09 E-value=1e+02 Score=32.50 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=72.2
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
..++..|.+.+...+.++-.-...||+++.. .+|++.++++-..+...
T Consensus 44 ~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~------------------------------~~P~~~ilvTt~T~Tg~-- 91 (419)
T COG1519 44 PVKPEGPLVWIHAASVGEVLAALPLVRALRE------------------------------RFPDLRILVTTMTPTGA-- 91 (419)
T ss_pred CCCCCCCeEEEEecchhHHHHHHHHHHHHHH------------------------------hCCCCCEEEEecCccHH--
Confidence 3456677899999999988777777777665 27999999988655432
Q ss_pred HHHHHHcCCCcEEEecCCCCccc---HHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 332 EEKIRRLRLKRVAFRTMWLSAED---YPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 332 ~~~~~~~~l~~V~~~g~~v~~~~---i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
+...+.++- .+... + +|.+. +..+++ .-|++|+ ...|-+|+.+.|+-..|+|++-.+
T Consensus 92 e~a~~~~~~-~v~h~-Y-lP~D~~~~v~rFl~~~~P~l~Ii----~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 92 ERAAALFGD-SVIHQ-Y-LPLDLPIAVRRFLRKWRPKLLII----METELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred HHHHHHcCC-CeEEE-e-cCcCchHHHHHHHHhcCCCEEEE----EeccccHHHHHHHHHcCCCEEEEe
Confidence 333444442 22221 1 44443 334443 4688887 677889999999999999999876
No 202
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=61.82 E-value=23 Score=38.65 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=78.1
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~ 336 (473)
++.-++|.=.-..+++-+..++++.+. -.++-.+.+.......+-.
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~-------------------------------~eih~tV~~~~~~~~~~P~--- 322 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKY-------------------------------MEIHGTVYDEPQRPPNVPS--- 322 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhh-------------------------------cEEEEEeccCCCCCcccch---
Confidence 344566665556677777777777653 2366666553321222232
Q ss_pred HcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccc----------------
Q 011979 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE---------------- 400 (473)
Q Consensus 337 ~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~---------------- 400 (473)
-|.=+|. ++.+|+..+++.|-++|=+- ...| |-+-+||+|.|+|.|-.......
T Consensus 323 -----~V~NHG~-l~~~ef~~lL~~akvfiGlG--fP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~ 392 (559)
T PF15024_consen 323 -----FVKNHGI-LSGDEFQQLLRKAKVFIGLG--FPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLRE 392 (559)
T ss_pred -----hhhhcCc-CCHHHHHHHHHhhhEeeecC--CCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcce
Confidence 3444566 88999999999999999742 2233 23779999999999987532111
Q ss_pred --------c-ceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 401 --------E-LVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 401 --------e-~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
| .+... .-+.++ |.+++-++|.+++..
T Consensus 393 ~~SQhPY~e~~iG~P-hVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 393 WTSQHPYAEEFIGEP-HVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred eccCChHHHhhCCCC-eEEEEcCCCHHHHHHHHHHHHhc
Confidence 1 12111 122233 688899999998876
No 203
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=61.61 E-value=25 Score=35.61 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC------------cccHHHHHhcCcEEEEeccCCCCCCCcHHH
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS------------AEDYPLLLGSADLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~------------~~~i~~~l~~adi~v~~~~~s~~e~~p~kv 381 (473)
+|+..++|-|.-.-...+++..+.+|+.-++.-|. + +++++..+.+.-++|+ +|=+++-++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~--nR~ETa~~v~~~~~~~yp~af~n~kvvvv-----~GwDy~~~~ 147 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGA--NRYETAEKVAKFFREDYPNAFKNVKVVVV-----YGWDYADAL 147 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCc--chHHHHHHHHHHHHhhchhhhcCeEEEEE-----eccccHHHH
Confidence 57655555444445678999999999754444332 2 2334445555566666 333355599
Q ss_pred HHHHhcC-CcEEEecc
Q 011979 382 VDMFGCG-LPVCAVSY 396 (473)
Q Consensus 382 ~Eama~G-~PvI~~~~ 396 (473)
+|+|--| +||+.++.
T Consensus 148 ~e~~k~~~~p~~~~n~ 163 (337)
T COG2247 148 MELMKEGIVPVILKNT 163 (337)
T ss_pred HHHHhcCcceeEeccc
Confidence 9999999 78887753
No 204
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=60.79 E-value=9.2 Score=33.05 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=43.9
Q ss_pred EEEEEEcC-CCChHHHHHHHHHcCCCcEEEecCCCC------------------------cccHHHHHhcCcEEEEeccC
Q 011979 317 LLFIITGK-GPDKESYEEKIRRLRLKRVAFRTMWLS------------------------AEDYPLLLGSADLGVCLHTS 371 (473)
Q Consensus 317 ~~l~ivG~-g~~~~~l~~~~~~~~l~~V~~~g~~v~------------------------~~~i~~~l~~adi~v~~~~~ 371 (473)
+++.|+|. |..-..+.+.+.+.. .+++.|. +. .+++..++..+|+.|-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~-v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf--- 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGA-VDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF--- 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEE-EETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEE-EecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEc---
Confidence 36677887 655455666655532 3444433 22 25689999999999873
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 372 SSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 372 s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
|..+..---+-.++.+|+|+|+-.+|.
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 322223335566778899999976554
No 205
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=59.33 E-value=53 Score=30.23 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
..+|+|++++--.+..+ ..+...+.++|.++.+|+.-..+. ...+..+.+. +....-...-.||.|+..|...++
T Consensus 58 ~~~dll~aTsmldLa~l--~gL~p~l~~~p~ilYFHENQl~YP-~~~~~~rd~~--~~~~ni~saLaAD~v~FNS~~nr~ 132 (168)
T PF12038_consen 58 HSYDLLFATSMLDLATL--RGLRPDLANVPKILYFHENQLAYP-VSPGQERDFQ--YGMNNIYSALAADRVVFNSAFNRD 132 (168)
T ss_pred cCCCEEEeeccccHHHH--HhhccCCCCCCEEEEEecCcccCC-CCCCcccccc--HHHHHHHHHHhceeeeecchhhHH
Confidence 67899999984333222 222234578999999998742221 1111222221 112222223368999999999888
Q ss_pred HHHH
Q 011979 180 ELAQ 183 (473)
Q Consensus 180 ~l~~ 183 (473)
.+..
T Consensus 133 sFL~ 136 (168)
T PF12038_consen 133 SFLD 136 (168)
T ss_pred HHHH
Confidence 7765
No 206
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=58.62 E-value=68 Score=27.61 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=49.0
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 328 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 328 ~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
.+...+.+++ +. .|.+... .+.+++.+.+..+|+++. .+.. .+.-.+++.+ -++-+|++...|...
T Consensus 8 ~~~~~~~l~~-~~-~v~~~~~-~~~~~~~~~l~~~d~ii~---~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 8 PDEEIERLEE-GF-EVEFCDS-PSEEELAERLKDADAIIV---GSGT-PLTAEVLEAA-PNLKLISTAGAGVDN 73 (133)
T ss_dssp SHHHHHHHHH-TS-EEEEESS-SSHHHHHHHHTTESEEEE---STTS-TBSHHHHHHH-TT-SEEEESSSSCTT
T ss_pred CHHHHHHHHC-Cc-eEEEeCC-CCHHHHHHHhCCCeEEEE---cCCC-CcCHHHHhcc-ceeEEEEEcccccCc
Confidence 3444555666 66 7888886 889999999999999998 2222 4677889888 889999987666553
No 207
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.22 E-value=48 Score=33.57 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=114.9
Q ss_pred HHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCC
Q 011979 156 YRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEG 235 (473)
Q Consensus 156 ~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 235 (473)
|..++-...|.+-.++.-.....+.|.+ .|+++..+-|..-+-..|... ...+
T Consensus 168 y~pwwlm~~rrc~~vf~rD~~Taq~L~~-rgvna~~vGnpmmD~L~p~~~--~~q~------------------------ 220 (412)
T COG4370 168 YMPWWLMLRRRCWAVFPRDALTAQHLAN-RGVNAAYVGNPMMDGLPPPER--DPQL------------------------ 220 (412)
T ss_pred hhhHHHHhcccceeeeccccccHHHHHh-cCCchhhccChhhccCCCccC--Cchh------------------------
Confidence 3333555556777788777777777876 588754443321122222110 0001
Q ss_pred CCccchhhhcccccccccCCCCCeEEEEEeec--cCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc
Q 011979 236 QKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
+-+..+.+-+.-|+- ....|+..++.++..+... ..+-|||--+.++-+.
T Consensus 221 -----------------l~~g~~viaLLPGsR~pea~~nl~~il~slcal~~~----------~a~vvfw~ai~~~lpl- 272 (412)
T COG4370 221 -----------------LLTGVPVIALLPGSRVPEAQTNLAVILGSLCALPAM----------FALVVFWAAIAPELPL- 272 (412)
T ss_pred -----------------hccCCceEEecCCCCChHHHhhHHHHHHHHhhhHHH----------HHHHHHHhccCcCCCH-
Confidence 122233344444554 3357888888877766553 1223666666644221
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
.+.=.-.++..++-.++.++-+|-.+. ++++.+.+++..||+.+- . -|+..=.+...|+|||+
T Consensus 273 ------~~l~~l~e~~gWq~~ad~~~kdnc~l~---lsqqsfadiLH~adaalg---m-----AGTAtEQavGLGkPvi~ 335 (412)
T COG4370 273 ------LLLWTLEERQGWQPLADRFGKDNCSLW---LSQQSFADILHAADAALG---M-----AGTATEQAVGLGKPVIG 335 (412)
T ss_pred ------HHHHHHHHhcCcchhhhhhccCceEEE---EeHHHHHHHHHHHHHHHH---h-----ccchHHHhhccCCceee
Confidence 110000011111222223333344443 568999999999999665 1 23466788999999999
Q ss_pred eccCccc------ccee--cCCceEEeCCHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhc
Q 011979 394 VSYSCIE------ELVK--VDKNGLLFSSSSELADQLLM-LFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 394 ~~~~~~~------e~i~--~~~~G~~~~~~~~la~~i~~-l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
-..-|.. +-=. -+..=.++.....-+..+.+ ++.+ ++..+.++.|+.+..
T Consensus 336 fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~d----p~r~~air~nGqrRi 394 (412)
T COG4370 336 FPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGD----PQRLTAIRHNGQRRI 394 (412)
T ss_pred cCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcC----hHHHHHHHhcchhhc
Confidence 8643322 1100 01112233444555666666 7774 888899998887644
No 208
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=57.99 E-value=1.1e+02 Score=30.35 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=73.8
Q ss_pred CEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccC-C-CC--CCCcHHHHHHHh---
Q 011979 316 RLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS-S-SG--LDLPMKVVDMFG--- 386 (473)
Q Consensus 316 ~~~l~ivG~g~--~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~-s-~~--e~~p~kv~Eama--- 386 (473)
.+.=+|+=+=| +.+.+.+.+++.|++.|.|..+-.|.+.+..+.+.++-+|..... . .| ..++..+.+...
T Consensus 115 GvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik 194 (259)
T PF00290_consen 115 GVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIK 194 (259)
T ss_dssp TEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHH
Confidence 35545555433 457788889999999999998767788899999888877764211 1 22 345555555543
Q ss_pred --cCCcEEEec---cC-ccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 387 --CGLPVCAVS---YS-CIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 387 --~G~PvI~~~---~~-~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.+|+++-= .. ....+. .+..|+++.+ .+.+.|.+-.++ ..+..+++.+.++++.
T Consensus 195 ~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS--a~v~~i~~~~~~---~~~~~~~~~~~~~~lk 255 (259)
T PF00290_consen 195 KHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS--AFVKIIEENGDD---AEKFLKELKEFVRELK 255 (259)
T ss_dssp HTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH--HHHHHHHHTCCH---HHHHHHHHHHHHHHHH
T ss_pred hhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH--HHHHHHHHcccc---HHHHHHHHHHHHHHHH
Confidence 479998862 22 233444 7889999984 345555442221 2334455555555543
No 209
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=57.09 E-value=1.1e+02 Score=29.16 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=49.3
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcE--EEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRV--AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V--~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
-.++++|..+. ..-+++.++..|...| +|+|+-+.--.. .-+..=|+.++. ....+ ...+.||..+|.|+|+
T Consensus 68 ~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~-~~~~~Pdliiv~--dp~~~--~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 68 EKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSL-KGYIEPDVVVVT--DPRGD--AQAVKEAIEVGIPVVA 142 (204)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcch-hccCCCCEEEEE--CCccc--HHHHHHHHHhCCCEEE
Confidence 46888886653 3456666777664222 455552322222 223456777762 12222 5699999999999999
Q ss_pred e-ccCccccce
Q 011979 394 V-SYSCIEELV 403 (473)
Q Consensus 394 ~-~~~~~~e~i 403 (473)
- |..+-...|
T Consensus 143 ivDTn~dp~~V 153 (204)
T PRK04020 143 LCDTDNLTSNV 153 (204)
T ss_pred EEeCCCCcccC
Confidence 6 565555554
No 210
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=51.98 E-value=78 Score=31.15 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHcCC--CcEE-EecCCCCcccHHHHHhcCcEEEEeccCCCCC-CCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 326 PDKESYEEKIRRLRL--KRVA-FRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 326 ~~~~~l~~~~~~~~l--~~V~-~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e-~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
|..+.++ .+.++|+ +++. ..|+ .+.+.=..+++...+-++..+.|-+. ++.-|+--|+.+|+|||...-+....
T Consensus 159 P~~~~l~-~~~~~G~~~~~iia~~gP-fs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~ 236 (256)
T TIGR00715 159 PYPQALA-QALKLGFPSDRIIAMRGP-FSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP 236 (256)
T ss_pred CCchhhH-HHHHcCCChhcEEEEeCC-CCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4444455 7888888 4544 4466 77777777887654444433333332 67889999999999999987554211
Q ss_pred ceecCCceEEeCCHHHHHHHHHHHH
Q 011979 402 LVKVDKNGLLFSSSSELADQLLMLF 426 (473)
Q Consensus 402 ~i~~~~~G~~~~~~~~la~~i~~l~ 426 (473)
.+-.+++.+++.+.+.+++
T Consensus 237 ------~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 237 ------GVAIFDDISQLNQFVARLL 255 (256)
T ss_pred ------CCccCCCHHHHHHHHHHhc
Confidence 1245677888887776653
No 211
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=50.70 E-value=78 Score=28.98 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=57.4
Q ss_pred cCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCC-----------CcccHHHHHhcCcEEEE--eccCCCCCCCcH
Q 011979 313 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL-----------SAEDYPLLLGSADLGVC--LHTSSSGLDLPM 379 (473)
Q Consensus 313 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v-----------~~~~i~~~l~~adi~v~--~~~~s~~e~~p~ 379 (473)
...+-++-|+|-|.--..+-+.++.+|. +|....+.. ...++.+++..||+.++ |.++....-+.-
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeee
Confidence 3456789999999877778888888886 555554422 24678899999999998 333333444778
Q ss_pred HHHHHHhcCCcEEEec
Q 011979 380 KVVDMFGCGLPVCAVS 395 (473)
Q Consensus 380 kv~Eama~G~PvI~~~ 395 (473)
..++.|--|.-+|-+.
T Consensus 112 ~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVA 127 (178)
T ss_dssp HHHHTSTTTEEEEESS
T ss_pred eeeeccccceEEEecc
Confidence 8999998887666654
No 212
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.28 E-value=1.3e+02 Score=28.83 Aligned_cols=131 Identities=12% Similarity=0.022 Sum_probs=72.7
Q ss_pred eEEEEEecCCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHH
Q 011979 6 RACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (473)
+++|+..| |+.+ .|..|+++ ||+|.+|-................+++.... .. ...+.+.
T Consensus 2 ~iiIiG~G------~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~-----t~-------~~~L~~a 62 (225)
T COG0569 2 KIIIIGAG------RVGRSVARELSEE-GHNVVLIDRDEERVEEFLADELDTHVVIGDA-----TD-------EDVLEEA 62 (225)
T ss_pred EEEEECCc------HHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEEEecC-----CC-------HHHHHhc
Confidence 34555444 4444 46788887 9999998654332211111123444444441 10 1111111
Q ss_pred HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCe-EEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA-FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
-..+.|++++-...-.....++.++.+..++| +|.-.++..+. + . .+..
T Consensus 63 -------------gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~-------------~---~-~~~~ 112 (225)
T COG0569 63 -------------GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHE-------------K---V-LEKL 112 (225)
T ss_pred -------------CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHH-------------H---H-HHHc
Confidence 13789988876655455565677777766766 45566655210 0 0 1111
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGI 187 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~ 187 (473)
-+|.++.....+..++.+....
T Consensus 113 --g~~~ii~Pe~~~~~~l~~~i~~ 134 (225)
T COG0569 113 --GADVIISPEKLAAKRLARLIVT 134 (225)
T ss_pred --CCcEEECHHHHHHHHHHHHhcC
Confidence 2789999999999888876433
No 213
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=50.10 E-value=82 Score=30.82 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCEEEEEEcC--CCC---hHHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcCcEEEEeccCCC----------CC
Q 011979 315 PRLLFIITGK--GPD---KESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSSS----------GL 375 (473)
Q Consensus 315 ~~~~l~ivG~--g~~---~~~l~~~~~~~~l~~V~~~g~~----v~~~~i~~~l~~adi~v~~~~~s~----------~e 375 (473)
++-++.++.. ++. .+.+.+..+++|...|..+... .+.++..+.+.+||+.++ ..- ..
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~---~GGnq~~l~~~l~~t 103 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFF---TGGDQLRITSLLGDT 103 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEE---eCCCHHHHHHHHcCC
Confidence 4456666653 322 2456677788888666665430 123456788999999998 321 11
Q ss_pred CCcHHHHHHHhcCCcEEEeccCc
Q 011979 376 DLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 376 ~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
++--.+-++...|.|++.+..|.
T Consensus 104 ~l~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 104 PLLDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred cHHHHHHHHHHcCCeEEEccHHH
Confidence 23345678999999999987554
No 214
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.24 E-value=49 Score=27.63 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=45.7
Q ss_pred EEEEcCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 319 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 319 l~ivG~g~~~----~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++++|.|-.. +.+++.+++.|++ +.+.- .+..+++.....+|+.+.- |-...-+.-.--.+-..|+||...
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~-~~i~a--~~~~e~~~~~~~~Dvill~--PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVP-LEAAA--GAYGSHYDMIPDYDLVILA--PQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEE--eeHHHHHHhccCCCEEEEc--ChHHHHHHHHHHHhhhcCCCEEEe
Confidence 4666878554 6778888888874 44442 4678999999999988871 112211222222234558899887
Q ss_pred c
Q 011979 395 S 395 (473)
Q Consensus 395 ~ 395 (473)
+
T Consensus 79 ~ 79 (99)
T cd05565 79 T 79 (99)
T ss_pred C
Confidence 5
No 215
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=47.24 E-value=2.5e+02 Score=26.39 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=43.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccH-----------------HHHHhcCcEEEEeccCCCCCCC
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDY-----------------PLLLGSADLGVCLHTSSSGLDL 377 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i-----------------~~~l~~adi~v~~~~~s~~e~~ 377 (473)
.+-+++|+|.|......-+...+.| .+|.+..+ -..+++ ...+..+|+++. .+.....
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~-~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlVia---aT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP-ELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIA---ATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC-CCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEE---cCCCHHH
Confidence 3457888998864433223333333 36666654 212222 234566777766 2222223
Q ss_pred cHHHHHHHhcCCcEEEeccCccc
Q 011979 378 PMKVVDMFGCGLPVCAVSYSCIE 400 (473)
Q Consensus 378 p~kv~Eama~G~PvI~~~~~~~~ 400 (473)
-..+.+....|.+|-+.+.+...
T Consensus 84 N~~i~~~a~~~~lvn~~d~~~~~ 106 (202)
T PRK06718 84 NEQVKEDLPENALFNVITDAESG 106 (202)
T ss_pred HHHHHHHHHhCCcEEECCCCccC
Confidence 34666666778888887754433
No 216
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=46.72 E-value=1.5e+02 Score=30.55 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=63.2
Q ss_pred CEEEEEEcCCCC---hHHHHHHHHHcCCCcEEEecCC-----CCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhc
Q 011979 316 RLLFIITGKGPD---KESYEEKIRRLRLKRVAFRTMW-----LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGC 387 (473)
Q Consensus 316 ~~~l~ivG~g~~---~~~l~~~~~~~~l~~V~~~g~~-----v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~ 387 (473)
.....++..-.. +..+-+.+.++ -.|...|.. .+.++...+++..-+.+..-.+....-..-|+.+|+.+
T Consensus 176 ~~~~w~~Snc~~~~~R~~~~~~L~~~--~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~ 253 (349)
T PF00852_consen 176 KLAAWIVSNCNPHSGREEYVRELSKY--IPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLA 253 (349)
T ss_dssp EEEEE--S-S--H-HHHHHHHHHHTT--S-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHT
T ss_pred ceEEEEeeCcCCcccHHHHHHHHHhh--cCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHC
Confidence 344445443221 33444444444 268888884 24556889999999999864443333345599999999
Q ss_pred CC-cEEEec-cCccccceecCCceEE-e---CCHHHHHHHHHHHHhCCCCCHHHHHH
Q 011979 388 GL-PVCAVS-YSCIEELVKVDKNGLL-F---SSSSELADQLLMLFKGFPDDSDVLKK 438 (473)
Q Consensus 388 G~-PvI~~~-~~~~~e~i~~~~~G~~-~---~~~~~la~~i~~l~~~~~~~~~~~~~ 438 (473)
|+ ||+--. .....+++-. +.++ + +++++||+.|..+.++ ++.+.+
T Consensus 254 g~VPI~~G~~~~~~~~~~P~--~SfI~~~df~s~~~La~yl~~l~~n----~~~Y~~ 304 (349)
T PF00852_consen 254 GTVPIYWGPPRPNYEEFAPP--NSFIHVDDFKSPKELADYLKYLDKN----DELYNK 304 (349)
T ss_dssp TSEEEEES---TTHHHHS-G--GGSEEGGGSSSHHHHHHHHHHHHT-----HHHHH-
T ss_pred CeEEEEECCEecccccCCCC--CCccchhcCCCHHHHHHHHHHHhcC----HHHHhh
Confidence 95 555542 4556666533 3344 3 3699999999999885 666654
No 217
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.67 E-value=3e+02 Score=27.17 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=80.5
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEK 334 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~~~ 334 (473)
-|.+++.-.+.-...|++.+++.++.. .+.=+++=+=| +.+++.+.
T Consensus 92 ~p~vlm~Y~N~i~~~G~e~F~~~~~~a--------------------------------GvdgviipDLP~ee~~~~~~~ 139 (263)
T CHL00200 92 APIVIFTYYNPVLHYGINKFIKKISQA--------------------------------GVKGLIIPDLPYEESDYLISV 139 (263)
T ss_pred CCEEEEecccHHHHhCHHHHHHHHHHc--------------------------------CCeEEEecCCCHHHHHHHHHH
Confidence 453433334444566888877777653 34444444433 34677888
Q ss_pred HHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEecc-CC-CC--CCCcHHHHHHH-----hcCCcEEEeccC-----ccc
Q 011979 335 IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT-SS-SG--LDLPMKVVDMF-----GCGLPVCAVSYS-----CIE 400 (473)
Q Consensus 335 ~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~-~s-~~--e~~p~kv~Eam-----a~G~PvI~~~~~-----~~~ 400 (473)
++++|++.|.+..+--+.+.+..+.+.|+-+|...+ +. .| ..++..+-|.. .+++|+++- .| ...
T Consensus 140 ~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG-FGI~~~e~~~ 218 (263)
T CHL00200 140 CNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG-FGISTSEQIK 218 (263)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE-CCcCCHHHHH
Confidence 999999999999885567899999999994444321 11 22 34666777777 678999873 22 223
Q ss_pred cceecCCceEEeCC
Q 011979 401 ELVKVDKNGLLFSS 414 (473)
Q Consensus 401 e~i~~~~~G~~~~~ 414 (473)
++...+..|+++.+
T Consensus 219 ~~~~~GADGvVVGS 232 (263)
T CHL00200 219 QIKGWNINGIVIGS 232 (263)
T ss_pred HHHhcCCCEEEECH
Confidence 44545578999985
No 218
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.99 E-value=2.8e+02 Score=26.61 Aligned_cols=77 Identities=12% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCCEEEEEEcCCCC--hHHH----HHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh-
Q 011979 314 YPRLLFIITGKGPD--KESY----EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG- 386 (473)
Q Consensus 314 ~~~~~l~ivG~g~~--~~~l----~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama- 386 (473)
.+++.+.++|.|.. .+.+ .+..++.+ .|+.++ ..|....+=|.+.-|.++
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~~----------------------pDfvi~-isPNpaaPGP~kARE~l~~ 85 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEFN----------------------PDFVIY-ISPNPAAPGPKKAREILSD 85 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhcC----------------------CCEEEE-eCCCCCCCCchHHHHHHhh
Confidence 47899999999853 2222 23333333 344444 113334444778889888
Q ss_pred cCCcEEEe-ccCcc--ccceecCCceEEeC
Q 011979 387 CGLPVCAV-SYSCI--EELVKVDKNGLLFS 413 (473)
Q Consensus 387 ~G~PvI~~-~~~~~--~e~i~~~~~G~~~~ 413 (473)
+|.|+|.. +.++. .+.+++.+.|++.-
T Consensus 86 s~~PaiiigDaPg~~vkdeleeqGlGYIiv 115 (277)
T COG1927 86 SDVPAIIIGDAPGLKVKDELEEQGLGYIIV 115 (277)
T ss_pred cCCCEEEecCCccchhHHHHHhcCCeEEEe
Confidence 78998876 44443 35566677788763
No 219
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.63 E-value=1.5e+02 Score=27.55 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=37.0
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEE-EecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
-+||+++....-.+|.++ ..++.+++|++. ..+-... ++.. .+.+.++.+.+.+..|.|.+.|+..+
T Consensus 94 ~~P~~~i~~EtElWPnll---~~a~~~~ip~~LvNarls~~-----s~~~----~~~~~~~~r~~l~~f~~i~aqs~~da 161 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNLL---REAKRRGIPVVLVNARLSER-----SFRR----YRRFPFLFRPLLSRFDRILAQSEADA 161 (186)
T ss_dssp H--SEEEEES----HHHH---HH-----S-EEEEEE-----------------------HHHHHHGGG-SEEEESSHHHH
T ss_pred hCCCEEEEEccccCHHHH---HHHhhcCCCEEEEeeeeccc-----cchh----hhhhHHHHHHHHHhCCEEEECCHHHH
Confidence 579999888766677663 334556788765 3332210 1111 12224567777788999999999999
Q ss_pred HHHHHHhCCc
Q 011979 179 HELAQNWGIK 188 (473)
Q Consensus 179 ~~l~~~~g~~ 188 (473)
+.+.+ .|.+
T Consensus 162 ~r~~~-lG~~ 170 (186)
T PF04413_consen 162 ERFRK-LGAP 170 (186)
T ss_dssp HHHHT-TT-S
T ss_pred HHHHH-cCCC
Confidence 99987 5765
No 220
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=45.56 E-value=1.6e+02 Score=31.11 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC----------------CCcccHHHHHhcCcEEEEeccCCCCCCCc
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW----------------LSAEDYPLLLGSADLGVCLHTSSSGLDLP 378 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~----------------v~~~~i~~~l~~adi~v~~~~~s~~e~~p 378 (473)
.+-+++++|.|......-..+...|..+|.+...- ++.+++...+..||+.|... ++.. |
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT-~a~~---~ 255 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAV-NVLE---Y 255 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECc-CCCC---e
Confidence 45678999988655444444555555455554431 23466778889999999831 2222 2
Q ss_pred HHHHHHHhcCCcEEEeccCccccc
Q 011979 379 MKVVDMFGCGLPVCAVSYSCIEEL 402 (473)
Q Consensus 379 ~kv~Eama~G~PvI~~~~~~~~e~ 402 (473)
+.-.| +.-+.|.+.-|.+-.+++
T Consensus 256 vi~~~-~~~~~~~~~iDLavPRdi 278 (414)
T PRK13940 256 IVTCK-YVGDKPRVFIDISIPQAL 278 (414)
T ss_pred eECHH-HhCCCCeEEEEeCCCCCC
Confidence 22233 345789999987665554
No 221
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=45.12 E-value=1.5e+02 Score=27.86 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=22.5
Q ss_pred EEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011979 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (473)
Q Consensus 9 i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~ 43 (473)
.+++|.-|+-+-|.++...|.+...-.-+|++..+
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD 76 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTD 76 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCc
Confidence 46667778888888888888665222344555443
No 222
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=44.59 E-value=1.1e+02 Score=31.68 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=81.3
Q ss_pred EEEEEEcCC---CChHHHHHHHHHcCC---CcEEEecCCCCcccHHHHHhc-CcEEEEeccCCCCCCCcHHHHHHHhcCC
Q 011979 317 LLFIITGKG---PDKESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGS-ADLGVCLHTSSSGLDLPMKVVDMFGCGL 389 (473)
Q Consensus 317 ~~l~ivG~g---~~~~~l~~~~~~~~l---~~V~~~g~~v~~~~i~~~l~~-adi~v~~~~~s~~e~~p~kv~Eama~G~ 389 (473)
+..+.+-.. .+..++...+..+.+ ....|-|. -+++.+++. .|++|. .-+.-+.-.--+|++--|=
T Consensus 223 v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR----~~~p~fla~~tD~VvS---HqWeN~lNYlY~daLyggY 295 (364)
T PF10933_consen 223 VEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGR----FDFPDFLAQHTDAVVS---HQWENPLNYLYYDALYGGY 295 (364)
T ss_pred cceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeee----cChHHHHHhCCCEEEe---ccccchhhHHHHHHHhcCC
Confidence 344444433 234667777887777 35777765 788888877 788886 3455456668899999999
Q ss_pred cEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011979 390 PVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 451 (473)
Q Consensus 390 PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
|.|-. +.++. +.|+.++ |..+=+++|.+.+.. -....+.+++++++.....+
T Consensus 296 PLVHN-----S~~l~--d~GYYY~~fD~~~G~r~L~~A~~~---HD~~~~~Y~~ra~~~l~~~~ 349 (364)
T PF10933_consen 296 PLVHN-----SPLLK--DVGYYYPDFDAFEGARQLLRAIRE---HDADLDAYRARARRLLDRLS 349 (364)
T ss_pred CcccC-----cchhc--ccCcCCCCccHHHHHHHHHHHHHH---ccccHHHHHHHHHHHHHhhC
Confidence 99985 34453 3899997 677788888887765 34566777778777664433
No 223
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=44.48 E-value=2.2e+02 Score=30.03 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC---------------CCcccHHHHHhcCcEEEEeccCCCCCCCcH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~---------------v~~~~i~~~l~~adi~v~~~~~s~~e~~p~ 379 (473)
++-++.|+|.|+--...-..+...|..+|.+.+.- ++.++..+.+..+|+.+.. +++...-+.-
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a-T~s~~~ii~~ 257 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS-TGAPHPIVSK 257 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC-CCCCCceEcH
Confidence 45688999988765555555555665555555431 2234566777899999983 2222212344
Q ss_pred HHHHHHhcC--CcEEEeccCccccc
Q 011979 380 KVVDMFGCG--LPVCAVSYSCIEEL 402 (473)
Q Consensus 380 kv~Eama~G--~PvI~~~~~~~~e~ 402 (473)
..++.+..+ .|.+..|.+..+++
T Consensus 258 e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 258 EDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred HHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 455555443 57788777655543
No 224
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=42.94 E-value=4e+02 Score=30.51 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=94.5
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hH---HHHHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KE---SYEEK 334 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~---~l~~~ 334 (473)
+++-+-++..-||...=+.|+.++.+. +.+ -.+.+.++.+..+.. .+ +++..
T Consensus 278 lilgvD~~d~~kg~~~Kl~a~e~~L~~---------------~pe--------~~~kVvliqi~~~~~~~~~~v~~~k~~ 334 (732)
T KOG1050|consen 278 LILGVDRLDSIKGIQLKLLAFEQFLEE---------------YPE--------WIDKVVLIQIENPKRTDGKEVEELKFC 334 (732)
T ss_pred eEecccccccccCchHHHHHHHHHHHh---------------Chh--------hhceEEEEEEecCCcccchHHHHHHHH
Confidence 777777888888887667777776552 111 123455555553321 11 22222
Q ss_pred ----HHHcC----C---CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC----CcEEEeccCcc
Q 011979 335 ----IRRLR----L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG----LPVCAVSYSCI 399 (473)
Q Consensus 335 ----~~~~~----l---~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G----~PvI~~~~~~~ 399 (473)
+++.+ - ..|.++-..++..++-+++.-||+++. .+..+|...+.+|+.+|. .+.|.+.+.|-
T Consensus 335 v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v---~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~ 411 (732)
T KOG1050|consen 335 VSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPV---TSWRDGMNLVFLEYILCQENKKSVLVLSEFIGD 411 (732)
T ss_pred hHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheee---cccccccchhhhHHHHhhcccCCceEEeeeccc
Confidence 22221 1 235555444899999999999999999 889999999999999885 67888887777
Q ss_pred ccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 400 EELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 400 ~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+..+++. .++. |.++++..|...++.
T Consensus 412 ~~tl~d~a--ivvnpw~~~~~~~~i~~al~~ 440 (732)
T KOG1050|consen 412 DTTLEDAA--IVVNPWDGDEFAILISKALTM 440 (732)
T ss_pred cccccccC--EEECCcchHHHHHHHHHHhhc
Confidence 77664332 3333 789999999999886
No 225
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=40.45 E-value=1e+02 Score=31.87 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=64.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC-
Q 011979 317 LLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG- 388 (473)
Q Consensus 317 ~~l~ivG~g~~~~~l~~~~~~~---~l~----~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G- 388 (473)
-.++|++.|.......+.++.+ |++ ++.++-+ ++.+.+.+.+++++-+|........-+++-.+.|+++-.
T Consensus 234 ~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~P-ld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~ 312 (355)
T PTZ00182 234 KDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRP-WDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDC 312 (355)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCC-CCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 4677777776555555555544 442 4566666 788889999999988887655555567899999988664
Q ss_pred -----CcEEEeccCccccceecCC--ceEEeCCHHHHHHHHHHH
Q 011979 389 -----LPVCAVSYSCIEELVKVDK--NGLLFSSSSELADQLLML 425 (473)
Q Consensus 389 -----~PvI~~~~~~~~e~i~~~~--~G~~~~~~~~la~~i~~l 425 (473)
.|+.-....+ ..+-... -..+..+.+.+.+++..+
T Consensus 313 ~~~l~~pv~ri~~~d--~~~p~~~~le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 313 FLYLEAPIKRVCGAD--TPFPYAKNLEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred hhhcCCCeEEeCCCC--ccCCCChHHHHHhCCCHHHHHHHHHHh
Confidence 3555432211 1121111 122345677777777665
No 226
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.26 E-value=3.8e+02 Score=26.24 Aligned_cols=126 Identities=8% Similarity=0.084 Sum_probs=74.1
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEK 334 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~~~ 334 (473)
-|.+++..-+.-...|.+.+++.++.. .+.-+++=+-| +..++.+.
T Consensus 88 ~plv~m~Y~Npi~~~G~e~f~~~~~~a--------------------------------GvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 88 IPIGLLTYYNLIFRKGVEEFYAKCKEV--------------------------------GVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred CCEEEEEeccHHhhhhHHHHHHHHHHc--------------------------------CCCEEEECCCChHHHHHHHHH
Confidence 454444444444456777777776653 23333333333 34667778
Q ss_pred HHHcCCCcEEEecCCCCcccHHHHHhcCc--EEEEeccCCCCC--CCcHHHHHHHh-----cCCcEEEec-c---Ccccc
Q 011979 335 IRRLRLKRVAFRTMWLSAEDYPLLLGSAD--LGVCLHTSSSGL--DLPMKVVDMFG-----CGLPVCAVS-Y---SCIEE 401 (473)
Q Consensus 335 ~~~~~l~~V~~~g~~v~~~~i~~~l~~ad--i~v~~~~~s~~e--~~p~kv~Eama-----~G~PvI~~~-~---~~~~e 401 (473)
++++|++.+.+..+--+.+++..+...++ ++++......|. .++..+.|.+. .++|+++-- . .....
T Consensus 136 ~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~ 215 (256)
T TIGR00262 136 AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ 215 (256)
T ss_pred HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH
Confidence 89999988878877455678899999999 444422111232 24444555544 578877631 1 12334
Q ss_pred ceecCCceEEeCC
Q 011979 402 LVKVDKNGLLFSS 414 (473)
Q Consensus 402 ~i~~~~~G~~~~~ 414 (473)
+...+..|+++.+
T Consensus 216 ~~~~GADgvVvGS 228 (256)
T TIGR00262 216 AIDAGADGVIVGS 228 (256)
T ss_pred HHHcCCCEEEECH
Confidence 4555678898874
No 227
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=39.17 E-value=95 Score=29.34 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=49.8
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCC--cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEE
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI 392 (473)
.-+++++|..+. ..-+++.++..|.. +=+|+|+-+. .-...-+..=|+.++ ..... -...+-||..+|.|+|
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLT-N~~~~~~~~Pdlliv---~dp~~-~~~Av~EA~~l~IP~I 135 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFT-NPMQKAFREPEVVVV---TDPRA-DHQALKEASEVGIPIV 135 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCC-CccccccCCCCEEEE---ECCcc-ccHHHHHHHHcCCCEE
Confidence 347889997653 34456666666642 2245555222 112223566778777 23221 2459999999999999
Q ss_pred Ee-ccCccccce
Q 011979 393 AV-SYSCIEELV 403 (473)
Q Consensus 393 ~~-~~~~~~e~i 403 (473)
+- +..+-...|
T Consensus 136 ai~DTn~dp~~v 147 (196)
T TIGR01012 136 ALCDTDNPLRYV 147 (196)
T ss_pred EEeeCCCCCccC
Confidence 96 565555555
No 228
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=38.56 E-value=4.8e+02 Score=28.09 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=71.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHH-HcCCC-cEEEecCC---CCcccHHHHHhcC--cEEEEeccCCCCCCCcHH-HHHHHh
Q 011979 315 PRLLFIITGKGPDKESYEEKIR-RLRLK-RVAFRTMW---LSAEDYPLLLGSA--DLGVCLHTSSSGLDLPMK-VVDMFG 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~-~~~l~-~V~~~g~~---v~~~~i~~~l~~a--di~v~~~~~s~~e~~p~k-v~Eama 386 (473)
...++.|+|+......+-+... ++|.+ .+...+.- -+..++.+.+... |+.+= |+.+ + .+.-..
T Consensus 279 ~~k~vaI~gd~d~~~gl~~fL~~ElGm~~~~~~t~~v~~~~D~~~i~~~i~~~~p~ll~G----ss~e----r~~~a~~~ 350 (468)
T TIGR02014 279 GTARFGIVASETYARGIRHVLEDELGLPCLFSLARKAGSKTDNNAVRKEIVQKQPLVLYG----SMNE----KIYLAEAD 350 (468)
T ss_pred CCceEEEEcCHHHHHHHHHHHHHHCCCceEEEeecceeecCCHHHHHHHHhhcCCCEEEE----ChHh----HHHHHhcC
Confidence 3457889998666666666666 88884 22111210 2457788887774 44443 3322 2 121133
Q ss_pred cCCcEEEeccCc-cccceecCCceEE-eC---C-HHHHHHHHHH-HHhCCCCCHHHHHH-HHHHHHHhccccchHHHHHH
Q 011979 387 CGLPVCAVSYSC-IEELVKVDKNGLL-FS---S-SSELADQLLM-LFKGFPDDSDVLKK-LRNGTLEMGLSARWATEWEE 458 (473)
Q Consensus 387 ~G~PvI~~~~~~-~~e~i~~~~~G~~-~~---~-~~~la~~i~~-l~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~ 458 (473)
.++|+|....++ +.+.+.. ..++ +. . .+++.++|.+ |++-++.. .++.+ -...+ .......|+.+.+.
T Consensus 351 ~~~plIr~gfP~~i~dr~~~--~p~~GY~Ga~~ll~~I~N~l~d~l~~~~~~~-~~~~~~~~~~~-~~~~~~~w~~~a~~ 426 (468)
T TIGR02014 351 AKSRFIPASFPGAIIRRATG--TPFMGYSGATWLVQEVCNALFDTLFNILPIT-RRQDAAAATPS-RMHDPLPWDPEANA 426 (468)
T ss_pred CCCCeEEecCCcchhhhcCC--CceeechhHHHHHHHHHHHHHHhhhhhcCCc-ccccccccccc-cccCCCCCCHHHHH
Confidence 577998866664 3333322 2222 22 1 5666666544 33322212 21111 11111 12235789999888
Q ss_pred HHHHHHH
Q 011979 459 HAKPLIT 465 (473)
Q Consensus 459 ~~~~~~~ 465 (473)
.++++++
T Consensus 427 ~l~~~~~ 433 (468)
T TIGR02014 427 ILDRIVE 433 (468)
T ss_pred HHHhhhh
Confidence 8877744
No 229
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.30 E-value=1.1e+02 Score=29.87 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=47.5
Q ss_pred EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHH
Q 011979 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQL 422 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i 422 (473)
|...|+ .+.+.=..+++..++-++..+.|-+.++.-|+--|+.+|+|||.-.-+.... ..-.+.+.+++.+.+
T Consensus 171 iam~gP-fs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~------~~~~~~~~~e~~~~l 243 (248)
T PRK08057 171 IALRGP-FSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPY------ADREFEDVAELVAWL 243 (248)
T ss_pred EEeeCC-CCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC------CCcccCCHHHHHHHH
Confidence 333344 5555555666654444443344433468889999999999999987554221 113456788888777
Q ss_pred HHHH
Q 011979 423 LMLF 426 (473)
Q Consensus 423 ~~l~ 426 (473)
.+.+
T Consensus 244 ~~~~ 247 (248)
T PRK08057 244 RHLL 247 (248)
T ss_pred HHhh
Confidence 6653
No 230
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=37.27 E-value=80 Score=28.94 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEE
Q 011979 314 YPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 367 (473)
Q Consensus 314 ~~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~ 367 (473)
..+-+++|+|.|.. ...+-+...+.+. +|.+... ..+++.+.+..||+.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r--~~~~l~~~l~~aDiVIs 93 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS--KTKNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC--CchhHHHHHhhCCEEEE
Confidence 35679999999974 3335555555554 5777765 45789999999999998
No 231
>PLN02735 carbamoyl-phosphate synthase
Probab=36.90 E-value=7.5e+02 Score=29.81 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=25.0
Q ss_pred CCCeEEEEEecC--CCCChhH---HHHHHHHHhhCCCcEEEEecCCCC
Q 011979 3 RRGRACVVVLGD--LGRSPRM---QYQALSLARQMSLEVDVVAYGGSK 45 (473)
Q Consensus 3 ~~~~~~i~~~~~--~g~s~r~---~~~a~~L~~~~g~eV~vi~~~~~~ 45 (473)
++++++|+..|. +|.+.-. ..++..-++++|+++.++....+.
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npet 620 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPET 620 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 457777777765 3332221 123444444469999998865444
No 232
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=36.62 E-value=21 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=31.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEee
Q 011979 8 CVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 8 ~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~ 62 (473)
++...|.-|+-.=+.-.+..|.++ ||||.+.+...- .+.....|++++.++
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~---~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDF---RERVEAAGLEFVPIP 52 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGG---HHHHHHTT-EEEESS
T ss_pred EEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccc---eecccccCceEEEec
Confidence 344455444434444566777776 999998885432 234467899999988
No 233
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=36.49 E-value=3.8e+02 Score=28.27 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC---------------CCcccHHHHHhcCcEEEEeccCCCCCCCcH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~---------------v~~~~i~~~l~~adi~v~~~~~s~~e~~p~ 379 (473)
++-++.|+|.|+--...-..+...|..+|.+.+.- ++.++....+..+|+.+.. +++...-+.-
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~a-T~s~~~~i~~ 259 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISS-TGAPHPIIGK 259 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEEC-CCCCCcEEcH
Confidence 45688999988765555555555665566655441 1223455667889999983 2222211333
Q ss_pred HHHHHHhc---CCcEEEeccCccccc
Q 011979 380 KVVDMFGC---GLPVCAVSYSCIEEL 402 (473)
Q Consensus 380 kv~Eama~---G~PvI~~~~~~~~e~ 402 (473)
..++.+.. +.|.+..|.+..+++
T Consensus 260 ~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 260 GMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred HHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 34444432 468888887665543
No 234
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=35.97 E-value=1.2e+02 Score=30.36 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=52.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcc-----------cHHHHHhcCcEEEEeccCCC----------CC
Q 011979 317 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAE-----------DYPLLLGSADLGVCLHTSSS----------GL 375 (473)
Q Consensus 317 ~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~-----------~i~~~l~~adi~v~~~~~s~----------~e 375 (473)
.++.++|+...+-++-+...+.|. .|...|+ +.+ ...+.+..||+.++|..++. ..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~-~v~~~g~--~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGA-KVSLVGF--DQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCC-EEEEEec--cccccccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 578899966544555555566664 5665665 211 33577899999999743321 11
Q ss_pred CC--cHHHHHHHhcCCcEEEec-cCcccccee
Q 011979 376 DL--PMKVVDMFGCGLPVCAVS-YSCIEELVK 404 (473)
Q Consensus 376 ~~--p~kv~Eama~G~PvI~~~-~~~~~e~i~ 404 (473)
.+ ....++.|.-|.++++.. .+.+.+.+.
T Consensus 80 ~~~~~~~~l~~l~~~~~v~~G~~~~~~~~~~~ 111 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIFSGIANPYLKELAK 111 (296)
T ss_pred CCcchHHHHHhcCCCCEEEEecCCHHHHHHHH
Confidence 22 347899999998777653 233444443
No 235
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=35.84 E-value=1.5e+02 Score=21.13 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=40.8
Q ss_pred EEEEEEcC--CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 317 LLFIITGK--GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 317 ~~l~ivG~--g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
..+.+.|. +..++.+++++..+|- . +... ++ ..++.+|+ ++.. .+.+...|...|.|+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg-~--v~~~-~~--------~~~thvI~---~~~~--~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG-K--VTSS-VS--------KKTTHVIV---GSDA--GPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC-E--Eecc-cc--------CCceEEEE---CCCC--CchHHHHHHHcCCeEecH
Confidence 46788886 4778999999999983 1 2211 11 46677777 2222 122378889999999876
Q ss_pred c
Q 011979 395 S 395 (473)
Q Consensus 395 ~ 395 (473)
.
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 236
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=35.74 E-value=2.7e+02 Score=27.07 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=38.3
Q ss_pred CcEEEecC-CCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 341 KRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 341 ~~V~~~g~-~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
++|.+.|- -++.+++...+.+||++|+.=++..-.+...-+.+|-..|.|++..+..
T Consensus 151 P~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 208 (242)
T PTZ00408 151 PHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLE 208 (242)
T ss_pred CCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCC
Confidence 57777777 4566778888999999998422222222233345688899998887743
No 237
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.55 E-value=3.1e+02 Score=25.79 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=48.6
Q ss_pred CCEEEEEEcCCCC--h---HHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCC--------CCCCcHH
Q 011979 315 PRLLFIITGKGPD--K---ESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--------GLDLPMK 380 (473)
Q Consensus 315 ~~~~l~ivG~g~~--~---~~l~~~~~~~-~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--------~e~~p~k 380 (473)
++.++.++..... . ..+.+..+++ ++..+.+. . .+.++..+.+.+||+.++|= .+. .-++--.
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~-~-~~~~~~~~~l~~ad~I~l~G-G~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLH-L-FDTEDPLDALLEADVIYVGG-GNTFNLLAQWREHGLDAI 106 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEe-c-cCcccHHHHHhcCCEEEECC-chHHHHHHHHHHcCHHHH
Confidence 4567777775432 2 3355566677 66333222 2 23567789999999999942 110 0123335
Q ss_pred HHHHHhcCCcEEEeccC
Q 011979 381 VVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 381 v~Eama~G~PvI~~~~~ 397 (473)
+-++...|+|++.+..|
T Consensus 107 l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 107 LKAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHHCCCEEEEECHh
Confidence 55677789999998744
No 238
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=34.50 E-value=2.3e+02 Score=22.27 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEe
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFR 346 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~ 346 (473)
.++.++.+....+.+++++..++.+.+...+.
T Consensus 34 ~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~ 65 (95)
T PF13905_consen 34 DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVP 65 (95)
T ss_dssp TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEE
T ss_pred CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEe
Confidence 58999999988888899999999866555544
No 239
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=33.88 E-value=4.5e+02 Score=25.48 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=20.1
Q ss_pred EEecCCCCChh---HHHHHHHHHhhCCCcEEEEec
Q 011979 10 VVLGDLGRSPR---MQYQALSLARQMSLEVDVVAY 41 (473)
Q Consensus 10 ~~~~~~g~s~r---~~~~a~~L~~~~g~eV~vi~~ 41 (473)
.+.+--|+.+. ..++|..+++. |+.|.+|-.
T Consensus 107 ~vts~~~g~Gktt~a~nLA~~la~~-g~~VllID~ 140 (274)
T TIGR03029 107 AVVSAKSGEGCSYIAANLAIVFSQL-GEKTLLIDA 140 (274)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 34433444444 44677888886 999999863
No 240
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=33.50 E-value=4.5e+02 Score=25.35 Aligned_cols=81 Identities=9% Similarity=-0.113 Sum_probs=42.0
Q ss_pred CEEEEEEcCCCCh-HHHHHHHHHcCCCcEEEecCCCCcccHHH-----------------HHhcCcEEEEeccCCCCCCC
Q 011979 316 RLLFIITGKGPDK-ESYEEKIRRLRLKRVAFRTMWLSAEDYPL-----------------LLGSADLGVCLHTSSSGLDL 377 (473)
Q Consensus 316 ~~~l~ivG~g~~~-~~l~~~~~~~~l~~V~~~g~~v~~~~i~~-----------------~l~~adi~v~~~~~s~~e~~ 377 (473)
+.+++++|+|.-. ..++.+.+ .+ .+|++..+-+ .+++.. .+..+++.+.. ++..+--
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~-~g-A~VtVVap~i-~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaA--TdD~~vN 99 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK-KG-CYVYILSKKF-SKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIA--TDDEKLN 99 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CC-CEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEEC--CCCHHHH
Confidence 5679999999642 11222222 22 4677776522 233333 34556666651 2222212
Q ss_pred cHHHHHHHhcCCcEEEeccCcccc
Q 011979 378 PMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 378 p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
-...-+|-+.|.+|.+++.+...+
T Consensus 100 ~~I~~~a~~~~~lvn~vd~p~~~d 123 (223)
T PRK05562 100 NKIRKHCDRLYKLYIDCSDYKKGL 123 (223)
T ss_pred HHHHHHHHHcCCeEEEcCCcccCe
Confidence 224445557799999886544333
No 241
>PRK10494 hypothetical protein; Provisional
Probab=33.44 E-value=1.5e+02 Score=29.07 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCCEEEEEEcCCC------ChHHHHHHHHHcCCC--cEEEecCCCCcc------cHHHHHhcCcEEEEeccCCCCCCCcH
Q 011979 314 YPRLLFIITGKGP------DKESYEEKIRRLRLK--RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPM 379 (473)
Q Consensus 314 ~~~~~l~ivG~g~------~~~~l~~~~~~~~l~--~V~~~g~~v~~~------~i~~~l~~adi~v~~~~~s~~e~~p~ 379 (473)
.+..++++.|+.. +.+...+.+.++|++ +|..-+ .+.+ ...+++....+.++ +|..+ ++.
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~--~s~nT~eNa~~~~~~~~~~~iiLV---Tsa~H-m~R 192 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLD--LPKDTEEEAAAVKQAIGDAPFLLV---TSASH-LPR 192 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCC--CCCCHHHHHHHHHHHhCCCCEEEE---CCHHH-HHH
Confidence 5778999999532 235567778888983 465533 2332 33444544456666 45332 788
Q ss_pred HHHHHHhcCCcEEEeccCc
Q 011979 380 KVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 380 kv~Eama~G~PvI~~~~~~ 398 (473)
.+..+-..|+.++...++-
T Consensus 193 A~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 193 AMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred HHHHHHHcCCceeecCCcc
Confidence 8888888999999876543
No 242
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=33.12 E-value=2.9e+02 Score=25.86 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=51.2
Q ss_pred CEEEEEEcCCC-----ChHHHHHHHHHcCCCcEEEecC-CCCcccHHHHHhcCcEEEEeccCC------CCCC-CcHHHH
Q 011979 316 RLLFIITGKGP-----DKESYEEKIRRLRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSS------SGLD-LPMKVV 382 (473)
Q Consensus 316 ~~~l~ivG~g~-----~~~~l~~~~~~~~l~~V~~~g~-~v~~~~i~~~l~~adi~v~~~~~s------~~e~-~p~kv~ 382 (473)
+.++.++.... ..+.+.+..+++|...+.+.-. -.+.+++.+.+.+||+.+++--.. ..+. .--.+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~ 108 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAIL 108 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHH
Confidence 45666665432 2355677788888855444421 023588899999999999931000 0111 333678
Q ss_pred HHHhcCCcEEEeccC
Q 011979 383 DMFGCGLPVCAVSYS 397 (473)
Q Consensus 383 Eama~G~PvI~~~~~ 397 (473)
+....|.|++.+..|
T Consensus 109 ~~~~~G~v~~G~SAG 123 (210)
T cd03129 109 KRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHcCCeEEEcCHH
Confidence 888889999998754
No 243
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.93 E-value=1.3e+02 Score=24.72 Aligned_cols=70 Identities=10% Similarity=0.265 Sum_probs=44.4
Q ss_pred EEEEcCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHH--HHhcCCcEE
Q 011979 319 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD--MFGCGLPVC 392 (473)
Q Consensus 319 l~ivG~g~~~----~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~E--ama~G~PvI 392 (473)
++++|.|-.. +.+++.+++.|++ +.+.- .+..++......+|+.++ .+ ...+-.+-++ +.-.++||.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~--~~~~~~~~~~~~~Diil~---~P-qv~~~~~~i~~~~~~~~~pv~ 75 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGID-AEIEA--VPESELEEYIDDADVVLL---GP-QVRYMLDEVKKKAAEYGIPVA 75 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEE--ecHHHHHHhcCCCCEEEE---Ch-hHHHHHHHHHHHhccCCCcEE
Confidence 5778888543 5677778888874 33331 346778888899999887 22 2112223343 345789998
Q ss_pred Eec
Q 011979 393 AVS 395 (473)
Q Consensus 393 ~~~ 395 (473)
.-+
T Consensus 76 ~I~ 78 (96)
T cd05564 76 VID 78 (96)
T ss_pred EcC
Confidence 875
No 244
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.52 E-value=99 Score=31.02 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=26.7
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEE
Q 011979 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHT 60 (473)
Q Consensus 6 ~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~ 60 (473)
+++|+..|.+|. ..|..|++. ||+|++++... . +.....++.+..
T Consensus 7 ~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~~---~-~~~~~~g~~~~~ 51 (313)
T PRK06249 7 RIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRSD---Y-EAVRENGLQVDS 51 (313)
T ss_pred EEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeCC---H-HHHHhCCeEEEe
Confidence 466665554432 345667776 99999998653 1 223344665543
No 245
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=31.99 E-value=2e+02 Score=27.72 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=36.8
Q ss_pred CcEEEecCCCCcc---cHHHHHhcCcEEEEeccCCCCCCCcH-HHHHHHhcCCcEEEeccCcc
Q 011979 341 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPM-KVVDMFGCGLPVCAVSYSCI 399 (473)
Q Consensus 341 ~~V~~~g~~v~~~---~i~~~l~~adi~v~~~~~s~~e~~p~-kv~Eama~G~PvI~~~~~~~ 399 (473)
++|.+.|--+|.+ .....+..||++|+.= +| ....|. .+.+++..|.|+|..+....
T Consensus 152 P~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvG-TS-l~V~pa~~l~~~~~~~~~~v~iN~~~~ 212 (235)
T cd01408 152 PDIVFFGESLPSRFFSHMEEDKEEADLLIVIG-TS-LKVAPFASLPSRVPSEVPRVLINREPV 212 (235)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEEC-CC-CeeccHHHHHHHHhCCCcEEEEeCCCC
Confidence 5788888756653 3445577899999942 23 222333 35567778999998875443
No 246
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=31.87 E-value=2.8e+02 Score=26.98 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=47.9
Q ss_pred CcEEEecCCCCc---ccHHHHHhcCcEEEEeccCCCCCCCcHH--HHHHHhcCCcEEEeccCccccceecCCceEEe-CC
Q 011979 341 KRVAFRTMWLSA---EDYPLLLGSADLGVCLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SS 414 (473)
Q Consensus 341 ~~V~~~g~~v~~---~~i~~~l~~adi~v~~~~~s~~e~~p~k--v~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~-~~ 414 (473)
++|.+.|-.+|. ++..+....||++|+.= +| ....|.. +..+...|.|++..+.+... . +....++. .+
T Consensus 155 P~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviG-TS-l~V~pa~~l~~~~~~~g~~~i~iN~~~t~--~-d~~~~~~i~~~ 229 (244)
T PRK14138 155 PNIVFFGEALPQDALREAIRLSSKASLMIVMG-SS-LVVYPAAELPLITVRSGGKLVIVNLGETP--L-DDIATLKYNMD 229 (244)
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEeC-cC-CeeecHhHHHHHHHHcCCeEEEEcCCCCC--C-CcceeEEEeCC
Confidence 688888887775 44557778899999942 23 2222332 23567789999988754322 1 12223343 46
Q ss_pred HHHHHHHHHHH
Q 011979 415 SSELADQLLML 425 (473)
Q Consensus 415 ~~~la~~i~~l 425 (473)
.+++...|...
T Consensus 230 ~~~~l~~l~~~ 240 (244)
T PRK14138 230 VVEFANRVMSE 240 (244)
T ss_pred HHHHHHHHHHH
Confidence 76666666543
No 247
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.83 E-value=3.4e+02 Score=26.29 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC-------CCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-------~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
+.+++..+++|+. +..+-. .++..+.+.+||+.+++--.+ ...++--.+-|+...|+|++.+..|.
T Consensus 51 ~~~~~af~~lG~~-v~~l~~---~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 51 AKVAEALAPLGIE-VTGIHR---VADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred HHHHHHHHHCCCE-EEEecc---chhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 4466677777764 333322 366778899999888731100 01234445678999999999997654
No 248
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=31.65 E-value=77 Score=29.88 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=25.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCC
Q 011979 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGS 44 (473)
Q Consensus 7 ~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~ 44 (473)
+++.....+ .++++..++..|.+. ||+|.|+++..+
T Consensus 3 ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~ 38 (196)
T PF01975_consen 3 ILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSE 38 (196)
T ss_dssp EEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSS
T ss_pred EEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCC
Confidence 444444334 689999998899664 899999998754
No 249
>PLN02929 NADH kinase
Probab=31.35 E-value=1.2e+02 Score=30.62 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc---------
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI--------- 399 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~--------- 399 (473)
+.+++..++.|+ .+. . +.+.++......+|+.|.. -|.|.=+...-.+..++||++.+.|..
T Consensus 37 ~~~~~~L~~~gi---~~~-~-v~r~~~~~~~~~~Dlvi~l----GGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~ 107 (301)
T PLN02929 37 NFCKDILQQKSV---DWE-C-VLRNELSQPIRDVDLVVAV----GGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYS 107 (301)
T ss_pred HHHHHHHHHcCC---EEE-E-eeccccccccCCCCEEEEE----CCcHHHHHHHHHcCCCCcEEEEECCCcccccccccc
Confidence 345556666654 332 1 2234445566788999973 333222234444566799999987631
Q ss_pred ccceecCCceEEeC-CHHHHHHHHHHHHhC
Q 011979 400 EELVKVDKNGLLFS-SSSELADQLLMLFKG 428 (473)
Q Consensus 400 ~e~i~~~~~G~~~~-~~~~la~~i~~l~~~ 428 (473)
.++-..+..|++++ +++++.+.|.+++++
T Consensus 108 ~~~~~~r~lGfL~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 108 DEFDARRSTGHLCAATAEDFEQVLDDVLFG 137 (301)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHcC
Confidence 12222346899998 799999999999875
No 250
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=30.56 E-value=4.9e+02 Score=24.95 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=95.5
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
-+++.+.+++.+|+..+.-.-..+++++.+.... .++.+.++.-.
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~----------------------------~g~~v~~idl~------- 66 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGC----------------------------EGRETRIFDPP------- 66 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhh----------------------------cCCEEEEeCcc-------
Confidence 4566777999999999988777777777665431 24566665521
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHH---HHHHh---------cCCcEEEecc-Ccc
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKV---VDMFG---------CGLPVCAVSY-SCI 399 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv---~Eama---------~G~PvI~~~~-~~~ 399 (473)
++.+.+-..-.. -...++.+.+..||.+|+ .+|.+..++|-.+ ++.+. .|+||-.... +|.
T Consensus 67 ----~lPl~~~d~~~~-p~v~~l~~~v~~ADgvii-~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~ 140 (219)
T TIGR02690 67 ----GLPLPDAAHADH-PKVRELRQLSEWSEGQVW-CSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS 140 (219)
T ss_pred ----cCCCCCcCcccC-HHHHHHHHHHHhCCEEEE-eCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH
Confidence 111100000011 124567888899999998 4455666666544 44444 4788876543 222
Q ss_pred c-----c---ceecCCceEEeCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011979 400 E-----E---LVKVDKNGLLFSSSSELADQLLMLFK--GFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 400 ~-----e---~i~~~~~G~~~~~~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
. + .+...-++.+.+....+...-.. ++ ....|++.++.+.+...++ ..|.+.|..++..++.+-++
T Consensus 141 ~g~ra~~~LR~vl~~l~a~v~p~~v~i~~a~~~-fd~~G~l~d~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~ 216 (219)
T TIGR02690 141 QSFNAVNILRRLGRWMRMPTIPNQSSVAKAFDE-FDEAGRMKPSDYYDRVVDVMEEL---TKFTLLTRAYLDYLVDRYSE 216 (219)
T ss_pred hHHHHHHHHHHHHHHCCCccccchhhhhhhHhh-cCcCCCCCCHHHHHHHHHHHHHH---HHHHHHhcchhHHHHHhhhh
Confidence 1 1 01122344444443333333333 32 2233566666666654442 45777888888777766443
No 251
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.42 E-value=1.3e+02 Score=25.41 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=40.6
Q ss_pred EEEEEcCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccH---HHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcE
Q 011979 318 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDY---PLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 318 ~l~ivG~g~~~---~~l~~~~~~~~l~~V~~~g~~v~~~~i---~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~Pv 391 (473)
++.++|.|... ..+......++. ++.+... .+.. ...+..-|++++...+......-..+-.|-..|.||
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~-~~~~~~~---~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~v 77 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGT-PAFFLHP---TEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPI 77 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCC-ceEEccc---chhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 47889988654 334444444443 4444432 2222 234566789888422222222333555566779999
Q ss_pred EEecc
Q 011979 392 CAVSY 396 (473)
Q Consensus 392 I~~~~ 396 (473)
|+-..
T Consensus 78 i~iT~ 82 (128)
T cd05014 78 IAITG 82 (128)
T ss_pred EEEeC
Confidence 99643
No 252
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.31 E-value=1.4e+02 Score=29.26 Aligned_cols=72 Identities=22% Similarity=0.156 Sum_probs=44.6
Q ss_pred EEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHH
Q 011979 343 VAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELAD 420 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~ 420 (473)
|...|+ .+.+.=..+++. +|++|. +-|-+.++.-|+--|..+|+|||.-.-+....-. -.+++.+++.+
T Consensus 175 ia~~GP-fs~e~n~al~~~~~i~~lVt--K~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~------~~~~~~~e~l~ 245 (249)
T PF02571_consen 175 IAMQGP-FSKELNRALFRQYGIDVLVT--KESGGSGFDEKIEAARELGIPVIVIKRPPEPYGD------PVVETIEELLD 245 (249)
T ss_pred EEEeCC-CCHHHHHHHHHHcCCCEEEE--cCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCC------cccCCHHHHHH
Confidence 333454 555555556655 455554 4444447888999999999999998655433211 12467777666
Q ss_pred HHH
Q 011979 421 QLL 423 (473)
Q Consensus 421 ~i~ 423 (473)
.|.
T Consensus 246 ~l~ 248 (249)
T PF02571_consen 246 WLE 248 (249)
T ss_pred HHh
Confidence 553
No 253
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=30.09 E-value=2.3e+02 Score=28.85 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCc-----------ccHHHHHhcCcEEEEeccCCCCCC---CcHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSA-----------EDYPLLLGSADLGVCLHTSSSGLD---LPMK 380 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~-----------~~i~~~l~~adi~v~~~~~s~~e~---~p~k 380 (473)
.+-.+-|+|-|.--..+-+.++.+|. +|....++.+. +++.+++..||++++ |.|-..++ ++-.
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~l-h~PlT~eT~g~i~~~ 218 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTL-HLPLTPETRGLINAE 218 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCCchhhhccccceecccHHHHHhhCCEEEE-cCCCCcchhcccCHH
Confidence 35689999999777778888888876 45555443443 569999999999998 33443333 4556
Q ss_pred HHHHHhcCC
Q 011979 381 VVDMFGCGL 389 (473)
Q Consensus 381 v~Eama~G~ 389 (473)
.+..|--|.
T Consensus 219 ~~a~MK~ga 227 (324)
T COG0111 219 ELAKMKPGA 227 (324)
T ss_pred HHhhCCCCe
Confidence 677666555
No 254
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=29.97 E-value=1.9e+02 Score=25.22 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcC
Q 011979 329 ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSA 362 (473)
Q Consensus 329 ~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~a 362 (473)
+-+++.++++++ ++|++. |+|..|-..+-...
T Consensus 81 ~~lke~l~elgie~eRv~~~--wiSa~E~ekf~e~~ 114 (132)
T COG1908 81 ELLKELLKELGIEPERVRVL--WISAAEGEKFAETI 114 (132)
T ss_pred HHHHHHHHHhCCCcceEEEE--EEehhhHHHHHHHH
Confidence 668889999999 578776 67776665554433
No 255
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=29.61 E-value=4.5e+02 Score=24.89 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcCcEEEEeccCC-------CCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 329 ESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~----v~~~~i~~~l~~adi~v~~~~~s-------~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
+++.+..++++...+.++-.. -+..++.+.+.+||+.++.--.. ...++--.+-++...|.|++.++.|
T Consensus 47 ~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 47 EEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHH
Confidence 556777788888666665431 13456788999999999820000 0112333567778899999998744
No 256
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=29.57 E-value=2.8e+02 Score=29.10 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=44.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC------------------cccHHHHHhc--CcEEEEeccCCCC-
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS------------------AEDYPLLLGS--ADLGVCLHTSSSG- 374 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~------------------~~~i~~~l~~--adi~v~~~~~s~~- 374 (473)
+++++-+..+...+.+.+++++++.+.|.+... -. .+.+.++... +|++|. ...|
T Consensus 27 ~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~-~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~---Ai~G~ 102 (385)
T PRK05447 27 RFRVVALSAGKNVELLAEQAREFRPKYVVVADE-EAAKELKEALAAAGIEVLAGEEGLCELAALPEADVVVA---AIVGA 102 (385)
T ss_pred ccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEE---eCcCc
Confidence 344444444555666777777766544433221 00 3455555553 588887 3333
Q ss_pred CCCcHHHHHHHhcCCcEEEec
Q 011979 375 LDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 375 e~~p~kv~Eama~G~PvI~~~ 395 (473)
.++ ...++|+.+|++|...+
T Consensus 103 aGl-~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 103 AGL-LPTLAAIRAGKRIALAN 122 (385)
T ss_pred ccH-HHHHHHHHCCCcEEEeC
Confidence 234 46899999999999965
No 257
>PLN02928 oxidoreductase family protein
Probab=29.55 E-value=1.8e+02 Score=29.85 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=51.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC-----------------------CCcccHHHHHhcCcEEEE--ec
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----------------------LSAEDYPLLLGSADLGVC--LH 369 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~-----------------------v~~~~i~~~l~~adi~v~--~~ 369 (473)
.+-++.|+|-|.--..+-+.++.+|. +|....+. .+..++.++++.||+.++ |.
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl 236 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence 35689999999766677777777775 55544321 123477899999999998 22
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++....-+.-..+..|--|.-+|-+
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEEC
Confidence 2222333566777777776555544
No 258
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=29.34 E-value=52 Score=27.26 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcC-C-CcEEEecCCCC---------cccHHHHHhcCcEEEEeccCCCCCCC-cHHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLR-L-KRVAFRTMWLS---------AEDYPLLLGSADLGVCLHTSSSGLDL-PMKVV 382 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~-l-~~V~~~g~~v~---------~~~i~~~l~~adi~v~~~~~s~~e~~-p~kv~ 382 (473)
.+-+++++|.|+.- ...++.+- . .+|+++.+.+. ..++...+..+++.+. ....... ....-
T Consensus 6 ~~~~vlVvGgG~va---~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~---at~d~~~n~~i~~ 79 (103)
T PF13241_consen 6 KGKRVLVVGGGPVA---ARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFA---ATDDPELNEAIYA 79 (103)
T ss_dssp TT-EEEEEEESHHH---HHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE----SS-HHHHHHHHH
T ss_pred CCCEEEEECCCHHH---HHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEe---cCCCHHHHHHHHH
Confidence 45788999988632 23333332 2 57888866210 1344566778887776 2222112 22344
Q ss_pred HHHhcCCcEEEeccCccccce
Q 011979 383 DMFGCGLPVCAVSYSCIEELV 403 (473)
Q Consensus 383 Eama~G~PvI~~~~~~~~e~i 403 (473)
++-+.|.||-+++.+...+++
T Consensus 80 ~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 80 DARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp HHHHTTSEEEETT-CCCCSEE
T ss_pred HHhhCCEEEEECCCcCCCeEE
Confidence 555589999999877665543
No 259
>PLN00203 glutamyl-tRNA reductase
Probab=29.20 E-value=4.6e+02 Score=28.65 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=48.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC------------------CCcccHHHHHhcCcEEEEeccCCCCCCC
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------------------LSAEDYPLLLGSADLGVCLHTSSSGLDL 377 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~------------------v~~~~i~~~l~~adi~v~~~~~s~~e~~ 377 (473)
+-++.|+|.|..-..+-+.+...|..+|.+...- .+.++....+..+|+.+.. +++...-+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA-T~s~~pvI 344 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS-TSSETPLF 344 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc-cCCCCCee
Confidence 4688999988654444444444444444443321 2345667788899998872 22222223
Q ss_pred cHHHHHHHhc-----CCcEEEeccCcccc
Q 011979 378 PMKVVDMFGC-----GLPVCAVSYSCIEE 401 (473)
Q Consensus 378 p~kv~Eama~-----G~PvI~~~~~~~~e 401 (473)
.-..++.+.. |.|.+..|.+-.++
T Consensus 345 ~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 345 LKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred CHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 3345555421 57899988766554
No 260
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.01 E-value=4.6e+02 Score=24.08 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=23.9
Q ss_pred CCCCeEEEEEe-cCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 2 GRRGRACVVVL-GDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 2 ~~~~~~~i~~~-~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
.++|++.|... |.-|-+--....|..+++. |+.|.+|-.+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 34554444332 2233344455778888886 9999988633
No 261
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=28.99 E-value=2.7e+02 Score=28.35 Aligned_cols=71 Identities=8% Similarity=-0.096 Sum_probs=48.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC
Q 011979 317 LLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 388 (473)
Q Consensus 317 ~~l~ivG~g~~~~~l~~~~~~~---~l~----~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G 388 (473)
-.++|++.|.......+.++.+ |++ ++.++-+ ++.+.+.+.+++++.+|........-+++-.+.|.++..
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~P-ld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~ 279 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP-LDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKE 279 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCC-CCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 3567777776655555554443 442 4556655 778889999999998887654445567888999998754
No 262
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.25 E-value=1.4e+02 Score=24.56 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=44.0
Q ss_pred EEEEEcCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh--cCCcE
Q 011979 318 LFIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG--CGLPV 391 (473)
Q Consensus 318 ~l~ivG~g~~~----~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama--~G~Pv 391 (473)
-++++|.|-.. ..+++.+++.|++ +.+.- .+..++......+|+.++ .+ ...+-..-++..+ .|+||
T Consensus 6 ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a--~~~~~~~~~~~~~Dvill---~p-qi~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 6 ILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAA--GSYGAAGEKLDDADVVLL---AP-QVAYMLPDLKKETDKKGIPV 78 (95)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEE--ecHHHHHhhcCCCCEEEE---Cc-hHHHHHHHHHHHhhhcCCCE
Confidence 36777877543 5677777787774 33331 346778888899999887 22 2112223344333 47799
Q ss_pred EEec
Q 011979 392 CAVS 395 (473)
Q Consensus 392 I~~~ 395 (473)
...+
T Consensus 79 ~~I~ 82 (95)
T TIGR00853 79 EVIN 82 (95)
T ss_pred EEeC
Confidence 9875
No 263
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=28.21 E-value=1.4e+02 Score=29.41 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=28.7
Q ss_pred ccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc
Q 011979 312 YLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 361 (473)
Q Consensus 312 ~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~ 361 (473)
|..|+..++.+|+|+++ ++.++.++.+-+.+-- +.++...+..
T Consensus 226 fg~p~~~f~~IGDG~eE---e~aAk~l~wPFw~I~~----h~Dl~~l~~a 268 (274)
T TIGR01658 226 FGHPKVRFCAIGDGWEE---CTAAQAMNWPFVKIDL----HPDSSHRFPG 268 (274)
T ss_pred hCCCCceEEEeCCChhH---HHHHHhcCCCeEEeec----CCCHHHhCcc
Confidence 35679999999999864 3567788877555542 4555554433
No 264
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.03 E-value=83 Score=27.77 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred cHHHHHhcCcEEEEeccCCCC-CCCcHHHHHHHhcCCcEEEeccCccccceec--CCceEEeCCHHHHHHHHHHHH
Q 011979 354 DYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSYSCIEELVKV--DKNGLLFSSSSELADQLLMLF 426 (473)
Q Consensus 354 ~i~~~l~~adi~v~~~~~s~~-e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~--~~~G~~~~~~~~la~~i~~l~ 426 (473)
....++..||++|..+...+. =+-.+-..=|.|.|+|.|.-.-.....-+++ ...-.++.+++...+.|.+++
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 346788999999985322211 0012233446799999999865443333322 222334567888888777765
No 265
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=27.93 E-value=4e+02 Score=27.29 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=38.3
Q ss_pred ccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC--CcEE
Q 011979 267 WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL--KRVA 344 (473)
Q Consensus 267 ~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l--~~V~ 344 (473)
.+.+.+++.+++++....++ .+.++++++|+ ++.+++.++++++ +++.
T Consensus 9 mGgD~~p~~vl~aa~~a~~~---------------------------~~~~~~iLvG~---~~~I~~~l~~~~~~~~~~~ 58 (334)
T PRK05331 9 MGGDFGPEVVVPGALQALKE---------------------------HPDLEIILVGD---EEKIKPLLAKKPDLKERIE 58 (334)
T ss_pred CCCccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEeC---HHHHHHHHHhcCCCcCCcE
Confidence 45567899999998887662 45799999995 4467777777765 5677
Q ss_pred EecC
Q 011979 345 FRTM 348 (473)
Q Consensus 345 ~~g~ 348 (473)
+...
T Consensus 59 Iv~~ 62 (334)
T PRK05331 59 IVHA 62 (334)
T ss_pred EEeC
Confidence 7754
No 266
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=27.91 E-value=73 Score=29.06 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHhc-CcEEEEeccC---CCCCCCcHHHHHHHhcCCcEEEe
Q 011979 356 PLLLGS-ADLGVCLHTS---SSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 356 ~~~l~~-adi~v~~~~~---s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
..-+.. +|++|+--.. ..+.+|--.+.+|++.|+||++.
T Consensus 87 ~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 87 RRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 333444 8999982111 13566778999999999999997
No 267
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=27.91 E-value=6.6e+02 Score=25.59 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHhhCCCcEEEEecCCCCC------------CcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHH
Q 011979 18 SPRMQYQALSLARQMSLEVDVVAYGGSKP------------HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (473)
Q Consensus 18 s~r~~~~a~~L~~~~g~eV~vi~~~~~~~------------~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (473)
|--+..+...|.++ ||.|-|++-+.+.+ .+....++|+-+..++. + ..+.-+.+...-..++
T Consensus 65 STli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s--r--G~lGGlS~at~~~i~~- 138 (323)
T COG1703 65 STLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS--R--GTLGGLSRATREAIKL- 138 (323)
T ss_pred HHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC--C--ccchhhhHHHHHHHHH-
Confidence 44455566777776 99999999543332 11223377888888872 1 1112122222212222
Q ss_pred HHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCch
Q 011979 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 138 (473)
+....||+|++-. +-....---+...-++-+++...+.+
T Consensus 139 -----------ldAaG~DvIIVET---VGvGQsev~I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 139 -----------LDAAGYDVIIVET---VGVGQSEVDIANMADTFLVVMIPGAG 177 (323)
T ss_pred -----------HHhcCCCEEEEEe---cCCCcchhHHhhhcceEEEEecCCCC
Confidence 1348899999976 22111111122333455555666554
No 268
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=27.74 E-value=77 Score=29.46 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=48.7
Q ss_pred CeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHH-HHHHHH
Q 011979 258 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES-YEEKIR 336 (473)
Q Consensus 258 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~-l~~~~~ 336 (473)
+.+.+++.+.++-.-...|++.+.. ..|+.++++....+.-.+ .++...
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~------------------------------~~p~~~illT~~T~tg~~~~~~~~~ 71 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRK------------------------------QRPDLRILLTTTTPTGREMARKLLP 71 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---------------------------------TS-EEEEES-CCHHHHHHGG-G
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHH------------------------------hCCCCeEEEEecCCchHHHHHHhCC
Confidence 6688888888765555555555544 268899999987654332 222211
Q ss_pred HcCCCcEEEecCCCCcccHHHHHhcC--cEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 337 RLRLKRVAFRTMWLSAEDYPLLLGSA--DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 337 ~~~l~~V~~~g~~v~~~~i~~~l~~a--di~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
. . -.+.+.+. =....+..+++.- |++|+ ..+|-.|+-+.++-..|+|++..+
T Consensus 72 ~-~-v~~~~~P~-D~~~~~~rfl~~~~P~~~i~----~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 72 D-R-VDVQYLPL-DFPWAVRRFLDHWRPDLLIW----VETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp G-G--SEEE----SSHHHHHHHHHHH--SEEEE----ES----HHHHHH-----S-EEEEE
T ss_pred C-C-eEEEEeCc-cCHHHHHHHHHHhCCCEEEE----EccccCHHHHHHHhhcCCCEEEEe
Confidence 1 1 12333321 0123455566653 88887 466778999999999999999876
No 269
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.44 E-value=1.2e+02 Score=26.45 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCc--EEEecc
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP--VCAVSY 396 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~P--vI~~~~ 396 (473)
+..+++++.++-..+.+.. .+++...+..+|+.+.. ++.+. +..--|.+..+.+ -+..|.
T Consensus 47 ~ra~~l~~~~~~~~~~~~~----~~~~~~~~~~~DivI~a--T~~~~--~~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 47 ERAEALAEEFGGVNIEAIP----LEDLEEALQEADIVINA--TPSGM--PIITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HHHHHHHHHHTGCSEEEEE----GGGHCHHHHTESEEEE---SSTTS--TSSTHHHHTTTCHHCSEEEES
T ss_pred HHHHHHHHHcCccccceee----HHHHHHHHhhCCeEEEe--cCCCC--cccCHHHHHHHHhhhhceecc
Confidence 3444555554323344443 47788889999999982 23332 2233445555543 244454
No 270
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=27.27 E-value=1.5e+02 Score=28.98 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.4
Q ss_pred cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
.+++..++..+|+.+-. +......-.+..|+..|+||+.-..
T Consensus 51 ~~dl~~ll~~~DvVid~---t~p~~~~~~~~~al~~G~~vvigtt 92 (257)
T PRK00048 51 TDDLEAVLADADVLIDF---TTPEATLENLEFALEHGKPLVIGTT 92 (257)
T ss_pred cCCHHHhccCCCEEEEC---CCHHHHHHHHHHHHHcCCCEEEECC
Confidence 46777778889999862 2222223467889999999998653
No 271
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=27.17 E-value=2.1e+02 Score=29.55 Aligned_cols=105 Identities=6% Similarity=-0.059 Sum_probs=64.5
Q ss_pred EEEEEcCCCChHHHHHHHH---HcCCC----cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC--
Q 011979 318 LFIITGKGPDKESYEEKIR---RLRLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-- 388 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~---~~~l~----~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G-- 388 (473)
.+.|++.|.......+.++ +.|++ ++.++-+ ++.+.+.+..+..+.+|........-|+|-.+.|+++-.
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikP-lD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f 308 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRP-LDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESF 308 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCc-cCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhch
Confidence 4566666665544444444 33552 3444555 677888899999988887655555567999999988654
Q ss_pred ----CcEEEeccCcc----ccceecCCceEEeCCHHHHHHHHHHHHh
Q 011979 389 ----LPVCAVSYSCI----EELVKVDKNGLLFSSSSELADQLLMLFK 427 (473)
Q Consensus 389 ----~PvI~~~~~~~----~e~i~~~~~G~~~~~~~~la~~i~~l~~ 427 (473)
.|+.--...+. ....+ -+..++++.+.+++.+++.
T Consensus 309 ~~~~~~v~rlg~~d~~~p~~~~le----~~~~p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 309 DYLDAPVERIAGADVPMPYAANLE----RLALPQVEDIVRAAKRACY 351 (356)
T ss_pred hccCCCeEEeccCCcCCCccHHHH----HhhCCCHHHHHHHHHHHHH
Confidence 35544322111 11111 1344578888888888876
No 272
>PRK06932 glycerate dehydrogenase; Provisional
Probab=27.04 E-value=2.1e+02 Score=29.00 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=55.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC------CCcccHHHHHhcCcEEEE--eccCCCCCCCcHHHHHHHh
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMFG 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~------v~~~~i~~~l~~adi~v~--~~~~s~~e~~p~kv~Eama 386 (473)
.+-++-|+|-|.--..+-+.++.+|. +|...... ....++.+++..||++++ |.++....-+.-..++.|-
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk 224 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMK 224 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCC
Confidence 35689999999766677777777775 45444321 113468999999999998 3333333347778899998
Q ss_pred cCCcEEEec
Q 011979 387 CGLPVCAVS 395 (473)
Q Consensus 387 ~G~PvI~~~ 395 (473)
-|.-+|-+.
T Consensus 225 ~ga~lIN~a 233 (314)
T PRK06932 225 PTAFLINTG 233 (314)
T ss_pred CCeEEEECC
Confidence 777666664
No 273
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=26.82 E-value=1.9e+02 Score=32.06 Aligned_cols=124 Identities=18% Similarity=0.136 Sum_probs=77.9
Q ss_pred HhhhccCcc-ccCCCEEEEEEcCCCChHHHHH---HHHHcCCC----cEEEecCCCCcccHHHHHhcCcEEEEeccCCCC
Q 011979 303 LKEISDGKQ-YLYPRLLFIITGKGPDKESYEE---KIRRLRLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (473)
Q Consensus 303 ~~~~~~~~~-~~~~~~~l~ivG~g~~~~~l~~---~~~~~~l~----~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~ 374 (473)
|+.+.-|+. ...+.-++.|++-|.....-.+ ...+.|+. +-+|..+ ++.+-+.++....+++|..-.....
T Consensus 487 ~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkP-lD~~ll~~La~~h~~~vtlEe~~~~ 565 (627)
T COG1154 487 LEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKP-LDEALLLELAKSHDLVVTLEENVVD 565 (627)
T ss_pred cccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCC-CCHHHHHHHHhhcCeEEEEecCccc
Confidence 444444432 2223445677777754433333 34444542 5677777 8888899999999999986444445
Q ss_pred CCCcHHHHHHHhcCCc-EEEeccCccccceecCCceEEeC----CHHHHHHHHHHHHh
Q 011979 375 LDLPMKVVDMFGCGLP-VCAVSYSCIEELVKVDKNGLLFS----SSSELADQLLMLFK 427 (473)
Q Consensus 375 e~~p~kv~Eama~G~P-vI~~~~~~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~ 427 (473)
-+||..++|+++.--. +-+-+.+-..+++.|+...-+.. |.+.+++.|..++.
T Consensus 566 GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 566 GGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred ccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6799999999876532 22223455666777766554442 57778888777765
No 274
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.65 E-value=7.8e+02 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.8
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGS 44 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~ 44 (473)
|.++++++|+..| +|-.-.+..|.+. ++-..+++..+.
T Consensus 1 ~~~~~kvLviG~g-----~rehal~~~~~~~-~~~~~~~~~pgn 38 (426)
T PRK13789 1 MQVKLKVLLIGSG-----GRESAIAFALRKS-NLLSELKVFPGN 38 (426)
T ss_pred CCCCcEEEEECCC-----HHHHHHHHHHHhC-CCCCEEEEECCc
Confidence 7777777765444 6888888888886 766666665543
No 275
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=26.63 E-value=40 Score=32.55 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=42.0
Q ss_pred CCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch
Q 011979 373 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW 452 (473)
Q Consensus 373 ~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 452 (473)
.|| ..+|.+|+..+|+|++.... ++..+---..+-..+++... -..-+-+.+|+-.. ..-|
T Consensus 179 lGE-v~vK~~E~~q~GLPMc~lg~--------------ifG~~RL~~kqr~~l~~~yl---PWavr~G~~ak~lm-~vYw 239 (267)
T KOG3244|consen 179 LGE-VTVKWLEGVQMGLPMCILGA--------------IFGPVRLNEKQRSRLLKHYL---PWAVRNGLNAKPLM-NVYW 239 (267)
T ss_pred hhH-HHHHHHHHHhcCCchHHhhh--------------ccchhhcCHHHHHHHHHhhc---cHHHhcCcCCCcch-hhHH
Confidence 444 67899999999999988641 11111111223333333311 11222344444433 5668
Q ss_pred HHHHHHHHHHHHHHH
Q 011979 453 ATEWEEHAKPLITEV 467 (473)
Q Consensus 453 ~~~~~~~~~~~~~~~ 467 (473)
++.|++-+..+=+|+
T Consensus 240 E~~~e~dl~~vR~el 254 (267)
T KOG3244|consen 240 ERHFEKDLEEVRKEL 254 (267)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888777766554
No 276
>PRK06487 glycerate dehydrogenase; Provisional
Probab=26.52 E-value=2.2e+02 Score=28.84 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=54.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC-----CCcccHHHHHhcCcEEEE--eccCCCCCCCcHHHHHHHhc
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMFGC 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~-----v~~~~i~~~l~~adi~v~--~~~~s~~e~~p~kv~Eama~ 387 (473)
.+-.+-|+|-|.--..+-+.++.+|. +|...... ....++.++++.||++++ |.++....-+.-..+..|--
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ 225 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC
Confidence 35689999999766677777777775 45444321 123468999999999998 33333334467788888877
Q ss_pred CCcEEEec
Q 011979 388 GLPVCAVS 395 (473)
Q Consensus 388 G~PvI~~~ 395 (473)
|--+|-+.
T Consensus 226 ga~lIN~a 233 (317)
T PRK06487 226 GALLINTA 233 (317)
T ss_pred CeEEEECC
Confidence 76565554
No 277
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.52 E-value=3.4e+02 Score=24.57 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=40.4
Q ss_pred EEEEEcCCCChH---HHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 318 LFIITGKGPDKE---SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 318 ~l~ivG~g~~~~---~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++.++|.|.... .+......+| .++.+.+. .....+..-|+++....+......-..+-.|-..|.|+|+-
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~-----~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~I 108 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLG-LNVYVVGE-----TTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLI 108 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCC-CeEEEeCC-----CCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEE
Confidence 688999886542 2333333334 35666543 12345677899988422222222223444556789999986
Q ss_pred cc
Q 011979 395 SY 396 (473)
Q Consensus 395 ~~ 396 (473)
..
T Consensus 109 T~ 110 (179)
T cd05005 109 TS 110 (179)
T ss_pred EC
Confidence 43
No 278
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=26.21 E-value=6e+02 Score=24.53 Aligned_cols=98 Identities=8% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcc-------------cHHHHHhcCcEEEEeccCCCC-CC-CcHHHHHHHhcCCcEEE
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAE-------------DYPLLLGSADLGVCLHTSSSG-LD-LPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~-------------~i~~~l~~adi~v~~~~~s~~-e~-~p~kv~Eama~G~PvI~ 393 (473)
+.+-+.+++++.+.|..+|+ ++.. +..+.+..+ +-.+ ...+ .| .|.-+.++...|.|.++
T Consensus 97 ~~il~~~~~~gv~~Ii~Lgg-~~~~~~~~~v~~~at~~~~~~~l~~~-~~~~---~~g~i~G~~g~ll~~a~~~gi~~i~ 171 (238)
T TIGR00161 97 NAIVEWMVRNNSRELISFNG-MVVREKSQPVFGAANSQELIERLKDL-IEIF---PFGNLNGISGTLLTRCAVNDIPAIC 171 (238)
T ss_pred HHHHHHHHHcCCCeEEEEeC-ccCCCCCCcEEEEECCHHHHHHHHHh-cCcC---CCCEEechhHHHHHHHHHcCCCEEE
Confidence 56777889999988888888 4442 244444443 2111 1111 11 34566688889999888
Q ss_pred eccCccccceecCCceEEeCC---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 394 VSYSCIEELVKVDKNGLLFSS---SSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 394 ~~~~~~~e~i~~~~~G~~~~~---~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
--... .|.. +| ...+.+.|.++++- +-....+.+.|.+
T Consensus 172 Ll~et---------~~~~-PDP~AA~~ll~~l~~l~~~----~id~~~L~e~Ae~ 212 (238)
T TIGR00161 172 LLAET---------LGPY-PDPRAAASLVEVLNKMLNT----NVDPEPLLKEAEA 212 (238)
T ss_pred EEEeC---------CCCC-CCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHH
Confidence 53211 2222 34 55677778888754 2234444444443
No 279
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.14 E-value=2.6e+02 Score=27.43 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=47.9
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCC---cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEE
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLS---AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~---~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI 392 (473)
-.++++|.-+. ..-+++.++..|. ..+.|.|++ ...+...+..=|++|+. ....+ ...+.||-.+|.|||
T Consensus 72 ~~Il~Vstr~~~~~~V~k~A~~tg~--~~i~~Rw~pGtlTN~~~~~f~~P~llIV~--Dp~~d--~qAI~EA~~lnIPvI 145 (249)
T PTZ00254 72 ADVVVVSSRPYGQRAVLKFAQYTGA--SAIAGRFTPGTFTNQIQKKFMEPRLLIVT--DPRTD--HQAIREASYVNIPVI 145 (249)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHhCC--eEECCcccCCCCCCccccccCCCCEEEEe--CCCcc--hHHHHHHHHhCCCEE
Confidence 34667776553 3445666666663 223333333 33344445666777772 12222 459999999999999
Q ss_pred Ee-ccCccccce
Q 011979 393 AV-SYSCIEELV 403 (473)
Q Consensus 393 ~~-~~~~~~e~i 403 (473)
+- ++.+....|
T Consensus 146 al~DTds~p~~V 157 (249)
T PTZ00254 146 ALCDTDSPLEYV 157 (249)
T ss_pred EEecCCCCcccC
Confidence 96 565555555
No 280
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.06 E-value=5.7e+02 Score=24.63 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCC-----------CcHHHHHHHhcCCcEEEec
Q 011979 329 ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD-----------LPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 329 ~~l~~~~~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~-----------~p~kv~Eama~G~PvI~~~ 395 (473)
+..++..+++|+ .++.... -|.+++...+..+|+..+ .-|.+ +=-.+-|....|+|.|..+
T Consensus 52 ~k~~~~l~~lg~~v~~L~l~~--~~~~~Ie~~l~~~d~IyV----gGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~S 125 (224)
T COG3340 52 EKVRNALAKLGLEVSELHLSK--PPLAAIENKLMKADIIYV----GGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWS 125 (224)
T ss_pred HHHHHHHHHcCCeeeeeeccC--CCHHHHHHhhhhccEEEE----CCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEec
Confidence 556667778888 4666653 478999999999999998 33322 3347889999999999987
Q ss_pred cCc
Q 011979 396 YSC 398 (473)
Q Consensus 396 ~~~ 398 (473)
.|.
T Consensus 126 AGA 128 (224)
T COG3340 126 AGA 128 (224)
T ss_pred cCc
Confidence 554
No 281
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=25.93 E-value=2.8e+02 Score=28.01 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=53.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC-------CCcccHHHHHhcCcEEEE--eccCCCCCCCcHHHHHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-------LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMF 385 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~-------v~~~~i~~~l~~adi~v~--~~~~s~~e~~p~kv~Eam 385 (473)
.+-.+-|+|-|.--..+-+.++.+|. +|....+. ....++.++++.||+.++ |.++....-++-..++.|
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 35689999999766677777777775 45544321 123478999999999988 333333334677888888
Q ss_pred hcCCcEEEec
Q 011979 386 GCGLPVCAVS 395 (473)
Q Consensus 386 a~G~PvI~~~ 395 (473)
--|.-+|-+.
T Consensus 223 k~~a~lIN~a 232 (311)
T PRK08410 223 KDGAILINVG 232 (311)
T ss_pred CCCeEEEECC
Confidence 7776555553
No 282
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.35 E-value=3.5e+02 Score=26.57 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=41.1
Q ss_pred EEEEEcCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 318 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 318 ~l~ivG~g~~~---~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++.|+|.|... ..+......+| .++.+....-........+..-|++++...+......-..+-.|-..|.|+|+-
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g-~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~I 215 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIG-YRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCC-CeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 57899988654 33444444444 345554220111222344567799988422222221222444455779999996
Q ss_pred ccC
Q 011979 395 SYS 397 (473)
Q Consensus 395 ~~~ 397 (473)
...
T Consensus 216 T~~ 218 (285)
T PRK15482 216 TSL 218 (285)
T ss_pred eCC
Confidence 543
No 283
>PRK06849 hypothetical protein; Provisional
Probab=25.26 E-value=7.6e+02 Score=25.36 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=25.1
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.+.++++|...+ .+-....+++|.+. |++|+++...
T Consensus 1 ~~~~~~VLI~G~~----~~~~l~iar~l~~~-G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGAR----APAALELARLFHNA-GHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCC----cHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 6777777665332 23445567888886 9999998754
No 284
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=25.01 E-value=5.4e+02 Score=23.59 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=63.3
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCC--CCcHHHHHHHh---c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGL--DLPMKVVDMFG---C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e--~~p~kv~Eama---~ 387 (473)
+++++|+.+.+. ...++...+..+ .+...+..-+.++....+.. .|++++-... .+. .-|..+++.+. .
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~--~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~~~ 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIE--WVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRHFP 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHHCC
Confidence 467888887653 344555555443 22222211224555555543 6888872111 111 13455565553 3
Q ss_pred CCcEEEec-cCc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVS-YSC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~-~~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
++|||... ... ....+..|..|++.. +.+++.++|..+...
T Consensus 80 ~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 56777753 222 234567788899986 589999999988775
No 285
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.98 E-value=3.5e+02 Score=21.41 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=57.7
Q ss_pred EEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcC--cEEEEeccCCCCCCCcHHHHHHHh---cCCcEEE
Q 011979 320 IITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSA--DLGVCLHTSSSGLDLPMKVVDMFG---CGLPVCA 393 (473)
Q Consensus 320 ~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~a--di~v~~~~~s~~e~~p~kv~Eama---~G~PvI~ 393 (473)
+|+.+.+. .+.+++.++..++..+.... +.++....+... |+.++-...+. .-+..+++.+. .+.|+|.
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~d~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~ 76 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTAS---SGEEALELLKKHPPDLIIIDLELPD--GDGLELLEQIRQINPSIPIIV 76 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEES---SHHHHHHHHHHSTESEEEEESSSSS--SBHHHHHHHHHHHTTTSEEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHhcccCceEEEEEeeecc--ccccccccccccccccccEEE
Confidence 44554332 35566666666654455543 477777777764 66666322222 23444444443 4788886
Q ss_pred ec-c---CccccceecCCceEEeC--CHHHHHHHHH
Q 011979 394 VS-Y---SCIEELVKVDKNGLLFS--SSSELADQLL 423 (473)
Q Consensus 394 ~~-~---~~~~e~i~~~~~G~~~~--~~~~la~~i~ 423 (473)
.. . ....+...-+..|++.. +.+++.++|.
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 53 2 23456667788899986 6888887763
No 286
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=24.70 E-value=5.9e+02 Score=23.91 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=23.1
Q ss_pred HHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc
Q 011979 357 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 398 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~ 398 (473)
..+..+++++.. ++..+----..-+|-+.|+||-+.+...
T Consensus 65 ~dl~~~~lVi~a--t~d~~ln~~i~~~a~~~~ilvn~~d~~e 104 (205)
T TIGR01470 65 DILEGAFLVIAA--TDDEELNRRVAHAARARGVPVNVVDDPE 104 (205)
T ss_pred HHhCCcEEEEEC--CCCHHHHHHHHHHHHHcCCEEEECCCcc
Confidence 346677776662 2222112235566678899998776443
No 287
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.67 E-value=4.2e+02 Score=25.80 Aligned_cols=90 Identities=13% Similarity=0.005 Sum_probs=50.6
Q ss_pred cccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC-CHHHHHHHHHHHHhCC
Q 011979 352 AEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGF 429 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~-~~~~la~~i~~l~~~~ 429 (473)
...-..-++.||++|. .. ..|++=-++++.. .+.+++....++..+.-..+-.-|+-+ +...+++.|.+.+..
T Consensus 43 ~p~d~~~l~~ADliv~---~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~~~~~dPH~Wldp~n~~~~a~~I~~~L~~- 117 (264)
T cd01020 43 TPTDAAKVSTADIVVY---NGGGYDPWMTKLLADT-KDVIVIAADLDGHDDKEGDNPHLWYDPETMSKVANALADALVK- 117 (264)
T ss_pred CHHHHHHHhhCCEEEE---eCCCchHHHHHHHHhc-CCceEEeeecccccCCCCCCCceecCHhHHHHHHHHHHHHHHH-
Confidence 3344566788999998 34 2344545666655 456666654433211000112223333 466777777665543
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 011979 430 PDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~ 447 (473)
.||+..+.+.+|+.++.
T Consensus 118 -~dP~~~~~y~~N~~~~~ 134 (264)
T cd01020 118 -ADPDNKKYYQANAKKFV 134 (264)
T ss_pred -hCcccHHHHHHHHHHHH
Confidence 25777778888888765
No 288
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=24.57 E-value=6.4e+02 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=27.2
Q ss_pred ccHHHHHhcCcEEEEeccCCCCCCCcHH----HHHHHhcCCcEEEec
Q 011979 353 EDYPLLLGSADLGVCLHTSSSGLDLPMK----VVDMFGCGLPVCAVS 395 (473)
Q Consensus 353 ~~i~~~l~~adi~v~~~~~s~~e~~p~k----v~Eama~G~PvI~~~ 395 (473)
.++...+++||++|.--.+...+..|.+ ++-|..+|+|++...
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~g 155 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIG 155 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEEC
Confidence 3666789999999982111122222322 445678999999975
No 289
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.37 E-value=4.2e+02 Score=25.56 Aligned_cols=109 Identities=19% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcC
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR 339 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~ 339 (473)
++++.|.+..-+.-..+|+--..+...|+++ .++-++-++. |..+......++.+
T Consensus 92 lllCTG~F~~l~~~~~lleP~ril~~lV~al-----------------------~~~~~vGViv--P~~eQ~~~~~~kW~ 146 (221)
T PF07302_consen 92 LLLCTGEFPGLTARNPLLEPDRILPPLVAAL-----------------------VGGHQVGVIV--PLPEQIAQQAEKWQ 146 (221)
T ss_pred EEeccCCCCCCCCCcceeehHHhHHHHHHHh-----------------------cCCCeEEEEe--cCHHHHHHHHHHHH
Confidence 5566677765443333666555555555554 3445777777 44444444444332
Q ss_pred C--CcEEE--ecCCC-Cccc---HHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 340 L--KRVAF--RTMWL-SAED---YPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 340 l--~~V~~--~g~~v-~~~~---i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
- ..+.+ ..+|. +.++ ...-++ .||+.|+ ..-|.+.-++-.=+-++|+|||-++.
T Consensus 147 ~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvL---DCmGYt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 147 PLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVL---DCMGYTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE---ECCCCCHHHHHHHHHHhCCCEEeHHH
Confidence 2 23333 33321 2222 445566 7999999 67776677777778889999999863
No 290
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.12 E-value=81 Score=31.48 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEecCCCCChh---HHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGRSPR---MQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r---~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.||+++-| . + -||.+. ..++|..|+++ |++|.+|-.+
T Consensus 1 ~~~~~~iai-~-~-KGGvGKTt~~~nLa~~la~~-g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAF-Y-G-KGGIGKSTTSQNTLAALVEM-GQKILIVGCD 41 (295)
T ss_pred CCcceEEEE-E-C-CCCccHHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 788876555 3 4 344444 44678899997 9999999543
No 291
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.01 E-value=4.8e+02 Score=25.97 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=46.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC--------------CCcccHHHHHhcCcEEEEeccCCCCCCCcHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW--------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 380 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~--------------v~~~~i~~~l~~adi~v~~~~~s~~e~~p~k 380 (473)
.+-++.|+|.|.--..+-+.++.+|. +|.+...- ++.+++.+.+..+|+.++- .|.. -++-.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint-~P~~--ii~~~ 225 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINT-IPAL--VLTAD 225 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEEC-CChH--HhCHH
Confidence 45689999999766667777777774 66665431 1223567788999999982 2221 13345
Q ss_pred HHHHHhcCCcEE
Q 011979 381 VVDMFGCGLPVC 392 (473)
Q Consensus 381 v~Eama~G~PvI 392 (473)
.++.|..|.-+|
T Consensus 226 ~l~~~k~~aliI 237 (287)
T TIGR02853 226 VLSKLPKHAVII 237 (287)
T ss_pred HHhcCCCCeEEE
Confidence 666666554444
No 292
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.53 E-value=1.9e+02 Score=28.82 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCC
Q 011979 3 RRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSK 45 (473)
Q Consensus 3 ~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~ 45 (473)
.+++++|+.+|.+|+| .++.|.+. |+.|.++....+.
T Consensus 2 ~~~~v~IvG~GliG~s-----~a~~l~~~-g~~v~i~g~d~~~ 38 (279)
T COG0287 2 ASMKVGIVGLGLMGGS-----LARALKEA-GLVVRIIGRDRSA 38 (279)
T ss_pred CCcEEEEECCchHHHH-----HHHHHHHc-CCeEEEEeecCcH
Confidence 3567888887776552 35677776 9999999876543
No 293
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=23.49 E-value=3.3e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=27.9
Q ss_pred CeEEEEEecCCCCChhHHH-HHHHHHhh-CCCcEEEE-ecCCCCCCcccccCCCEEEEEee
Q 011979 5 GRACVVVLGDLGRSPRMQY-QALSLARQ-MSLEVDVV-AYGGSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~-~a~~L~~~-~g~eV~vi-~~~~~~~~~~~~~~~~i~i~~~~ 62 (473)
+|+.|+..|+ +.... ....+.+. .+++|.++ +..............||.++.++
T Consensus 2 ~ki~vl~sg~----gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGN----GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCC----ChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 5577777765 23333 33344443 23566554 43322222344557789888876
No 294
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.23 E-value=1.9e+02 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=36.1
Q ss_pred EEEEEcCC----CChHHHHHHHHHcCCCc-----------------EEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 318 LFIITGKG----PDKESYEEKIRRLRLKR-----------------VAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 318 ~l~ivG~g----~~~~~l~~~~~~~~l~~-----------------V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
-++++|.| ...+++++++++++++- +-+.|. .......+++.+||+.++.
T Consensus 14 P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~-~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 14 PVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGL-FGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCG-GSCHHHHHHHHHSSEEEEE
T ss_pred EEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCc-cCCHHHHHHhcCCCEEEEE
Confidence 58889977 34688999999987532 233333 4567888999999999994
No 295
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=23.19 E-value=6.4e+02 Score=24.69 Aligned_cols=73 Identities=15% Similarity=-0.053 Sum_probs=42.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCC--C--cH----HHHHHH
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD--L--PM----KVVDMF 385 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~--~--p~----kv~Eam 385 (473)
.++.++++....|. +..+.+++ .-... .+..++...+..+|++|.--....... + +. .+.-|.
T Consensus 26 ~~~~~~~v~s~~p~-----~~~~~~~v---~~~~r-~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~ 96 (298)
T TIGR03609 26 PPGVEPTVLSNDPA-----ETAKLYGV---EAVNR-RSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLAR 96 (298)
T ss_pred CCCCeEEEecCChH-----HHHhhcCc---eEEcc-CCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHH
Confidence 36788888876552 23344453 33444 456678889999999998211111111 1 11 234456
Q ss_pred hcCCcEEEec
Q 011979 386 GCGLPVCAVS 395 (473)
Q Consensus 386 a~G~PvI~~~ 395 (473)
.+|+|++...
T Consensus 97 ~~~k~~~~~g 106 (298)
T TIGR03609 97 LFGKPVILWG 106 (298)
T ss_pred HcCCCEEEEe
Confidence 7899998875
No 296
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.95 E-value=75 Score=26.65 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=27.7
Q ss_pred HHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 356 PLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 356 ~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
...+++||++|....+. ...|...-+.=|.+.|+||++....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 46788999999965442 1222333445578999999998543
No 297
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.87 E-value=3.3e+02 Score=25.60 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 314 YPRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~--~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
..++-+.|-+.|... ...-+.+++.|.+-|.++|. +...+.++...+|+.+..
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~--~~s~l~~l~~~~D~~i~i 163 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGY--DGGELAGLLGPQDVEIRI 163 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC--CCChhhhccccCCEEEEc
Confidence 457888888888755 33456677878777777765 677788888889999985
No 298
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=22.72 E-value=8.4e+02 Score=24.97 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=27.9
Q ss_pred CEEEEEEcC-CCC--hHHHHH----HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEE
Q 011979 316 RLLFIITGK-GPD--KESYEE----KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 367 (473)
Q Consensus 316 ~~~l~ivG~-g~~--~~~l~~----~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~ 367 (473)
++.+.+++. ... .+++.+ .++..| .++.+ .+++.+.+..||++..
T Consensus 199 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g-~~~~~------~~d~~ea~~~aDvvy~ 250 (335)
T PRK04523 199 GMDVTLLCPTPDYILDERYMDWAEQNAAESG-GSLTV------SHDIDSAYAGADVVYA 250 (335)
T ss_pred CCEEEEECCchhhCCCHHHHHHHHHHHHHcC-CeEEE------EcCHHHHhCCCCEEEe
Confidence 478999995 211 122322 334444 24443 3788899999999998
No 299
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=22.62 E-value=1.1e+02 Score=26.45 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=24.7
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|++.+.+.|..+.. .....+..|.++ |++|+++...
T Consensus 1 k~i~l~vtGs~~~~-~~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAY-KAPDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGG-GHHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHhhC-CCEEEEEECC
Confidence 56777777765443 366677788887 9999998743
No 300
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.56 E-value=7e+02 Score=24.63 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=77.5
Q ss_pred cCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC--Cc-EE
Q 011979 268 TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL--KR-VA 344 (473)
Q Consensus 268 ~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l--~~-V~ 344 (473)
..-+++..+++++....+ ++++--|+.|-+.|-+-.. ...+-.-++- ..+..+.+.++++ ++ |-
T Consensus 112 ~~V~d~~ea~~~~~~~~~---rVflt~G~~~l~~f~~~~~------~~~~~~Rvlp----~~~~~~~~~~~~~p~~~Iia 178 (257)
T COG2099 112 IEVADIEEAAEAAKQLGR---RVFLTTGRQNLAHFVAADA------HSHVLARVLP----PPDVLAKCEDLGVPPARIIA 178 (257)
T ss_pred EEecCHHHHHHHHhccCC---cEEEecCccchHHHhcCcc------cceEEEEEcC----chHHHHHHHhcCCChhhEEE
Confidence 334567777777776643 2444555555555544332 1122222222 1234556777777 33 55
Q ss_pred EecCCCCcccHHHHHhcCcEEEEeccCCCCC-CCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeCCHHHHHHHHH
Q 011979 345 FRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLL 423 (473)
Q Consensus 345 ~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e-~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~ 423 (473)
..|+ .+.+.=..++...++-++-.+.|-+. ++.-|+-=|...|+|||...-+ + +... .+.+++++.+.+.
T Consensus 179 ~~GP-fs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp-----~-~~~~--~~~~v~~~~~~l~ 249 (257)
T COG2099 179 MRGP-FSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP-----I-DYPA--GFGDVTDLDAALA 249 (257)
T ss_pred ecCC-cChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC-----C-cCCc--ccchhhHHHHHHH
Confidence 5577 77777777777654444433344334 6788999999999999997644 1 1111 2235566666665
Q ss_pred HHH
Q 011979 424 MLF 426 (473)
Q Consensus 424 ~l~ 426 (473)
++.
T Consensus 250 ~~~ 252 (257)
T COG2099 250 QLR 252 (257)
T ss_pred HHH
Confidence 553
No 301
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=22.48 E-value=3.7e+02 Score=27.84 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=57.8
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~ 336 (473)
.+.+.+..++.++..-...|++.+.. ..|+.++++.-..+....+.+.
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~------------------------------~~~~~~i~~t~~t~~~~~~~~~-- 97 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRK------------------------------RYPDLPILVTTMTPTGSERAQA-- 97 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHH------------------------------hCCCCcEEEeCCCccHHHHHHH--
Confidence 44478889999866666666555543 2577777666433322222211
Q ss_pred HcCC-CcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 337 RLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 337 ~~~l-~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
..+- -.+.+.+. -....+..+++. -|++++ . ..+.+|..+..+-..|+|++.++
T Consensus 98 ~~~~~~~~~~~P~-d~~~~~~~~l~~~~Pd~v~~---~-~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 98 LFGDDVEHRYLPY-DLPGAVRRFLRFWRPKLVII---M-ETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred hcCCCceEEEecC-CcHHHHHHHHHhhCCCEEEE---E-ecchhHHHHHHHHHCCCCEEEEe
Confidence 1221 12334432 223355566654 488876 2 23446777888888999998864
No 302
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=22.45 E-value=2.8e+02 Score=28.29 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCCEEE--EEEcCCCC-----hHHHHHHHHHcCCCcEEEecCCCCcccHHHHH----hcCcEEEEeccCCCCCCCcHHHH
Q 011979 314 YPRLLF--IITGKGPD-----KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL----GSADLGVCLHTSSSGLDLPMKVV 382 (473)
Q Consensus 314 ~~~~~l--~ivG~g~~-----~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l----~~adi~v~~~~~s~~e~~p~kv~ 382 (473)
.|+++= ++...|+. .+++++.++..|++-+...- -+..|++... ...|+...|......-++...+-
T Consensus 156 ~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v--~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~ 233 (322)
T COG2984 156 LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV--TSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ 233 (322)
T ss_pred CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec--CcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Confidence 577753 46666652 27778888888886555542 1345555444 56799999733323334667889
Q ss_pred HHHhcCCcEEEeccCccccceecCCceEEeCCHH----HHHHHHHHHHhC
Q 011979 383 DMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSS----ELADQLLMLFKG 428 (473)
Q Consensus 383 Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~~~~----~la~~i~~l~~~ 428 (473)
+|...+.|+++++.+- ++.|...-+.-|.. +-++...++++.
T Consensus 234 ~a~~~kiPli~sd~~~----V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG 279 (322)
T COG2984 234 VANKAKIPLIASDTSS----VKEGALAALGVDYKDLGKQTGEMVVKILKG 279 (322)
T ss_pred HHHHhCCCeecCCHHH----HhcCcceeeccCHHHHHHHHHHHHHHHHcC
Confidence 9999999999998543 44454433333433 233446667764
No 303
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.45 E-value=7.4e+02 Score=24.27 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHh----cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccccee
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 404 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~----~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~ 404 (473)
+.+++.++++|++-+.+. - -+.+++...+. ..|+++++........+...+..+..+++||++.. ...+.
T Consensus 150 ~~~~~~a~~~g~~l~~~~-v-~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v~ 223 (294)
T PF04392_consen 150 EQLRKAAKKLGIELVEIP-V-PSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS----DFYVK 223 (294)
T ss_dssp HHHHHHHHHTT-EEEEEE-E-SSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS----HHHHC
T ss_pred HHHHHHHHHcCCEEEEEe-c-CcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC----HHHhc
Confidence 456777778876422221 1 23566666555 56888875221122334445667788999999975 34455
Q ss_pred cCCceEEeCCH----HHHHHHHHHHHhC
Q 011979 405 VDKNGLLFSSS----SELADQLLMLFKG 428 (473)
Q Consensus 405 ~~~~G~~~~~~----~~la~~i~~l~~~ 428 (473)
+|..|-+..|. ..-++...++++.
T Consensus 224 ~Gal~~~~~~~~~~G~~Aa~~a~~IL~G 251 (294)
T PF04392_consen 224 AGALGGYSVDYYEQGRQAAEMAVRILKG 251 (294)
T ss_dssp TT-SEEEE--HHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEccCHHHHHHHHHHHHHHHHCC
Confidence 55554444442 3344445556554
No 304
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=22.42 E-value=99 Score=24.41 Aligned_cols=38 Identities=29% Similarity=0.114 Sum_probs=27.7
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011979 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~ 43 (473)
|-+.+++.|--..+.|+...|..|+++ |+.|..+-.++
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D~rG 53 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYDHRG 53 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEECCCc
Confidence 334455556445689999999999998 99998665443
No 305
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=22.41 E-value=5.9e+02 Score=24.84 Aligned_cols=78 Identities=4% Similarity=0.008 Sum_probs=49.5
Q ss_pred CCCEEEEEEcCC-----CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcC------cEEEEeccCCCCCCCcHHH
Q 011979 314 YPRLLFIITGKG-----PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA------DLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 314 ~~~~~l~ivG~g-----~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~a------di~v~~~~~s~~e~~p~kv 381 (473)
.+.-++++-|+. ++.+.+++.+-++|+ +.-.+... .+..-..+..... ++.|+ ++.. .++..+
T Consensus 80 gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~-~s~nT~en~~~a~~i~~~~~~iIV---Tq~f-Hm~RA~ 154 (239)
T PRK10834 80 GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY-AGFRTLDSIVRTRKVFDTNDFIII---TQRF-HCERAL 154 (239)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC-CCCCHHHHHHHHHHHhCCCCEEEE---CCHH-HHHHHH
Confidence 455578888863 233567778888898 33333333 4555555555444 35555 4432 378899
Q ss_pred HHHHhcCCcEEEecc
Q 011979 382 VDMFGCGLPVCAVSY 396 (473)
Q Consensus 382 ~Eama~G~PvI~~~~ 396 (473)
+-+-..|+.+++...
T Consensus 155 ~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 155 FIALHMGIQAQCYAV 169 (239)
T ss_pred HHHHHcCCceEEEeC
Confidence 999999999888643
No 306
>COG1647 Esterase/lipase [General function prediction only]
Probab=22.32 E-value=7.3e+02 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011979 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~ 43 (473)
.+.+....|..|...-+..++..|.++ ||.|++=.+.+
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~ypG 52 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRYPG 52 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCCCC
Confidence 366777778888888888899999998 99997644443
No 307
>PRK09004 FMN-binding protein MioC; Provisional
Probab=22.13 E-value=1.3e+02 Score=26.78 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=26.8
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEe
Q 011979 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVA 40 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~ 40 (473)
|+++.|++.+..|.+.++-......++..|++|.++.
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 3468888888888888887665444443599999864
No 308
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.60 E-value=1.8e+02 Score=24.65 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=38.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 318 ~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
+++|+|.|+-.-..-+.++++|++-|.+... .+........||-.++.
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~s~---~d~~s~~~~~ad~~~~~ 51 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVNSN---PDTVSTHVDMADEAYFE 51 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEEEG---GGTTGHHHHHSSEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceeccCc---hhcccccccccccceec
Confidence 6899999988888888999999877777655 67777788889888774
No 309
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.56 E-value=2.2e+02 Score=26.94 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=36.0
Q ss_pred CcEEEecCCCCcc---cHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEecc
Q 011979 341 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 341 ~~V~~~g~~v~~~---~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
++|.|.|-.+|.. +..+.+.+||++|+.= +| .-.....-+-++...|.|+|..+.
T Consensus 132 P~VV~FgE~lp~~~~~~a~~~~~~aDlllviG-TSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 132 DTIVDFGERLPPENWMGAAAAACRADLFLCLG-TSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEEC-cCceehhHHHHHHHHHhcCCeEEEECC
Confidence 5788887766643 6667778899999942 33 222222234467788999998764
No 310
>PRK05568 flavodoxin; Provisional
Probab=21.34 E-value=2e+02 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|+++.|++.+..|...++......-++..|++|.++-..
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345788888878777777665443333348899887654
No 311
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.14 E-value=83 Score=29.74 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.+.|++.+-+.|..|.-......+..|.+. |++|+++...
T Consensus 2 ~l~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~ 42 (196)
T PRK08305 2 SLKGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSY 42 (196)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECH
Confidence 3566777777776543211134556677775 9999998854
No 312
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=21.14 E-value=2.8e+02 Score=24.78 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 361 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~ 361 (473)
.|+-++++.|-|-....++++-+. ..|++++.+ +...+|++.+.
T Consensus 87 ~P~~k~ilY~LgL~~~~i~~L~~~--~~n~evr~F--n~s~YP~yV~n 130 (142)
T PF07801_consen 87 YPNHKIILYDLGLSEEQIKKLKKN--FCNVEVRKF--NFSKYPKYVNN 130 (142)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHhc--CCceEEEEC--CCccCcHHHHH
Confidence 899999999999877666655442 258888865 66667766553
No 313
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.07 E-value=8.1e+02 Score=24.17 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC-CCCcHHHHHHHhcCCcEEEecc
Q 011979 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~-e~~p~kv~Eama~G~PvI~~~~ 396 (473)
..+.+..+++|++-+.= . .+..++..+...+|++-. ++.. ..++ -+-++-..|+||+.++.
T Consensus 81 ~~l~~~~~~~Gl~~~te--~-~d~~~~~~l~~~vd~~kI---ga~~~~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 81 KILKEVGDKYNLPVVTE--V-MDTRDVEEVADYADMLQI---GSRNMQNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHcCCCEEEe--e-CChhhHHHHHHhCCEEEE---CcccccCHH-HHHHHhcCCCcEEEeCC
Confidence 45667777888643221 1 456677777677898888 4422 2222 44555668999999863
No 314
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=21.04 E-value=6.7e+02 Score=23.26 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=49.2
Q ss_pred CEEEEEEcCCCCh-HHHHHHHHHcCCC--cEEEecCCCC-cccHH----------------------HHHhcCcEEEEec
Q 011979 316 RLLFIITGKGPDK-ESYEEKIRRLRLK--RVAFRTMWLS-AEDYP----------------------LLLGSADLGVCLH 369 (473)
Q Consensus 316 ~~~l~ivG~g~~~-~~l~~~~~~~~l~--~V~~~g~~v~-~~~i~----------------------~~l~~adi~v~~~ 369 (473)
+-+++++|..+.. .-+++.++..+.. +-.++|+.+. ...+. .....-|++|+.
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~- 134 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVL- 134 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEe-
Confidence 5689999977543 4455555555532 2245544232 22221 133456888873
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEe-ccCccccce
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELV 403 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i 403 (473)
.... -...+-||..+|.|+|+- |.......+
T Consensus 135 --~~~~-~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i 166 (193)
T cd01425 135 --DPRK-EHQAIREASKLGIPVIAIVDTNCDPDLI 166 (193)
T ss_pred --CCcc-chHHHHHHHHcCCCEEEEecCCCCCccc
Confidence 3222 256899999999999996 455444444
No 315
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=20.81 E-value=2.2e+02 Score=29.31 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC-----------cccHHHHHhcCcEEEEe--ccCCCCCCCcHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVCL--HTSSSGLDLPMKV 381 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~-----------~~~i~~~l~~adi~v~~--~~~s~~e~~p~kv 381 (473)
.+-++-|+|-|.--..+-+.++.++ ..+.+..++.. ..++.+.+.+||+.++- .++....-+--++
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~ 239 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKF 239 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHH
Confidence 3457899998865555555555566 56777665332 34788899999999983 2222334467799
Q ss_pred HHHHhcCCcEEEeccC
Q 011979 382 VDMFGCGLPVCAVSYS 397 (473)
Q Consensus 382 ~Eama~G~PvI~~~~~ 397 (473)
+++|--|.-+|-+.-|
T Consensus 240 ~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 240 IEKMKDGAVLVNTARG 255 (336)
T ss_pred HHhcCCCeEEEecccc
Confidence 9999988888877544
No 316
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=20.70 E-value=3.9e+02 Score=26.33 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC
Q 011979 295 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~ 374 (473)
..|.+||-..++.+|++|... +.+++. .+++++. +...-+-+.++|+ ++.++++.+|-....++.|- ....
T Consensus 49 ~~~g~eV~~~divKgYeyg~g--~~V~~~----~eel~~~-~~~~~~~i~I~gF-v~~~~i~~~y~~~syyl~P~-~~~~ 119 (258)
T TIGR02772 49 SETGKEVEREEIVKGYEYDKG--KYVIIE----DEDIESL-PPESTKTIEIEAF-VDADEIDPIYFDTPYYLAPD-KGGE 119 (258)
T ss_pred CCCCCCCCHHHeeeeEEeCCC--CEEEcC----HHHHHhh-cccCCCeEEEEEE-eCHHHCChheeCCCEEEccC-CCch
Confidence 346677777788888776532 334444 2333332 2222257999999 99999987777778888863 1122
Q ss_pred CCCcHHHHHHHhc-CCcEEE
Q 011979 375 LDLPMKVVDMFGC-GLPVCA 393 (473)
Q Consensus 375 e~~p~kv~Eama~-G~PvI~ 393 (473)
..|. .+.+||.- |+-.|+
T Consensus 120 ~a~~-~L~~Al~~~~kvaIa 138 (258)
T TIGR02772 120 KAYA-LLREALEDTGKVGIA 138 (258)
T ss_pred HHHH-HHHHHHHHcCCEEEE
Confidence 2332 56677754 444444
No 317
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.64 E-value=8.1e+02 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.9
Q ss_pred cHHHHHh--cCcEEEEeccCC-CCCCCcHHHHHHHh--cCCcEEEe
Q 011979 354 DYPLLLG--SADLGVCLHTSS-SGLDLPMKVVDMFG--CGLPVCAV 394 (473)
Q Consensus 354 ~i~~~l~--~adi~v~~~~~s-~~e~~p~kv~Eama--~G~PvI~~ 394 (473)
++.+.++ .+|++|= .| .+-.|.-.+++.|+ |..|+|..
T Consensus 96 ~L~e~i~~v~ptvlIG---~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 96 SLLEVVKAVKPTVLIG---LSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CHHHHHHhcCCCEEEE---eCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 5666666 7788887 33 23357778888887 56777765
No 318
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.39 E-value=4.8e+02 Score=28.37 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=47.0
Q ss_pred EEEEEEcCC-------CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh--
Q 011979 317 LLFIITGKG-------PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG-- 386 (473)
Q Consensus 317 ~~l~ivG~g-------~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama-- 386 (473)
-.+.|+|.- .+..+++++++.+|+ -++.+.+. -+.+|+.. +..|++-|++ +.. ++..+.++|.
T Consensus 159 ~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g-~s~~di~~-l~~A~~nivl---~~~--~g~~~A~~Lee~ 231 (519)
T PRK02910 159 PSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLG-ASPADLKR-LPAAWFNVVL---YRE--IGESAARYLERE 231 (519)
T ss_pred CeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHh-cccCcEEEEe---CHH--HHHHHHHHHHHH
Confidence 467888752 244789999999999 46666665 56667666 4566666662 221 3457777765
Q ss_pred cCCcEEE
Q 011979 387 CGLPVCA 393 (473)
Q Consensus 387 ~G~PvI~ 393 (473)
+|.|.+.
T Consensus 232 fGiP~i~ 238 (519)
T PRK02910 232 FGQPYVK 238 (519)
T ss_pred hCCcccc
Confidence 7899875
No 319
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.36 E-value=8.2e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCcEEEEec
Q 011979 14 DLGRSPRMQYQALSLARQMSLEVDVVAY 41 (473)
Q Consensus 14 ~~g~s~r~~~~a~~L~~~~g~eV~vi~~ 41 (473)
..|-|.-..++|..+++. |..|-++=.
T Consensus 68 GvGKStva~nLA~alA~~-G~rVlliDa 94 (265)
T COG0489 68 GVGKSTVAVNLAAALAQL-GKRVLLLDA 94 (265)
T ss_pred CCcHHHHHHHHHHHHHhc-CCcEEEEeC
Confidence 344566667888999997 999999873
No 320
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.27 E-value=5.6e+02 Score=26.72 Aligned_cols=46 Identities=30% Similarity=0.376 Sum_probs=39.5
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
.+.++++ ++++++..++-.||+-++ .||+ +++=|.-+|+|.|=.-+
T Consensus 243 ~~~~LPf-~~Q~~yD~LLW~cD~NfV-----RGED---SFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 243 TVAVLPF-VPQDDYDRLLWACDLNFV-----RGED---SFVRAQWAGKPFVWHIY 288 (371)
T ss_pred EEEEcCC-CChhhHHHHHHhChhcEe-----echh---HHHHHHHcCCCceeecc
Confidence 5888888 999999999999999998 5543 67999999999997644
No 321
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.26 E-value=4.8e+02 Score=23.47 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=40.6
Q ss_pred EEEEEcCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 318 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 318 ~l~ivG~g~~~---~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
++.++|.|... ..+......+| .++.+.+. .....+..-|++|+...+......--.+-.|-..|.|+|+-
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~-----~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLG-FNVYVVGE-----TTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCC-CeEEEeCC-----cccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEE
Confidence 78899988643 33333333444 35555533 12245677899998422222221222334467789999996
Q ss_pred cc
Q 011979 395 SY 396 (473)
Q Consensus 395 ~~ 396 (473)
..
T Consensus 106 T~ 107 (179)
T TIGR03127 106 TT 107 (179)
T ss_pred EC
Confidence 43
No 322
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=20.22 E-value=3.5e+02 Score=19.70 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=37.7
Q ss_pred EEEEEcC-CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 318 LFIITGK-GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 318 ~l~ivG~-g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
.+.+.|- +++++.+.+++..+|- .+.+. + -.....+|+ .+ ..+-|.-.|...|+|||..
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg---~~~~~-l--------t~~~THLI~---~~---~~~~K~~~A~~~gi~vV~~ 61 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG---KYSKD-L--------TKKTTHLIC---SS---PEGKKYRKAKEWGIPVVSP 61 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT----EEESS-S--------STT-SEEEE---ES-----HHHHHHHHHCTSEEEEH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC---EEecc-c--------cCCceEEEE---eC---CCcHHHHHHHHCCCcEECC
Confidence 4556664 3567889999999882 33333 2 126666776 22 1355889999999999975
No 323
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.20 E-value=8.3e+02 Score=23.95 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=58.9
Q ss_pred EeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHHHHHHHcCCCc
Q 011979 264 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRLKR 342 (473)
Q Consensus 264 ~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~~ 342 (473)
++....-.+.+.+++.++.+++--... .+ ..++|-+.. | .-+-|.|.. -+.+++.++++|++-
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~~k~-~r------~~~~KpRts------p---~s~~g~g~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAGAKI-LR------GGAFKPRTS------P---YSFQGLGEEGLKLLRRAADEHGLPV 92 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHh-cc------CceecCCCC------C---ccccccHHHHHHHHHHHHHHhCCCE
Confidence 333555567888888888876621110 00 112221111 1 123333321 255677778888642
Q ss_pred EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 343 V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
.....+.+++..+...+|++-. +|..-.-.--+-++...|+||+.+..
T Consensus 93 ---~t~~~d~~~~~~l~~~~d~lkI---~s~~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 93 ---VTEVMDPRDVEIVAEYADILQI---GARNMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred ---EEeeCChhhHHHHHhhCCEEEE---CcccccCHHHHHHHhcCCCcEEEeCC
Confidence 2222456777777777898888 44322112233444557999999863
No 324
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=20.05 E-value=3.1e+02 Score=27.82 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHH-HcCCCcEEEecCCC----------CcccHHHHHhcCcEEEE--eccCCCCCCCcHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIR-RLRLKRVAFRTMWL----------SAEDYPLLLGSADLGVC--LHTSSSGLDLPMKV 381 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~-~~~l~~V~~~g~~v----------~~~~i~~~l~~adi~v~--~~~~s~~e~~p~kv 381 (473)
.+-++-|+|-|.--..+-+.++ .+|. +|.+..+.. ...++.+++..||+.++ |.++....-+.-..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHH
Confidence 3568999999976666666665 5554 455544321 12367889999999888 33333333367788
Q ss_pred HHHHhcCCcEEEec
Q 011979 382 VDMFGCGLPVCAVS 395 (473)
Q Consensus 382 ~Eama~G~PvI~~~ 395 (473)
++.|--|.-+|-+.
T Consensus 223 l~~mk~ga~lIN~a 236 (323)
T PRK15409 223 FAKMKSSAIFINAG 236 (323)
T ss_pred HhcCCCCeEEEECC
Confidence 88888776666553
No 325
>PRK13761 hypothetical protein; Provisional
Probab=20.01 E-value=8.2e+02 Score=23.82 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCCEEEEEEcCCCCh-HHHHHHHHHcCCCcEEEecCCCCcccHHHH-----------HhcCcEEEEeccCCCCCCCcHHH
Q 011979 314 YPRLLFIITGKGPDK-ESYEEKIRRLRLKRVAFRTMWLSAEDYPLL-----------LGSADLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~-~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~-----------l~~adi~v~~~~~s~~e~~p~kv 381 (473)
+-.+.+.+.-..+++ +.+.+..+++|.. .++|. -+...++.+ +..||++++|.-..-.
T Consensus 94 ~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~--~vlG~-~~~~~ip~L~~~R~~v~~~GIy~ADVVLVPLEDGDR------- 163 (248)
T PRK13761 94 NAKLEVNLFYRTEERVEKIAEVLREHGAK--EVLGT-DEDARIPGLDHERAKVSEDGIYSADVVLVPLEDGDR------- 163 (248)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHcCCc--eeeCC-CCcCcCCCCCCccceECcccceeccEEEecCCCCcH-------
Confidence 346888888876544 5566677777743 44443 112333322 5679999997655433
Q ss_pred HHHH-hcCCcEEEeccCcccccee
Q 011979 382 VDMF-GCGLPVCAVSYSCIEELVK 404 (473)
Q Consensus 382 ~Eam-a~G~PvI~~~~~~~~e~i~ 404 (473)
.||+ .+|+-||+.+...++..-+
T Consensus 164 ~EaL~~mGK~VI~IDLNPLSRTar 187 (248)
T PRK13761 164 TEALVKMGKTVIAIDLNPLSRTAR 187 (248)
T ss_pred HHHHHHcCCeEEEEeCCCcccccc
Confidence 3443 5899999999877766543
Done!