Query 011979
Match_columns 473
No_of_seqs 152 out of 1928
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 3.6E-38 1.2E-42 326.7 41.7 384 2-469 18-427 (438)
2 3okp_A GDP-mannose-dependent a 100.0 5.3E-38 1.8E-42 319.5 38.0 362 1-467 1-379 (394)
3 3fro_A GLGA glycogen synthase; 100.0 8.4E-38 2.9E-42 322.1 36.5 377 14-469 16-432 (439)
4 2r60_A Glycosyl transferase, g 100.0 1.9E-36 6.3E-41 320.5 39.4 376 15-469 32-461 (499)
5 2jjm_A Glycosyl transferase, g 100.0 1.1E-35 3.6E-40 304.6 37.6 361 7-470 18-388 (394)
6 2gek_A Phosphatidylinositol ma 100.0 4.5E-35 1.5E-39 299.4 30.4 357 2-469 18-385 (406)
7 2iw1_A Lipopolysaccharide core 100.0 8.2E-36 2.8E-40 301.6 20.8 346 4-454 1-359 (374)
8 2x6q_A Trehalose-synthase TRET 100.0 1.6E-35 5.3E-40 305.5 21.0 362 1-466 38-413 (416)
9 2qzs_A Glycogen synthase; glyc 100.0 3.2E-34 1.1E-38 301.8 29.7 289 100-469 128-478 (485)
10 1rzu_A Glycogen synthase 1; gl 100.0 1.1E-34 3.7E-39 305.3 25.9 290 99-469 128-477 (485)
11 3s28_A Sucrose synthase 1; gly 100.0 8.1E-34 2.8E-38 316.3 28.7 371 26-461 321-764 (816)
12 2iuy_A Avigt4, glycosyltransfe 100.0 7.5E-33 2.6E-37 278.1 21.8 293 15-469 29-337 (342)
13 3oy2_A Glycosyltransferase B73 100.0 7.5E-32 2.6E-36 277.4 28.3 269 100-469 80-392 (413)
14 3vue_A GBSS-I, granule-bound s 100.0 3.9E-30 1.3E-34 276.2 33.0 290 101-467 153-511 (536)
15 1f0k_A MURG, UDP-N-acetylgluco 100.0 7.4E-29 2.5E-33 250.5 25.8 329 5-459 7-350 (364)
16 2x0d_A WSAF; GT4 family, trans 100.0 9.2E-30 3.2E-34 264.9 15.4 262 100-470 131-412 (413)
17 3beo_A UDP-N-acetylglucosamine 100.0 1.7E-27 5.9E-32 241.2 19.3 263 100-456 94-366 (375)
18 2hy7_A Glucuronosyltransferase 99.9 3.1E-27 1.1E-31 244.9 18.8 328 5-461 15-372 (406)
19 1vgv_A UDP-N-acetylglucosamine 99.9 1.4E-26 4.8E-31 235.5 18.1 268 100-457 85-367 (384)
20 3qhp_A Type 1 capsular polysac 99.9 1.5E-25 5.1E-30 201.8 16.8 162 258-457 2-165 (166)
21 2vsy_A XCC0866; transferase, g 99.9 2.3E-25 7.9E-30 238.9 18.7 260 100-471 281-563 (568)
22 3rhz_A GTF3, nucleotide sugar 99.9 8.3E-24 2.8E-28 214.4 23.8 258 98-466 71-336 (339)
23 3nb0_A Glycogen [starch] synth 99.9 6E-23 2E-27 221.2 31.6 327 100-462 180-629 (725)
24 2bfw_A GLGA glycogen synthase; 99.9 3.8E-24 1.3E-28 198.2 19.0 151 260-448 38-197 (200)
25 1uqt_A Alpha, alpha-trehalose- 99.9 2.6E-22 8.8E-27 212.6 25.8 276 100-461 122-449 (482)
26 1v4v_A UDP-N-acetylglucosamine 99.9 1.4E-22 4.8E-27 205.7 22.3 268 99-465 89-363 (376)
27 2f9f_A First mannosyl transfer 99.9 2.1E-23 7.3E-28 190.9 14.6 154 252-445 18-176 (177)
28 2xci_A KDO-transferase, 3-deox 99.9 8.6E-22 2.9E-26 202.0 22.3 236 100-447 110-360 (374)
29 3t5t_A Putative glycosyltransf 99.8 6.8E-19 2.3E-23 185.7 30.6 268 101-452 149-459 (496)
30 3otg_A CALG1; calicheamicin, T 99.8 9.9E-19 3.4E-23 179.3 22.7 340 4-457 20-401 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.8 2.8E-18 9.6E-23 175.2 25.5 305 24-448 22-340 (365)
32 3dzc_A UDP-N-acetylglucosamine 99.8 7.4E-19 2.5E-23 181.6 18.7 269 100-463 110-394 (396)
33 3ot5_A UDP-N-acetylglucosamine 99.8 1.1E-17 3.8E-22 173.2 20.7 268 100-466 113-391 (403)
34 2iyf_A OLED, oleandomycin glyc 99.8 1.3E-16 4.5E-21 164.9 27.1 149 256-454 231-389 (430)
35 4fzr_A SSFS6; structural genom 99.7 1.1E-16 3.7E-21 164.0 19.0 150 255-456 225-392 (398)
36 3ia7_A CALG4; glycosysltransfe 99.7 2.8E-15 9.4E-20 152.7 25.2 350 3-456 3-390 (402)
37 3tsa_A SPNG, NDP-rhamnosyltran 99.7 5.8E-16 2E-20 157.8 17.6 154 255-457 216-381 (391)
38 3oti_A CALG3; calicheamicin, T 99.7 1.5E-15 5.3E-20 155.5 19.1 154 254-457 229-390 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 3E-14 1E-18 146.3 26.3 346 3-453 19-402 (415)
40 2p6p_A Glycosyl transferase; X 99.6 2.6E-13 8.8E-18 138.0 23.1 157 255-465 208-379 (384)
41 2iya_A OLEI, oleandomycin glyc 99.5 2.4E-11 8.2E-16 125.3 27.4 142 255-447 253-404 (424)
42 4hwg_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.8E-17 134.1 17.8 248 100-444 93-354 (385)
43 2yjn_A ERYCIII, glycosyltransf 99.4 1.6E-10 5.4E-15 120.1 25.9 148 255-455 265-426 (441)
44 3h4t_A Glycosyltransferase GTF 99.2 1.8E-09 6.1E-14 111.0 25.4 139 255-448 219-367 (404)
45 1iir_A Glycosyltransferase GTF 99.2 1.8E-09 6.2E-14 111.1 24.9 135 257-447 238-383 (415)
46 3q3e_A HMW1C-like glycosyltran 99.2 8.3E-09 2.8E-13 110.9 28.2 172 260-469 443-629 (631)
47 4amg_A Snogd; transferase, pol 99.1 4.2E-10 1.4E-14 114.4 15.0 144 254-447 234-383 (400)
48 1rrv_A Glycosyltransferase GTF 99.1 1.2E-08 4E-13 105.0 21.6 135 257-447 237-384 (416)
49 2o6l_A UDP-glucuronosyltransfe 99.1 5.3E-10 1.8E-14 100.7 10.0 134 256-447 20-165 (170)
50 3hbf_A Flavonoid 3-O-glucosylt 98.6 1.7E-05 5.8E-10 82.9 27.7 114 341-468 327-453 (454)
51 1l5w_A Maltodextrin phosphoryl 98.6 8.5E-06 2.9E-10 89.5 23.8 184 252-468 521-731 (796)
52 2c1x_A UDP-glucose flavonoid 3 98.5 2.5E-05 8.4E-10 81.7 25.7 112 341-468 325-451 (456)
53 2pq6_A UDP-glucuronosyl/UDP-gl 98.5 3.5E-05 1.2E-09 81.0 24.9 113 341-467 353-477 (482)
54 2vch_A Hydroquinone glucosyltr 98.3 0.0005 1.7E-08 72.2 30.5 91 344-447 341-443 (480)
55 2acv_A Triterpene UDP-glucosyl 98.3 0.001 3.4E-08 69.5 30.9 76 341-427 332-424 (463)
56 2gj4_A Glycogen phosphorylase, 98.0 5.9E-05 2E-09 83.2 14.9 183 252-468 545-755 (824)
57 3hbm_A UDP-sugar hydrolase; PS 98.0 0.00069 2.4E-08 66.2 20.1 66 318-396 186-252 (282)
58 2c4m_A Glycogen phosphorylase; 97.9 3.5E-05 1.2E-09 84.7 11.1 183 252-468 511-720 (796)
59 1psw_A ADP-heptose LPS heptosy 97.9 0.00059 2E-08 67.7 18.6 101 256-394 179-286 (348)
60 3l7i_A Teichoic acid biosynthe 97.8 0.00034 1.2E-08 77.3 17.7 260 123-468 432-719 (729)
61 4gyw_A UDP-N-acetylglucosamine 97.8 0.00033 1.1E-08 77.4 17.5 142 270-447 533-683 (723)
62 3tov_A Glycosyl transferase fa 97.8 0.0023 7.7E-08 64.3 21.1 104 254-395 182-287 (349)
63 2jzc_A UDP-N-acetylglucosamine 96.6 0.0016 5.4E-08 61.5 4.5 73 342-425 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 94.0 0.056 1.9E-06 52.9 5.6 132 256-428 177-322 (326)
65 1ygp_A Yeast glycogen phosphor 93.2 1.2 4.3E-05 49.1 14.8 141 259-419 601-767 (879)
66 3ehd_A Uncharacterized conserv 63.7 8.9 0.00031 33.8 5.2 70 357-426 65-161 (162)
67 3grc_A Sensor protein, kinase; 59.5 66 0.0022 25.6 10.0 107 316-428 6-127 (140)
68 2zay_A Response regulator rece 59.5 65 0.0022 25.9 9.8 108 315-428 7-128 (147)
69 2qsj_A DNA-binding response re 53.3 58 0.002 26.6 8.5 108 316-428 3-124 (154)
70 1fy2_A Aspartyl dipeptidase; s 51.3 35 0.0012 31.4 7.3 74 316-397 31-122 (229)
71 3cg4_A Response regulator rece 51.1 91 0.0031 24.7 10.6 107 315-427 6-126 (142)
72 3llv_A Exopolyphosphatase-rela 48.6 63 0.0022 26.4 8.0 66 100-184 69-134 (141)
73 2k6g_A Replication factor C su 48.5 72 0.0025 25.8 7.9 64 314-394 33-98 (109)
74 1rcu_A Conserved hypothetical 47.6 14 0.00046 33.6 3.6 70 353-425 110-192 (195)
75 3cnb_A DNA-binding response re 47.3 1E+02 0.0035 24.3 10.0 109 315-428 7-130 (143)
76 1k68_A Phytochrome response re 46.3 1E+02 0.0036 24.1 10.3 106 317-427 3-130 (140)
77 4e7p_A Response regulator; DNA 46.1 1.1E+02 0.0038 24.7 9.2 109 315-428 19-140 (150)
78 3eul_A Possible nitrate/nitrit 45.0 1.2E+02 0.004 24.5 9.2 111 313-428 12-135 (152)
79 3to5_A CHEY homolog; alpha(5)b 43.6 73 0.0025 26.5 7.5 108 315-427 11-132 (134)
80 1jbe_A Chemotaxis protein CHEY 43.5 1.1E+02 0.0038 23.6 9.8 107 316-427 4-124 (128)
81 3gt7_A Sensor protein; structu 42.2 85 0.0029 25.7 7.8 108 315-428 6-127 (154)
82 3f6c_A Positive transcription 42.1 1.2E+02 0.004 23.7 8.5 107 317-428 2-120 (134)
83 3heb_A Response regulator rece 42.0 1.4E+02 0.0046 24.1 10.4 106 317-427 5-134 (152)
84 3kht_A Response regulator; PSI 41.7 1.1E+02 0.0037 24.5 8.3 108 315-427 4-127 (144)
85 3h1g_A Chemotaxis protein CHEY 40.8 1.3E+02 0.0044 23.5 9.5 108 316-428 5-127 (129)
86 4f3y_A DHPR, dihydrodipicolina 40.6 29 0.001 33.0 5.0 76 316-397 7-106 (272)
87 3jte_A Response regulator rece 40.5 1.4E+02 0.0047 23.7 9.0 106 317-428 4-123 (143)
88 3hzh_A Chemotaxis response reg 40.3 1.2E+02 0.0041 24.8 8.5 107 316-427 36-156 (157)
89 3ilh_A Two component response 40.1 1.4E+02 0.0047 23.6 8.7 109 315-428 8-139 (146)
90 2zki_A 199AA long hypothetical 39.3 19 0.00065 31.7 3.3 41 1-43 1-42 (199)
91 3mm4_A Histidine kinase homolo 38.6 1.1E+02 0.0039 26.7 8.5 109 315-428 60-196 (206)
92 3vnd_A TSA, tryptophan synthas 38.5 1.7E+02 0.0058 27.5 10.0 104 316-423 123-243 (267)
93 2f62_A Nucleoside 2-deoxyribos 38.3 64 0.0022 28.1 6.4 40 356-395 62-105 (161)
94 1k66_A Phytochrome response re 37.9 1.5E+02 0.0051 23.4 9.5 107 316-427 6-137 (149)
95 3en0_A Cyanophycinase; serine 37.7 1.1E+02 0.0038 29.3 8.6 83 315-397 55-154 (291)
96 2ebu_A Replication factor C su 37.6 1.2E+02 0.0041 24.7 7.6 65 314-395 23-89 (112)
97 2vxb_A DNA repair protein RHP9 37.3 37 0.0013 31.5 5.1 69 315-395 4-97 (241)
98 3nbm_A PTS system, lactose-spe 37.0 49 0.0017 26.8 5.1 70 319-395 10-85 (108)
99 2b4a_A BH3024; flavodoxin-like 36.4 1.6E+02 0.0053 23.2 9.4 111 312-428 11-131 (138)
100 2nzw_A Alpha1,3-fucosyltransfe 36.3 2.5E+02 0.0084 27.9 11.1 82 352-440 222-308 (371)
101 2lpm_A Two-component response 36.2 51 0.0018 27.1 5.3 110 313-427 5-121 (123)
102 4fyk_A Deoxyribonucleoside 5'- 36.1 51 0.0018 28.5 5.4 71 356-428 63-142 (152)
103 1zq6_A Otcase, ornithine carba 35.8 2.5E+02 0.0087 27.7 11.1 70 260-368 194-272 (359)
104 3gd5_A Otcase, ornithine carba 35.2 3.2E+02 0.011 26.5 11.8 172 104-368 51-232 (323)
105 3h5i_A Response regulator/sens 34.8 1.7E+02 0.0058 23.2 9.8 107 316-427 5-123 (140)
106 3zqu_A Probable aromatic acid 34.8 42 0.0014 30.7 4.8 40 1-42 1-40 (209)
107 2qv0_A Protein MRKE; structura 32.8 1.8E+02 0.0062 22.9 9.3 108 315-427 8-126 (143)
108 3glr_A NAD-dependent deacetyla 32.3 1.3E+02 0.0044 28.7 8.1 99 341-445 175-278 (285)
109 2l2q_A PTS system, cellobiose- 32.3 1.7E+02 0.0057 23.2 7.7 90 319-427 8-104 (109)
110 2qvg_A Two component response 32.2 1.8E+02 0.0063 22.8 8.6 107 316-427 7-134 (143)
111 1jg7_A BGT, DNA beta-glucosylt 31.9 3.1E+02 0.011 25.3 11.1 147 257-445 180-329 (351)
112 1vl6_A Malate oxidoreductase; 31.7 1.4E+02 0.0049 29.8 8.5 77 314-394 190-292 (388)
113 2khz_A C-MYC-responsive protei 31.1 70 0.0024 27.7 5.5 69 357-428 73-151 (165)
114 1q1a_A HST2 protein; ternary c 30.9 1.3E+02 0.0045 28.5 8.0 85 341-427 175-278 (289)
115 1p6q_A CHEY2; chemotaxis, sign 30.8 1.8E+02 0.0062 22.3 8.0 106 317-427 7-126 (129)
116 3ijp_A DHPR, dihydrodipicolina 29.7 45 0.0015 32.0 4.3 76 316-397 21-121 (288)
117 4had_A Probable oxidoreductase 29.6 1.7E+02 0.006 27.9 8.8 69 314-394 46-116 (350)
118 1e2b_A Enzyme IIB-cellobiose; 29.3 1.3E+02 0.0045 23.9 6.5 47 318-367 6-56 (106)
119 1s2d_A Purine trans deoxyribos 29.0 19 0.00064 31.8 1.3 39 357-395 77-116 (167)
120 1i3c_A Response regulator RCP1 28.7 2.3E+02 0.0077 22.7 10.4 108 315-427 7-136 (149)
121 3rys_A Adenosine deaminase 1; 28.4 1.4E+02 0.0049 29.1 7.9 115 316-447 193-318 (343)
122 3dhn_A NAD-dependent epimerase 28.1 67 0.0023 28.3 5.1 53 1-62 1-54 (227)
123 4dad_A Putative pilus assembly 28.0 1.1E+02 0.0038 24.5 6.1 110 314-428 18-141 (146)
124 3lte_A Response regulator; str 27.8 2.1E+02 0.0072 22.1 8.1 107 316-428 6-125 (132)
125 4fb5_A Probable oxidoreductase 27.8 97 0.0033 29.9 6.6 69 314-394 54-124 (393)
126 3av3_A Phosphoribosylglycinami 27.4 1E+02 0.0035 27.9 6.2 57 3-62 2-60 (212)
127 3kb6_A D-lactate dehydrogenase 26.6 1.5E+02 0.005 28.8 7.6 81 316-397 141-232 (334)
128 1qkk_A DCTD, C4-dicarboxylate 26.6 2.5E+02 0.0085 22.5 10.0 107 316-428 3-121 (155)
129 3i42_A Response regulator rece 25.7 2.3E+02 0.0077 21.7 8.4 107 316-428 3-122 (127)
130 2r25_B Osmosensing histidine p 25.6 2.4E+02 0.0083 22.0 9.8 107 317-428 3-127 (133)
131 1i1q_B Anthranilate synthase c 25.4 2.7E+02 0.0092 24.1 8.6 69 326-395 11-83 (192)
132 2j48_A Two-component sensor ki 25.4 1.3E+02 0.0044 22.5 5.8 104 318-427 3-117 (119)
133 2ixd_A LMBE-related protein; h 25.2 2.8E+02 0.0095 25.4 8.9 39 1-42 1-40 (242)
134 2qzj_A Two-component response 25.0 1.9E+02 0.0065 22.8 7.0 106 316-427 4-120 (136)
135 2qxy_A Response regulator; reg 25.0 1.4E+02 0.0049 23.6 6.2 106 316-428 4-121 (142)
136 2qr3_A Two-component system re 25.0 2.4E+02 0.0084 21.9 9.2 108 317-428 4-126 (140)
137 1mb3_A Cell division response 24.9 2.2E+02 0.0076 21.6 7.2 105 318-428 3-121 (124)
138 2iz6_A Molybdenum cofactor car 24.7 68 0.0023 28.3 4.3 72 354-428 100-174 (176)
139 3gl9_A Response regulator; bet 24.5 2.4E+02 0.0082 21.6 9.3 104 318-427 4-121 (122)
140 4ew6_A D-galactose-1-dehydroge 24.4 97 0.0033 29.8 5.8 75 315-394 24-111 (330)
141 3vot_A L-amino acid ligase, BL 24.2 2.7E+02 0.0093 27.3 9.3 38 1-44 1-39 (425)
142 1vi6_A 30S ribosomal protein S 24.1 95 0.0032 28.3 5.2 82 317-403 69-154 (208)
143 3n53_A Response regulator rece 23.9 2.6E+02 0.009 21.9 8.2 105 317-428 4-122 (140)
144 3m6m_D Sensory/regulatory prot 23.8 2.6E+02 0.009 22.2 7.8 108 315-428 13-136 (143)
145 2rjn_A Response regulator rece 23.7 2.8E+02 0.0096 22.1 9.4 108 315-428 6-126 (154)
146 3nav_A Tryptophan synthase alp 23.6 4.6E+02 0.016 24.6 12.4 97 316-414 125-238 (271)
147 3sho_A Transcriptional regulat 23.2 2.4E+02 0.0083 24.0 7.7 73 318-395 41-121 (187)
148 1q14_A HST2 protein; histone d 23.0 2.9E+02 0.0098 27.2 8.9 80 358-443 216-298 (361)
149 1h6d_A Precursor form of gluco 22.6 1.2E+02 0.0043 30.3 6.3 70 315-394 107-180 (433)
150 3mcu_A Dipicolinate synthase, 22.3 83 0.0028 28.6 4.4 42 1-43 2-43 (207)
151 3n7t_A Macrophage binding prot 22.2 1.2E+02 0.0042 28.1 5.7 41 3-44 8-59 (247)
152 1ydg_A Trp repressor binding p 22.1 73 0.0025 28.2 4.0 43 1-43 3-45 (211)
153 3gh1_A Predicted nucleotide-bi 21.9 6.4E+02 0.022 25.6 12.2 70 353-427 239-333 (462)
154 3f6r_A Flavodoxin; FMN binding 21.9 1.4E+02 0.0048 24.5 5.6 56 5-62 2-58 (148)
155 3l4e_A Uncharacterized peptida 21.7 1.4E+02 0.0048 26.8 5.9 64 329-397 47-122 (206)
156 2v4u_A CTP synthase 2; pyrimid 21.6 62 0.0021 30.8 3.6 76 316-395 25-126 (289)
157 3kcq_A Phosphoribosylglycinami 21.6 1.5E+02 0.0052 26.9 6.1 80 1-107 5-88 (215)
158 1l7b_A DNA ligase; BRCT, autos 21.5 1.4E+02 0.0047 23.3 5.0 63 315-395 9-72 (92)
159 3hn2_A 2-dehydropantoate 2-red 21.5 69 0.0024 30.5 4.0 46 5-60 3-48 (312)
160 1xdw_A NAD+-dependent (R)-2-hy 21.5 2.8E+02 0.0095 26.7 8.4 81 315-396 145-235 (331)
161 3cg0_A Response regulator rece 21.4 2.9E+02 0.0099 21.4 8.7 109 315-427 8-127 (140)
162 3ty2_A 5'-nucleotidase SURE; s 21.4 97 0.0033 29.3 4.8 40 3-44 8-48 (261)
163 3hdv_A Response regulator; PSI 21.1 2.9E+02 0.01 21.4 10.4 107 316-428 7-127 (136)
164 3kto_A Response regulator rece 21.0 1.8E+02 0.0062 22.9 6.0 107 316-428 6-126 (136)
165 3pnx_A Putative sulfurtransfer 20.9 42 0.0014 29.3 2.1 41 1-42 2-42 (160)
166 3auf_A Glycinamide ribonucleot 20.9 2.2E+02 0.0074 26.1 7.1 57 3-62 21-79 (229)
167 3lua_A Response regulator rece 20.8 2.1E+02 0.0073 22.4 6.5 106 316-428 4-127 (140)
168 3e9m_A Oxidoreductase, GFO/IDH 20.6 5.3E+02 0.018 24.2 11.0 68 315-394 28-97 (330)
169 1ml4_A Aspartate transcarbamoy 20.6 5.3E+02 0.018 24.7 10.1 127 161-367 95-227 (308)
170 1id1_A Putative potassium chan 20.4 3.5E+02 0.012 22.1 11.5 66 100-184 70-136 (153)
171 4gxw_A Adenosine deaminase; am 20.4 4E+02 0.014 26.3 9.5 116 316-447 210-339 (380)
172 3hdg_A Uncharacterized protein 20.2 3.1E+02 0.01 21.3 8.1 107 316-428 7-125 (137)
173 2rdm_A Response regulator rece 20.1 3E+02 0.01 21.1 9.9 105 316-428 5-123 (132)
174 1eiw_A Hypothetical protein MT 20.0 83 0.0028 25.6 3.5 70 357-427 34-109 (111)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=3.6e-38 Score=326.73 Aligned_cols=384 Identities=17% Similarity=0.181 Sum_probs=270.4
Q ss_pred CCCCeEEEEEec----------CCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcc-cccCCCEEEEEeecCCCCCC
Q 011979 2 GRRGRACVVVLG----------DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPR 69 (473)
Q Consensus 2 ~~~~~~~i~~~~----------~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~-~~~~~~i~i~~~~~~~~~~~ 69 (473)
.+|++++++... ..||..+ +..++..|.++ ||+|+|++......... ....+++++++++..+....
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~ 96 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ-GIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGL 96 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT-TCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEecCCCCCCcccccccCCeEEEEecCCCcccc
Confidence 456677766642 2355444 34566777776 99999999765422111 12246899999883221111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCC-
Q 011979 70 GLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR- 148 (473)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~- 148 (473)
....+...+..+.+.+ +...+.+..+||+||+|. .....++.++++..++|+|+++|+....... ....
T Consensus 97 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~Div~~~~---~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-~~~~~ 166 (438)
T 3c48_A 97 SKEELPTQLAAFTGGM------LSFTRREKVTYDLIHSHY---WLSGQVGWLLRDLWRIPLIHTAHTLAAVKNS-YRDDS 166 (438)
T ss_dssp CGGGGGGGHHHHHHHH------HHHHHHHTCCCSEEEEEH---HHHHHHHHHHHHHHTCCEEEECSSCHHHHSC-C----
T ss_pred chhHHHHHHHHHHHHH------HHHHHhccCCCCEEEeCC---ccHHHHHHHHHHHcCCCEEEEecCCcccccc-ccccc
Confidence 1111222221111111 111122223599999997 3334345566666789999999998532110 0111
Q ss_pred CchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc---eEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCC
Q 011979 149 RSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLG 224 (473)
Q Consensus 149 ~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~---~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~ 224 (473)
.........++++.+.+.+|.++++|+.+++.+.+.+|.+ +.+++|+. .+.|.+.....+..++.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~-------- 238 (438)
T 3c48_A 167 DTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELG-------- 238 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTT--------
T ss_pred CCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcC--------
Confidence 1111233456778888999999999999999998878764 88999994 45666553333334555544
Q ss_pred cccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHh
Q 011979 225 VQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 304 (473)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (473)
+++++ .+++|+|++.+.||++.+++|+..+.++
T Consensus 239 ----------------------------~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~~------------------ 271 (438)
T 3c48_A 239 ----------------------------IPLHT-KVVAFVGRLQPFKGPQVLIKAVAALFDR------------------ 271 (438)
T ss_dssp ----------------------------CCSSS-EEEEEESCBSGGGCHHHHHHHHHHHHHH------------------
T ss_pred ----------------------------CCCCC-cEEEEEeeecccCCHHHHHHHHHHHHhh------------------
Confidence 22233 3899999999999999999999999873
Q ss_pred hhccCccccCC--CEEEEEEcC----CCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCC
Q 011979 305 EISDGKQYLYP--RLLFIITGK----GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDL 377 (473)
Q Consensus 305 ~~~~~~~~~~~--~~~l~ivG~----g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~ 377 (473)
.| +++|+|+|+ |+..+.++++++++++ ++|.|+|. ++.+++..+|+.||++|+ +|..|++
T Consensus 272 ---------~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~e~~ 338 (438)
T 3c48_A 272 ---------DPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDP-RPPSELVAVYRAADIVAV---PSFNESF 338 (438)
T ss_dssp ---------CTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECC-CCHHHHHHHHHHCSEEEE---CCSCCSS
T ss_pred ---------CCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCC-CChHHHHHHHHhCCEEEE---CccccCC
Confidence 45 899999999 8888899999999999 79999998 999999999999999999 6788999
Q ss_pred cHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHH
Q 011979 378 PMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 455 (473)
Q Consensus 378 p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 455 (473)
|++++|||+||+|||+++.++..+++.++.+|++++ |+++++++|.+++++ ++.+++|++++++...+++|+..
T Consensus 339 ~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~ 414 (438)
T 3c48_A 339 GLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD----DETRIRMGEDAVEHARTFSWAAT 414 (438)
T ss_dssp CHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999997 799999999999995 89999999999998866999877
Q ss_pred HHHHHHHHHHHHhh
Q 011979 456 WEEHAKPLITEVIS 469 (473)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (473)
.+++ ..+++++++
T Consensus 415 ~~~~-~~~~~~~~~ 427 (438)
T 3c48_A 415 AAQL-SSLYNDAIA 427 (438)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHhh
Confidence 6663 445555543
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=5.3e-38 Score=319.46 Aligned_cols=362 Identities=14% Similarity=0.110 Sum_probs=270.9
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCC-cccccCCCEEEEEeecCCCCCCCCcchhHHH
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPV 78 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~-~g~eV~vi~~~~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 78 (473)
|+++++++++........++....+..+++. .||+|+|++....... .......++++++++... ........
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 75 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQDPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSV-----MLPTPTTA 75 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTSCGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSS-----CCSCHHHH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHhcCCeEEEEECCCCccchhhhccccceEEEEccccc-----cccchhhH
Confidence 7777778777654333345565556666654 4999999998754321 233346789999988311 11122223
Q ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCC-eEEEEecCchhhhhhhhcCCCchHHHHHH
Q 011979 79 LLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRS-AFIVDWHNFGYTLLSLSLGRRSHFVSIYR 157 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 157 (473)
..+.+.+. ..+||+||++.+...... +.+++. .++ ++|+++|+.... .. .. ...+
T Consensus 76 ~~l~~~~~------------~~~~Dvv~~~~~~~~~~~--~~~~~~-~~~~~~i~~~h~~~~~-----~~-~~---~~~~ 131 (394)
T 3okp_A 76 HAMAEIIR------------EREIDNVWFGAAAPLALM--AGTAKQ-AGASKVIASTHGHEVG-----WS-ML---PGSR 131 (394)
T ss_dssp HHHHHHHH------------HTTCSEEEESSCTTGGGG--HHHHHH-TTCSEEEEECCSTHHH-----HT-TS---HHHH
T ss_pred HHHHHHHH------------hcCCCEEEECCcchHHHH--HHHHHh-cCCCcEEEEeccchhh-----hh-hc---chhh
Confidence 33333332 278999999886444322 334443 455 488899987321 11 11 2334
Q ss_pred HHHHHHhhcCCEEEEcCHHHHHHHHHHhCC--ceEEeeCC-CCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 158 WIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 158 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~--~~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
.+.+.+.+.+|.++++|+.+++.+.+.++. ++.+++|+ +.+.|.+.....+..++.+++
T Consensus 132 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~------------------ 193 (394)
T 3okp_A 132 QSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLG------------------ 193 (394)
T ss_dssp HHHHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcC------------------
Confidence 566777789999999999999999988866 48999999 456777756666777777765
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++++++ .++|+|++.+.||++.+++|+..+.++ .
T Consensus 194 ------------------~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~---------------------------~ 227 (394)
T 3okp_A 194 ------------------FTDTTP-VIACNSRLVPRKGQDSLIKAMPQVIAA---------------------------R 227 (394)
T ss_dssp ------------------CCTTCC-EEEEESCSCGGGCHHHHHHHHHHHHHH---------------------------S
T ss_pred ------------------CCcCce-EEEEEeccccccCHHHHHHHHHHHHhh---------------------------C
Confidence 223333 899999999999999999999999873 6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC-------CCCcHHHHHHHh
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-------LDLPMKVVDMFG 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~-------e~~p~kv~Eama 386 (473)
|+++|+|+|+|+..+.+++++ .++ ++|.|+|. ++.+++..+|+.||++|+ +|.. |++|++++|||+
T Consensus 228 ~~~~l~i~G~g~~~~~l~~~~--~~~~~~v~~~g~-~~~~~~~~~~~~ad~~v~---ps~~~~~~~~~e~~~~~~~Ea~a 301 (394)
T 3okp_A 228 PDAQLLIVGSGRYESTLRRLA--TDVSQNVKFLGR-LEYQDMINTLAAADIFAM---PARTRGGGLDVEGLGIVYLEAQA 301 (394)
T ss_dssp TTCEEEEECCCTTHHHHHHHT--GGGGGGEEEEES-CCHHHHHHHHHHCSEEEE---CCCCBGGGTBCCSSCHHHHHHHH
T ss_pred CCeEEEEEcCchHHHHHHHHH--hcccCeEEEcCC-CCHHHHHHHHHhCCEEEe---cCccccccccccccCcHHHHHHH
Confidence 899999999999998888888 555 79999998 999999999999999999 5665 999999999999
Q ss_pred cCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH
Q 011979 387 CGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATEWEEHAKPL 463 (473)
Q Consensus 387 ~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~ 463 (473)
+|+|||+++.++..|++.++ +|++++ |+++++++|.+++++ ++.++++++++++... .|+|+...++. ..+
T Consensus 302 ~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~ 375 (394)
T 3okp_A 302 CGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDD----PIRRAAMGAAGRAHVEAEWSWEIMGERL-TNI 375 (394)
T ss_dssp TTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHTBHHHHHHHH-HHH
T ss_pred cCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHH
Confidence 99999999999999999988 999997 899999999999995 9999999999998774 58998776664 444
Q ss_pred HHHH
Q 011979 464 ITEV 467 (473)
Q Consensus 464 ~~~~ 467 (473)
++++
T Consensus 376 ~~~~ 379 (394)
T 3okp_A 376 LQSE 379 (394)
T ss_dssp HHSC
T ss_pred HHHh
Confidence 4443
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=8.4e-38 Score=322.10 Aligned_cols=377 Identities=17% Similarity=0.124 Sum_probs=268.0
Q ss_pred CCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCccc-----------------ccCCCEEEEEeecCCCCCCCCcc-h
Q 011979 14 DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAI-----------------LEHPSIHIHTMTQWPTIPRGLPK-V 74 (473)
Q Consensus 14 ~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~-----------------~~~~~i~i~~~~~~~~~~~~~~~-~ 74 (473)
..||.++ +..++..|+++ ||+|+|+++......... ...+|+++++++........... .
T Consensus 16 ~~gG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~ 94 (439)
T 3fro_A 16 KVGGLAEALTAISEALASL-GHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPG 94 (439)
T ss_dssp CSSSHHHHHHHHHHHHHHT-TCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEEESGGGGCSSTTCSH
T ss_pred ccCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEecchhccccccccCC
Confidence 4566555 44567888887 999999997654432110 04579999999841111111110 1
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhh-c--CCCc
Q 011979 75 LKP-VLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS-L--GRRS 150 (473)
Q Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~--~~~~ 150 (473)
... ...+.........++..++.+..+||+||+|++ ....++.++++..++|+|+++|+......... . ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~---~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~ 171 (439)
T 3fro_A 95 WDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDW---HTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLS 171 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESG---GGHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCG
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecch---hhhhhHHHHhhccCCCEEEEecccccccCchHHhCccccc
Confidence 111 111222222222233333323469999999984 33445666667788999999999852110000 0 0000
Q ss_pred hH-HHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHh---CCceEEeeCC-CCCCcccC-----ChhHHHHHHHhhhhhcc
Q 011979 151 HF-VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNW---GIKATVLYDQ-PPEFFHPT-----SLEEKHELFCRLNKILH 220 (473)
Q Consensus 151 ~~-~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~---g~~~~vi~n~-~~~~f~~~-----~~~~~~~l~~~l~~~~~ 220 (473)
.. ......+++...+.||.++++|+.+++.....+ ..++.+++|+ +.+.|.|. ..+.+.+++.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~---- 247 (439)
T 3fro_A 172 ELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFG---- 247 (439)
T ss_dssp GGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHT----
T ss_pred cccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcC----
Confidence 00 000014577778899999999999998855533 4458999999 44666654 2335566666665
Q ss_pred CCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeecc-CCCCHHHHHHHHHHhHHHHHhhhccCCCchh
Q 011979 221 QPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNE 299 (473)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~ 299 (473)
++++ .+++|+|++. +.||++.+++|+..+.+
T Consensus 248 --------------------------------~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------------- 279 (439)
T 3fro_A 248 --------------------------------MDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSS-------------- 279 (439)
T ss_dssp --------------------------------CCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHT--------------
T ss_pred --------------------------------CCCC--cEEEEEcccccccccHHHHHHHHHHHHh--------------
Confidence 2223 4999999999 99999999999999876
Q ss_pred hHHHhhhccCccccC--CCEEEEEEcCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCC
Q 011979 300 EVFLKEISDGKQYLY--PRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL 375 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~--~~~~l~ivG~g~~~--~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e 375 (473)
.. ++++|+|+|+|+.. +.+++++++++ +.+.|.|. ++.+++..+|+.||++|+ ||..|
T Consensus 280 -------------~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~-~~~~~~~~~~~~adv~v~---ps~~e 341 (439)
T 3fro_A 280 -------------KKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEM-LSREFVRELYGSVDFVII---PSYFE 341 (439)
T ss_dssp -------------SGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSC-CCHHHHHHHHTTCSEEEE---CBSCC
T ss_pred -------------cccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCC-CCHHHHHHHHHHCCEEEe---CCCCC
Confidence 23 78999999999877 88999999998 67777776 999999999999999999 67779
Q ss_pred CCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Q 011979 376 DLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA 453 (473)
Q Consensus 376 ~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 453 (473)
++|++++||||||+|||+++.++..|++.++ +|++++ |+++++++|.++++. |++.+++|++++++..++++|+
T Consensus 342 ~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~---~~~~~~~~~~~~~~~~~~~s~~ 417 (439)
T 3fro_A 342 PFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALEL---SRSDLSKFRENCKKRAMSFSWE 417 (439)
T ss_dssp SSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHTSCHH
T ss_pred CccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhCcHH
Confidence 9999999999999999999999999999877 999997 799999999999983 3788999999999988889998
Q ss_pred HHHHHHHHHHHHHHhh
Q 011979 454 TEWEEHAKPLITEVIS 469 (473)
Q Consensus 454 ~~~~~~~~~~~~~~~~ 469 (473)
...+++. .+++++++
T Consensus 418 ~~~~~~~-~~~~~~~~ 432 (439)
T 3fro_A 418 KSAERYV-KAYTGSID 432 (439)
T ss_dssp HHHHHHH-HHHHTCSC
T ss_pred HHHHHHH-HHHHHHHH
Confidence 8877744 45555543
No 4
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.9e-36 Score=320.55 Aligned_cols=376 Identities=14% Similarity=0.082 Sum_probs=265.5
Q ss_pred CCCChhH-HHHHHHHHhhCCCcEEEEecCCCCCC-cc----cc---cCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHH
Q 011979 15 LGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPH-AA----IL---EHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (473)
Q Consensus 15 ~g~s~r~-~~~a~~L~~~~g~eV~vi~~~~~~~~-~~----~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (473)
.||.++. ..++..|++. ||+|+|+|....... +. .. ..+|+++++++..+............+.. ..
T Consensus 32 ~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~---~~ 107 (499)
T 2r60_A 32 FGGQLVYVKEVSLALAEM-GVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYLHE---YV 107 (499)
T ss_dssp BSHHHHHHHHHHHHHHHT-TCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSSCCCGGGCGGGHHH---HH
T ss_pred CCCeeehHHHHHHHHHhc-CCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEecCCCcCCcCHHHHHHHHHH---HH
Confidence 3544444 3456777776 999999997643211 11 11 14699999998322111111111111111 11
Q ss_pred HHHHHHHHHHhhhh-CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCC--C-chHHH-----HH
Q 011979 86 IQFFMLLWFLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR--R-SHFVS-----IY 156 (473)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~--~-~~~~~-----~~ 156 (473)
.. +..++.+. .+||+||+|.+ ....++.++++..++|+|++.|+............ . ..+.+ ..
T Consensus 108 ~~----l~~~l~~~~~~~Divh~~~~---~~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (499)
T 2r60_A 108 NK----IINFYREEGKFPQVVTTHYG---DGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRR 180 (499)
T ss_dssp HH----HHHHHHHHTCCCSEEEEEHH---HHHHHHHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHH
T ss_pred HH----HHHHHHhcCCCCCEEEEcCC---cchHHHHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHH
Confidence 11 11122222 48999999983 33434666677778999999999853222110000 0 11111 23
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHH--hC-C-------ceEEeeCC-CCCCcccCC-hhHHHHHHHhhhhhccCCCC
Q 011979 157 RWIEKYYGKMANGCLCVTQAMQHELAQN--WG-I-------KATVLYDQ-PPEFFHPTS-LEEKHELFCRLNKILHQPLG 224 (473)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~--~g-~-------~~~vi~n~-~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~ 224 (473)
.++++.+.+.+|.++++|+.+++.+.+. +| . ++.+++|+ +.+.|.+.. .+.+.+++.+++...
T Consensus 181 ~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~----- 255 (499)
T 2r60_A 181 IIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDL----- 255 (499)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccc-----
Confidence 3567888899999999999999998887 67 4 48999999 446676653 234455666654100
Q ss_pred cccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHh
Q 011979 225 VQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 304 (473)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (473)
...+++.+ +++|+|++.+.||++.+++|+..+.++
T Consensus 256 --------------------------~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~------------------ 290 (499)
T 2r60_A 256 --------------------------GSERMELP-AIIASSRLDQKKNHYGLVEAYVQNKEL------------------ 290 (499)
T ss_dssp --------------------------CGGGTTSC-EEEECSCCCGGGCHHHHHHHHHTCHHH------------------
T ss_pred --------------------------cccCCCCc-EEEEeecCccccCHHHHHHHHHHHHHh------------------
Confidence 00122334 899999999999999999999998763
Q ss_pred hhccCccccCC-CEEEEEEcC--CC------C-------hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcC----c
Q 011979 305 EISDGKQYLYP-RLLFIITGK--GP------D-------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----D 363 (473)
Q Consensus 305 ~~~~~~~~~~~-~~~l~ivG~--g~------~-------~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~a----d 363 (473)
.+ .++|+|+|+ |+ . .++++++++++++ ++|.|+|. ++.+++..+|+.| |
T Consensus 291 ---------~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~-v~~~~~~~~~~~a~~~~d 360 (499)
T 2r60_A 291 ---------QDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPL-NSQQELAGCYAYLASKGS 360 (499)
T ss_dssp ---------HHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEEC-CSHHHHHHHHHHHHHTTC
T ss_pred ---------CCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCC-CCHHHHHHHHHhcCcCCC
Confidence 23 368999998 44 1 6789999999999 79999998 9999999999999 9
Q ss_pred EEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011979 364 LGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRN 441 (473)
Q Consensus 364 i~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~ 441 (473)
++|+ ||..|+||++++||||||+|||+++.++..|++.++.+|++++ |+++++++|.+++++ ++.+++|++
T Consensus 361 v~v~---pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~----~~~~~~~~~ 433 (499)
T 2r60_A 361 VFAL---TSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES----EETWSAYQE 433 (499)
T ss_dssp EEEE---CCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSC----HHHHHHHHH
T ss_pred EEEE---CcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHH
Confidence 9999 6888999999999999999999999999999999999999996 799999999999985 899999999
Q ss_pred HHHHhccc-cchHHHHHHHHHHHHHHHhh
Q 011979 442 GTLEMGLS-ARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 442 ~~~~~~~~-~~w~~~~~~~~~~~~~~~~~ 469 (473)
++++...+ |+|+...+++ ..++++++.
T Consensus 434 ~a~~~~~~~fs~~~~~~~~-~~~y~~~~~ 461 (499)
T 2r60_A 434 KGKQRVEERYTWQETARGY-LEVIQEIAD 461 (499)
T ss_dssp HHHHHHHHHSBHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHh
Confidence 99988855 9998877764 344454443
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.1e-35 Score=304.58 Aligned_cols=361 Identities=15% Similarity=0.182 Sum_probs=259.9
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHH
Q 011979 7 ACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (473)
Q Consensus 7 ~~i~~~~~~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (473)
++....+..||.++.. .++..|+++ ||+|+|++....... ....+++.++.++....+. .......+....++
T Consensus 18 ~~~~~~p~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~--~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l- 91 (394)
T 2jjm_A 18 IGITCYPSVGGSGVVGTELGKQLAER-GHEIHFITSGLPFRL--NKVYPNIYFHEVTVNQYSV--FQYPPYDLALASKM- 91 (394)
T ss_dssp EEEECCC--CHHHHHHHHHHHHHHHT-TCEEEEECSSCC------CCCTTEEEECCCCC------CCSCCHHHHHHHHH-
T ss_pred eehhcCCCCCCHHHHHHHHHHHHHhC-CCEEEEEeCCCCCcc--cccCCceEEEecccccccc--cccccccHHHHHHH-
Confidence 4444455667655554 456777776 999999997543211 1235678877766221111 11111111111111
Q ss_pred HHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhC--CCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
..++ +..+||+||++.+. +....+.++++.. ++|+|++.|+...... +... .++.+++..
T Consensus 92 -------~~~l-~~~~~Dvv~~~~~~--~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~----~~~~~~~~~ 153 (394)
T 2jjm_A 92 -------AEVA-QRENLDILHVHYAI--PHAICAYLAKQMIGERIKIVTTLHGTDITVL----GSDP----SLNNLIRFG 153 (394)
T ss_dssp -------HHHH-HHHTCSEEEECSST--THHHHHHHHHHHTTTCSEEEEECCHHHHHTT----TTCT----TTHHHHHHH
T ss_pred -------HHHH-HHcCCCEEEEcchh--HHHHHHHHHHHhhcCCCCEEEEEecCccccc----CCCH----HHHHHHHHH
Confidence 1112 23789999999753 2333344455443 5999999999743111 1111 123456677
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCC--ceEEeeCCC-CCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccc
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGI--KATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~--~~~vi~n~~-~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
.+.+|.++++|+.+++.+.+.++. ++.+++|+. .+.|.+.. +..++.+++
T Consensus 154 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~---~~~~~~~~~------------------------ 206 (394)
T 2jjm_A 154 IEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRD---MTQLKKEYG------------------------ 206 (394)
T ss_dssp HHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCC---CHHHHHHTT------------------------
T ss_pred HhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcc---hHHHHHHcC------------------------
Confidence 788999999999999999887765 589999994 45565542 233444433
Q ss_pred hhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEE
Q 011979 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (473)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (473)
++++.+ .++|+|++.+.||++.+++|+..+.+ .++++|+
T Consensus 207 ------------~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~----------------------------~~~~~l~ 245 (394)
T 2jjm_A 207 ------------ISESEK-ILIHISNFRKVKRVQDVVQAFAKIVT----------------------------EVDAKLL 245 (394)
T ss_dssp ------------CC---C-EEEEECCCCGGGTHHHHHHHHHHHHH----------------------------SSCCEEE
T ss_pred ------------CCCCCe-EEEEeeccccccCHHHHHHHHHHHHh----------------------------hCCCEEE
Confidence 122233 89999999999999999999999977 2568999
Q ss_pred EEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc
Q 011979 321 ITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 399 (473)
Q Consensus 321 ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~ 399 (473)
|+|+|+..+.+++.++++++ ++|.|+|+ .+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.++.
T Consensus 246 i~G~g~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~adv~v~---ps~~e~~~~~~~EAma~G~PvI~~~~~~~ 319 (394)
T 2jjm_A 246 LVGDGPEFCTILQLVKNLHIEDRVLFLGK---QDNVAELLAMSDLMLL---LSEKESFGLVLLEAMACGVPCIGTRVGGI 319 (394)
T ss_dssp EECCCTTHHHHHHHHHTTTCGGGBCCCBS---CSCTHHHHHTCSEEEE---CCSCCSCCHHHHHHHHTTCCEEEECCTTS
T ss_pred EECCchHHHHHHHHHHHcCCCCeEEEeCc---hhhHHHHHHhCCEEEe---ccccCCCchHHHHHHhcCCCEEEecCCCh
Confidence 99999999999999999998 89999997 7999999999999999 67789999999999999999999999999
Q ss_pred ccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHhhc
Q 011979 400 EELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEVISQ 470 (473)
Q Consensus 400 ~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~ 470 (473)
.|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++.. +.++|+...++ +..++++++++
T Consensus 320 ~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~ 388 (394)
T 2jjm_A 320 PEVIQHGDTGYLCEVGDTTGVADQAIQLLKD----EELHRNMGERARESVYEQFRSEKIVSQ-YETIYYDVLRD 388 (394)
T ss_dssp TTTCCBTTTEEEECTTCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHTC--
T ss_pred HHHhhcCCceEEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhh
Confidence 99999999999997 799999999999995 899999999999987 78999887776 44555665543
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=4.5e-35 Score=299.44 Aligned_cols=357 Identities=14% Similarity=0.127 Sum_probs=248.8
Q ss_pred CCCCeEEEEEecC---CCCC-hhHHHHHHHHHhhCCCcEEEEecCCCCC-CcccccCCCEEEEEeecCCCCCCCCcchhH
Q 011979 2 GRRGRACVVVLGD---LGRS-PRMQYQALSLARQMSLEVDVVAYGGSKP-HAAILEHPSIHIHTMTQWPTIPRGLPKVLK 76 (473)
Q Consensus 2 ~~~~~~~i~~~~~---~g~s-~r~~~~a~~L~~~~g~eV~vi~~~~~~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 76 (473)
.+|++++++.... .||. .++...+..|.++ ||+|++++...... .+......+ +++.++.... .........
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 94 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVLAPASPHVKLPDYVVSGG-KAVPIPYNGS-VARLRFGPA 94 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEEESCCTTSCCCTTEEECC-CCC-------------CCHH
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCccccCCcccccCC-cEEeccccCC-cccccccHH
Confidence 4456666665321 2443 2344566777776 99999999765432 111111222 3333331000 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHH
Q 011979 77 PVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIY 156 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 156 (473)
....+. .++ +..+||+||++.+..... +.++++..++|+|+++|+... .......+.
T Consensus 95 ~~~~l~-----------~~l-~~~~~Dii~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~--------~~~~~~~~~ 151 (406)
T 2gek_A 95 THRKVK-----------KWI-AEGDFDVLHIHEPNAPSL---SMLALQAAEGPIVATFHTSTT--------KSLTLSVFQ 151 (406)
T ss_dssp HHHHHH-----------HHH-HHHCCSEEEEECCCSSSH---HHHHHHHEESSEEEEECCCCC--------SHHHHHHHH
T ss_pred HHHHHH-----------HHH-HhcCCCEEEECCccchHH---HHHHHHhcCCCEEEEEcCcch--------hhhhHHHHH
Confidence 011111 122 226899999998765443 334455567999999999731 111122333
Q ss_pred HHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
++++ ...+.+|.++++|+.+++.+.+.++.+ + +++|+.+ +.|.+....
T Consensus 152 ~~~~-~~~~~~d~ii~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~---------------------------- 201 (406)
T 2gek_A 152 GILR-PYHEKIIGRIAVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLL---------------------------- 201 (406)
T ss_dssp STTH-HHHTTCSEEEESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCC----------------------------
T ss_pred HHHH-HHHhhCCEEEECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchh----------------------------
Confidence 3444 667889999999999999998877766 6 8888743 333222100
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeec-cCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
...+.+++ .++|+|++ .+.||++.+++|+..+.+ .
T Consensus 202 ----------------~~~~~~~~-~i~~~G~~~~~~Kg~~~li~a~~~l~~---------------------------~ 237 (406)
T 2gek_A 202 ----------------DGYPREGR-TVLFLGRYDEPRKGMAVLLAALPKLVA---------------------------R 237 (406)
T ss_dssp ----------------TTCSCSSC-EEEEESCTTSGGGCHHHHHHHHHHHHT---------------------------T
T ss_pred ----------------hhccCCCe-EEEEEeeeCccccCHHHHHHHHHHHHH---------------------------H
Confidence 01222333 89999999 999999999999999876 3
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI 392 (473)
.|+++|+|+|+|+. +.+++.++++ .++|.|+|. ++.+++..+|+.||++|+ +| ..|++|++++|||+||+|||
T Consensus 238 ~~~~~l~i~G~~~~-~~l~~~~~~~-~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~~e~~~~~~~Ea~a~G~PvI 311 (406)
T 2gek_A 238 FPDVEILIVGRGDE-DELREQAGDL-AGHLRFLGQ-VDDATKASAMRSADVYCA---PHLGGESFGIVLVEAMAAGTAVV 311 (406)
T ss_dssp STTCEEEEESCSCH-HHHHHHTGGG-GGGEEECCS-CCHHHHHHHHHHSSEEEE---CCCSCCSSCHHHHHHHHHTCEEE
T ss_pred CCCeEEEEEcCCcH-HHHHHHHHhc-cCcEEEEec-CCHHHHHHHHHHCCEEEe---cCCCCCCCchHHHHHHHcCCCEE
Confidence 68999999999987 8888888876 479999998 999999999999999999 56 48999999999999999999
Q ss_pred EeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011979 393 AVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 393 ~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
+++.++..|++.++.+|++++ |+++++++|.+++++ ++.++++++++++..+.++|+...++ +..++++++.
T Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~ 385 (406)
T 2gek_A 312 ASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED----DQLRAGYVARASERVHRYDWSVVSAQ-IMRVYETVSG 385 (406)
T ss_dssp ECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHGGGGBHHHHHHH-HHHHHHHHCC
T ss_pred EecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHh
Confidence 999999999999999999994 799999999999995 89999999999998888999877766 4445555543
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=8.2e-36 Score=301.59 Aligned_cols=346 Identities=13% Similarity=0.069 Sum_probs=242.7
Q ss_pred CCeEEEEEe-cCCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHH
Q 011979 4 RGRACVVVL-GDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (473)
Q Consensus 4 ~~~~~i~~~-~~~g~s~r-~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (473)
||++++... ...||..+ +...+..|+++ ||+|+|++...... ..++++++.++. . ..........
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~-----~~~~~~v~~~~~--~---~~~~~~~~~~-- 67 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAAR-GHHVRVYTQSWEGD-----CPKAFELIQVPV--K---SHTNHGRNAE-- 67 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHT-TCCEEEEESEECSC-----CCTTCEEEECCC--C---CSSHHHHHHH--
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhC-CCeEEEEecCCCCC-----CCCCcEEEEEcc--C---cccchhhHHH--
Confidence 344443322 23555444 44566778886 99999999653221 124788888872 1 1111111111
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHH
Q 011979 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (473)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (473)
.... +..++ +..+||+||++++..... +.+......++.+++.|+... ......+.+.++++
T Consensus 68 --~~~~----l~~~i-~~~~~Dvv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 129 (374)
T 2iw1_A 68 --YYAW----VQNHL-KEHPADRVVGFNKMPGLD---VYFAADVCYAEKVAQEKGFLY--------RLTSRYRHYAAFER 129 (374)
T ss_dssp --HHHH----HHHHH-HHSCCSEEEESSCCTTCS---EEECCSCCHHHHHHHHCCHHH--------HTSHHHHHHHHHHH
T ss_pred --HHHH----HHHHH-hccCCCEEEEecCCCCce---eeeccccccceeeeecccchh--------hhcHHHHHHHHHHH
Confidence 1111 11222 237899999987432110 001111122233333444321 11112234456666
Q ss_pred HHhh--cCCEEEEcCHHHHHHHHHHhCCc---eEEeeCCCC-CCcccCC-hhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 162 YYGK--MANGCLCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 162 ~~~~--~ad~vi~vS~~~~~~l~~~~g~~---~~vi~n~~~-~~f~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
...+ .+|.++++|+.+++.+.+.+|.+ +.+++|+.+ +.|.+.. ...+..++.+++
T Consensus 130 ~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~------------------ 191 (374)
T 2iw1_A 130 ATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNG------------------ 191 (374)
T ss_dssp HHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTT------------------
T ss_pred HHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhC------------------
Confidence 6654 69999999999999999888763 889999944 5565542 234555666654
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+++++ .+++|+|++.+.||++.+++|+..+.++ ..
T Consensus 192 ------------------~~~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~~--------------------------~~ 226 (374)
T 2iw1_A 192 ------------------IKEQQ-NLLLQVGSDFGRKGVDRSIEALASLPES--------------------------LR 226 (374)
T ss_dssp ------------------CCTTC-EEEEEECSCTTTTTHHHHHHHHHTSCHH--------------------------HH
T ss_pred ------------------CCCCC-eEEEEeccchhhcCHHHHHHHHHHhHhc--------------------------cC
Confidence 22223 3899999999999999999999998652 13
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
++++|+|+|+|+. +.++++++++++ ++|.|+|+ .+++..+|+.||++|+ ||..|++|++++|||+||+|||+
T Consensus 227 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---ps~~e~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 227 HNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSG---RNDVSELMAAADLLLH---PAYQEAAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp HTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESC---CSCHHHHHHHCSEEEE---CCSCCSSCHHHHHHHHHTCCEEE
T ss_pred CceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCC---cccHHHHHHhcCEEEe---ccccCCcccHHHHHHHCCCCEEE
Confidence 6899999999874 779999999998 89999997 7899999999999999 67789999999999999999999
Q ss_pred eccCccccceecCCceEEeC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHH
Q 011979 394 VSYSCIEELVKVDKNGLLFS---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 454 (473)
Q Consensus 394 ~~~~~~~e~i~~~~~G~~~~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 454 (473)
++.++..+++.++.+|++++ |+++++++|.+++++ ++.++++++++++...+++|..
T Consensus 300 ~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 359 (374)
T 2iw1_A 300 TAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQ----SPLRMAWAENARHYADTQDLYS 359 (374)
T ss_dssp ETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHSCCSC
T ss_pred ecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999985 799999999999995 8999999999999886666654
No 8
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.6e-35 Score=305.52 Aligned_cols=362 Identities=14% Similarity=0.147 Sum_probs=244.1
Q ss_pred CCCCCeEEEEEecCCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHH
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVL 79 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~-~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 79 (473)
|.+||++++......||..+... ++..|.+. ||+|++++............ ++.. .+. ......... ....
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~-G~~v~v~~~~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~--~~~~ 109 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSI-GIEARWFVIEGPTEFFNVTK--TFHN-ALQ--GNESLKLTE--EMKE 109 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHT-TCEEEEEECCCCHHHHHHHH--HHHH-HHT--TCCSCCCCH--HHHH
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCeEEEEEccCCcchhhhhc--ccce-eec--ccccccccH--HHHH
Confidence 55566555554444566666654 56777776 99999998654321100000 0000 000 000011111 1111
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHH
Q 011979 80 LLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWI 159 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 159 (473)
......+ .+...+ +..+||+||+|++...... .+++ +++|+|++.|+... ... ....+++
T Consensus 110 ~~~~~~~----~~~~~l-~~~~~Dvv~~~~~~~~~~~---~~~~--~~~p~v~~~h~~~~-------~~~---~~~~~~~ 169 (416)
T 2x6q_A 110 LYLNVNR----ENSKFI-DLSSFDYVLVHDPQPAALI---EFYE--KKSPWLWRCHIDLS-------SPN---REFWEFL 169 (416)
T ss_dssp HHHHHHH----HHHHSS-CGGGSSEEEEESSTTGGGG---GGSC--CCSCEEEECCSCCS-------SCC---HHHHHHH
T ss_pred HHHHHHH----HHHHHH-hhcCCCEEEEeccchhhHH---HHHH--hcCCEEEEEccccC-------Ccc---HHHHHHH
Confidence 1111111 111222 3368999999996543221 1222 34899999998731 111 1223344
Q ss_pred HHHHhhcCCEEE-EcCHHHHHHHHHHhCCceEEeeCCCC-CCccc--CChhHHHHHHHhhhhhccCCCCcccccCCCcCC
Q 011979 160 EKYYGKMANGCL-CVTQAMQHELAQNWGIKATVLYDQPP-EFFHP--TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEG 235 (473)
Q Consensus 160 e~~~~~~ad~vi-~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 235 (473)
++.+. .+|.++ ++|+..++.+. ..++.+++|+.+ ..|.+ .+.+.+..++.+++
T Consensus 170 ~~~~~-~~~~~i~~~s~~~~~~~~---~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~------------------- 226 (416)
T 2x6q_A 170 RRFVE-KYDRYIFHLPEYVQPELD---RNKAVIMPPSIDPLSEKNVELKQTEILRILERFD------------------- 226 (416)
T ss_dssp HHHHT-TSSEEEESSGGGSCTTSC---TTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTT-------------------
T ss_pred HHHHH-hCCEEEEechHHHHhhCC---ccceEEeCCCCChhhhcccccChhhHHHHHHHhC-------------------
Confidence 55544 456554 67766554221 145889999943 44433 23445566666654
Q ss_pred CCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCC
Q 011979 236 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 315 (473)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (473)
++++++ +++|+|++.+.||++.+++|+..+.++ .|
T Consensus 227 -----------------~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~~ 261 (416)
T 2x6q_A 227 -----------------VDPEKP-IITQVSRFDPWKGIFDVIEIYRKVKEK---------------------------IP 261 (416)
T ss_dssp -----------------CCTTSC-EEEEECCCCTTSCHHHHHHHHHHHHHH---------------------------CT
T ss_pred -----------------CCCCCc-EEEEEeccccccCHHHHHHHHHHHHHh---------------------------CC
Confidence 233344 899999999999999999999999873 68
Q ss_pred CEEEEEEcCCCC-----hHHHHHHHHHcCC-CcEEEecC--CCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhc
Q 011979 316 RLLFIITGKGPD-----KESYEEKIRRLRL-KRVAFRTM--WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGC 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-----~~~l~~~~~~~~l-~~V~~~g~--~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~ 387 (473)
+++|+|+|+|+. .+.++++++++++ ++|.|+|+ .++.+++..+|+.||++|+ ||..|+||++++|||||
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~---ps~~E~~~~~~lEAma~ 338 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQ---MSIREGFGLTVTEAMWK 338 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEE---CCSSCSSCHHHHHHHHT
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEE---CCCcCCCccHHHHHHHc
Confidence 999999999975 4668889999998 79999995 1346799999999999999 68889999999999999
Q ss_pred CCcEEEeccCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHH
Q 011979 388 GLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITE 466 (473)
Q Consensus 388 G~PvI~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~ 466 (473)
|+|||+++.++..|++.++.+|++++|+++++++|.+++++ ++.+++|++++++.. +.|+|+...+++. .++++
T Consensus 339 G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~ 413 (416)
T 2x6q_A 339 GKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKH----PEVSKEMGAKAKERVRKNFIITKHMERYL-DILNS 413 (416)
T ss_dssp TCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHHT
T ss_pred CCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999995 899999999999877 4799987776643 34443
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=3.2e-34 Score=301.79 Aligned_cols=289 Identities=15% Similarity=0.134 Sum_probs=218.0
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHH-hhCCCeEEEEecCchhhhh-hh-hc---C-CCchH------HHHHHHHHHHHhhc
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLL-SL-SL---G-RRSHF------VSIYRWIEKYYGKM 166 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~-~~-~~---~-~~~~~------~~~~~~~e~~~~~~ 166 (473)
.+||+||+|++.. ..++.+++ +..++|+|+++|+.++... .. .. + ....+ .....++++...+.
T Consensus 128 ~~~Divh~~~~~~---~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 2qzs_A 128 WRPDVVHAHDWHA---GLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYY 204 (485)
T ss_dssp CCCSEEEEETGGG---TTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHH
T ss_pred CCCCEEEeeccch---hHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHh
Confidence 5899999998432 22344444 5678999999999742110 00 00 0 00000 00011456677788
Q ss_pred CCEEEEcCHHHHHHHHHH-hC-------------CceEEeeCCC-CCCcccCCh----------------hHHHHHHHhh
Q 011979 167 ANGCLCVTQAMQHELAQN-WG-------------IKATVLYDQP-PEFFHPTSL----------------EEKHELFCRL 215 (473)
Q Consensus 167 ad~vi~vS~~~~~~l~~~-~g-------------~~~~vi~n~~-~~~f~~~~~----------------~~~~~l~~~l 215 (473)
+|.++++|+.+++.+.+. +| .++.+++|+. .+.|.+... ..+..++.++
T Consensus 205 ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAM 284 (485)
T ss_dssp CSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHc
Confidence 999999999999988754 44 5689999994 466665421 1245566665
Q ss_pred hhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC--CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhcc
Q 011979 216 NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP--NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 293 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~ 293 (473)
+ +++ +.+ +++|+|++.+.||++.+++|+..+.+
T Consensus 285 ~------------------------------------~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~-------- 319 (485)
T 2qzs_A 285 G------------------------------------LKVDDKVP-LFAVVSRLTSQKGLDLVLEALPGLLE-------- 319 (485)
T ss_dssp T------------------------------------CCCCTTSC-EEEEEEEESGGGCHHHHHHHHHHHHH--------
T ss_pred C------------------------------------CCCCCCCe-EEEEeccCccccCHHHHHHHHHHHhh--------
Confidence 5 122 233 89999999999999999999999876
Q ss_pred CCCchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHHHHHHHcCCCcEE-EecCCCCcccHHHHHhcCcEEEEecc
Q 011979 294 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLGSADLGVCLHT 370 (473)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~V~-~~g~~v~~~~i~~~l~~adi~v~~~~ 370 (473)
++++|+|+|+|+ ..+.+++++++++ ++|. |.|. +.+++..+|+.||++|+
T Consensus 320 ---------------------~~~~l~ivG~g~~~~~~~l~~~~~~~~-~~v~~~~g~--~~~~~~~~~~~adv~v~--- 372 (485)
T 2qzs_A 320 ---------------------QGGQLALLGAGDPVLQEGFLAAAAEYP-GQVGVQIGY--HEAFSHRIMGGADVILV--- 372 (485)
T ss_dssp ---------------------TTCEEEEEEEECHHHHHHHHHHHHHST-TTEEEEESC--CHHHHHHHHHHCSEEEE---
T ss_pred ---------------------CCcEEEEEeCCchHHHHHHHHHHHhCC-CcEEEeCCC--CHHHHHHHHHhCCEEEE---
Confidence 479999999996 4678888898887 7897 5654 67777999999999999
Q ss_pred CCCCCCCcHHHHHHHhcCCcEEEeccCccccceecC---------CceEEeC--CHHHHHHHHHHHHh--CCCCCHHHHH
Q 011979 371 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLMLFK--GFPDDSDVLK 437 (473)
Q Consensus 371 ~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~---------~~G~~~~--~~~~la~~i~~l~~--~~~~~~~~~~ 437 (473)
||..|+||++++||||||+|||+++.+|+.|++.++ .+|++++ |+++|+++|.++++ . |++.++
T Consensus 373 pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~---~~~~~~ 449 (485)
T 2qzs_A 373 PSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWS---RPSLWR 449 (485)
T ss_dssp CCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred CCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcC---CHHHHH
Confidence 688899999999999999999999999999999988 8999996 79999999999993 2 489999
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011979 438 KLRNGTLEMGLSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 438 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
+|++++++ +.|+|+...+++ ..++++++.
T Consensus 450 ~~~~~~~~--~~fs~~~~~~~~-~~ly~~~~~ 478 (485)
T 2qzs_A 450 FVQRQAMA--MDFSWQVAAKSY-RELYYRLKL 478 (485)
T ss_dssp HHHHHHHH--CCCCHHHHHHHH-HHHHHHHC-
T ss_pred HHHHHHHh--hcCCHHHHHHHH-HHHHHHhhh
Confidence 99999986 589999887774 456665544
No 10
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.1e-34 Score=305.35 Aligned_cols=290 Identities=13% Similarity=0.117 Sum_probs=218.9
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhh--CCCeEEEEecCchhhhh-h---h-hcC-CCchH----HHH--HHHHHHHHh
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLL-S---L-SLG-RRSHF----VSI--YRWIEKYYG 164 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~-~---~-~~~-~~~~~----~~~--~~~~e~~~~ 164 (473)
..+||+||+|++ ....++.++++. .++|+|+++|+.++... . . ..+ ....+ ... ...+++...
T Consensus 128 ~~~~DiIh~~~~---~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 1rzu_A 128 GWRPDMVHAHDW---QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGL 204 (485)
T ss_dssp SCCCSEEEEEHH---HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHH
T ss_pred CCCCCEEEeccc---chhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHH
Confidence 368999999983 333234455554 78999999999742110 0 0 000 00000 000 013566777
Q ss_pred hcCCEEEEcCHHHHHHHHHH-hC-----------CceEEeeCC-CCCCcccCChh----------------HHHHHHHhh
Q 011979 165 KMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSLE----------------EKHELFCRL 215 (473)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~-~g-----------~~~~vi~n~-~~~~f~~~~~~----------------~~~~l~~~l 215 (473)
+.+|.++++|+.+++.+.+. +| .++.+++|+ +.+.|.+.... .+..++.++
T Consensus 205 ~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 1rzu_A 205 QTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHF 284 (485)
T ss_dssp HHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHH
T ss_pred hhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhc
Confidence 88999999999999988764 33 348999999 44666654321 245566665
Q ss_pred hhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC-CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccC
Q 011979 216 NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN-RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 294 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~ 294 (473)
+ ++++ .+ +++|+|++.+.||++.+++|+..+.+
T Consensus 285 ~------------------------------------~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~--------- 318 (485)
T 1rzu_A 285 R------------------------------------IDDDGSP-LFCVISRLTWQKGIDLMAEAVDEIVS--------- 318 (485)
T ss_dssp T------------------------------------CCCSSSC-EEEEESCBSTTTTHHHHHTTHHHHHH---------
T ss_pred C------------------------------------CCCCCCe-EEEEEccCccccCHHHHHHHHHHHHh---------
Confidence 5 2332 33 89999999999999999999999876
Q ss_pred CCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHHHHHcCCCcEE-EecCCCCcccHHHHHhcCcEEEEeccC
Q 011979 295 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLGSADLGVCLHTS 371 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~-~~g~~v~~~~i~~~l~~adi~v~~~~~ 371 (473)
++++|+|+|+|+. .+.+++++++++ ++|. |.|. +.+++..+|+.||++|+ |
T Consensus 319 --------------------~~~~l~ivG~g~~~~~~~l~~~~~~~~-~~v~~~~g~--~~~~~~~~~~~adv~v~---p 372 (485)
T 1rzu_A 319 --------------------LGGRLVVLGAGDVALEGALLAAASRHH-GRVGVAIGY--NEPLSHLMQAGCDAIII---P 372 (485)
T ss_dssp --------------------TTCEEEEEECBCHHHHHHHHHHHHHTT-TTEEEEESC--CHHHHHHHHHHCSEEEE---C
T ss_pred --------------------cCceEEEEeCCchHHHHHHHHHHHhCC-CcEEEecCC--CHHHHHHHHhcCCEEEE---C
Confidence 4899999999973 678888888886 7898 5554 67777999999999999 6
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEeccCccccceecC---------CceEEeC--CHHHHHHHHHHHHh--CCCCCHHHHHH
Q 011979 372 SSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLMLFK--GFPDDSDVLKK 438 (473)
Q Consensus 372 s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~---------~~G~~~~--~~~~la~~i~~l~~--~~~~~~~~~~~ 438 (473)
|..|+||++++||||||+|||+++.+|+.|++.++ .+|++++ |+++|+++|.++++ . |++.+++
T Consensus 373 S~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~---~~~~~~~ 449 (485)
T 1rzu_A 373 SRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYH---DPKLWTQ 449 (485)
T ss_dssp CSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHT---CHHHHHH
T ss_pred cccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhC---CHHHHHH
Confidence 88899999999999999999999999999999988 8999996 79999999999993 2 4899999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011979 439 LRNGTLEMGLSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 439 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
|++++++ +.|+|+...+++ ..+++++.+
T Consensus 450 ~~~~~~~--~~fs~~~~~~~~-~~~y~~~~~ 477 (485)
T 1rzu_A 450 MQKLGMK--SDVSWEKSAGLY-AALYSQLIS 477 (485)
T ss_dssp HHHHHHT--CCCBHHHHHHHH-HHHHHHHTC
T ss_pred HHHHHHH--HhCChHHHHHHH-HHHHHHhhC
Confidence 9999986 589999887774 456666554
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=8.1e-34 Score=316.30 Aligned_cols=371 Identities=11% Similarity=0.105 Sum_probs=249.5
Q ss_pred HHHHhhCCCcEE----EEecCCCCC--------CcccccCCCEEEEEeecCCCC---CCCCcc--hhHHHHHHH-HHHHH
Q 011979 26 LSLARQMSLEVD----VVAYGGSKP--------HAAILEHPSIHIHTMTQWPTI---PRGLPK--VLKPVLLLL-KPLIQ 87 (473)
Q Consensus 26 ~~L~~~~g~eV~----vi~~~~~~~--------~~~~~~~~~i~i~~~~~~~~~---~~~~~~--~~~~~~~~~-~~~~~ 87 (473)
..|+++ ||+|+ |+|.....+ .+.+...+|++++++|..+.. ...+++ +...+..+. ..+..
T Consensus 321 ~~L~~~-G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~ 399 (816)
T 3s28_A 321 QRIKQQ-GLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVE 399 (816)
T ss_dssp HHHHHT-TCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHH
T ss_pred HHHHHC-CCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHH
Confidence 344555 99886 998553221 111222369999999843321 111111 222222111 11111
Q ss_pred HHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHH-----HHHHHH
Q 011979 88 FFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIY-----RWIEKY 162 (473)
Q Consensus 88 ~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~-----~~~e~~ 162 (473)
.+.....+||+||+|. ..+..++.++++..++|+|++.|+++.................+ ...|+.
T Consensus 400 ------il~~~~~~PDVIHsH~---~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~ 470 (816)
T 3s28_A 400 ------LSKELNGKPDLIIGNY---SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIF 470 (816)
T ss_dssp ------HHHHCSSCCSEEEEEH---HHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHH
T ss_pred ------HHHhcCCCCeEEEeCC---chHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 1111124799999997 55565678888888999999999985322210000001111111 124777
Q ss_pred HhhcCCEEEEcCHHHHHHHHH---HhC---------------------CceEEeeCC-CCCCcccCChhHH--HHHHHhh
Q 011979 163 YGKMANGCLCVTQAMQHELAQ---NWG---------------------IKATVLYDQ-PPEFFHPTSLEEK--HELFCRL 215 (473)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~---~~g---------------------~~~~vi~n~-~~~~f~~~~~~~~--~~l~~~l 215 (473)
..+.||.|+|+|+..++.+.+ .|+ .++.+|+|| +.+.|.|...... ..+...+
T Consensus 471 ~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i 550 (816)
T 3s28_A 471 AMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEI 550 (816)
T ss_dssp HHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHH
T ss_pred HHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccc
Confidence 889999999999998874211 111 168999999 4477766532111 0000000
Q ss_pred hhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCC
Q 011979 216 NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDD 295 (473)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~ 295 (473)
...+..+...... -....+++++ +++|+|++.+.||++.+++|+..+.++
T Consensus 551 ~~~l~~p~~~r~~--------------------lg~l~~~~~~-vIl~vGRl~~~KGid~LIeA~~~L~~~--------- 600 (816)
T 3s28_A 551 EELLYSDVENKEH--------------------LCVLKDKKKP-ILFTMARLDRVKNLSGLVEWYGKNTRL--------- 600 (816)
T ss_dssp HHHHHCSCCBTTE--------------------ESCBSCTTSC-EEEEECCCCTTTTHHHHHHHHHHCHHH---------
T ss_pred cccccchhhHHHH--------------------hcccCCCCCe-EEEEEccCcccCCHHHHHHHHHHHHhh---------
Confidence 0000000000000 0000133444 999999999999999999999999773
Q ss_pred CchhhHHHhhhccCccccCCCEEEEEEcCCC-----------ChHHHHHHHHHcCC-CcEEEecC---CCCcccHHHHHh
Q 011979 296 STNEEVFLKEISDGKQYLYPRLLFIITGKGP-----------DKESYEEKIRRLRL-KRVAFRTM---WLSAEDYPLLLG 360 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~-----------~~~~l~~~~~~~~l-~~V~~~g~---~v~~~~i~~~l~ 360 (473)
.++++|+|+|+|+ ..+.++++++++++ ++|.|+|. +++.+++..+|.
T Consensus 601 ------------------~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~ 662 (816)
T 3s28_A 601 ------------------RELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYIC 662 (816)
T ss_dssp ------------------HHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHH
Confidence 5789999999998 45788999999999 89999995 144588999998
Q ss_pred -cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHH----hCCCCCH
Q 011979 361 -SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLF----KGFPDDS 433 (473)
Q Consensus 361 -~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~----~~~~~~~ 433 (473)
.+|++|+ ||..|+||++++||||||+|||+|+.+|+.|++.++.+|++++ |+++++++|.+++ . |+
T Consensus 663 ~aaDvfV~---PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~----d~ 735 (816)
T 3s28_A 663 DTKGAFVQ---PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKE----DP 735 (816)
T ss_dssp HTTCEEEE---CCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHH----CT
T ss_pred hcCeEEEE---CCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhcc----CH
Confidence 6899999 7888999999999999999999999999999999999999997 7999999998776 6 48
Q ss_pred HHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011979 434 DVLKKLRNGTLEMG-LSARWATEWEEHAK 461 (473)
Q Consensus 434 ~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 461 (473)
+.+++|++++++.+ +.|+|+...+++.+
T Consensus 736 ~~~~~m~~~ar~~a~~~fSwe~~a~~ll~ 764 (816)
T 3s28_A 736 SHWDEISKGGLQRIEEKYTWQIYSQRLLT 764 (816)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999988 78999887777543
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=7.5e-33 Score=278.08 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=219.2
Q ss_pred CCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 011979 15 LGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (473)
Q Consensus 15 ~g~s~r~~-~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
.||..+.. ..+..|.++ ||+|++++....... .+++++++.+ .. ..+.+.+
T Consensus 29 ~gG~~~~~~~l~~~L~~~-G~~v~v~~~~~~~~~-----~~~~~~~~~~----------~~----~~l~~~l-------- 80 (342)
T 2iuy_A 29 YGGIQWVVANLMDGLLEL-GHEVFLLGAPGSPAG-----RPGLTVVPAG----------EP----EEIERWL-------- 80 (342)
T ss_dssp SCHHHHHHHHHHHHHHHT-TCEEEEESCTTSCCC-----STTEEECSCC----------SH----HHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHc-CCeEEEEecCCCCCC-----CCcceeccCC----------cH----HHHHHHH--------
Confidence 45555544 456777776 999999997654321 2355543221 00 1122222
Q ss_pred HHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEc
Q 011979 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (473)
Q Consensus 94 ~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (473)
+..+||+||++.+..... +++..++| |+++|+... .. ..+|.++++
T Consensus 81 ----~~~~~Dvi~~~~~~~~~~------~~~~~~~p-v~~~h~~~~-------~~----------------~~~d~ii~~ 126 (342)
T 2iuy_A 81 ----RTADVDVVHDHSGGVIGP------AGLPPGTA-FISSHHFTT-------RP----------------VNPVGCTYS 126 (342)
T ss_dssp ----HHCCCSEEEECSSSSSCS------TTCCTTCE-EEEEECSSS-------BC----------------SCCTTEEES
T ss_pred ----HhcCCCEEEECCchhhHH------HHhhcCCC-EEEecCCCC-------Cc----------------ccceEEEEc
Confidence 227899999998653221 14566899 999999842 11 119999999
Q ss_pred CHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccc
Q 011979 174 TQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (473)
Q Consensus 174 S~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (473)
|+.+++.+.+ +.++.+++|+.+ +.|.+...
T Consensus 127 S~~~~~~~~~--~~~~~vi~ngvd~~~~~~~~~----------------------------------------------- 157 (342)
T 2iuy_A 127 SRAQRAHCGG--GDDAPVIPIPVDPARYRSAAD----------------------------------------------- 157 (342)
T ss_dssp CHHHHHHTTC--CTTSCBCCCCBCGGGSCCSTT-----------------------------------------------
T ss_pred CHHHHHHHhc--CCceEEEcCCCChhhcCcccc-----------------------------------------------
Confidence 9999988876 566889999843 44433210
Q ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 253 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
..++++ .++|+|++.+.||++.+++|++.+ +++|+|+|+|+..+.++
T Consensus 158 ~~~~~~-~i~~vG~~~~~Kg~~~li~a~~~~--------------------------------~~~l~i~G~g~~~~~l~ 204 (342)
T 2iuy_A 158 QVAKED-FLLFMGRVSPHKGALEAAAFAHAC--------------------------------GRRLVLAGPAWEPEYFD 204 (342)
T ss_dssp CCCCCS-CEEEESCCCGGGTHHHHHHHHHHH--------------------------------TCCEEEESCCCCHHHHH
T ss_pred cCCCCC-EEEEEeccccccCHHHHHHHHHhc--------------------------------CcEEEEEeCcccHHHHH
Confidence 011233 799999999999999999999874 48999999999999999
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCC----------CCCCcHHHHHHHhcCCcEEEeccCccccc
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS----------GLDLPMKVVDMFGCGLPVCAVSYSCIEEL 402 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~----------~e~~p~kv~Eama~G~PvI~~~~~~~~e~ 402 (473)
+++++++ ++|.|+|. ++.+++..+|+.||++|+ ||. .|+||++++|||+||+|||+++.++..|+
T Consensus 205 ~~~~~~~-~~v~~~g~-~~~~~l~~~~~~adv~v~---ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~ 279 (342)
T 2iuy_A 205 EITRRYG-STVEPIGE-VGGERRLDLLASAHAVLA---MSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEI 279 (342)
T ss_dssp HHHHHHT-TTEEECCC-CCHHHHHHHHHHCSEEEE---CCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHH
T ss_pred HHHHHhC-CCEEEecc-CCHHHHHHHHHhCCEEEE---CCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHH
Confidence 9999988 89999998 999999999999999999 565 79999999999999999999999999999
Q ss_pred eec--CCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHhh
Q 011979 403 VKV--DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 403 i~~--~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~ 469 (473)
+.+ +.+|++++ |+++++++|.++++ ++++++.. +.++|+...+++ ..+++++++
T Consensus 280 ~~~~~~~~g~~~~~d~~~l~~~i~~l~~------------~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~ 337 (342)
T 2iuy_A 280 VPSVGEVVGYGTDFAPDEARRTLAGLPA------------SDEVRRAAVRLWGHVTIAERY-VEQYRRLLA 337 (342)
T ss_dssp GGGGEEECCSSSCCCHHHHHHHHHTSCC------------HHHHHHHHHHHHBHHHHHHHH-HHHHHHHHT
T ss_pred hcccCCCceEEcCCCHHHHHHHHHHHHH------------HHHHHHHHHHhcCHHHHHHHH-HHHHHHHHc
Confidence 999 89999998 99999999998865 33444433 478998777664 445555543
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=7.5e-32 Score=277.41 Aligned_cols=269 Identities=13% Similarity=0.188 Sum_probs=209.8
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCC----CeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCC--EEEEc
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR----SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN--GCLCV 173 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad--~vi~v 173 (473)
.+||+||++++ ... .+.++....+ .+++..+|.... ..... .+.+.+.+| .++++
T Consensus 80 ~~~Div~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~ii~~ 140 (413)
T 3oy2_A 80 HKPDIVMIYND---PIV-IGNYLLAMGKCSHRTKIVLYVDLVSK-------NIREN--------LWWIFSHPKVVGVMAM 140 (413)
T ss_dssp HCCSEEEEEEC---HHH-HHHHHHHGGGCCSCCEEEEEECCCSB-------SCCGG--------GGGGGGCTTEEEEEES
T ss_pred cCCCEEEEcch---HHH-HHHHHHHhccCCCCCceeeeccccch-------hhHHH--------HHHHHhccCCceEEEc
Confidence 68999999963 222 2334444443 355666776521 11111 245667888 99999
Q ss_pred CHHHHHHHHHHhCC--ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccc
Q 011979 174 TQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID 250 (473)
Q Consensus 174 S~~~~~~l~~~~g~--~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (473)
|+.+++.+.+ +|. ++.+++|+.+ +.| ...+.+++
T Consensus 141 S~~~~~~~~~-~~~~~~~~vi~ngvd~~~~--------~~~~~~~~---------------------------------- 177 (413)
T 3oy2_A 141 SKCWISDICN-YGCKVPINIVSHFVDTKTI--------YDARKLVG---------------------------------- 177 (413)
T ss_dssp STHHHHHHHH-TTCCSCEEECCCCCCCCCC--------TTHHHHTT----------------------------------
T ss_pred CHHHHHHHHH-cCCCCceEEeCCCCCHHHH--------HHHHHhcC----------------------------------
Confidence 9999999988 664 4899999944 444 11222222
Q ss_pred cccCC-CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-
Q 011979 251 VFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK- 328 (473)
Q Consensus 251 ~~~~~-~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~- 328 (473)
+++ +....++|+|++.+.||++.+++|+..+.++ .|+++|+|+|+|+..
T Consensus 178 --~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~~ 228 (413)
T 3oy2_A 178 --LSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISK---------------------------YPDAKVRFLCNSHHES 228 (413)
T ss_dssp --CGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHH---------------------------CTTCCEEEEEECCTTC
T ss_pred --CCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHh---------------------------CCCcEEEEEeCCcccc
Confidence 111 1234899999999999999999999998773 789999999999865
Q ss_pred -----HHHHHHHHHcCC-Cc-------EEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 329 -----ESYEEKIRRLRL-KR-------VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 329 -----~~l~~~~~~~~l-~~-------V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
+.++++++++++ ++ |.+.|. ++.+++..+|+.||++|+ ||..|+||++++||||||+|||+++
T Consensus 229 ~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~-~~~~~~~~~~~~adv~v~---pS~~E~~~~~~lEAma~G~PvI~s~ 304 (413)
T 3oy2_A 229 KFDLHSIALRELVASGVDNVFTHLNKIMINRTV-LTDERVDMMYNACDVIVN---CSSGEGFGLCSAEGAVLGKPLIISA 304 (413)
T ss_dssp SCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSC-CCHHHHHHHHHHCSEEEE---CCSCCSSCHHHHHHHTTTCCEEEEC
T ss_pred hhhHHHHHHHHHHHcCcccccccccceeeccCc-CCHHHHHHHHHhCCEEEe---CCCcCCCCcHHHHHHHcCCCEEEcC
Confidence 889999999999 45 777776 999999999999999999 7889999999999999999999999
Q ss_pred cCccccceecCCc---------------eE--EeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHH
Q 011979 396 YSCIEELVKVDKN---------------GL--LFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATE 455 (473)
Q Consensus 396 ~~~~~e~i~~~~~---------------G~--~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~ 455 (473)
.++..|++.++.+ |+ +++ |+++++++| +++++ ++.+++|++++++.. +.|+|+..
T Consensus 305 ~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~----~~~~~~~~~~a~~~~~~~fs~~~~ 379 (413)
T 3oy2_A 305 VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD----EKNRKEYGKRVQDFVKTKPTWDDI 379 (413)
T ss_dssp CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS----HHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC----HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999998887 88 875 899999999 99985 999999999999986 67999887
Q ss_pred HHHHHHHHHHHHhh
Q 011979 456 WEEHAKPLITEVIS 469 (473)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (473)
.++ +..+++++..
T Consensus 380 ~~~-~~~~~~~~~~ 392 (413)
T 3oy2_A 380 SSD-IIDFFNSLLR 392 (413)
T ss_dssp HHH-HHHHHHHHTC
T ss_pred HHH-HHHHHHHHHh
Confidence 776 4455555543
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.98 E-value=3.9e-30 Score=276.19 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=206.4
Q ss_pred CCCEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEecCchhhh------hhhhcCCCchHHHH------------
Q 011979 101 SPDVFLVQNPPSVPTLVAVKWASS-------LRRSAFIVDWHNFGYTL------LSLSLGRRSHFVSI------------ 155 (473)
Q Consensus 101 ~~Dvi~~~~p~~~~~~~~~~~~~~-------~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~------------ 155 (473)
.+|++|+|+ +.+..+..+++. .+++|+|+|+|+..+.- ..............
T Consensus 153 ~ddIiH~hD---W~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (536)
T 3vue_A 153 EDVVFVCND---WHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEG 229 (536)
T ss_dssp SCEEEEEES---GGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCE
T ss_pred CCEEEEECc---chHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccc
Confidence 467888999 444333333332 24799999999874210 00000000000000
Q ss_pred -HHHHHHHHhhcCCEEEEcCHHHHHHHHHHhC-----------CceEEeeCC-CCCCcccCC-------------hh---
Q 011979 156 -YRWIEKYYGKMANGCLCVTQAMQHELAQNWG-----------IKATVLYDQ-PPEFFHPTS-------------LE--- 206 (473)
Q Consensus 156 -~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g-----------~~~~vi~n~-~~~~f~~~~-------------~~--- 206 (473)
.-.+++.....||.|+|||+.+++++.+.++ .++.+|+|| +.+.|.|.. .+
T Consensus 230 ~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~ 309 (536)
T 3vue_A 230 RKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309 (536)
T ss_dssp EEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHH
T ss_pred cchhHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhH
Confidence 0013556667899999999999999877553 248999999 446676632 11
Q ss_pred -HHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHH
Q 011979 207 -EKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDR 285 (473)
Q Consensus 207 -~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~ 285 (473)
.+..+...++. ...++.| +|+++||+.++||++.|++|+..+.+
T Consensus 310 ~~k~~l~~~~gl----------------------------------~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l~~ 354 (536)
T 3vue_A 310 LNKEALQAEAGL----------------------------------PVDRKIP-LIAFIGRLEEQKGPDVMAAAIPELMQ 354 (536)
T ss_dssp HHHHHHHHHTTS----------------------------------CCCTTSC-EEEEECCBSGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC----------------------------------CCCCCCc-EEEEEeeccccCChHHHHHHHHHhHh
Confidence 12333333331 2334566 99999999999999999999999855
Q ss_pred HHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCc
Q 011979 286 RVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD 363 (473)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~ad 363 (473)
++.+|+|+|.|+.. ..++.....++ .+|.+.+. .+.+++..+|+.||
T Consensus 355 -----------------------------~~~~l~l~G~G~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~~~~~aD 403 (536)
T 3vue_A 355 -----------------------------EDVQIVLLGTGKKKFEKLLKSMEEKYP-GKVRAVVK-FNAPLAHLIMAGAD 403 (536)
T ss_dssp -----------------------------SSCEEEEECCBCHHHHHHHHHHHHHST-TTEEEECS-CCHHHHHHHHHHCS
T ss_pred -----------------------------hCCeEEEEeccCchHHHHHHHHHhhcC-CceEEEEe-ccHHHHHHHHHhhh
Confidence 46788899988643 33444444443 68999988 89999999999999
Q ss_pred EEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceE----------EeC--CHHHHHHHHHHHHhCCCC
Q 011979 364 LGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL----------LFS--SSSELADQLLMLFKGFPD 431 (473)
Q Consensus 364 i~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~----------~~~--~~~~la~~i~~l~~~~~~ 431 (473)
++|+ ||..|+||++++|||+||+|||+|+.||+.|+|.++.+|+ +++ |+++|+++|.++++.+
T Consensus 404 ~~v~---PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~-- 478 (536)
T 3vue_A 404 VLAV---PSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV-- 478 (536)
T ss_dssp EEEE---CCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT--
T ss_pred eeec---ccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc--
Confidence 9999 7889999999999999999999999999999999999998 444 5899999999887642
Q ss_pred CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 011979 432 DSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 467 (473)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 467 (473)
++..+++|.+++.+ +.|+|++..+++. .|+.++
T Consensus 479 ~~~~~~~~~~~am~--~~fSW~~~A~~y~-~ly~~L 511 (536)
T 3vue_A 479 GTPAYEEMVRNCMN--QDLSWKGPAKNWE-NVLLGL 511 (536)
T ss_dssp TSHHHHHHHHHHHH--SCCSSHHHHHHHH-HHHHTT
T ss_pred CcHHHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHh
Confidence 13457788888755 4799999988854 455544
No 15
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=7.4e-29 Score=250.49 Aligned_cols=329 Identities=16% Similarity=0.126 Sum_probs=220.6
Q ss_pred CeEEEEEecCCCC-ChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHH
Q 011979 5 GRACVVVLGDLGR-SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (473)
Q Consensus 5 ~~~~i~~~~~~g~-s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (473)
++++++..+ .|+ ..+....+..|.++ ||+|++++..... ........|++++.++.... .... ....+.....
T Consensus 7 mkIl~~~~~-~gG~~~~~~~la~~L~~~-G~~V~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~-~~~~~~~~~~ 80 (364)
T 1f0k_A 7 KRLMVMAGG-TGGHVFPGLAVAHHLMAQ-GWQVRWLGTADRM-EADLVPKHGIEIDFIRISGL--RGKG-IKALIAAPLR 80 (364)
T ss_dssp CEEEEECCS-SHHHHHHHHHHHHHHHTT-TCEEEEEECTTST-HHHHGGGGTCEEEECCCCCC--TTCC-HHHHHTCHHH
T ss_pred cEEEEEeCC-CccchhHHHHHHHHHHHc-CCEEEEEecCCcc-hhhhccccCCceEEecCCcc--CcCc-cHHHHHHHHH
Confidence 566666533 332 22233566777776 9999999976432 11233445888888773211 1111 0111100111
Q ss_pred HHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHH
Q 011979 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (473)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (473)
.+.... -+..++ +..+||+||++.+.. .. .+.++++..++|+|++.|+... + ...+++
T Consensus 81 ~~~~~~-~l~~~l-~~~~pDvv~~~~~~~--~~-~~~~~~~~~~~p~v~~~~~~~~-------~----------~~~~~~ 138 (364)
T 1f0k_A 81 IFNAWR-QARAIM-KAYKPDVVLGMGGYV--SG-PGGLAAWSLGIPVVLHEQNGIA-------G----------LTNKWL 138 (364)
T ss_dssp HHHHHH-HHHHHH-HHHCCSEEEECSSTT--HH-HHHHHHHHTTCCEEEEECSSSC-------C----------HHHHHH
T ss_pred HHHHHH-HHHHHH-HhcCCCEEEEeCCcC--ch-HHHHHHHHcCCCEEEEecCCCC-------c----------HHHHHH
Confidence 111111 111222 236899999997542 22 2455666778999999998621 1 124456
Q ss_pred hhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchh
Q 011979 164 GKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (473)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
.+.+|.+++.++.. ++ ++.+++|+.. +.|.+.. .+ .+++
T Consensus 139 ~~~~d~v~~~~~~~-------~~-~~~~i~n~v~~~~~~~~~--~~----~~~~-------------------------- 178 (364)
T 1f0k_A 139 AKIATKVMQAFPGA-------FP-NAEVVGNPVRTDVLALPL--PQ----QRLA-------------------------- 178 (364)
T ss_dssp TTTCSEEEESSTTS-------SS-SCEECCCCCCHHHHTSCC--HH----HHHT--------------------------
T ss_pred HHhCCEEEecChhh-------cC-CceEeCCccchhhcccch--hh----hhcc--------------------------
Confidence 77899999998764 22 5678888743 3333221 11 1111
Q ss_pred hhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEE-EEE
Q 011979 243 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FII 321 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i 321 (473)
.+++++.+++++|++.+.|+.+.+++|+..+.+ +++ +++
T Consensus 179 ----------~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~------------------------------~~~~l~i 218 (364)
T 1f0k_A 179 ----------GREGPVRVLVVGGSQGARILNQTMPQVAAKLGD------------------------------SVTIWHQ 218 (364)
T ss_dssp ----------TCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG------------------------------GEEEEEE
T ss_pred ----------cCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC------------------------------CcEEEEE
Confidence 233455567777899999999999999998731 577 677
Q ss_pred EcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccc-
Q 011979 322 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE- 400 (473)
Q Consensus 322 vG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~- 400 (473)
+|+|+ .+.+++.++++++++|.|+|+ + +++..+|+.||++|+ +| + |++++|||+||+|||+++.++..
T Consensus 219 ~G~~~-~~~l~~~~~~~~~~~v~~~g~-~--~~~~~~~~~ad~~v~---~s-g---~~~~~EAma~G~Pvi~~~~~g~~~ 287 (364)
T 1f0k_A 219 SGKGS-QQSVEQAYAEAGQPQHKVTEF-I--DDMAAAYAWADVVVC---RS-G---ALTVSEIAAAGLPALFVPFQHKDR 287 (364)
T ss_dssp CCTTC-HHHHHHHHHHTTCTTSEEESC-C--SCHHHHHHHCSEEEE---CC-C---HHHHHHHHHHTCCEEECCCCCTTC
T ss_pred cCCch-HHHHHHHHhhcCCCceEEecc-h--hhHHHHHHhCCEEEE---CC-c---hHHHHHHHHhCCCEEEeeCCCCch
Confidence 89887 577889999998888999998 4 899999999999999 44 2 89999999999999999988764
Q ss_pred -------cceecCCceEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011979 401 -------ELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 459 (473)
Q Consensus 401 -------e~i~~~~~G~~~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 459 (473)
+++ +.+.|++++ | +++++++|.++ + ++.+++|++++++..+.++|+...+.+
T Consensus 288 ~q~~~~~~~~-~~g~g~~~~~~d~~~~~la~~i~~l--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (364)
T 1f0k_A 288 QQYWNALPLE-KAGAAKIIEQPQLSVDAVANTLAGW--S----RETLLTMAERARAASIPDATERVANEV 350 (364)
T ss_dssp HHHHHHHHHH-HTTSEEECCGGGCCHHHHHHHHHTC--C----HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred hHHHHHHHHH-hCCcEEEeccccCCHHHHHHHHHhc--C----HHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 455 445599996 4 88999999888 4 889999999999988778877666553
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=9.2e-30 Score=264.87 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=184.2
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHH----h---hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCC--EE
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWAS----S---LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN--GC 170 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~----~---~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad--~v 170 (473)
.++|+||++. +.+...+.... . ....|+++..|+++.. +..... .+.+.+..++.++ .+
T Consensus 131 ~~~Dvv~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~v 198 (413)
T 2x0d_A 131 AKHDIFIATA---WWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPG-----FYQWSS----QYVLAESTYKYRGPQIA 198 (413)
T ss_dssp CTTEEEEECS---HHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGG-----GSCSSH----HHHHHHHTTSCCSCEEE
T ss_pred CCCCEEEEeh---HHHHHHHHHhhhhhhhhcccccCcEEEEEeechhh-----cCccCh----HHHHHHHHhccCCceEE
Confidence 5799999987 44443333221 0 2356888888887431 112121 1234555666555 58
Q ss_pred EEcCHHHHHHHHHHhCC---ceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcc
Q 011979 171 LCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (473)
Q Consensus 171 i~vS~~~~~~l~~~~g~---~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
+++|+.+++.+.+. |. ++.+++++.+ +.|.+..
T Consensus 199 i~~S~~~~~~l~~~-g~~~~~~~~i~~g~d~~~~~~~~------------------------------------------ 235 (413)
T 2x0d_A 199 VFNSELLKQYFNNK-GYNFTDEYFFQPKINTTLKNYIN------------------------------------------ 235 (413)
T ss_dssp EEESHHHHHHHHHH-TCCCSEEEEECCCCCHHHHTTTT------------------------------------------
T ss_pred EEcCHHHHHHHHHc-CCCCCceEEeCCCcCchhhcccc------------------------------------------
Confidence 99999999999875 43 3677777743 2221100
Q ss_pred cccccccCCCCCeEEEEEeec-cCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC---EEEEEE
Q 011979 247 AGIDVFLKPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR---LLFIIT 322 (473)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~G~~-~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~iv 322 (473)
...++.+ .++++|++ .+.||++.+++|+..+.++ .|+ ++|+++
T Consensus 236 -----~~~~~~~-~il~~gr~~~~~Kg~~~li~A~~~l~~~---------------------------~~~~~~~~l~iv 282 (413)
T 2x0d_A 236 -----DKRQKEK-IILVYGRPSVKRNAFTLIVEALKIFVQK---------------------------YDRSNEWKIISV 282 (413)
T ss_dssp -----SCCCCCS-EEEEEECTTCGGGCHHHHHHHHHHHHHH---------------------------CTTGGGCEEEEE
T ss_pred -----cccCCCC-EEEEEecCchhccCHHHHHHHHHHHHHh---------------------------CCCCCceEEEEE
Confidence 0112223 78888996 6889999999999998763 454 899999
Q ss_pred cCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccc
Q 011979 323 GKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE 401 (473)
Q Consensus 323 G~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e 401 (473)
|+|+.. .++++ ++|.|+|. ++.++++.+|+.||++|+ +|..|+||++++||||||+|||++. +|..|
T Consensus 283 G~~~~~-------~~l~~~~~v~f~G~-~~~~~l~~~~~~adv~v~---pS~~E~~g~~~lEAmA~G~PVV~~~-~g~~e 350 (413)
T 2x0d_A 283 GEKHKD-------IALGKGIHLNSLGK-LTLEDYADLLKRSSIGIS---LMISPHPSYPPLEMAHFGLRVITNK-YENKD 350 (413)
T ss_dssp ESCCCC-------EEEETTEEEEEEES-CCHHHHHHHHHHCCEEEC---CCSSSSCCSHHHHHHHTTCEEEEEC-BTTBC
T ss_pred cCCchh-------hhcCCcCcEEEcCC-CCHHHHHHHHHhCCEEEE---ecCCCCCCcHHHHHHhCCCcEEEeC-CCcch
Confidence 998764 24556 68999998 999999999999999999 7888999999999999999999954 56789
Q ss_pred ceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 011979 402 LVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVISQ 470 (473)
Q Consensus 402 ~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 470 (473)
++.++.+|++++ |+++++++|.+++++ ++.+++ ++++..+.++|+...++ ..++.++.+|
T Consensus 351 ~v~~~~~G~lv~~~d~~~la~ai~~ll~~----~~~~~~---~~~~~~~~~~W~~~~~~--~~~~~~l~~~ 412 (413)
T 2x0d_A 351 LSNWHSNIVSLEQLNPENIAETLVELCMS----FNNRDV---DKKESSNMMFYINEFNE--FSFIKEIEEK 412 (413)
T ss_dssp GGGTBTTEEEESSCSHHHHHHHHHHHHHH----TC----------CCBSCGGGCCCC-----TTHHHHHTT
T ss_pred hhhcCCCEEEeCCCCHHHHHHHHHHHHcC----HHHHHH---hHHHHHHhCCHHHHHHH--HHHHHHHHhh
Confidence 999999999885 799999999999985 555555 56666678999988766 5555555554
No 17
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=1.7e-27 Score=241.15 Aligned_cols=263 Identities=12% Similarity=0.040 Sum_probs=185.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+||+|++. .+.. .+.++++..++|+++..|+... ......+.. ...++.+.+.+|.++++|+..++
T Consensus 94 ~~pDvv~~~~~~-~~~~-~~~~~~~~~~ip~v~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~d~ii~~s~~~~~ 163 (375)
T 3beo_A 94 AKPDIVLVHGDT-TTTF-IASLAAFYNQIPVGHVEAGLRT------WDKYSPYPE--EMNRQLTGVMADLHFSPTAKSAT 163 (375)
T ss_dssp HCCSEEEEETTS-HHHH-HHHHHHHHTTCCEEEESCCCCC------SCTTSSTTH--HHHHHHHHHHCSEEEESSHHHHH
T ss_pred hCCCEEEEeCCc-hHHH-HHHHHHHHHCCCEEEEeccccc------ccccCCChh--HhhhhHHhhhhheeeCCCHHHHH
Confidence 789999998742 2222 3556667788999987776511 111111100 12233445569999999999999
Q ss_pred HHHHHhCCc---eEEeeCC-CC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 180 ELAQNWGIK---ATVLYDQ-PP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 180 ~l~~~~g~~---~~vi~n~-~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.+.+ +|.+ +.+++|+ .+ ..|.+... .+.+++.+ +
T Consensus 164 ~~~~-~g~~~~~i~vi~n~~~d~~~~~~~~~-~~~~~~~~--------------------------------------~- 202 (375)
T 3beo_A 164 NLQK-ENKDESRIFITGNTAIDALKTTVKET-YSHPVLEK--------------------------------------L- 202 (375)
T ss_dssp HHHH-TTCCGGGEEECCCHHHHHHHHHCCSS-CCCHHHHT--------------------------------------T-
T ss_pred HHHH-cCCCcccEEEECChhHhhhhhhhhhh-hhHHHHHh--------------------------------------c-
Confidence 9876 5663 7888886 22 12211100 01111111 1
Q ss_pred CCCCeEEEEEeeccCC-CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHH
Q 011979 255 PNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~-K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
++++.+++++|++.+. ||++.+++|+..+.++ .|++++++ |.|+. ..+++
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~~i~-~~g~~-~~~~~ 253 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDK---------------------------HEDVQVVY-PVHMN-PVVRE 253 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHH---------------------------CTTEEEEE-ECCSC-HHHHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhh---------------------------CCCeEEEE-eCCCC-HHHHH
Confidence 2244477899999875 9999999999998773 57898654 66765 34555
Q ss_pred HHHHc-CC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec-cCccccceecCCceE
Q 011979 334 KIRRL-RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGL 410 (473)
Q Consensus 334 ~~~~~-~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~-~~~~~e~i~~~~~G~ 410 (473)
.++++ +. ++|.|+|. ++..++..+|+.||++|+ +| |..++|||+||+|||+++ .++..+++.++ +|+
T Consensus 254 ~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~v~---~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~ 323 (375)
T 3beo_A 254 TANDILGDYGRIHLIEP-LDVIDFHNVAARSYLMLT---DS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLK 323 (375)
T ss_dssp HHHHHHTTCTTEEEECC-CCHHHHHHHHHTCSEEEE---CC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEE
T ss_pred HHHHHhhccCCEEEeCC-CCHHHHHHHHHhCcEEEE---CC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceE
Confidence 55554 33 69999987 888899999999999999 45 567999999999999996 48899998777 999
Q ss_pred EeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011979 411 LFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 456 (473)
Q Consensus 411 ~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 456 (473)
+++ |+++++++|.+++++ ++.+++|+++++++...++|+...
T Consensus 324 ~v~~d~~~la~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~i~ 366 (375)
T 3beo_A 324 LAGTDEETIFSLADELLSD----KEAHDKMSKASNPYGDGRASERIV 366 (375)
T ss_dssp ECCSCHHHHHHHHHHHHHC----HHHHHHHCCCCCTTCCSCHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHhC----hHhHhhhhhcCCCCCCCcHHHHHH
Confidence 994 899999999999995 889999998887755445544433
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.95 E-value=3.1e-27 Score=244.88 Aligned_cols=328 Identities=12% Similarity=0.059 Sum_probs=210.2
Q ss_pred CeEEEEEec-CC-CCChhHHHHHHHHHhhCCCcEEEEecCCCC-------C-------CcccccCCCEEEEEeecCCCCC
Q 011979 5 GRACVVVLG-DL-GRSPRMQYQALSLARQMSLEVDVVAYGGSK-------P-------HAAILEHPSIHIHTMTQWPTIP 68 (473)
Q Consensus 5 ~~~~i~~~~-~~-g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~-------~-------~~~~~~~~~i~i~~~~~~~~~~ 68 (473)
++++++... .. +..+...+.+..|+++ | +|+|++..... . .+.....+|+++++......+.
T Consensus 15 MkIl~is~~~~p~~~~~~~~~l~~~l~~~-G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~ 92 (406)
T 2hy7_A 15 PCYLVLSSHDFRTPRRANIHFITDQLALR-G-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLWRTTVHPF 92 (406)
T ss_dssp SCEEEEESSCTTSSSCCHHHHHHHHHHHH-S-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEECCBSSCCC
T ss_pred ceEEEEecccCCChhhhhHhHHHHHHHhC-C-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEeeccccCCc
Confidence 345545433 22 2334445666778877 9 99999643210 0 0111224688888765322221
Q ss_pred CCCcchhHHHHHH-HHHH-HHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhc
Q 011979 69 RGLPKVLKPVLLL-LKPL-IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL 146 (473)
Q Consensus 69 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~ 146 (473)
.......+.+... .... ......+..+. .++|+||.... .... ++ .+++..++|+++++|+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~DvIh~~~~--~~~~-~~-~~~~~~~~p~v~~~h~~~~~~---~~ 162 (406)
T 2hy7_A 93 NTRRSWLRPVEDAMFRWYAAHPPKQLLDWM---RESDVIVFESG--IAVA-FI-ELAKRVNPAAKLVYRASDGLS---TI 162 (406)
T ss_dssp CCCCGGGHHHHHHHHHHHHHCCCHHHHHHH---HHCSEEEEESS--GGGG-GH-HHHHHHCTTSEEEEEESSCHH---HH
T ss_pred cccchhhhccchhHHHHHHHhHHHHHHHHh---cCCCEEEECCc--hHHH-HH-HHHHHhCCCEEEEEeccchhh---cc
Confidence 1111222222110 0000 00000111111 36899995442 2111 11 233445789999999752200 01
Q ss_pred CCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCc
Q 011979 147 GRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGV 225 (473)
Q Consensus 147 ~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~ 225 (473)
. .. ...+.+++...+.+|.++++|+.+++.+.+. + ++.+++||.+ +.|.+..
T Consensus 163 ~-~~---~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~-~i~vipngvd~~~f~~~~--------------------- 215 (406)
T 2hy7_A 163 N-VA---SYIEREFDRVAPTLDVIALVSPAMAAEVVSR-D-NVFHVGHGVDHNLDQLGD--------------------- 215 (406)
T ss_dssp T-CC---HHHHHHHHHHGGGCSEEEESCGGGGGGCSCS-T-TEEECCCCBCTTHHHHHC---------------------
T ss_pred c-cc---HHHHHHHHHHHHhCCEEEEcCHHHHHHHHhc-C-CEEEEcCCcChHhcCccc---------------------
Confidence 1 11 2344667888899999999999999888653 5 8999999944 4442211
Q ss_pred ccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhh
Q 011979 226 QDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKE 305 (473)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (473)
..+.+.+..++|+|++.+.||+ ++++ .+
T Consensus 216 --------------------------~~~~~~~~~i~~vGrl~~~Kg~---~~~l---~~-------------------- 243 (406)
T 2hy7_A 216 --------------------------PSPYAEGIHAVAVGSMLFDPEF---FVVA---SK-------------------- 243 (406)
T ss_dssp --------------------------SCSCCSSEEEEEECCTTBCHHH---HHHH---HH--------------------
T ss_pred --------------------------ccccCCCcEEEEEeccccccCH---HHHH---HH--------------------
Confidence 0011232489999999999998 3333 33
Q ss_pred hccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHH
Q 011979 306 ISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDM 384 (473)
Q Consensus 306 ~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Ea 384 (473)
..|+++|+|+|+|+ ++++++ ++|.|+|. ++.+++..+|+.||++|+ ||..|++|++++||
T Consensus 244 -------~~~~~~l~ivG~g~--------~~~~~l~~~V~f~G~-~~~~~l~~~~~~adv~v~---ps~~E~~~~~~lEA 304 (406)
T 2hy7_A 244 -------AFPQVTFHVIGSGM--------GRHPGYGDNVIVYGE-MKHAQTIGYIKHARFGIA---PYASEQVPVYLADS 304 (406)
T ss_dssp -------HCTTEEEEEESCSS--------CCCTTCCTTEEEECC-CCHHHHHHHHHTCSEEEC---CBSCSCCCTTHHHH
T ss_pred -------hCCCeEEEEEeCch--------HHhcCCCCCEEEcCC-CCHHHHHHHHHhcCEEEE---CCCcccCchHHHHH
Confidence 15899999999987 556677 79999998 999999999999999999 67789999999999
Q ss_pred H-------hcCCcEEEeccCccccceecCCceEE-eC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHH
Q 011979 385 F-------GCGLPVCAVSYSCIEELVKVDKNGLL-FS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 454 (473)
Q Consensus 385 m-------a~G~PvI~~~~~~~~e~i~~~~~G~~-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 454 (473)
| |||+|||+|+. +.++.+|++ ++ |+++|+++|.+++++ ++ .+..+.++|+.
T Consensus 305 m~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~~~la~ai~~ll~~----~~---------~~~~~~~sw~~ 365 (406)
T 2hy7_A 305 SMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNADSVIAAITQALEA----PR---------VRYRQCLNWSD 365 (406)
T ss_dssp CHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCHHHHHHHHHHHHHC----CC---------CCCSCCCBHHH
T ss_pred HHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCHHHHHHHHHHHHhC----cc---------hhhhhcCCHHH
Confidence 9 99999999987 667888998 75 799999999999996 22 13346899988
Q ss_pred HHHHHHH
Q 011979 455 EWEEHAK 461 (473)
Q Consensus 455 ~~~~~~~ 461 (473)
..+++.+
T Consensus 366 ~a~~~~~ 372 (406)
T 2hy7_A 366 TTDRVLD 372 (406)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8777653
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.94 E-value=1.4e-26 Score=235.46 Aligned_cols=268 Identities=15% Similarity=0.112 Sum_probs=185.0
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchH-HHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||+||++++.. ... .+.++++..++|++++.|+... ......+ .. .....+.+.+|.++++|+..+
T Consensus 85 ~~pDvv~~~~~~~-~~~-~~~~~a~~~~ip~v~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~d~ii~~s~~~~ 153 (384)
T 1vgv_A 85 FKPDVVLVHGDTT-TTL-ATSLAAFYQRIPVGHVEAGLRT------GDLYSPWPEE---ANRTLTGHLAMYHFSPTETSR 153 (384)
T ss_dssp HCCSEEEEETTCH-HHH-HHHHHHHTTTCCEEEESCCCCC------SCTTSSTTHH---HHHHHHHTTCSEEEESSHHHH
T ss_pred hCCCEEEEeCCch-HHH-HHHHHHHHHCCCEEEEeccccc------ccccCCCchH---hhHHHHHhhccEEEcCcHHHH
Confidence 7899999997422 222 3456667788999999888731 1110111 11 112233567999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCC-CCCcccCC-----hhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccc
Q 011979 179 HELAQNWGIK---ATVLYDQP-PEFFHPTS-----LEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGI 249 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~-~~~f~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
+.+.+ +|.+ +.+++|+. +..+.+.. ...+.+++.+++
T Consensus 154 ~~l~~-~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 199 (384)
T 1vgv_A 154 QNLLR-ENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYP--------------------------------- 199 (384)
T ss_dssp HHHHH-TTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCT---------------------------------
T ss_pred HHHHH-cCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhcc---------------------------------
Confidence 98876 5764 67777762 21111000 000112222211
Q ss_pred ccccCCCCCeEEEEEeeccCC-CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCC-
Q 011979 250 DVFLKPNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP- 326 (473)
Q Consensus 250 ~~~~~~~~~~~i~~~G~~~~~-K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~- 326 (473)
.++++++.+++++|++.+. ||++.+++|+..+.++ .|+++++++ |.++
T Consensus 200 --~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~---------------------------~~~~~l~i~~g~~~~ 250 (384)
T 1vgv_A 200 --FIDPDKKMILVTGHRRESFGRGFEEICHALADIATT---------------------------HQDIQIVYPVHLNPN 250 (384)
T ss_dssp --TCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCBCHH
T ss_pred --ccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhh---------------------------CCCeEEEEEcCCCHH
Confidence 0223455588899999876 9999999999998773 578999886 5443
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc-Cccccceec
Q 011979 327 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKV 405 (473)
Q Consensus 327 ~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~-~~~~e~i~~ 405 (473)
..+.+++.++. .++|.|+|. ++.+++..+|+.||++|+ +| |..++|||+||+|||+++. ++..+++.+
T Consensus 251 ~~~~l~~~~~~--~~~v~~~g~-~~~~~~~~~~~~ad~~v~---~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~ 319 (384)
T 1vgv_A 251 VREPVNRILGH--VKNVILIDP-QEYLPFVWLMNHAWLILT---DS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTA 319 (384)
T ss_dssp HHHHHHHHHTT--CTTEEEECC-CCHHHHHHHHHHCSEEEE---SS-----STGGGTGGGGTCCEEEESSCCSCHHHHHH
T ss_pred HHHHHHHHhhc--CCCEEEeCC-CCHHHHHHHHHhCcEEEE---CC-----cchHHHHHHcCCCEEEccCCCCcchhhhC
Confidence 22333333321 269999987 888999999999999999 45 2348999999999999986 888999877
Q ss_pred CCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011979 406 DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 457 (473)
Q Consensus 406 ~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 457 (473)
+ +|++++ |+++++++|.+++++ ++.+++|+++++++...++|+...+
T Consensus 320 g-~g~lv~~d~~~la~~i~~ll~d----~~~~~~~~~~~~~~~~~~~~~~i~~ 367 (384)
T 1vgv_A 320 G-TVRLVGTDKQRIVEEVTRLLKD----ENEYQAMSRAHNPYGDGQACSRILE 367 (384)
T ss_dssp T-SEEEECSSHHHHHHHHHHHHHC----HHHHHHHHSSCCTTCCSCHHHHHHH
T ss_pred C-ceEEeCCCHHHHHHHHHHHHhC----hHHHhhhhhccCCCcCCCHHHHHHH
Confidence 7 999996 899999999999995 8899999998877654555544433
No 20
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=1.5e-25 Score=201.80 Aligned_cols=162 Identities=13% Similarity=0.252 Sum_probs=141.5
Q ss_pred CeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHH
Q 011979 258 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 337 (473)
Q Consensus 258 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~ 337 (473)
|..++|+|++.+.||++.+++|+..+++ .|+++|+|+|+|+..+.+++.+++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~----------------------------~~~~~l~i~G~g~~~~~~~~~~~~ 53 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY----------------------------KQDIVLLLKGKGPDEKKIKLLAQK 53 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT----------------------------GGGEEEEEECCSTTHHHHHHHHHH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc----------------------------CCCeEEEEEeCCccHHHHHHHHHH
Confidence 4589999999999999999999999854 479999999999999999999999
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCC-cEEEe-ccCccccceecCCceEEeCCH
Q 011979 338 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-PVCAV-SYSCIEELVKVDKNGLLFSSS 415 (473)
Q Consensus 338 ~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~-PvI~~-~~~~~~e~i~~~~~G~~~~~~ 415 (473)
+++ +|.| |+ ++.+++..+|+.||++|+ ||..|++|++++|||+||+ |||++ +.++..+++.++.+.+...|+
T Consensus 54 ~~~-~v~~-g~-~~~~~~~~~~~~adv~v~---ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (166)
T 3qhp_A 54 LGV-KAEF-GF-VNSNELLEILKTCTLYVH---AANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNA 127 (166)
T ss_dssp HTC-EEEC-CC-CCHHHHHHHHTTCSEEEE---CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCH
T ss_pred cCC-eEEE-ee-cCHHHHHHHHHhCCEEEE---CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCH
Confidence 998 8999 87 999999999999999999 6888999999999999998 99994 688999999887664444589
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011979 416 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 457 (473)
Q Consensus 416 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 457 (473)
++++++|.+++++ ++.+++|++++++..++|+|+...+
T Consensus 128 ~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~~ 165 (166)
T 3qhp_A 128 KDLSAKIDWWLEN----KLERERMQNEYAKSALNYTLENSVI 165 (166)
T ss_dssp HHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHCChhhhhc
Confidence 9999999999995 9999999999999888899887554
No 21
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=2.3e-25 Score=238.94 Aligned_cols=260 Identities=12% Similarity=0.078 Sum_probs=191.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+||.+.+...... .+.++ .+..|+++++|++.. ..... ...+..+|.++++|+..++
T Consensus 281 ~~~Div~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~~d~~i~~s~~~~~ 341 (568)
T 2vsy_A 281 HGIDLLFDLRGWGGGGR-PEVFA--LRPAPVQVNWLAYPG-------TSGAP---------WMDYVLGDAFALPPALEPF 341 (568)
T ss_dssp TTCSEEEECSSCTTCSS-CHHHH--TCCSSEEEEESSSSS-------CCCCT---------TCCEEEECTTTSCTTTGGG
T ss_pred CCCCEEEECCCCCCcch-HHHHh--cCCCceeEeeecCCc-------ccCCC---------CceEEEECCCcCCcccccC
Confidence 78999998654332211 12222 245688888887521 00000 0112357888899987653
Q ss_pred HHHHHhCCceEEeeCCCCCCcccCCh---hHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCC
Q 011979 180 ELAQNWGIKATVLYDQPPEFFHPTSL---EEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (473)
Q Consensus 180 ~l~~~~g~~~~vi~n~~~~~f~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (473)
++.++.++||. |.+... ..+...+.+++ ++++
T Consensus 342 -----~~~~i~~ipn~----~~~~~~~~~~~~~~~r~~~~------------------------------------~~~~ 376 (568)
T 2vsy_A 342 -----YSEHVLRLQGA----FQPSDTSRVVAEPPSRTQCG------------------------------------LPEQ 376 (568)
T ss_dssp -----CSSEEEECSSC----SCCCCTTCCCCCCCCTGGGT------------------------------------CCTT
T ss_pred -----CcceeEcCCCc----CCCCCCCCCCCCCCCccccC------------------------------------CCCC
Confidence 45668888883 222210 00001111121 2222
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEc-CCCChHHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KGPDKESYEEKI 335 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG-~g~~~~~l~~~~ 335 (473)
+ +++++|++.+ ||++.+++|+..+.++ .|+++|+|+| +|+..+.+++.+
T Consensus 377 -~-~v~~~g~~~~-K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~~g~~~~~l~~~~ 426 (568)
T 2vsy_A 377 -G-VVLCCFNNSY-KLNPQSMARMLAVLRE---------------------------VPDSVLWLLSGPGEADARLRAFA 426 (568)
T ss_dssp -S-CEEEECCCGG-GCCHHHHHHHHHHHHH---------------------------CTTCEEEEECCSTTHHHHHHHHH
T ss_pred -C-EEEEeCCccc-cCCHHHHHHHHHHHHh---------------------------CCCcEEEEecCCHHHHHHHHHHH
Confidence 2 5669999999 9999999999998773 6899999999 899889999999
Q ss_pred HHcCC--CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE-------eccC-------cc
Q 011979 336 RRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYS-------CI 399 (473)
Q Consensus 336 ~~~~l--~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~-------~~~~-------~~ 399 (473)
+++++ ++|.|+|+ ++.+++..+|+.||++|+ ||.. ++|++++|||+||+|||+ |+.+ |+
T Consensus 427 ~~~~l~~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~ 501 (568)
T 2vsy_A 427 HAQGVDAQRLVFMPK-LPHPQYLARYRHADLFLD---THPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGL 501 (568)
T ss_dssp HHTTCCGGGEEEECC-CCHHHHHHHGGGCSEEEC---CSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTC
T ss_pred HHcCCChhHEEeeCC-CCHHHHHHHHhcCCEEee---CCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCC
Confidence 99998 58999998 999999999999999999 6766 899999999999999999 9998 88
Q ss_pred ccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHhhcc
Q 011979 400 EELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG---LSARWATEWEEHAKPLITEVISQF 471 (473)
Q Consensus 400 ~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~ 471 (473)
.|++.+ |+++++++|.+++++ ++.+++|++++++.. +.|+|+...++ +..+++++..++
T Consensus 502 ~e~v~~--------~~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~y~~~~~~~ 563 (568)
T 2vsy_A 502 DEMNVA--------DDAAFVAKAVALASD----PAALTALHARVDVLRRASGVFHMDGFADD-FGALLQALARRH 563 (568)
T ss_dssp GGGBCS--------SHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHSSTTCHHHHHHH-HHHHHHHHHHTT
T ss_pred hhhhcC--------CHHHHHHHHHHHhcC----HHHHHHHHHHHHHhhhcCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 887754 899999999999995 899999999998876 67999887766 455666665543
No 22
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.92 E-value=8.3e-24 Score=214.44 Aligned_cols=258 Identities=12% Similarity=0.050 Sum_probs=186.2
Q ss_pred hhCCCCEEEEeCCCchhHHHHHHHHHhh--CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCH
Q 011979 98 KIASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (473)
Q Consensus 98 ~~~~~Dvi~~~~p~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (473)
...++|+|+++.|+.......+.++.++ +++|+|+.+||++... .. .+. .....|+.+++.||.|++.|+
T Consensus 71 ~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~----~~-~~~---~~~~~E~~~y~~aD~Ii~~S~ 142 (339)
T 3rhz_A 71 GLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLM----FS-GNF---YLMDRTIAYYNKADVVVAPSQ 142 (339)
T ss_dssp TCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHH----CG-GGG---GGHHHHHHHHTTCSEEEESCH
T ss_pred cCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhh----Cc-cch---hhHHHHHHHHHHCCEEEECCH
Confidence 4578999999999864333223344443 3899999999995311 11 111 122469999999999999999
Q ss_pred HHHHHHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 176 AMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 176 ~~~~~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
.+++.+.+ .|.+ ..+++.+..+...+.+. . .
T Consensus 143 ~~~~~l~~-~G~~~~ki~~~~~~~~~~~~~~----------------------------------------------~-~ 174 (339)
T 3rhz_A 143 KMIDKLRD-FGMNVSKTVVQGMWDHPTQAPM----------------------------------------------F-P 174 (339)
T ss_dssp HHHHHHHH-TTCCCSEEEECCSCCCCCCCCC----------------------------------------------C-C
T ss_pred HHHHHHHH-cCCCcCceeecCCCCccCcccc----------------------------------------------c-c
Confidence 99999987 4766 34443321100000000 0 1
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~ 334 (473)
+.....++|+|+++.... +..+ .++++|+|+|+|++.
T Consensus 175 ~~~~~~i~yaG~l~k~~~-------L~~l------------------------------~~~~~f~ivG~G~~~------ 211 (339)
T 3rhz_A 175 AGLKREIHFPGNPERFSF-------VKEW------------------------------KYDIPLKVYTWQNVE------ 211 (339)
T ss_dssp CEEEEEEEECSCTTTCGG-------GGGC------------------------------CCSSCEEEEESCCCC------
T ss_pred cCCCcEEEEeCCcchhhH-------HHhC------------------------------CCCCeEEEEeCCccc------
Confidence 112238999999984211 1111 268999999999874
Q ss_pred HHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC-C----CCCCcHHHHHHHhcCCcEEEeccCccccceecCCce
Q 011979 335 IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S----GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 409 (473)
Q Consensus 335 ~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s-~----~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G 409 (473)
+ ++||.|+|. +|.++++.+++.+|+++++ .+. . ...+|.|++||||||+|||+++.++..+++.++++|
T Consensus 212 --~--l~nV~f~G~-~~~~el~~~l~~~~~~lv~-~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G 285 (339)
T 3rhz_A 212 --L--PQNVHKINY-RPDEQLLMEMSQGGFGLVW-MDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLG 285 (339)
T ss_dssp --C--CTTEEEEEC-CCHHHHHHHHHTEEEEECC-CCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCE
T ss_pred --C--cCCEEEeCC-CCHHHHHHHHHhCCEEEEE-CCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeE
Confidence 1 349999998 9999999999999999985 111 1 146799999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011979 410 LLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 466 (473)
Q Consensus 410 ~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 466 (473)
+++++.++++++|..+. ++.+++|++|+++.++.++|..--++.+.+.+.+
T Consensus 286 ~~~~~~~e~~~~i~~l~------~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~ 336 (339)
T 3rhz_A 286 WIVKDVEEAIMKVKNVN------EDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQ 336 (339)
T ss_dssp EEESSHHHHHHHHHHCC------HHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999998762 5679999999999888888877766666554433
No 23
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.92 E-value=6e-23 Score=221.18 Aligned_cols=327 Identities=17% Similarity=0.093 Sum_probs=209.4
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhh-h--hh------cCCCch----H---HHHHHHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLL-S--LS------LGRRSH----F---VSIYRWIEKY 162 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~-~--~~------~~~~~~----~---~~~~~~~e~~ 162 (473)
..||++|+|. +.+..+..+++. ..++|.|+++|...+.-. . .. +..... . ..-...+|+.
T Consensus 180 ~~pdIiH~HD---W~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHE---WLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEES---GGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCc---hhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 4589999999 555544555543 568999999999831000 0 00 000000 0 0112456888
Q ss_pred HhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCC-CCCCcccCCh--hHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 163 YGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~-~~~~f~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
....||.++|||+.++++++..++.+ -.+|+|| +.+.|.|... +.+.+-+.++...+
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~iIpNGID~~~f~p~~~~~~~k~~aK~klq~~l------------------- 317 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFV------------------- 317 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHHHTSSCCSEECCCCBCCCCCSSTTHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHhCCEEEECCHHHHHHHHHHhcCCCCEEEcCCccccccCcchhhHHHHHHHHHHHHHHH-------------------
Confidence 88899999999999999999877766 3459999 5578877521 12222222221100
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeecc-CCCCHHHHHHHHHHhHHHHHhh----------hccCCCc----------
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAI----------LNEDDST---------- 297 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-~~K~~~~li~a~~~l~~~~~~~----------~~~~~~~---------- 297 (473)
..+|. +.+.+++++..+++.+||+. .+||++.+++|+..+..+++.. +--++..
T Consensus 318 -~~~~~----~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 318 -RGHFH----GCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp -HHHTT----TCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred -Hhhcc----cCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 00000 01123334444677789999 6899999999999998763211 0001100
Q ss_pred ---------------------------------------hhh--------HHHhhhc-----cCccccCCCEEEEEEcCC
Q 011979 298 ---------------------------------------NEE--------VFLKEIS-----DGKQYLYPRLLFIITGKG 325 (473)
Q Consensus 298 ---------------------------------------~~~--------~~~~~~~-----~~~~~~~~~~~l~ivG~g 325 (473)
+.+ |.+|.|. ...+ ..|=+.=.++-
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~-lpp~~TH~~~~-- 469 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQ-LPPIVTHNMVD-- 469 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTC-CCCSBSEEETT--
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCC-CCCeeeeeccc--
Confidence 000 1111110 0000 01111111211
Q ss_pred CChHHHHHHHHHcCC-Cc------EEEecCCCCcc------cHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEE
Q 011979 326 PDKESYEEKIRRLRL-KR------VAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 326 ~~~~~l~~~~~~~~l-~~------V~~~g~~v~~~------~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI 392 (473)
...+.+...++++++ ++ |.|++.|++.. ++..+|+.||++|+ ||..|+||++++||||||+|||
T Consensus 470 ~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~---PS~~EgfGl~~LEAmA~G~PvI 546 (725)
T 3nb0_A 470 DANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVF---PSYYEPWGYTPAECTVMGVPSI 546 (725)
T ss_dssp GGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEEC---CCSSBSSCHHHHHHHHTTCCEE
T ss_pred CCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEe---ccccCCCCHHHHHHHHcCCCEE
Confidence 224567788888888 33 78888889876 59999999999999 7999999999999999999999
Q ss_pred EeccCccccceecC-------CceEEeC-----CHHHHHHHH----HHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011979 393 AVSYSCIEELVKVD-------KNGLLFS-----SSSELADQL----LMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 456 (473)
Q Consensus 393 ~~~~~~~~e~i~~~-------~~G~~~~-----~~~~la~~i----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 456 (473)
+|+.+|..++|.++ .+|+++. |+++++++| ..+++. ++..+.+|++++++.++.++|+...
T Consensus 547 ~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~---d~~~r~~mr~~ar~~A~~FSWe~iA 623 (725)
T 3nb0_A 547 TTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKK---TRRQRINQRNATEALSDLLDWKRMG 623 (725)
T ss_dssp EETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHGGGGGBHHHHH
T ss_pred EeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999998875 3698772 455555444 444443 5788899999999988899999988
Q ss_pred HHHHHH
Q 011979 457 EEHAKP 462 (473)
Q Consensus 457 ~~~~~~ 462 (473)
+++++.
T Consensus 624 ~~Yl~~ 629 (725)
T 3nb0_A 624 LEYVKA 629 (725)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886643
No 24
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.92 E-value=3.8e-24 Score=198.17 Aligned_cols=151 Identities=20% Similarity=0.266 Sum_probs=139.7
Q ss_pred EEEEEeecc-CCCCHHHHHHHHHHhH--HHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC--ChHHHHHH
Q 011979 260 LVVSSTSWT-PDEDFGILLEAALMYD--RRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEK 334 (473)
Q Consensus 260 ~i~~~G~~~-~~K~~~~li~a~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~l~~~ 334 (473)
+++|+|++. +.||++.+++|+..+. + ..|+++|+|+|.|+ ..+.+++.
T Consensus 38 ~i~~~G~~~~~~K~~~~li~a~~~l~~~~---------------------------~~~~~~l~i~G~~~~~~~~~l~~~ 90 (200)
T 2bfw_A 38 TFMFIGRFDRGQKGVDVLLKAIEILSSKK---------------------------EFQEMRFIIIGKGDPELEGWARSL 90 (200)
T ss_dssp EEEEESCBCSSSSCHHHHHHHHHHHTTSG---------------------------GGGGEEEEEECCBCHHHHHHHHHH
T ss_pred EEEEeeccccccCCHHHHHHHHHHHHhhc---------------------------cCCCeEEEEECCCChHHHHHHHHH
Confidence 899999999 9999999999999985 4 25789999999998 78889999
Q ss_pred HHHcCCCcEEE-ecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCceEEeC
Q 011979 335 IRRLRLKRVAF-RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 413 (473)
Q Consensus 335 ~~~~~l~~V~~-~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~G~~~~ 413 (473)
+++++ +|.| +|. ++.+++..+|+.||++|+ +|..|++|++++|||+||+|||+++.++..+++ ++.+|++++
T Consensus 91 ~~~~~--~v~~~~g~-~~~~~~~~~~~~ad~~l~---ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~ 163 (200)
T 2bfw_A 91 EEKHG--NVKVITEM-LSREFVRELYGSVDFVII---PSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVK 163 (200)
T ss_dssp HHHCT--TEEEECSC-CCHHHHHHHHTTCSEEEE---CCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEEC
T ss_pred HHhcC--CEEEEecc-CCHHHHHHHHHHCCEEEE---CCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEec
Confidence 99988 9999 988 999999999999999999 677799999999999999999999999999999 899999997
Q ss_pred --CHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhcc
Q 011979 414 --SSSELADQLLMLFK-GFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 414 --~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~ 448 (473)
|+++++++|.++++ + ++.+++|++++++..+
T Consensus 164 ~~~~~~l~~~i~~l~~~~----~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 164 AGDPGELANAILKALELS----RSDLSKFRENCKKRAM 197 (200)
T ss_dssp TTCHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHH
Confidence 79999999999999 6 8999999999998663
No 25
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.90 E-value=2.6e-22 Score=212.62 Aligned_cols=276 Identities=9% Similarity=-0.002 Sum_probs=186.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHh-hCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+|+||+|++.... +...++. ..++|+++++|........ +.. -+... .+-+. ...+|.+...+....
T Consensus 122 ~~~DiV~vHdyhl~~---l~~~lr~~~~~~~i~~~~H~pfp~~~~--~~~-lp~~~---~il~~-ll~~d~i~f~~~~~~ 191 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLP---FAHELRKRGVNNRIGFFLHIPFPTPEI--FNA-LPTYD---TLLEQ-LCDYDLLGFQTENDR 191 (482)
T ss_dssp CTTCEEEEESGGGTT---HHHHHHHTTCCSCEEEECCSCCCCHHH--HTT-STTHH---HHHHH-HTTSSEEEESSHHHH
T ss_pred CCCCEEEEECchHHH---HHHHHHHhCCCCcEEEEEcCCCCCHHH--Hhh-CccHH---HHHHh-hhccCeEEEECHHHH
Confidence 567999999853322 3344444 4479999999986311100 000 01100 11111 124677776666554
Q ss_pred HHHHH-----------------HhCC--ceEEeeCCCC-CCcccCC----hhHHHHHHHhhhhhccCCCCcccccCCCcC
Q 011979 179 HELAQ-----------------NWGI--KATVLYDQPP-EFFHPTS----LEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (473)
Q Consensus 179 ~~l~~-----------------~~g~--~~~vi~n~~~-~~f~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (473)
..+.. .+|. ++.++|+|.+ +.|.+.. ..+..+++.+++
T Consensus 192 ~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~------------------ 253 (482)
T 1uqt_A 192 LAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK------------------ 253 (482)
T ss_dssp HHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC------------------
Confidence 44432 1232 3788899854 5554321 001334444432
Q ss_pred CCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccC
Q 011979 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (473)
+++ +++++||+.+.||++.+++|+..+.++ +
T Consensus 254 ---------------------~~~-vil~VgRl~~~Kgi~~ll~A~~~ll~~---------------------------~ 284 (482)
T 1uqt_A 254 ---------------------NVQ-NIFSVERLDYSKGLPERFLAYEALLEK---------------------------Y 284 (482)
T ss_dssp ---------------------TCE-EEEEECCBCGGGCHHHHHHHHHHHHHH---------------------------C
T ss_pred ---------------------CCE-EEEEEeCCcccCCHHHHHHHHHHHHHh---------------------------C
Confidence 123 899999999999999999999998763 3
Q ss_pred C----CEEEEEEcCC-----CC----hHHHHHHHHHcCC-------CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCC
Q 011979 315 P----RLLFIITGKG-----PD----KESYEEKIRRLRL-------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (473)
Q Consensus 315 ~----~~~l~ivG~g-----~~----~~~l~~~~~~~~l-------~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~ 374 (473)
| +++|+++|.+ ++ .+++++++.+++. ..|.++++.++.+++..+|+.||++|+ +|..
T Consensus 285 p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~---pS~~ 361 (482)
T 1uqt_A 285 PQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV---TPLR 361 (482)
T ss_dssp GGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEE---CCSS
T ss_pred ccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEE---CCCc
Confidence 3 4889999953 22 2334445544321 247765444999999999999999999 7999
Q ss_pred CCCcHHHHHHHhcCC-----cEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 375 LDLPMKVVDMFGCGL-----PVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 375 e~~p~kv~Eama~G~-----PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
|+||++++||||||+ |+|+|+.+|..+.+. +|++++ |+++++++|.+++++ ++++++++.+++++.+
T Consensus 362 EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~---~~~~r~~~~~~~~~~v 435 (482)
T 1uqt_A 362 DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTM---SLAERISRHAEMLDVI 435 (482)
T ss_dssp BSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 999999999999997 999999888777772 789986 799999999999986 5778889999998888
Q ss_pred cccchHHHHHHHHH
Q 011979 448 LSARWATEWEEHAK 461 (473)
Q Consensus 448 ~~~~w~~~~~~~~~ 461 (473)
..++|+.-.++.+.
T Consensus 436 ~~~s~~~~a~~~l~ 449 (482)
T 1uqt_A 436 VKNDINHWQECFIS 449 (482)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 77888654454443
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.90 E-value=1.4e-22 Score=205.73 Aligned_cols=268 Identities=15% Similarity=0.069 Sum_probs=181.3
Q ss_pred hCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 99 ~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
..+||+||++++... ...+.++++..++|+++..++... ......+. .....+.+.+.+|.++++|+..+
T Consensus 89 ~~~pDvv~~~~~~~~--~~~~~~~a~~~~ip~v~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 158 (376)
T 1v4v_A 89 EMGADYVLVHGDTLT--TFAVAWAAFLEGIPVGHVEAGLRS------GNLKEPFP--EEANRRLTDVLTDLDFAPTPLAK 158 (376)
T ss_dssp HTTCSEEEEESSCHH--HHHHHHHHHHTTCCEEEETCCCCC------SCTTSSTT--HHHHHHHHHHHCSEEEESSHHHH
T ss_pred HcCCCEEEEeCChHH--HHHHHHHHHHhCCCEEEEeCCCcc------ccccCCCc--hHHHHHHHHHHhceeeCCCHHHH
Confidence 378999999975322 223456677788998754443310 00001110 11234455667999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
+.+.+ .|.+ +.+++|+..+.+.. ..-...+. . .+ +
T Consensus 159 ~~l~~-~g~~~~ki~vi~n~~~d~~~~------~~~~~~~~--------------------------------~--~~-~ 196 (376)
T 1v4v_A 159 ANLLK-EGKREEGILVTGQTGVDAVLL------AAKLGRLP--------------------------------E--GL-P 196 (376)
T ss_dssp HHHHT-TTCCGGGEEECCCHHHHHHHH------HHHHCCCC--------------------------------T--TC-C
T ss_pred HHHHH-cCCCcceEEEECCchHHHHhh------hhhhhHHH--------------------------------H--hc-C
Confidence 98876 4664 56666542111100 00000000 0 11 1
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCC-ChHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP-DKESYEE 333 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~-~~~~l~~ 333 (473)
+++.+++++||+...|+++.+++|+..+.++ .|+++++++ |+|+ ..+.+++
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~lv~~~g~~~~~~~~l~~ 249 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEA---------------------------FPHLTFVYPVHLNPVVREAVFP 249 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHH---------------------------CTTSEEEEECCSCHHHHHHHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhh---------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 3455778899998888999999999998763 578888886 7665 3455555
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-ccCccccceecCCceEEe
Q 011979 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDKNGLLF 412 (473)
Q Consensus 334 ~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i~~~~~G~~~ 412 (473)
.++. .++|.|+|. ++..++..+|+.||++|. +| + ++ ++|||+||+|||++ +.++..+++.. ++|+++
T Consensus 250 ~~~~--~~~v~~~g~-~g~~~~~~~~~~ad~~v~---~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~-g~g~lv 317 (376)
T 1v4v_A 250 VLKG--VRNFVLLDP-LEYGSMAALMRASLLLVT---DS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKA-GILKLA 317 (376)
T ss_dssp HHTT--CTTEEEECC-CCHHHHHHHHHTEEEEEE---SC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHH-TSEEEC
T ss_pred Hhcc--CCCEEEECC-CCHHHHHHHHHhCcEEEE---CC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcC-CceEEC
Confidence 5432 368999987 777899999999999998 45 2 33 78999999999998 46888887754 589999
Q ss_pred -CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011979 413 -SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 465 (473)
Q Consensus 413 -~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 465 (473)
.|+++++++|.+++++ ++.+++|++++ ..+.|...++++++.+.+
T Consensus 318 ~~d~~~la~~i~~ll~d----~~~~~~~~~~~----~~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 318 GTDPEGVYRVVKGLLEN----PEELSRMRKAK----NPYGDGKAGLMVARGVAW 363 (376)
T ss_dssp CSCHHHHHHHHHHHHTC----HHHHHHHHHSC----CSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----hHhhhhhcccC----CCCCCChHHHHHHHHHHH
Confidence 5899999999999985 88889898643 356677777777665544
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=2.1e-23 Score=190.91 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=137.2
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
.++.+++ +++|+|++.+.||++.+++|+..+ ++++|+|+|.|+..+.+
T Consensus 18 ~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l-------------------------------~~~~l~i~G~~~~~~~l 65 (177)
T 2f9f_A 18 KFKCYGD-FWLSVNRIYPEKRIELQLEVFKKL-------------------------------QDEKLYIVGWFSKGDHA 65 (177)
T ss_dssp CCCCCCS-CEEEECCSSGGGTHHHHHHHHHHC-------------------------------TTSCEEEEBCCCTTSTH
T ss_pred ccCCCCC-EEEEEeccccccCHHHHHHHHHhC-------------------------------CCcEEEEEecCccHHHH
Confidence 5666666 899999999999999999999885 57899999999988889
Q ss_pred HHHHH--HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccccceecCCc
Q 011979 332 EEKIR--RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 408 (473)
Q Consensus 332 ~~~~~--~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~~~~~ 408 (473)
++.++ .+++ ++|.|+|. ++.+++..+|+.||++|+ ++..|++|++++|||+||+|||+++.++..+++.++.+
T Consensus 66 ~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~adi~v~---ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~ 141 (177)
T 2f9f_A 66 ERYARKIMKIAPDNVKFLGS-VSEEELIDLYSRCKGLLC---TAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKT 141 (177)
T ss_dssp HHHHHHHHHHSCTTEEEEES-CCHHHHHHHHHHCSEEEE---CCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTT
T ss_pred HHHHHhhhcccCCcEEEeCC-CCHHHHHHHHHhCCEEEe---CCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCc
Confidence 99999 7788 79999998 999999999999999999 67789999999999999999999999999999999999
Q ss_pred eEEe-CCHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHH
Q 011979 409 GLLF-SSSSELADQLLMLFKGFPDDSDV-LKKLRNGTLE 445 (473)
Q Consensus 409 G~~~-~~~~~la~~i~~l~~~~~~~~~~-~~~~~~~~~~ 445 (473)
|+++ .|+++++++|.+++++ ++. ++++++++++
T Consensus 142 g~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~a~~ 176 (177)
T 2f9f_A 142 GYLVNADVNEIIDAMKKVSKN----PDKFKKDCFRRAKE 176 (177)
T ss_dssp EEEECSCHHHHHHHHHHHHHC----TTTTHHHHHHHHHT
T ss_pred cEEeCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHhc
Confidence 9998 5799999999999986 333 6666666654
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.89 E-value=8.6e-22 Score=201.96 Aligned_cols=236 Identities=17% Similarity=0.136 Sum_probs=170.6
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+++++....++... ....+ |+++..+.+ ...+ +.+.+.+.+|.++++|+..++
T Consensus 110 ~~pDiv~~~~~~~~~~~~-----~~~~~-p~~~~~~~~---------~~~~--------~~~~~~~~~d~ii~~S~~~~~ 166 (374)
T 2xci_A 110 SKPKALIVVEREFWPSLI-----IFTKV-PKILVNAYA---------KGSL--------IEKILSKKFDLIIMRTQEDVE 166 (374)
T ss_dssp HCCSEEEEESCCCCHHHH-----HHCCS-CEEEEEECC---------CCCH--------HHHHHHTTCSEEEESCHHHHH
T ss_pred hCCCEEEEECccCcHHHH-----HHHhC-CEEEEEeec---------CchH--------HHHHHHHhCCEEEECCHHHHH
Confidence 689999987655455431 22233 766543332 1111 345566789999999999999
Q ss_pred HHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCC
Q 011979 180 ELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (473)
Q Consensus 180 ~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (473)
.+.+ +|.+ +.+++|+. |.+.... +. .+ ..+
T Consensus 167 ~l~~-~g~~ki~vi~n~~---f~~~~~~-~~------------------------------------------~l--~~~ 197 (374)
T 2xci_A 167 KFKT-FGAKRVFSCGNLK---FICQKGK-GI------------------------------------------KL--KGE 197 (374)
T ss_dssp HHHT-TTCCSEEECCCGG---GCCCCCS-CC------------------------------------------CC--SSC
T ss_pred HHHH-cCCCeEEEcCCCc---cCCCcCh-hh------------------------------------------hh--cCC
Confidence 9977 4764 77777651 2211100 00 01 113
Q ss_pred eEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh-HHHHHHHHH
Q 011979 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEKIRR 337 (473)
Q Consensus 259 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~l~~~~~~ 337 (473)
+++++|+. .|+++.+++|+..+.+ ..|+++|+|+|+|+.+ +++++++++
T Consensus 198 -vi~~~~~~--~k~~~~ll~A~~~l~~---------------------------~~p~~~lvivG~g~~~~~~l~~~~~~ 247 (374)
T 2xci_A 198 -FIVAGSIH--TGEVEIILKAFKEIKK---------------------------TYSSLKLILVPRHIENAKIFEKKARD 247 (374)
T ss_dssp -EEEEEEEC--GGGHHHHHHHHHHHHT---------------------------TCTTCEEEEEESSGGGHHHHHHHHHH
T ss_pred -EEEEEeCC--CchHHHHHHHHHHHHh---------------------------hCCCcEEEEECCCHHHHHHHHHHHHH
Confidence 56666653 5899999999999876 3689999999999876 589999999
Q ss_pred cCCC---------cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-ccCccccceecC-
Q 011979 338 LRLK---------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVD- 406 (473)
Q Consensus 338 ~~l~---------~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i~~~- 406 (473)
+++. +|.+.|. .+|+..+|+.||++++| +|..+.+|++++||||||+|||++ +.++..|++.+.
T Consensus 248 ~gl~~~~~~~~~~~v~~~~~---~~dl~~~y~~aDv~vl~--ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~ 322 (374)
T 2xci_A 248 FGFKTSFFENLEGDVILVDR---FGILKELYPVGKIAIVG--GTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLE 322 (374)
T ss_dssp TTCCEEETTCCCSSEEECCS---SSCHHHHGGGEEEEEEC--SSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHH
T ss_pred CCCceEEecCCCCcEEEECC---HHHHHHHHHhCCEEEEC--CcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHH
Confidence 9874 5777776 69999999999999984 345566889999999999999986 678888877542
Q ss_pred CceE--EeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 407 KNGL--LFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 407 ~~G~--~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.+|+ .+.|+++|+++|.++++ | +.+++|++++++..
T Consensus 323 ~~G~l~~~~d~~~La~ai~~ll~----d-~~r~~mg~~ar~~~ 360 (374)
T 2xci_A 323 KEGAGFEVKNETELVTKLTELLS----V-KKEIKVEEKSREIK 360 (374)
T ss_dssp HTTCEEECCSHHHHHHHHHHHHH----S-CCCCCHHHHHHHHH
T ss_pred HCCCEEEeCCHHHHHHHHHHHHh----H-HHHHHHHHHHHHHH
Confidence 2444 44689999999999998 5 56788999998865
No 29
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.85 E-value=6.8e-19 Score=185.73 Aligned_cols=268 Identities=10% Similarity=-0.042 Sum_probs=184.0
Q ss_pred CCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHH
Q 011979 101 SPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHE 180 (473)
Q Consensus 101 ~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~ 180 (473)
..|+|++|+++.++.. ..+-....+.++.+.+|-......- + +.-+.. ....+-+- ...+|.|..-+......
T Consensus 149 ~~D~VwVhDYhL~llp--~~lR~~~~~~~igfFlHiPfPs~e~--f-~~Lp~~-~r~ell~g-ll~~DligF~t~~y~~~ 221 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP--ALLREQRPDAPILLFVHIPWPSADY--W-RILPKE-IRTGILHG-MLPATTIGFFADRWCRN 221 (496)
T ss_dssp SSCEEEEESGGGTTHH--HHHHHHCTTSCEEEECCSCCCCHHH--H-TTSCHH-HHHHHHHH-HTTSSEEEESSHHHHHH
T ss_pred CCCEEEEeCccHhHHH--HHHHhhCCCCeEEEEEcCCCCCHHH--H-hhCcHh-HHHHHHHH-HHhCCEEEEecHHHHHH
Confidence 5789999996554433 3333345678999999987311110 0 111100 00111122 23689999999987765
Q ss_pred HHHH----h-CC----------------ceEEeeCC-CCCCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCc
Q 011979 181 LAQN----W-GI----------------KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (473)
Q Consensus 181 l~~~----~-g~----------------~~~vi~n~-~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (473)
+.+. . |. ++.++|+| +++.|.+...+.+.+++++++
T Consensus 222 Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---------------------- 279 (496)
T 3t5t_A 222 FLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---------------------- 279 (496)
T ss_dssp HHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT----------------------
T ss_pred HHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC----------------------
Confidence 4432 2 31 25678888 446676543222234444433
Q ss_pred cchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC--
Q 011979 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR-- 316 (473)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (473)
++ .+++++||+.+.||++.+++|+ .+.++ +|+
T Consensus 280 -----------------~~-~lIl~VgRLd~~KGi~~lL~Af-~ll~~---------------------------~P~~~ 313 (496)
T 3t5t_A 280 -----------------GH-RLVVHSGRTDPIKNAERAVRAF-VLAAR---------------------------GGGLE 313 (496)
T ss_dssp -----------------TS-EEEEEEEESSGGGCHHHHHHHH-HHHHH---------------------------TSSCT
T ss_pred -----------------Cc-eEEEEcccCccccCHHHHHHHH-HHHHh---------------------------Ccccc
Confidence 12 2899999999999999999999 76653 454
Q ss_pred -EEEEEEcC-----CCChHH----HHHHHHHcCC----CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHH
Q 011979 317 -LLFIITGK-----GPDKES----YEEKIRRLRL----KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV 382 (473)
Q Consensus 317 -~~l~ivG~-----g~~~~~----l~~~~~~~~l----~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~ 382 (473)
+.|+++|. |++.+. +++++.+++. ..|.|+|. ++.+++..+|+.||++|+ +|..|+||++.+
T Consensus 314 ~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~-v~~~el~aly~~ADv~vv---~SlrEGfgLv~~ 389 (496)
T 3t5t_A 314 KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDND-NDVNHTIACFRRADLLIF---NSTVDGQNLSTF 389 (496)
T ss_dssp TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEC-CCHHHHHHHHHHCSEEEE---CCSSBSCCSHHH
T ss_pred eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCC-CCHHHHHHHHHhccEEEE---CcccccCChhHH
Confidence 67888863 333233 4444444432 26999998 999999999999999999 899999999999
Q ss_pred HHHhcC---CcEEEeccCccccceecCCceEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch
Q 011979 383 DMFGCG---LPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW 452 (473)
Q Consensus 383 Eama~G---~PvI~~~~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 452 (473)
|||||| .|+|.|..+|..+.+. .+|++++ |++++|++|.+++++ ++++++++.+..++.+..+++
T Consensus 390 EamA~~~~~g~lVlSe~aGa~~~l~--~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~V~~~d~ 459 (496)
T 3t5t_A 390 EAPLVNERDADVILSETCGAAEVLG--EYCRSVNPFDLVEQAEAISAALAA---GPRQRAEAAARRRDAARPWTL 459 (496)
T ss_dssp HHHHHCSSCCEEEEETTBTTHHHHG--GGSEEECTTBHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCBH
T ss_pred HHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCH
Confidence 999997 8999999888888773 4789996 799999999999997 577888888888888866654
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.82 E-value=9.9e-19 Score=179.31 Aligned_cols=340 Identities=13% Similarity=0.039 Sum_probs=206.8
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeec-------------CCC---C
Q 011979 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQ-------------WPT---I 67 (473)
Q Consensus 4 ~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~-------------~~~---~ 67 (473)
++|++++..+..|+..++...+..|.++ ||+|++++... ........|+.++.++. ... +
T Consensus 20 ~MrIl~~~~~~~Gh~~~~~~la~~L~~~-GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 3otg_A 20 HMRVLFASLGTHGHTYPLLPLATAARAA-GHEVTFATGEG---FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPE 95 (412)
T ss_dssp SCEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEECGG---GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCCT
T ss_pred eeEEEEEcCCCcccHHHHHHHHHHHHHC-CCEEEEEccHH---HHHHHHhcCCceeecCcccccchhhhhhhhhcccCCc
Confidence 3456666666556666777788888887 99999999642 12344456888888872 000 0
Q ss_pred CCCCcc-hhHHHHHHHHH-HHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhh
Q 011979 68 PRGLPK-VLKPVLLLLKP-LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS 145 (473)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~ 145 (473)
...... .......+... ......-+..++ +..+||+|+++... . .+.++++..++|+|+..|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~pDvVv~~~~~-~----~~~~aa~~~giP~v~~~~~~~~------ 163 (412)
T 3otg_A 96 GLTPEQLSELPQIVFGRVIPQRVFDELQPVI-ERLRPDLVVQEISN-Y----GAGLAALKAGIPTICHGVGRDT------ 163 (412)
T ss_dssp TCCHHHHTTSHHHHHHTHHHHHHHHHHHHHH-HHHCCSEEEEETTC-H----HHHHHHHHHTCCEEEECCSCCC------
T ss_pred cCChhHhhHHHHHHHhccchHHHHHHHHHHH-HhcCCCEEEECchh-h----HHHHHHHHcCCCEEEecccccC------
Confidence 000000 00111111111 000011122222 23689999988522 1 1446667778999998888731
Q ss_pred cCCCchHHHHHHHHHHHHhh------------cCCEEEEcCHHHHHHHHHHhCCc-eEEeeCCCCCCcccCChhHHHHHH
Q 011979 146 LGRRSHFVSIYRWIEKYYGK------------MANGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELF 212 (473)
Q Consensus 146 ~~~~~~~~~~~~~~e~~~~~------------~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~~~f~~~~~~~~~~l~ 212 (473)
.......+.+++.+...+ .+|.+++.++...+......... ..+.+..... .... .
T Consensus 164 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~--- 232 (412)
T 3otg_A 164 --PDDLTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAE---QGDL---P--- 232 (412)
T ss_dssp --CSHHHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCCC---CCCC---C---
T ss_pred --chhhhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCCC---CCCC---C---
Confidence 111122333333333332 56778888877665555433222 1111111100 0000 0
Q ss_pred Hhh-hhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhh
Q 011979 213 CRL-NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 291 (473)
Q Consensus 213 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~ 291 (473)
.+ + ...++++.++++.|+.. .++.+.+.+++..+.+
T Consensus 233 -~~~~-----------------------------------~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~------ 269 (412)
T 3otg_A 233 -AWLS-----------------------------------SRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAG------ 269 (412)
T ss_dssp -GGGG-----------------------------------GSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHT------
T ss_pred -Cccc-----------------------------------cccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHc------
Confidence 00 0 11345677888999996 7778888777777654
Q ss_pred ccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEec
Q 011979 292 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLH 369 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~ 369 (473)
.++++++++++.. .+.++ ++ ++|.+.|+ + ++..+|..||++|.
T Consensus 270 -----------------------~~~~~~~~~g~~~~~~~l~------~~~~~v~~~~~-~---~~~~~l~~ad~~v~-- 314 (412)
T 3otg_A 270 -----------------------LDADVLVASGPSLDVSGLG------EVPANVRLESW-V---PQAALLPHVDLVVH-- 314 (412)
T ss_dssp -----------------------SSSEEEEECCSSCCCTTCC------CCCTTEEEESC-C---CHHHHGGGCSEEEE--
T ss_pred -----------------------CCCEEEEEECCCCChhhhc------cCCCcEEEeCC-C---CHHHHHhcCcEEEE--
Confidence 2456666655433 33332 23 69999988 4 69999999999997
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRN 441 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~ 441 (473)
.+ + +++++|||++|+|+|+++.+ +..+.+.+.++|++++ |+++|+++|.+++++ ++.+++|++
T Consensus 315 -~~-g---~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~ 385 (412)
T 3otg_A 315 -HG-G---SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE----ESYRAGARA 385 (412)
T ss_dssp -SC-C---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred -CC-c---hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC----HHHHHHHHH
Confidence 33 2 36999999999999997654 4677888888999985 689999999999995 899999999
Q ss_pred HHHHhccccchHHHHH
Q 011979 442 GTLEMGLSARWATEWE 457 (473)
Q Consensus 442 ~~~~~~~~~~w~~~~~ 457 (473)
.+++......|+...+
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (412)
T 3otg_A 386 VAAEIAAMPGPDEVVR 401 (412)
T ss_dssp HHHHHHHSCCHHHHHT
T ss_pred HHHHHhcCCCHHHHHH
Confidence 9999887777655443
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.81 E-value=2.8e-18 Score=175.21 Aligned_cols=305 Identities=17% Similarity=0.156 Sum_probs=184.4
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 011979 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (473)
Q Consensus 24 ~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 103 (473)
.|..|.++ ||+|.++|.... .........|++++.++.......+.....+ ...+++..+... ..++ +..+||
T Consensus 22 la~~L~~~-g~~V~~vg~~~g-~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~l-~~~~PD 94 (365)
T 3s2u_A 22 CAREFQAR-GYAVHWLGTPRG-IENDLVPKAGLPLHLIQVSGLRGKGLKSLVK---APLELLKSLFQA-LRVI-RQLRPV 94 (365)
T ss_dssp HHHHHHHT-TCEEEEEECSSS-THHHHTGGGTCCEEECC-----------------CHHHHHHHHHHH-HHHH-HHHCCS
T ss_pred HHHHHHhC-CCEEEEEECCch-HhhchhhhcCCcEEEEECCCcCCCCHHHHHH---HHHHHHHHHHHH-HHHH-HhcCCC
Confidence 44455554 999999985432 2234455667888887732221111111111 112222211111 1222 337899
Q ss_pred EEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHH
Q 011979 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQ 183 (473)
Q Consensus 104 vi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~ 183 (473)
+|+.+... .+. .+.+++++.++|++++-++.. .+ ...+++.+.++.+.+..+....
T Consensus 95 vVi~~g~~--~s~-p~~laA~~~~iP~vihe~n~~-------~G----------~~nr~l~~~a~~v~~~~~~~~~---- 150 (365)
T 3s2u_A 95 CVLGLGGY--VTG-PGGLAARLNGVPLVIHEQNAV-------AG----------TANRSLAPIARRVCEAFPDTFP---- 150 (365)
T ss_dssp EEEECSSS--THH-HHHHHHHHTTCCEEEEECSSS-------CC----------HHHHHHGGGCSEEEESSTTSSC----
T ss_pred EEEEcCCc--chH-HHHHHHHHcCCCEEEEecchh-------hh----------hHHHhhccccceeeeccccccc----
Confidence 99988742 222 355677788999998665551 11 2234566788988776553210
Q ss_pred HhCCceEEeeCCCC-CCcccCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEE
Q 011979 184 NWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVV 262 (473)
Q Consensus 184 ~~g~~~~vi~n~~~-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 262 (473)
...+..+..+... +.+... .....+.++++.+++
T Consensus 151 -~~~k~~~~g~pvr~~~~~~~--------------------------------------------~~~~~~~~~~~~ilv 185 (365)
T 3s2u_A 151 -ASDKRLTTGNPVRGELFLDA--------------------------------------------HARAPLTGRRVNLLV 185 (365)
T ss_dssp -C---CEECCCCCCGGGCCCT--------------------------------------------TSSCCCTTSCCEEEE
T ss_pred -CcCcEEEECCCCchhhccch--------------------------------------------hhhcccCCCCcEEEE
Confidence 0111222222211 111111 001134556777888
Q ss_pred EEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEE-EcCCCChHHHHHHHHHcCCC
Q 011979 263 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDKESYEEKIRRLRLK 341 (473)
Q Consensus 263 ~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~ 341 (473)
+.|+.+..+..+.+.+++..+.. ..++.+++ +|.+ +.+.+.+..++.+.
T Consensus 186 ~gGs~g~~~~~~~~~~al~~l~~----------------------------~~~~~vi~~~G~~-~~~~~~~~~~~~~~- 235 (365)
T 3s2u_A 186 LGGSLGAEPLNKLLPEALAQVPL----------------------------EIRPAIRHQAGRQ-HAEITAERYRTVAV- 235 (365)
T ss_dssp CCTTTTCSHHHHHHHHHHHTSCT----------------------------TTCCEEEEECCTT-THHHHHHHHHHTTC-
T ss_pred ECCcCCccccchhhHHHHHhccc----------------------------ccceEEEEecCcc-ccccccceeccccc-
Confidence 88999888888888888887743 13444444 4543 45566667777664
Q ss_pred cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc--------ccceecCCceEEeC
Q 011979 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI--------EELVKVDKNGLLFS 413 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~--------~e~i~~~~~G~~~~ 413 (473)
++.+.++ .++++++|..||++|+ ..| ++++.|+|++|+|+|..+.+.. ++.+.+.+.|++++
T Consensus 236 ~~~v~~f---~~dm~~~l~~aDlvI~----raG---~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~ 305 (365)
T 3s2u_A 236 EADVAPF---ISDMAAAYAWADLVIC----RAG---ALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLP 305 (365)
T ss_dssp CCEEESC---CSCHHHHHHHCSEEEE----CCC---HHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECC
T ss_pred ccccccc---hhhhhhhhccceEEEe----cCC---cchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEee
Confidence 6788888 6899999999999997 233 6799999999999998865432 24556667788874
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011979 414 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 414 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
++++|+++|.++++| ++.+++|++++++...
T Consensus 306 ~~~~~~~~L~~~i~~ll~d----~~~~~~m~~~a~~~~~ 340 (365)
T 3s2u_A 306 QKSTGAAELAAQLSEVLMH----PETLRSMADQARSLAK 340 (365)
T ss_dssp TTTCCHHHHHHHHHHHHHC----THHHHHHHHHHHHTCC
T ss_pred cCCCCHHHHHHHHHHHHCC----HHHHHHHHHHHHhcCC
Confidence 488999999999995 8999999999998763
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.80 E-value=7.4e-19 Score=181.56 Aligned_cols=269 Identities=14% Similarity=0.112 Sum_probs=176.5
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchH-HHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||+|++++.... ...+.++++..++|+++..++... +....++ ... ....+.+.+|.+++.|+..+
T Consensus 110 ~kPDvVi~~g~~~~--~~~~~~aa~~~~IPv~h~~ag~rs------~~~~~~~~~~~---~r~~~~~~a~~~~~~se~~~ 178 (396)
T 3dzc_A 110 EQPDVVLVHGDTAT--TFAASLAAYYQQIPVGHVEAGLRT------GNIYSPWPEEG---NRKLTAALTQYHFAPTDTSR 178 (396)
T ss_dssp HCCSEEEEETTSHH--HHHHHHHHHTTTCCEEEETCCCCC------SCTTSSTTHHH---HHHHHHHTCSEEEESSHHHH
T ss_pred cCCCEEEEECCchh--HHHHHHHHHHhCCCEEEEECCccc------cccccCCcHHH---HHHHHHHhcCEEECCCHHHH
Confidence 78999999985432 223556778889997754333210 0111111 111 12233568999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCCCCcccCChh------HHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhccccc
Q 011979 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLE------EKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGI 249 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~~~f~~~~~~------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (473)
+.+.+ .|++ +.++.|...+.+...... .+.+++.+++
T Consensus 179 ~~l~~-~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg--------------------------------- 224 (396)
T 3dzc_A 179 ANLLQ-ENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFP--------------------------------- 224 (396)
T ss_dssp HHHHH-TTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCT---------------------------------
T ss_pred HHHHH-cCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhC---------------------------------
Confidence 99887 5775 555554321211111000 0233444433
Q ss_pred ccccCCCCCeEEEEEeeccC-CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCC
Q 011979 250 DVFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPD 327 (473)
Q Consensus 250 ~~~~~~~~~~~i~~~G~~~~-~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~ 327 (473)
.++++++.++++.+|... .++++.+++|+..+.++ .|++.+++. |.++
T Consensus 225 --~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~---------------------------~~~~~~v~~~g~~~- 274 (396)
T 3dzc_A 225 --MLDASKKLILVTGHRRESFGGGFERICQALITTAEQ---------------------------HPECQILYPVHLNP- 274 (396)
T ss_dssp --TCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCBCH-
T ss_pred --ccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHh---------------------------CCCceEEEEeCCCh-
Confidence 012345545666655433 46789999999998773 688999886 5543
Q ss_pred hHHHHHHHHH-cCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-ccCcccccee
Q 011979 328 KESYEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVK 404 (473)
Q Consensus 328 ~~~l~~~~~~-~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i~ 404 (473)
.+++.+++ ++. ++|.+.++ ++..++..+|+.||++|. +| | + ...|||++|+|||++ +.++..|.+.
T Consensus 275 --~~~~~l~~~~~~~~~v~~~~~-lg~~~~~~l~~~ad~vv~---~S-G---g-~~~EA~a~G~PvV~~~~~~~~~e~v~ 343 (396)
T 3dzc_A 275 --NVREPVNKLLKGVSNIVLIEP-QQYLPFVYLMDRAHIILT---DS-G---G-IQEEAPSLGKPVLVMRETTERPEAVA 343 (396)
T ss_dssp --HHHHHHHHHTTTCTTEEEECC-CCHHHHHHHHHHCSEEEE---SC-S---G-GGTTGGGGTCCEEECCSSCSCHHHHH
T ss_pred --HHHHHHHHHHcCCCCEEEeCC-CCHHHHHHHHHhcCEEEE---CC-c---c-HHHHHHHcCCCEEEccCCCcchHHHH
Confidence 23444444 243 68999988 888899999999999988 45 2 2 348999999999999 6777788887
Q ss_pred cCCceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 405 VDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 405 ~~~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
.+ .+++++ |.+++++++..++++ ++.+++|++++.. +......+++++.+
T Consensus 344 ~G-~~~lv~~d~~~l~~ai~~ll~d----~~~~~~m~~~~~~----~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 344 AG-TVKLVGTNQQQICDALSLLLTD----PQAYQAMSQAHNP----YGDGKACQRIADIL 394 (396)
T ss_dssp HT-SEEECTTCHHHHHHHHHHHHHC----HHHHHHHHTSCCT----TCCSCHHHHHHHHH
T ss_pred cC-ceEEcCCCHHHHHHHHHHHHcC----HHHHHHHhhccCC----CcCChHHHHHHHHH
Confidence 66 567776 799999999999995 8889999887654 44445556655543
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-17 Score=173.25 Aligned_cols=268 Identities=15% Similarity=0.122 Sum_probs=175.5
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchH-HHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+||+|++++..... ..+.++++..++|+++...+.. .+...+++ .. ...+.+.+.+|.+++.|+..+
T Consensus 113 ~kPD~Vi~~gd~~~~--l~~~laA~~~~IPv~h~~aglr------s~~~~~~~p~~---~~r~~~~~~a~~~~~~se~~~ 181 (403)
T 3ot5_A 113 ENPDIVLVHGDTTTS--FAAGLATFYQQKMLGHVEAGLR------TWNKYSPFPEE---MNRQLTGVMADIHFSPTKQAK 181 (403)
T ss_dssp HCCSEEEEETTCHHH--HHHHHHHHHTTCEEEEESCCCC------CSCTTSSTTHH---HHHHHHHHHCSEEEESSHHHH
T ss_pred cCCCEEEEECCchhH--HHHHHHHHHhCCCEEEEECCcc------ccccccCCcHH---HHHHHHHHhcCEEECCCHHHH
Confidence 789999999854322 2345677788999764333220 01111111 11 122344567999999999999
Q ss_pred HHHHHHhCCc---eEEeeCCCCCCccc-CChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccC
Q 011979 179 HELAQNWGIK---ATVLYDQPPEFFHP-TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (473)
Q Consensus 179 ~~l~~~~g~~---~~vi~n~~~~~f~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+.+.+ .|.+ +.++.|...+.+.. .....+.+.+. .+
T Consensus 182 ~~l~~-~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~--------------------------------------~l- 221 (403)
T 3ot5_A 182 ENLLA-EGKDPATIFVTGNTAIDALKTTVQKDYHHPILE--------------------------------------NL- 221 (403)
T ss_dssp HHHHH-TTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHH--------------------------------------SC-
T ss_pred HHHHH-cCCCcccEEEeCCchHHHHHhhhhhhcchHHHH--------------------------------------hc-
Confidence 99987 4775 45554421111100 00000001111 12
Q ss_pred CCCCeEEEEEeeccC-CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCChHHHH
Q 011979 255 PNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYE 332 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~-~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~l~ 332 (473)
++++.+++++||... .++++.+++|+..+.++ .|++.+++. |.++ .++
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~---------------------------~~~~~~v~~~~~~~---~~~ 271 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVES---------------------------REDTELVYPMHLNP---AVR 271 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCSCH---HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHh---------------------------CCCceEEEecCCCH---HHH
Confidence 335556677777543 46789999999998773 688999987 4333 234
Q ss_pred HHHHH-cCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe-ccCccccceecCCce
Q 011979 333 EKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDKNG 409 (473)
Q Consensus 333 ~~~~~-~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~-~~~~~~e~i~~~~~G 409 (473)
+.+++ ++. ++|.++++ ++..++..+|+.||++|. +| |....||+++|+|+|++ +.++..|.+..+ +|
T Consensus 272 ~~l~~~~~~~~~v~l~~~-l~~~~~~~l~~~ad~vv~---~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~ 341 (403)
T 3ot5_A 272 EKAMAILGGHERIHLIEP-LDAIDFHNFLRKSYLVFT---DS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TL 341 (403)
T ss_dssp HHHHHHHTTCTTEEEECC-CCHHHHHHHHHHEEEEEE---CC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SE
T ss_pred HHHHHHhCCCCCEEEeCC-CCHHHHHHHHHhcCEEEE---CC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cE
Confidence 44444 344 69999998 888899999999999887 44 33448999999999999 677777887554 88
Q ss_pred EEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011979 410 LLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 466 (473)
Q Consensus 410 ~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 466 (473)
++++ |.+++++++.+++++ ++.+++|++++.. |.....++++++.+.+.
T Consensus 342 ~lv~~d~~~l~~ai~~ll~~----~~~~~~m~~~~~~----~g~~~aa~rI~~~l~~~ 391 (403)
T 3ot5_A 342 KLIGTNKENLIKEALDLLDN----KESHDKMAQAANP----YGDGFAANRILAAIKSH 391 (403)
T ss_dssp EECCSCHHHHHHHHHHHHHC----HHHHHHHHHSCCT----TCCSCHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHcC----HHHHHHHHhhcCc----ccCCcHHHHHHHHHHHH
Confidence 8886 899999999999985 8888889876554 44455666666655443
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.76 E-value=1.3e-16 Score=164.87 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=106.7
Q ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEE-EEEcCCCChHHHHHH
Q 011979 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEEK 334 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ivG~g~~~~~l~~~ 334 (473)
+++.++++.|+.. .++.+.+.+++..+.+ .+++++ +++|+|++.+.++
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~----------------------------~~~~~~~~~~G~~~~~~~l~-- 279 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGN----------------------------LPGWHLVLQIGRKVTPAELG-- 279 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTT----------------------------CTTEEEEEECC---CGGGGC--
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhc----------------------------CCCeEEEEEeCCCCChHHhc--
Confidence 4556888999998 5555555555544422 246777 5789887655442
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----cccceecCCce
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNG 409 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e~i~~~~~G 409 (473)
.+ ++|.+.|. ++.. .+|..||++|. .+ + +++++|||++|+|+|+++..+ ..+.+.+.+.|
T Consensus 280 ----~~~~~v~~~~~-~~~~---~~l~~ad~~v~---~~-G---~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g 344 (430)
T 2iyf_A 280 ----ELPDNVEVHDW-VPQL---AILRQADLFVT---HA-G---AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344 (430)
T ss_dssp ----SCCTTEEEESS-CCHH---HHHTTCSEEEE---CC-C---HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSE
T ss_pred ----cCCCCeEEEec-CCHH---HHhhccCEEEE---CC-C---ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCE
Confidence 23 68999987 6654 78999999887 32 2 369999999999999997644 45667777889
Q ss_pred EEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHH
Q 011979 410 LLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 454 (473)
Q Consensus 410 ~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 454 (473)
+.++ |.++++++|.+++++ ++.++++++.+++......|+.
T Consensus 345 ~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~ 389 (430)
T 2iyf_A 345 RKLATEEATADLLRETALALVDD----PEVARRLRRIQAEMAQEGGTRR 389 (430)
T ss_dssp EECCCC-CCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHCHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhcCcHHH
Confidence 9986 689999999999985 8888889998888765444443
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.72 E-value=1.1e-16 Score=163.97 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=101.4
Q ss_pred CCCCeEEEEEeeccCCC----------CHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcC
Q 011979 255 PNRPALVVSSTSWTPDE----------DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 324 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K----------~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~ 324 (473)
++++.++++.|+....+ .+..+++++..+ +++++++|+
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~~ 272 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL--------------------------------GFEVVVAVS 272 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG--------------------------------TCEEEECCC
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC--------------------------------CCEEEEEeC
Confidence 35666888999997555 345555554432 478888887
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec----cCccc
Q 011979 325 GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIE 400 (473)
Q Consensus 325 g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~----~~~~~ 400 (473)
++..+.++ .+ .++|.+.|+ + ++..++..||++|. .+ + +.++.|||++|+|+|+.. ..+..
T Consensus 273 ~~~~~~l~----~~-~~~v~~~~~-~---~~~~ll~~ad~~v~---~g-G---~~t~~Ea~~~G~P~v~~p~~~~q~~~a 336 (398)
T 4fzr_A 273 DKLAQTLQ----PL-PEGVLAAGQ-F---PLSAIMPACDVVVH---HG-G---HGTTLTCLSEGVPQVSVPVIAEVWDSA 336 (398)
T ss_dssp C------------C-CTTEEEESC-C---CHHHHGGGCSEEEE---CC-C---HHHHHHHHHTTCCEEECCCSGGGHHHH
T ss_pred Ccchhhhc----cC-CCcEEEeCc-C---CHHHHHhhCCEEEe---cC-C---HHHHHHHHHhCCCEEecCCchhHHHHH
Confidence 76543333 22 279999987 5 47889999999997 22 2 568999999999999954 44677
Q ss_pred cceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011979 401 ELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 456 (473)
Q Consensus 401 e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 456 (473)
+.+.+.+.|++++ |.++++++|.+++++ ++.++++++.++++.....|+...
T Consensus 337 ~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~ 392 (398)
T 4fzr_A 337 RLLHAAGAGVEVPWEQAGVESVLAACARIRDD----SSYVGNARRLAAEMATLPTPADIV 392 (398)
T ss_dssp HHHHHTTSEEECC-------CHHHHHHHHHHC----THHHHHHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHcCCEEecCcccCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 8888889999986 688999999999995 888999999999887667665443
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.70 E-value=2.8e-15 Score=152.71 Aligned_cols=350 Identities=13% Similarity=0.055 Sum_probs=191.2
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCC-----CCCcchhHH
Q 011979 3 RRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIP-----RGLPKVLKP 77 (473)
Q Consensus 3 ~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~ 77 (473)
.|++++++..+..|+..++...+..|.++ ||+|++++... ..+.....|+.++.++...... .........
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~-GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARR-GHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQ 78 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHH
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhC-CCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHH
Confidence 35567767777677777888888899887 99999999532 1223345688888877311000 000111111
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhh-------cCCC
Q 011979 78 VLL-LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS-------LGRR 149 (473)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-------~~~~ 149 (473)
+.. +.+.......-+...+ +..+||+|+++++.. . .+.+++...++|+++..|+++....... ....
T Consensus 79 ~~~~~~~~~~~~~~~l~~~l-~~~~pD~Vi~d~~~~---~-~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (402)
T 3ia7_A 79 LHLVYVRENVAILRAAEEAL-GDNPPDLVVYDVFPF---I-AGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQR 153 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCCSEEEEESTTH---H-HHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCCEEEECchHH---H-HHHHHHHhhCCCEEEEecccccCcccccccccccccccc
Confidence 111 2222222222222333 337899999985222 1 2456667788999998877642110000 0000
Q ss_pred ch--HHHHHHHHHHHHhhc-------------CCEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHh
Q 011979 150 SH--FVSIYRWIEKYYGKM-------------ANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCR 214 (473)
Q Consensus 150 ~~--~~~~~~~~e~~~~~~-------------ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~ 214 (473)
.+ ...+..++.+...+. .|..++.+....+.....++.+ +.+.|+.- .... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~vGp~~--~~~~--~------- 220 (402)
T 3ia7_A 154 HPADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDER--FAFVGPTL--TGRD--G------- 220 (402)
T ss_dssp CGGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTT--EEECCCCC--CC------------
T ss_pred ChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCC--eEEeCCCC--CCcc--c-------
Confidence 01 111222222222111 1333333332222221112222 11222110 0000 0
Q ss_pred hhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccC
Q 011979 215 LNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 294 (473)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~ 294 (473)
.. .-....++++.++++.|+....+ .+.+.+.+..+.+
T Consensus 221 -------------------------~~-------~~~~~~~~~~~v~v~~G~~~~~~-~~~~~~~~~~~~~--------- 258 (402)
T 3ia7_A 221 -------------------------QP-------GWQPPRPDAPVLLVSLGNQFNEH-PEFFRACAQAFAD--------- 258 (402)
T ss_dssp --------------------------C-------CCCCSSTTCCEEEEECCSCSSCC-HHHHHHHHHHHTT---------
T ss_pred -------------------------CC-------CCcccCCCCCEEEEECCCCCcch-HHHHHHHHHHHhc---------
Confidence 00 00011345677888999987664 2333333333322
Q ss_pred CCchhhHHHhhhccCccccCCCEEEE-EEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCC
Q 011979 295 DSTNEEVFLKEISDGKQYLYPRLLFI-ITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS 373 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~-ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~ 373 (473)
.+ ++++ ++|++++.+.+++ + .++|.+.|+ ++.. .++..||++|. .+
T Consensus 259 -------------------~~-~~~~~~~g~~~~~~~~~~----~-~~~v~~~~~-~~~~---~ll~~ad~~v~---~~- 305 (402)
T 3ia7_A 259 -------------------TP-WHVVMAIGGFLDPAVLGP----L-PPNVEAHQW-IPFH---SVLAHARACLT---HG- 305 (402)
T ss_dssp -------------------SS-CEEEEECCTTSCGGGGCS----C-CTTEEEESC-CCHH---HHHTTEEEEEE---CC-
T ss_pred -------------------CC-cEEEEEeCCcCChhhhCC----C-CCcEEEecC-CCHH---HHHhhCCEEEE---CC-
Confidence 23 4444 4676655443332 1 169999987 6554 89999999987 33
Q ss_pred CCCCcHHHHHHHhcCCcEEEecc-----CccccceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011979 374 GLDLPMKVVDMFGCGLPVCAVSY-----SCIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 444 (473)
Q Consensus 374 ~e~~p~kv~Eama~G~PvI~~~~-----~~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 444 (473)
| ..+++|||++|+|+|+... .+..+.+.+.+.|..++ +.+++++++.+++++ ++.++++++.+.
T Consensus 306 G---~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~----~~~~~~~~~~~~ 378 (402)
T 3ia7_A 306 T---TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD----SAVRERVRRMQR 378 (402)
T ss_dssp C---HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred C---HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHH
Confidence 2 2588999999999996644 46677778888999885 689999999999995 888888988888
Q ss_pred HhccccchHHHH
Q 011979 445 EMGLSARWATEW 456 (473)
Q Consensus 445 ~~~~~~~w~~~~ 456 (473)
++.....++...
T Consensus 379 ~~~~~~~~~~~~ 390 (402)
T 3ia7_A 379 DILSSGGPARAA 390 (402)
T ss_dssp HHHTSCHHHHHH
T ss_pred HHhhCChHHHHH
Confidence 876555544433
No 37
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.68 E-value=5.8e-16 Score=157.84 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCCCeEEEEEeeccCCCCH-HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDF-GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~-~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
++++.++++.|+....++. ..+++++... . ..|+++++++|+++..+.++
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~---------------------------~~p~~~~v~~~~~~~~~~l~- 266 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-T---------------------------ELPGVEAVIAVPPEHRALLT- 266 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-H---------------------------TSTTEEEEEECCGGGGGGCT-
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-c---------------------------cCCCeEEEEEECCcchhhcc-
Confidence 4566688888998765444 6666666655 4 35789999999876544332
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec----cCccccceecCCc
Q 011979 334 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVKVDKN 408 (473)
Q Consensus 334 ~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~----~~~~~e~i~~~~~ 408 (473)
++ ++|.+.|+ ++.. .++..||++|. .+ -+.+++|||++|+|+|+.. ..+..+.+.+.+.
T Consensus 267 -----~~~~~v~~~~~-~~~~---~ll~~ad~~v~---~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~ 330 (391)
T 3tsa_A 267 -----DLPDNARIAES-VPLN---LFLRTCELVIC---AG----GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGA 330 (391)
T ss_dssp -----TCCTTEEECCS-CCGG---GTGGGCSEEEE---CC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTS
T ss_pred -----cCCCCEEEecc-CCHH---HHHhhCCEEEe---CC----CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCC
Confidence 23 69999987 6654 45699999997 22 2358999999999999964 3456677888889
Q ss_pred eEEeCC------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011979 409 GLLFSS------SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 457 (473)
Q Consensus 409 G~~~~~------~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 457 (473)
|++++. .+++++++.+++++ ++.++++++.+.++.....|+...+
T Consensus 331 g~~~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 3tsa_A 331 GICLPDEQAQSDHEQFTDSIATVLGD----TGFAAAAIKLSDEITAMPHPAALVR 381 (391)
T ss_dssp EEECCSHHHHTCHHHHHHHHHHHHTC----THHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred EEecCcccccCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999854 89999999999985 8889999999988776666654433
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.67 E-value=1.5e-15 Score=155.52 Aligned_cols=154 Identities=18% Similarity=0.079 Sum_probs=109.9
Q ss_pred CCCCCeEEEEEeeccCC-CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 254 KPNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 254 ~~~~~~~i~~~G~~~~~-K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
.++++.++++.|++... ++.+.+.++++.+.+ .+++++++|+++..+.++
T Consensus 229 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~-----------------------------~~~~~v~~~g~~~~~~l~ 279 (398)
T 3oti_A 229 VPARPEVAITMGTIELQAFGIGAVEPIIAAAGE-----------------------------VDADFVLALGDLDISPLG 279 (398)
T ss_dssp CCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHT-----------------------------SSSEEEEECTTSCCGGGC
T ss_pred CCCCCEEEEEcCCCccccCcHHHHHHHHHHHHc-----------------------------CCCEEEEEECCcChhhhc
Confidence 34567788889999655 355555555555543 257889998876544333
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe----ccCccc--cceec
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV----SYSCIE--ELVKV 405 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~----~~~~~~--e~i~~ 405 (473)
++ +||.+.|+ + ++..++..||++|. .+ -+.++.|||++|+|+|+. +..+.. +.+.+
T Consensus 280 ------~~~~~v~~~~~-~---~~~~ll~~ad~~v~---~~----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~ 342 (398)
T 3oti_A 280 ------TLPRNVRAVGW-T---PLHTLLRTCTAVVH---HG----GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR 342 (398)
T ss_dssp ------SCCTTEEEESS-C---CHHHHHTTCSEEEE---CC----CHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHH
T ss_pred ------cCCCcEEEEcc-C---CHHHHHhhCCEEEE---CC----CHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHH
Confidence 23 69999987 4 57788999999997 22 235899999999999994 456777 88888
Q ss_pred CCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011979 406 DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 457 (473)
Q Consensus 406 ~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 457 (473)
.+.|+.++..+.-.+.+.+++++ ++.++++++.+.++.....|+...+
T Consensus 343 ~g~g~~~~~~~~~~~~l~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (398)
T 3oti_A 343 RGIGLVSTSDKVDADLLRRLIGD----ESLRTAAREVREEMVALPTPAETVR 390 (398)
T ss_dssp HTSEEECCGGGCCHHHHHHHHHC----HHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCCEEeeCCCCCCHHHHHHHHcC----HHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999986322223333377774 8999999999998776666654443
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.65 E-value=3e-14 Score=146.32 Aligned_cols=346 Identities=13% Similarity=0.083 Sum_probs=188.2
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEeecCCCCCCC-----CcchhHH
Q 011979 3 RRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRG-----LPKVLKP 77 (473)
Q Consensus 3 ~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-----~~~~~~~ 77 (473)
+|++++++..+..|+..++...+..|.++ ||+|++++... ..+.....|+.++.++........ .......
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~-Gh~V~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRR-GHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVR 94 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHT-TCEEEEEECGG---GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHH
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHC-CCEEEEEeCHH---HHHHHHhcCCEEEeccccccccccchhhccccHHHH
Confidence 46778877777778888888899999997 99999999432 223344568888888732110000 0000111
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhCCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhh-------hhhcCCC
Q 011979 78 VLL-LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLL-------SLSLGRR 149 (473)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------~~~~~~~ 149 (473)
+.. +.+.......-+...+ +..+||+|+++++... .+.+++...++|+++..+++..... .......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~l-~~~~PDlVi~d~~~~~----~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T 3rsc_A 95 PHLMYLRENVSVLRATAEAL-DGDVPDLVLYDDFPFI----AGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGTI 169 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SSSCCSEEEEESTTHH----HHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCCEEEECchhhh----HHHHHHHHhCCCEEEEEecccccCccccccccccccccC
Confidence 111 1111112122222333 3378999998743222 2456677789999998877631100 0000000
Q ss_pred ch--HHHHHHHHHHHHhhc-------------CCEEEEcCHHHHHHHHHHhCCceEEeeCCCCCCcccCChhHHHHHHHh
Q 011979 150 SH--FVSIYRWIEKYYGKM-------------ANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCR 214 (473)
Q Consensus 150 ~~--~~~~~~~~e~~~~~~-------------ad~vi~vS~~~~~~l~~~~g~~~~vi~n~~~~~f~~~~~~~~~~l~~~ 214 (473)
.+ .......+.+...+. ++..++.+....+.....++.+ +.+.|+. +... .
T Consensus 170 ~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~vGp~--~~~~-~--------- 235 (415)
T 3rsc_A 170 DPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDR--FVFVGPC--FDDR-R--------- 235 (415)
T ss_dssp CGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTT--EEECCCC--CCCC-G---------
T ss_pred ChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCc--eEEeCCC--CCCc-c---------
Confidence 01 111111222211111 1333333222211111111111 1111111 0000 0
Q ss_pred hhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccC
Q 011979 215 LNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 294 (473)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~ 294 (473)
+...+ ....++++.++++.|+...... +.+...+..+.+
T Consensus 236 ------------------------~~~~~-------~~~~~~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~--------- 274 (415)
T 3rsc_A 236 ------------------------FLGEW-------TRPADDLPVVLVSLGTTFNDRP-GFFRDCARAFDG--------- 274 (415)
T ss_dssp ------------------------GGCCC-------CCCSSCCCEEEEECTTTSCCCH-HHHHHHHHHHTT---------
T ss_pred ------------------------cCcCc-------cccCCCCCEEEEECCCCCCChH-HHHHHHHHHHhc---------
Confidence 00000 0113456778888899865432 223223332222
Q ss_pred CCchhhHHHhhhccCccccCCCEEEEE-EcCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCC
Q 011979 295 DSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS 372 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s 372 (473)
.+ +++++ +|.+++.+.++ .+ ++|.+.++ ++.. .++..||++|. .+
T Consensus 275 -------------------~~-~~~v~~~g~~~~~~~l~------~~~~~v~~~~~-~~~~---~ll~~ad~~v~---~~ 321 (415)
T 3rsc_A 275 -------------------QP-WHVVMTLGGQVDPAALG------DLPPNVEAHRW-VPHV---KVLEQATVCVT---HG 321 (415)
T ss_dssp -------------------SS-CEEEEECTTTSCGGGGC------CCCTTEEEESC-CCHH---HHHHHEEEEEE---SC
T ss_pred -------------------CC-cEEEEEeCCCCChHHhc------CCCCcEEEEec-CCHH---HHHhhCCEEEE---CC
Confidence 23 66666 77665554433 23 69999987 6544 88999999997 22
Q ss_pred CCCCCcHHHHHHHhcCCcEEEec----cCccccceecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011979 373 SGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 444 (473)
Q Consensus 373 ~~e~~p~kv~Eama~G~PvI~~~----~~~~~e~i~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 444 (473)
| ..+++|||++|+|+|+.. .....+.+.+.+.|..+. +.++++++|.+++++ ++.++++++.+.
T Consensus 322 -G---~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~ 393 (415)
T 3rsc_A 322 -G---MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD----PALLARVEAMRG 393 (415)
T ss_dssp -C---HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC----HHHHHHHHHHHH
T ss_pred -c---HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHH
Confidence 2 258899999999999954 444667777778888875 689999999999995 888888888888
Q ss_pred HhccccchH
Q 011979 445 EMGLSARWA 453 (473)
Q Consensus 445 ~~~~~~~w~ 453 (473)
++.....++
T Consensus 394 ~~~~~~~~~ 402 (415)
T 3rsc_A 394 HVRRAGGAA 402 (415)
T ss_dssp HHHHSCHHH
T ss_pred HHHhcCHHH
Confidence 766444443
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.57 E-value=2.6e-13 Score=137.98 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=109.4
Q ss_pred CCCCeEEEEEeeccCC-------CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC
Q 011979 255 PNRPALVVSSTSWTPD-------EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~-------K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 327 (473)
++++.++++.|+.... +.+..+++++... +++++++++++.
T Consensus 208 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~--------------------------------~~~~~~~~g~~~ 255 (384)
T 2p6p_A 208 DTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW--------------------------------DVELIVAAPDTV 255 (384)
T ss_dssp CSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT--------------------------------TCEEEEECCHHH
T ss_pred CCCCEEEEECCCCCccccccccHHHHHHHHHHHhcC--------------------------------CcEEEEEeCCCC
Confidence 3456688999999875 5566777776542 477887765432
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccce
Q 011979 328 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELV 403 (473)
Q Consensus 328 ~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i 403 (473)
.+.++ .+. ++|.+ |. ++ ...+|..||++|. .+ | +++++|||++|+|+|+.+.. ...+.+
T Consensus 256 ~~~l~----~~~-~~v~~-~~-~~---~~~~l~~~d~~v~---~~-G---~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~ 318 (384)
T 2p6p_A 256 AEALR----AEV-PQARV-GW-TP---LDVVAPTCDLLVH---HA-G---GVSTLTGLSAGVPQLLIPKGSVLEAPARRV 318 (384)
T ss_dssp HHHHH----HHC-TTSEE-EC-CC---HHHHGGGCSEEEE---CS-C---TTHHHHHHHTTCCEEECCCSHHHHHHHHHH
T ss_pred HHhhC----CCC-CceEE-cC-CC---HHHHHhhCCEEEe---CC-c---HHHHHHHHHhCCCEEEccCcccchHHHHHH
Confidence 22222 221 58888 76 65 4668899999998 32 1 34899999999999999754 366667
Q ss_pred ecCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011979 404 KVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 465 (473)
Q Consensus 404 ~~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 465 (473)
.+.+.|+.++ +.++++++|.+++++ ++.++++++.+.++..... .+..-+.+.+++.
T Consensus 319 ~~~g~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 319 ADYGAAIALLPGEDSTEAIADSCQELQAK----DTYARRAQDLSREISGMPL-PATVVTALEQLAH 379 (384)
T ss_dssp HHHTSEEECCTTCCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHH
T ss_pred HHCCCeEecCcCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHhh
Confidence 7778899885 689999999999995 8888888888888763332 2333333444443
No 41
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.46 E-value=2.4e-11 Score=125.28 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=100.0
Q ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEE-EEEcCCCChHHHHH
Q 011979 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEE 333 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ivG~g~~~~~l~~ 333 (473)
++++.++++.|+.. ....+.+.+++..+.+ .++++ +++|.+.+.+.++
T Consensus 253 ~~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~-----------------------------~~~~~~~~~g~~~~~~~~~- 301 (424)
T 2iya_A 253 DGRPVLLIALGSAF-TDHLDFYRTCLSAVDG-----------------------------LDWHVVLSVGRFVDPADLG- 301 (424)
T ss_dssp SSCCEEEEECCSSS-CCCHHHHHHHHHHHTT-----------------------------CSSEEEEECCTTSCGGGGC-
T ss_pred CCCCEEEEEcCCCC-cchHHHHHHHHHHHhc-----------------------------CCcEEEEEECCcCChHHhc-
Confidence 34667888889987 3344444333433322 34666 5578766544332
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCCc
Q 011979 334 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKN 408 (473)
Q Consensus 334 ~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~~ 408 (473)
.+ ++|.+.+. +|+. .+|..||++|. . .| .++++||+++|+|+|+.... ...+.+.+.+.
T Consensus 302 -----~~~~~v~~~~~-~~~~---~~l~~~d~~v~---~-~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~ 365 (424)
T 2iya_A 302 -----EVPPNVEVHQW-VPQL---DILTKASAFIT---H-AG---MGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGL 365 (424)
T ss_dssp -----SCCTTEEEESS-CCHH---HHHTTCSEEEE---C-CC---HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTS
T ss_pred -----cCCCCeEEecC-CCHH---HHHhhCCEEEE---C-Cc---hhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCC
Confidence 23 68999986 7654 68999999886 2 22 36999999999999999753 34556667788
Q ss_pred eEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 409 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 409 G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
|+.++ +.++++++|.+++++ ++.++++++.+.+..
T Consensus 366 g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~ 404 (424)
T 2iya_A 366 GRHIPRDQVTAEKLREAVLAVASD----PGVAERLAAVRQEIR 404 (424)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred EEEcCcCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHH
Confidence 98885 689999999999985 777778877777755
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.45 E-value=1.4e-12 Score=134.12 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=157.1
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.+||+|++++.... ++ . .++++..++|+++...+.. ......... .....+.+.+|.+++.|+..++
T Consensus 93 ~kPD~Vlv~gd~~~-~~-a-alaA~~~~IPv~h~eaglr-------s~~~~~pee---~nR~~~~~~a~~~~~~te~~~~ 159 (385)
T 4hwg_A 93 EKPDAVLFYGDTNS-CL-S-AIAAKRRKIPIFHMEAGNR-------CFDQRVPEE---INRKIIDHISDVNITLTEHARR 159 (385)
T ss_dssp HCCSEEEEESCSGG-GG-G-HHHHHHTTCCEEEESCCCC-------CSCTTSTHH---HHHHHHHHHCSEEEESSHHHHH
T ss_pred cCCcEEEEECCchH-HH-H-HHHHHHhCCCEEEEeCCCc-------cccccCcHH---HHHHHHHhhhceeecCCHHHHH
Confidence 78999999985432 22 2 4566778999765444331 111110011 1123344679999999999999
Q ss_pred HHHHHhCCc---eEEeeCCCCCCcccC-ChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCC
Q 011979 180 ELAQNWGIK---ATVLYDQPPEFFHPT-SLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (473)
Q Consensus 180 ~l~~~~g~~---~~vi~n~~~~~f~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (473)
.+.+ .|.+ +.++.|...+.+... +...+.+++++++ +++
T Consensus 160 ~l~~-~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lg------------------------------------l~~ 202 (385)
T 4hwg_A 160 YLIA-EGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLS------------------------------------LTP 202 (385)
T ss_dssp HHHH-TTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTT------------------------------------CCT
T ss_pred HHHH-cCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcC------------------------------------CCc
Confidence 9887 4775 444433211111110 0112233344443 222
Q ss_pred CCCeEEEEEeecc---CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 256 NRPALVVSSTSWT---PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~~~---~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
++.+++..|+.. ..+++..+++|+..+.++ . ++.+++... | .++
T Consensus 203 -~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~---------------------------~-~~~vv~p~~-p---~~~ 249 (385)
T 4hwg_A 203 -KQYFLISSHREENVDVKNNLKELLNSLQMLIKE---------------------------Y-NFLIIFSTH-P---RTK 249 (385)
T ss_dssp -TSEEEEEECCC-----CHHHHHHHHHHHHHHHH---------------------------H-CCEEEEEEC-H---HHH
T ss_pred -CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhc---------------------------C-CeEEEEECC-h---HHH
Confidence 455677777643 346788999999988763 3 567666543 3 356
Q ss_pred HHHHHc-C-C---CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC-ccccceecC
Q 011979 333 EKIRRL-R-L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVD 406 (473)
Q Consensus 333 ~~~~~~-~-l---~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~-~~~e~i~~~ 406 (473)
+.++++ + + ++|.+.++ ++..++..+++.||+++. +|. ....||+++|+|||+.... +..|.+..+
T Consensus 250 ~~l~~~~~~~~~~~~v~l~~~-lg~~~~~~l~~~adlvvt---~SG-----gv~~EA~alG~Pvv~~~~~ter~e~v~~G 320 (385)
T 4hwg_A 250 KRLEDLEGFKELGDKIRFLPA-FSFTDYVKLQMNAFCILS---DSG-----TITEEASILNLPALNIREAHERPEGMDAG 320 (385)
T ss_dssp HHHHTSGGGGGTGGGEEECCC-CCHHHHHHHHHHCSEEEE---CCT-----THHHHHHHTTCCEEECSSSCSCTHHHHHT
T ss_pred HHHHHHHHHhcCCCCEEEEcC-CCHHHHHHHHHhCcEEEE---CCc-----cHHHHHHHcCCCEEEcCCCccchhhhhcC
Confidence 666665 4 2 58999988 888899999999999996 452 2579999999999998643 356766554
Q ss_pred CceEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011979 407 KNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 444 (473)
Q Consensus 407 ~~G~~~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 444 (473)
++++++ |.+++++++..++++ +..+++|++++.
T Consensus 321 -~~~lv~~d~~~i~~ai~~ll~d----~~~~~~m~~~~~ 354 (385)
T 4hwg_A 321 -TLIMSGFKAERVLQAVKTITEE----HDNNKRTQGLVP 354 (385)
T ss_dssp -CCEECCSSHHHHHHHHHHHHTT----CBTTBCCSCCCH
T ss_pred -ceEEcCCCHHHHHHHHHHHHhC----hHHHHHhhccCC
Confidence 778886 899999999999986 444444544333
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.36 E-value=1.6e-10 Score=120.07 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=106.7
Q ss_pred CCCCeEEEEEeeccCC-----CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChH
Q 011979 255 PNRPALVVSSTSWTPD-----EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 329 (473)
Q Consensus 255 ~~~~~~i~~~G~~~~~-----K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~ 329 (473)
++++.++++.|+.... +.+..+++++..+ +++++++++++..+
T Consensus 265 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~g~~~~~ 312 (441)
T 2yjn_A 265 PERRRVCLTLGISSRENSIGQVSIEELLGAVGDV--------------------------------DAEIIATFDAQQLE 312 (441)
T ss_dssp CSSCEEEEEC----------CCSTTTTHHHHHTS--------------------------------SSEEEECCCTTTTS
T ss_pred CCCCEEEEECCCCcccccChHHHHHHHHHHHHcC--------------------------------CCEEEEEECCcchh
Confidence 4567788899998754 7788888887653 46788877665433
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----cccccee
Q 011979 330 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVK 404 (473)
Q Consensus 330 ~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~ 404 (473)
.++ ++ ++|.+.++ ++. ..+|..||++|. . .| +.+++|||++|+|+|+.+.. ...+.+.
T Consensus 313 ~l~------~~~~~v~~~~~-~~~---~~ll~~ad~~V~---~-~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~ 375 (441)
T 2yjn_A 313 GVA------NIPDNVRTVGF-VPM---HALLPTCAATVH---H-GG---PGSWHTAAIHGVPQVILPDGWDTGVRAQRTQ 375 (441)
T ss_dssp SCS------SCCSSEEECCS-CCH---HHHGGGCSEEEE---C-CC---HHHHHHHHHTTCCEEECCCSHHHHHHHHHHH
T ss_pred hhc------cCCCCEEEecC-CCH---HHHHhhCCEEEE---C-CC---HHHHHHHHHhCCCEEEeCCcccHHHHHHHHH
Confidence 221 23 68999986 765 467899999997 2 22 46899999999999999763 3566777
Q ss_pred cCCceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHH
Q 011979 405 VDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 455 (473)
Q Consensus 405 ~~~~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 455 (473)
+.+.|+.++ +.++++++|.+++++ ++.++++++.+.+......++..
T Consensus 376 ~~g~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~ 426 (441)
T 2yjn_A 376 EFGAGIALPVPELTPDQLRESVKRVLDD----PAHRAGAARMRDDMLAEPSPAEV 426 (441)
T ss_dssp HHTSEEECCTTTCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HcCCEEEcccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHcCCCHHHH
Confidence 778899885 689999999999985 88888898888887655554443
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.24 E-value=1.8e-09 Score=111.01 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCCCeEEEEEeecc-CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHH
Q 011979 255 PNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (473)
Q Consensus 255 ~~~~~~i~~~G~~~-~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~ 333 (473)
++++.++++.|+.. ..+....+++++..+ ++++++.+++...+.
T Consensus 219 ~~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~--------------------------------~~~vv~~~g~~~~~~--- 263 (404)
T 3h4t_A 219 AGSPPVYVGFGSGPAPAEAARVAIEAVRAQ--------------------------------GRRVVLSSGWAGLGR--- 263 (404)
T ss_dssp TSSCCEEECCTTSCCCTTHHHHHHHHHHHT--------------------------------TCCEEEECTTTTCCC---
T ss_pred cCCCeEEEECCCCCCcHHHHHHHHHHHHhC--------------------------------CCEEEEEeCCccccc---
Confidence 34566888889987 555566666666653 356666654332211
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----cccceecCCc
Q 011979 334 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKN 408 (473)
Q Consensus 334 ~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e~i~~~~~ 408 (473)
.+. +||.+.++ +|. ..++..+|++|. .+ | ..++.||+++|+|+|+....+ ..+.+.+.+.
T Consensus 264 ----~~~~~~v~~~~~-~~~---~~ll~~~d~~v~---~g-G---~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~ 328 (404)
T 3h4t_A 264 ----IDEGDDCLVVGE-VNH---QVLFGRVAAVVH---HG-G---AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGV 328 (404)
T ss_dssp ----SSCCTTEEEESS-CCH---HHHGGGSSEEEE---CC-C---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTS
T ss_pred ----ccCCCCEEEecC-CCH---HHHHhhCcEEEE---CC-c---HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCC
Confidence 223 69999976 664 567789999997 22 2 248899999999999986433 3345666677
Q ss_pred eEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011979 409 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 448 (473)
Q Consensus 409 G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 448 (473)
|...+ +.+++++++.++++ ++.++++++.+.++..
T Consensus 329 g~~l~~~~~~~~~l~~ai~~ll~-----~~~~~~~~~~~~~~~~ 367 (404)
T 3h4t_A 329 GVAHDGPTPTVESLSAALATALT-----PGIRARAAAVAGTIRT 367 (404)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTS-----HHHHHHHHHHHTTCCC
T ss_pred EeccCcCCCCHHHHHHHHHHHhC-----HHHHHHHHHHHHHHhh
Confidence 88864 68999999999976 4667777777776553
No 45
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.23 E-value=1.8e-09 Score=111.13 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=94.8
Q ss_pred CCeEEEEEeecc-CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCChHHHHHH
Q 011979 257 RPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEEK 334 (473)
Q Consensus 257 ~~~~i~~~G~~~-~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~l~~~ 334 (473)
++.++++.|+.. ..+..+.+++++..+ +.+++++ |.+... .
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~g~~~~~--~--- 280 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH--------------------------------GRRVILSRGWADLV--L--- 280 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT--------------------------------TCCEEECTTCTTCC--C---
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC--------------------------------CCeEEEEeCCCccc--c---
Confidence 455888889984 666667777777653 2345554 765422 0
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----cccceecCCce
Q 011979 335 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNG 409 (473)
Q Consensus 335 ~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e~i~~~~~G 409 (473)
..+ ++|.+.+. +|.. .++..||++|. .+ | .++++||+++|+|+|+....+ ..+.+.+.+.|
T Consensus 281 ---~~~~~~v~~~~~-~~~~---~~l~~~d~~v~---~~-G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g 346 (415)
T 1iir_A 281 ---PDDGADCFAIGE-VNHQ---VLFGRVAAVIH---HG-G---AGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVG 346 (415)
T ss_dssp ---SSCGGGEEECSS-CCHH---HHGGGSSEEEE---CC-C---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSE
T ss_pred ---cCCCCCEEEeCc-CChH---HHHhhCCEEEe---CC-C---hhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCc
Confidence 234 68999976 8764 45799999997 22 2 369999999999999986543 55667777889
Q ss_pred EEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 410 LLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 410 ~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+..+ +.++++++|.++ ++ ++.++++++.+.+..
T Consensus 347 ~~~~~~~~~~~~l~~~i~~l-~~----~~~~~~~~~~~~~~~ 383 (415)
T 1iir_A 347 VAHDGPIPTFDSLSAALATA-LT----PETHARATAVAGTIR 383 (415)
T ss_dssp EECSSSSCCHHHHHHHHHHH-TS----HHHHHHHHHHHHHSC
T ss_pred ccCCcCCCCHHHHHHHHHHH-cC----HHHHHHHHHHHHHHh
Confidence 8875 689999999999 74 777777777777644
No 46
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.19 E-value=8.3e-09 Score=110.94 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=127.8
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEE--EEcCCC-ChHHHHHHHH
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI--ITGKGP-DKESYEEKIR 336 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ivG~g~-~~~~l~~~~~ 336 (473)
+++..++ ..|..+.+++++..+.++ .|+..++ ++|+++ ....+.+.+.
T Consensus 443 ~Fg~fn~--~~Ki~p~~l~~WarIL~~---------------------------vP~s~L~l~~~g~~~g~~~~~~~~~~ 493 (631)
T 3q3e_A 443 NIGIAST--TMKLNPYFLEALKAIRDR---------------------------AKVKVHFHFALGQSNGITHPYVERFI 493 (631)
T ss_dssp EEEEEEC--STTCCHHHHHHHHHHHHH---------------------------CSSEEEEEEEESSCCGGGHHHHHHHH
T ss_pred EEEECCc--cccCCHHHHHHHHHHHHh---------------------------CCCcEEEEEecCCCchhhHHHHHHHH
Confidence 4555555 468889999999998875 5776654 367432 2334445566
Q ss_pred HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccccee------cCCce
Q 011979 337 RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK------VDKNG 409 (473)
Q Consensus 337 ~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e~i~------~~~~G 409 (473)
+.|+ ++|.|.|. ++.++....|+.+|+++- ++.. +-|++.+|||+||+|||+........-+. -|-.+
T Consensus 494 ~~GI~~Rv~F~g~-~p~~e~la~y~~aDIfLD---pfpy-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE 568 (631)
T 3q3e_A 494 KSYLGDSATAHPH-SPYHQYLRILHNCDMMVN---PFPF-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPE 568 (631)
T ss_dssp HHHHGGGEEEECC-CCHHHHHHHHHTCSEEEC---CSSS-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCG
T ss_pred HcCCCccEEEcCC-CCHHHHHHHHhcCcEEEe---CCcc-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCc
Confidence 7788 79999998 999999999999999998 3433 34899999999999999976555443332 24445
Q ss_pred E-EeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-c---chHHHHHHHHHHHHHHHhh
Q 011979 410 L-LFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-A---RWATEWEEHAKPLITEVIS 469 (473)
Q Consensus 410 ~-~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~w~~~~~~~~~~~~~~~~~ 469 (473)
+ +..|.+++++...++..+ ++.+.+++++.++.... . .|...+++.+..++.+..+
T Consensus 569 ~LIA~d~eeYv~~Av~La~D----~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 569 WLIANTVDEYVERAVRLAEN----HQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp GGEESSHHHHHHHHHHHHHC----HHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHHH
T ss_pred ceecCCHHHHHHHHHHHhCC----HHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3 778999999999999995 99999999999886522 1 4567778877777776543
No 47
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.14 E-value=4.2e-10 Score=114.38 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=94.1
Q ss_pred CCCCCeEEEEEeeccCCCC-HHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 254 KPNRPALVVSSTSWTPDED-FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 254 ~~~~~~~i~~~G~~~~~K~-~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
.++++.++++.|+....++ ...+.+++..+.+ .+..+++.+.+...+..
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~-----------------------------~~~~~v~~~~~~~~~~~- 283 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVAD-----------------------------VDAEFVLTLGGGDLALL- 283 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGG-----------------------------SSSEEEEECCTTCCCCC-
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhc-----------------------------cCceEEEEecCcccccc-
Confidence 4456668888888765543 3444444444433 34566666654432211
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCC
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDK 407 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~ 407 (473)
..+ +|+.+.+. +|+ ..+|..+|++|. . .| .++++||+++|+|+|+.... ...+.+.+.+
T Consensus 284 -----~~~~~~v~~~~~-~p~---~~lL~~~~~~v~---h-~G---~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G 347 (400)
T 4amg_A 284 -----GELPANVRVVEW-IPL---GALLETCDAIIH---H-GG---SGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLG 347 (400)
T ss_dssp -----CCCCTTEEEECC-CCH---HHHHTTCSEEEE---C-CC---HHHHHHHHHHTCCEEECCC---CHHHHHHHHHHT
T ss_pred -----ccCCCCEEEEee-cCH---HHHhhhhhheec---c-CC---ccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCC
Confidence 123 68998865 764 567889999886 2 22 35899999999999997543 3556666777
Q ss_pred ceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 408 NGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 408 ~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.|+..++.+..+++|.+++++ ++.+++.++-+.++.
T Consensus 348 ~g~~l~~~~~~~~al~~lL~d----~~~r~~a~~l~~~~~ 383 (400)
T 4amg_A 348 IGFDAEAGSLGAEQCRRLLDD----AGLREAALRVRQEMS 383 (400)
T ss_dssp SEEECCTTTCSHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCchHHHHHHHHcC----HHHHHHHHHHHHHHH
Confidence 888888766778899999985 776666666555554
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.06 E-value=1.2e-08 Score=104.97 Aligned_cols=135 Identities=10% Similarity=-0.015 Sum_probs=93.4
Q ss_pred CCeEEEEEeeccC---CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEE-cCCCChHHHH
Q 011979 257 RPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYE 332 (473)
Q Consensus 257 ~~~~i~~~G~~~~---~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~l~ 332 (473)
++.++++.|+... .+....+++++..+ +.+++++ |.+... .
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~g~~~~~--~- 281 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ--------------------------------GRRVILSRGWTELV--L- 281 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT--------------------------------TCCEEEECTTTTCC--C-
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC--------------------------------CCeEEEEeCCcccc--c-
Confidence 3557888899853 44455555555542 2455554 765421 1
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCC
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDK 407 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~ 407 (473)
..+ +++.+.+. +|. ..++..||++|. . .| ..++.||+++|+|+|+.... ...+.+.+.+
T Consensus 282 -----~~~~~~v~~~~~-~~~---~~ll~~~d~~v~---~-~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g 345 (416)
T 1rrv_A 282 -----PDDRDDCFAIDE-VNF---QALFRRVAAVIH---H-GS---AGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALG 345 (416)
T ss_dssp -----SCCCTTEEEESS-CCH---HHHGGGSSEEEE---C-CC---HHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHT
T ss_pred -----cCCCCCEEEecc-CCh---HHHhccCCEEEe---c-CC---hhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCC
Confidence 134 68999976 774 567899999997 2 22 35999999999999998643 3455666777
Q ss_pred ceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 408 NGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 408 ~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.|+..+ +.++++++|.++ .+ ++.++++++.+.+..
T Consensus 346 ~g~~~~~~~~~~~~l~~~i~~l-~~----~~~~~~~~~~~~~~~ 384 (416)
T 1rrv_A 346 IGVAHDGPTPTFESLSAALTTV-LA----PETRARAEAVAGMVL 384 (416)
T ss_dssp SEEECSSSCCCHHHHHHHHHHH-TS----HHHHHHHHHHTTTCC
T ss_pred CccCCCCCCCCHHHHHHHHHHh-hC----HHHHHHHHHHHHHHh
Confidence 888874 589999999999 74 777777777666644
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.06 E-value=5.3e-10 Score=100.69 Aligned_cols=134 Identities=11% Similarity=0.110 Sum_probs=96.6
Q ss_pred CCCeEEEEEeecc---CCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 256 NRPALVVSSTSWT---PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~~~---~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
+++.++++.|+.. ..+.+..+++++..+ +.+++++++++..+
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~--------------------------------~~~~~~~~g~~~~~--- 64 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI--------------------------------PQKVLWRFDGNKPD--- 64 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS--------------------------------SSEEEEECCSSCCT---
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC--------------------------------CCeEEEEECCcCcc---
Confidence 4566889999986 445566666666432 25777777665322
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCC
Q 011979 333 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDK 407 (473)
Q Consensus 333 ~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~ 407 (473)
.+ ++|.+.|+ ++.+++..+ ..||++|. .+ -+.+++|||++|+|+|+.+.. +..+.+.+.+
T Consensus 65 ------~~~~~v~~~~~-~~~~~~l~~-~~ad~~I~---~~----G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g 129 (170)
T 2o6l_A 65 ------TLGLNTRLYKW-IPQNDLLGH-PKTRAFIT---HG----GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARG 129 (170)
T ss_dssp ------TCCTTEEEESS-CCHHHHHTS-TTEEEEEE---CC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTT
T ss_pred ------cCCCcEEEecC-CCHHHHhcC-CCcCEEEE---cC----CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcC
Confidence 23 68999986 887554433 89999997 22 247999999999999999753 4566777888
Q ss_pred ceEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 408 NGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 408 ~G~~~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.|+.++ +.++++++|.+++++ ++ +++++++..
T Consensus 130 ~g~~~~~~~~~~~~l~~~i~~ll~~----~~----~~~~a~~~~ 165 (170)
T 2o6l_A 130 AAVRVDFNTMSSTDLLNALKRVIND----PS----YKENVMKLS 165 (170)
T ss_dssp SEEECCTTTCCHHHHHHHHHHHHHC----HH----HHHHHHHHC
T ss_pred CeEEeccccCCHHHHHHHHHHHHcC----HH----HHHHHHHHH
Confidence 999986 689999999999985 54 455555543
No 50
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.62 E-value=1.7e-05 Score=82.95 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=75.1
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecC-CceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVD-KNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~-~~G~~~~-- 413 (473)
+|+.+.+ |+|+ ..+|..+++.++. +++- .++++|++++|+|+|+.... .....+.+. +.|+..+
T Consensus 327 ~~~~vv~-w~Pq---~~vL~h~~v~~fv---tH~G--~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~ 397 (454)
T 3hbf_A 327 TKGKIVA-WAPQ---VEILKHSSVGVFL---THSG--WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNG 397 (454)
T ss_dssp TTEEEES-SCCH---HHHHHSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGG
T ss_pred CceEEEe-eCCH---HHHHhhcCcCeEE---ecCC--cchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCC
Confidence 5888885 7887 4788999965552 2221 34999999999999998642 234455553 7888874
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHHHHh
Q 011979 414 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW----ATEWEEHAKPLITEVI 468 (473)
Q Consensus 414 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~~~~~~~~~~~ 468 (473)
+.+++.+++.+++++ +..++|++++++..+...= .-+=.+.++.+++++.
T Consensus 398 ~~~~~~l~~av~~ll~~-----~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 398 VLTKESIKKALELTMSS-----EKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp SCCHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 589999999999984 3456677777765522211 1122233666666654
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.55 E-value=8.5e-06 Score=89.51 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=124.1
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh--
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-- 328 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-- 328 (473)
.+.++.+ .++++.|+.+.|++++ ++..+..+.+ +.+.+.....++.+++.|++...
T Consensus 521 ~vdpd~l-~~~~vkRl~eYKRq~Lnil~ii~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~ 579 (796)
T 1l5w_A 521 EINPQAI-FDIQIKRLHEYKRQHLNLLHILALYKE--------------------IRENPQADRVPRVFLFGAKAAPGYY 579 (796)
T ss_dssp CCCTTSE-EEEEESCCCGGGTHHHHHHHHHHHHHH--------------------HHTCTTCCCCCEEEEEECCCCTTCH
T ss_pred CcCCCcc-eEeeeecchhhcccCEeHHHHHHHHHH--------------------HhcCCCCCCCCeEEEEEecCChhHH
Confidence 3455555 8999999999999999 8888887654 11111112245999999998532
Q ss_pred HH------HHHHHH----HcCC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEE
Q 011979 329 ES------YEEKIR----RLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 329 ~~------l~~~~~----~~~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~ 393 (473)
.. +.+.++ +-.. + +|.|+.. .+.+-...++..||+.++ +|. .|.+|+.-+=+|..|.+.|+
T Consensus 580 ~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~n-Y~vslA~~I~~gaDv~l~---~S~a~~EAsGTs~MKam~NGaL~iG 655 (796)
T 1l5w_A 580 LAKNIIFAINKVADVINNDPLVGDKLKVVFLPD-YCVSAAEKLIPAADISEQ---ISTAGKEASGTGNMKLALNGALTVG 655 (796)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSS-CCHHHHHHHGGGCSEEEE---CCCTTTCCCCSHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhccccccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCCeeec
Confidence 11 222332 1123 4 6888866 678888899999999999 564 79999999999999999999
Q ss_pred eccCccccceec--CCceEEeC-CHHHHHHHHH------HHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011979 394 VSYSCIEELVKV--DKNGLLFS-SSSELADQLL------MLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 464 (473)
Q Consensus 394 ~~~~~~~e~i~~--~~~G~~~~-~~~~la~~i~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 464 (473)
+-.|...|+..+ ..||+++. +++++.+.-. .+..+ ++ ..+++..++.. ..++|++. +.+.+|+
T Consensus 656 tLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~---~~-~~~~vvd~~~~--g~fs~~~~--~~y~~Ly 727 (796)
T 1l5w_A 656 TLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKK---DK-VLDAVLKELES--GKYSDGDK--HAFDQML 727 (796)
T ss_dssp CSCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHH---CH-HHHHHHHHHHH--TTTTTTCT--TTTHHHH
T ss_pred CcCCeeeehhhccCCCcEEEecCCHHHHHHHHHcccCHHHHhhc---CH-HHHHHHHHHHc--CCCCCCcH--HHHHHHH
Confidence 876766666543 46999997 5666653211 22222 35 35555555554 26888765 3366666
Q ss_pred HHHh
Q 011979 465 TEVI 468 (473)
Q Consensus 465 ~~~~ 468 (473)
+.+.
T Consensus 728 ~~L~ 731 (796)
T 1l5w_A 728 HSIG 731 (796)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 6664
No 52
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.53 E-value=2.5e-05 Score=81.69 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=75.5
Q ss_pred CcEEEecCCCCcccHHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecC-CceEEeC
Q 011979 341 KRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVD-KNGLLFS 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~-~~G~~~~ 413 (473)
+|+.+.+ |+|+. .+|. ++|++|. -.| .++++|++++|+|+|+.... .....+.+. +.|+..+
T Consensus 325 ~~~~v~~-w~pq~---~vL~h~~~~~fvt----h~G---~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~ 393 (456)
T 2c1x_A 325 GYGMVVP-WAPQA---EVLAHEAVGAFVT----HCG---WNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393 (456)
T ss_dssp TTEEEES-CCCHH---HHHTSTTEEEEEE----CCC---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECG
T ss_pred CceEEec-CCCHH---HHhcCCcCCEEEe----cCC---cchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEec
Confidence 4788886 68874 5688 5567775 222 35999999999999998642 344556566 7888774
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc--h--HHHHHHHHHHHHHHHh
Q 011979 414 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR--W--ATEWEEHAKPLITEVI 468 (473)
Q Consensus 414 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--w--~~~~~~~~~~~~~~~~ 468 (473)
+.++++++|.+++++ ++ .++|++++++..+... + .-+=.+.+..+++++.
T Consensus 394 ~~~~~~~~l~~~i~~ll~~----~~-~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 394 GGVFTKSGLMSCFDQILSQ----EK-GKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451 (456)
T ss_dssp GGSCCHHHHHHHHHHHHHS----HH-HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 589999999999985 54 5677888777653321 1 0111234666666653
No 53
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.46 E-value=3.5e-05 Score=80.98 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=75.9
Q ss_pred CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----cccccee-cCCceEEeC--
Q 011979 341 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVK-VDKNGLLFS-- 413 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~-~~~~G~~~~-- 413 (473)
+|+.+.+ |+|+. .+|..+++.++. +++- .++++|++++|+|+|+.... .....+. +.+.|+..+
T Consensus 353 ~~~~v~~-~~pq~---~~L~h~~~~~~v---th~G--~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 423 (482)
T 2pq6_A 353 DRGLIAS-WCPQD---KVLNHPSIGGFL---THCG--WNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN 423 (482)
T ss_dssp TTEEEES-CCCHH---HHHTSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSS
T ss_pred CCEEEEe-ecCHH---HHhcCCCCCEEE---ecCC--cchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCC
Confidence 5888886 69875 478777774441 2221 35999999999999998643 2334443 567888875
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHHHH
Q 011979 414 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA----TEWEEHAKPLITEV 467 (473)
Q Consensus 414 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~----~~~~~~~~~~~~~~ 467 (473)
+.+++.++|.+++++ ++ .++|++++++..+...=. -+-.+.+..+++++
T Consensus 424 ~~~~~l~~~i~~ll~~----~~-~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~ 477 (482)
T 2pq6_A 424 VKREELAKLINEVIAG----DK-GKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477 (482)
T ss_dssp CCHHHHHHHHHHHHTS----HH-HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcC----Cc-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 689999999999985 54 467888888766332210 12233466666655
No 54
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.35 E-value=0.0005 Score=72.18 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=61.4
Q ss_pred EEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccce-ecCCceEEeC-----
Q 011979 344 AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELV-KVDKNGLLFS----- 413 (473)
Q Consensus 344 ~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i-~~~~~G~~~~----- 413 (473)
.+...|+|+. .+|..+++.++. +++- .++++||+++|+|+|+.... .....+ ..-+.|+..+
T Consensus 341 ~~v~~w~Pq~---~vL~h~~v~~fv---tHgG--~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAPQA---QVLAHPSTGGFL---THCG--WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCCHH---HHHHSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccCHH---HHhCCCCcCeEE---eccc--chhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCC
Confidence 3444578874 789999975552 2221 34999999999999998642 234443 5667777652
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 414 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 414 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
+.++++++|.+++++ + .-..+++++++..
T Consensus 413 ~~~~~~l~~av~~vl~~----~-~~~~~r~~a~~l~ 443 (480)
T 2vch_A 413 LVRREEVARVVKGLMEG----E-EGKGVRNKMKELK 443 (480)
T ss_dssp CCCHHHHHHHHHHHHTS----T-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcC----c-chHHHHHHHHHHH
Confidence 479999999999984 2 2345666666554
No 55
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.28 E-value=0.001 Score=69.52 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=55.3
Q ss_pred CcEEEecCCCCcccHHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccc-eecCCceEEe-
Q 011979 341 KRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEEL-VKVDKNGLLF- 412 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~-i~~~~~G~~~- 412 (473)
+++.+.+ |+|+. .+|. ++|++|. -.| .++++|++++|+|+|+.... ..... +...+.|+..
T Consensus 332 ~~~~v~~-w~pq~---~vL~h~~~~~fvt----h~G---~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~ 400 (463)
T 2acv_A 332 GKGMICG-WAPQV---EVLAHKAIGGFVS----HCG---WNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR 400 (463)
T ss_dssp CSEEEES-SCCHH---HHHHSTTEEEEEE----CCC---HHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESC
T ss_pred CCEEEEc-cCCHH---HHhCCCccCeEEe----cCC---chhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEe
Confidence 3788887 78875 4576 5666775 222 35999999999999998642 23444 4677788877
Q ss_pred -----C----CHHHHHHHHHHHHh
Q 011979 413 -----S----SSSELADQLLMLFK 427 (473)
Q Consensus 413 -----~----~~~~la~~i~~l~~ 427 (473)
+ +.+++.++|.++++
T Consensus 401 ~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 401 VDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred cccCCCCccccHHHHHHHHHHHHh
Confidence 1 47899999999986
No 56
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.01 E-value=5.9e-05 Score=83.17 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=121.6
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHHH-HHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh--
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGIL-LEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-- 328 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~l-i~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-- 328 (473)
.+.++.+ +++++.|+.+.|+++++ +..+..+.+ +.+.+.....+..+++.|++...
T Consensus 545 ~vdpd~l-~~g~vkRl~eYKRq~L~~l~~i~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~ 603 (824)
T 2gj4_A 545 HINPNSL-FDVQVKRIHEYKRQLLNCLHVITLYNR--------------------IKKEPNKFVVPRTVMIGGKAAPGYH 603 (824)
T ss_dssp CCCTTSE-EEEEESCCCGGGTHHHHHHHHHHHHHH--------------------HHHCTTSCCCCEEEEEECCCCTTCH
T ss_pred CcCCCcc-eEeeeecchhhcchhhHHHHHHHHHHH--------------------HHhCCCCCCCCEEEEEEEeCCHhHH
Confidence 3455565 89999999999999998 777776643 00111111125899999998532
Q ss_pred HH------HHHHHHHcC----C-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEE
Q 011979 329 ES------YEEKIRRLR----L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 329 ~~------l~~~~~~~~----l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~ 393 (473)
.. +.+.++..+ + + +|.|+.. .+.+-...++..||+.++ +|. .|.+|+.-+=+|..|.+.|+
T Consensus 604 ~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~n-YdvslA~~I~~gaDv~l~---~S~ag~EAsGTs~MKamlNGaLtig 679 (824)
T 2gj4_A 604 MAKMIIKLITAIGDVVNHDPVVGDRLRVIFLEN-YRVSLAEKVIPAADLSEQ---ISTAGTEASGTGNMKFMLNGALTIG 679 (824)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETT-CCHHHHHHHGGGCSEEEE---CCCTTSCSCCSHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhccCcccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCceEEE
Confidence 22 344444332 2 3 6888866 678888899999999999 564 79999999999999999999
Q ss_pred eccCcccccee--cCCceEEeC-CHHHHHHHHH-------HHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011979 394 VSYSCIEELVK--VDKNGLLFS-SSSELADQLL-------MLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 463 (473)
Q Consensus 394 ~~~~~~~e~i~--~~~~G~~~~-~~~~la~~i~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 463 (473)
+-.|..-|+.. ...|||++. .++++ ..+. .+.+. +++ .+++-.++.. ..|+|... +.+.+|
T Consensus 680 tlDGanvEi~e~vG~~Ngf~FG~~~~ev-~~l~~~~~~a~~~Y~~---~~~-l~~v~d~i~~--g~fs~~~~--~~y~~l 750 (824)
T 2gj4_A 680 TMDGANVEMAEEAGEENFFIFGMRVEDV-DRLDQRGYNAQEYYDR---IPE-LRQIIEQLSS--GFFSPKQP--DLFKDI 750 (824)
T ss_dssp CSCTTHHHHHHHHCGGGSEECSCCHHHH-HHHHHHCCCHHHHHHH---CHH-HHHHHHHHHH--TTTCTTST--TTTHHH
T ss_pred EecCccchhhhccCCCCEEEeCCcHHHH-HHHHHcCCCHHHHhcC---CHH-HHHHHHHHHh--CCCCCCCh--HHHHHH
Confidence 87666556543 356899997 46666 4442 23332 333 3343444443 36888776 336666
Q ss_pred HHHHh
Q 011979 464 ITEVI 468 (473)
Q Consensus 464 ~~~~~ 468 (473)
++++.
T Consensus 751 y~~l~ 755 (824)
T 2gj4_A 751 VNMLM 755 (824)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 57
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.96 E-value=0.00069 Score=66.24 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=51.6
Q ss_pred EEEEEcCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEecc
Q 011979 318 LFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 318 ~l~ivG~g~-~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~ 396 (473)
-.+++|.+. ..+++++.+++. +++.+.++ .++++++|..||+.|. . + |+++.|++++|+|+|....
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~--~~v~v~~~---~~~m~~~m~~aDlvI~---~--g---G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH--NNIRLFID---HENIAKLMNESNKLII---S--A---SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC--SSEEEEES---CSCHHHHHHTEEEEEE---E--S---SHHHHHHHHTTCCEEEECC
T ss_pred EEEEECCCchHHHHHHHHHhhC--CCEEEEeC---HHHHHHHHHHCCEEEE---C--C---cHHHHHHHHcCCCEEEEeC
Confidence 446677764 356666666543 48999988 7999999999999997 2 2 4699999999999999764
No 58
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=97.92 E-value=3.5e-05 Score=84.69 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=119.8
Q ss_pred ccCCCCCeEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCCh--
Q 011979 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-- 328 (473)
Q Consensus 252 ~~~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-- 328 (473)
.+.++.+ .++++.|+.+.|++++ ++..+..+.+ +.+.+.....++.+++.|++...
T Consensus 511 ~vdpd~l-~~~~vkRlheYKRq~Lnil~ii~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~ 569 (796)
T 2c4m_A 511 EIDPESI-FDVQIKRLHEYKRQLMNALYVLDLYFR--------------------IKEDGLTDIPARTVIFGAKAAPGYV 569 (796)
T ss_dssp CCCTTSE-EEEEECCCCGGGTHHHHHHHHHHHHHH--------------------HHTSCCCSSCCEEEEEECCCCTTCH
T ss_pred CCCCCCc-EEEEeecchhhcccCEeHHHHHHHHHH--------------------HhhCCCCCCCCeEEEEEecCCHhHH
Confidence 3455655 8999999999999999 8888887754 11111111245899999998532
Q ss_pred HH------HHHHHH----HcCC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEE
Q 011979 329 ES------YEEKIR----RLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 329 ~~------l~~~~~----~~~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~ 393 (473)
.. +.+.++ +-.. + +|.|+.. .+.+-...++..||+.++ +|. .|.+|+.-+=+|..|.+.|+
T Consensus 570 ~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~n-Y~vslA~~I~~gaDv~l~---~S~a~~EAsGTs~MKam~NGaL~iG 645 (796)
T 2c4m_A 570 RAKAIIKLINSIADLVNNDPEVSPLLKVVFVEN-YNVSPAEHILPASDVSEQ---ISTAGKEASGTSNMKFMMNGALTLG 645 (796)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETT-CCHHHHHHHGGGCSEEEE---CCCTTSCSCCHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhccccccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCCeEEe
Confidence 11 233333 0123 4 6888876 678888899999999999 564 79999999999999999999
Q ss_pred eccCccccceec--CCceEEeCC----HHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011979 394 VSYSCIEELVKV--DKNGLLFSS----SSELADQ---LLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 464 (473)
Q Consensus 394 ~~~~~~~e~i~~--~~~G~~~~~----~~~la~~---i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 464 (473)
+-.|...|+..+ ..|||++.. +.++..+ ...+-+ ++ ..+++..++.. ..++|++. +.+.+|+
T Consensus 646 tLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~----~~-~~~~vvd~~~~--g~fs~~~~--~~y~~Ly 716 (796)
T 2c4m_A 646 TMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYET----VP-GLKRALDALDN--GTLNDNNS--GLFYDLK 716 (796)
T ss_dssp ESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHH----ST-THHHHHHTTTS--SSSCCTTC--CHHHHHH
T ss_pred ccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhc----CH-HHHHHHHHHHc--CCCCCCCH--HHHHHHH
Confidence 876766666543 469999962 4444332 111222 23 23333333333 36888765 2366666
Q ss_pred HHHh
Q 011979 465 TEVI 468 (473)
Q Consensus 465 ~~~~ 468 (473)
+.++
T Consensus 717 ~~L~ 720 (796)
T 2c4m_A 717 HSLI 720 (796)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 59
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.88 E-value=0.00059 Score=67.72 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=69.3
Q ss_pred CCCeEEEEEee-ccCCCCHH--HHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHH
Q 011979 256 NRPALVVSSTS-WTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (473)
Q Consensus 256 ~~~~~i~~~G~-~~~~K~~~--~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~ 332 (473)
+++.+++..|+ ..+.|.+. .+.++++.+.+ .+++++++|...+.+..+
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~-----------------------------~~~~vvl~g~~~e~~~~~ 229 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID-----------------------------EGYQVVLFGSAKDHEAGN 229 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH-----------------------------TTCEEEECCCGGGHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEeChhhHHHHH
Confidence 35667777787 55666654 77777777765 267889998655544444
Q ss_pred HHHHHcC----CCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 333 EKIRRLR----LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 333 ~~~~~~~----l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
+..+..+ ...+.+.|. .+-.++..+++.||++|. .+++ .+-.|.|+|+|+|+-
T Consensus 230 ~i~~~~~~~~~~~~~~l~g~-~sl~e~~ali~~a~l~I~---~Dsg-----~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 230 EILAALNTEQQAWCRNLAGE-TQLDQAVILIAACKAIVT---NDSG-----LMHVAAALNRPLVAL 286 (348)
T ss_dssp HHHTTSCHHHHTTEEECTTT-SCHHHHHHHHHTSSEEEE---ESSH-----HHHHHHHTTCCEEEE
T ss_pred HHHHhhhhccccceEeccCc-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEEEE
Confidence 4443322 123456676 888999999999999998 3444 233399999999996
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.85 E-value=0.00034 Score=77.26 Aligned_cols=260 Identities=13% Similarity=0.055 Sum_probs=142.8
Q ss_pred HhhCCCeEEEEecCchhhhhhhhcCC----CchHHHHHHHHHHHHhhcCCEEEEcCHHHHHHHHHHhCCc-eEEeeCCCC
Q 011979 123 SSLRRSAFIVDWHNFGYTLLSLSLGR----RSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP 197 (473)
Q Consensus 123 ~~~~~~~~i~~~h~~~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~g~~-~~vi~n~~~ 197 (473)
.+..+..+|.+||+.+...+...... ........+.+. ...+..|.+++.|+.+.+.+.+.++.+ -.++..|-|
T Consensus 432 ~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~P 510 (729)
T 3l7i_A 432 NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFN-RETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYP 510 (729)
T ss_dssp CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHH-HHHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCG
T ss_pred ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHH-HhhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCC
Confidence 34456788999999853222111110 011111111111 223567999999999999999888886 567777743
Q ss_pred --C-Ccc-cCChhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCeEEEEEeeccCCCC-
Q 011979 198 --E-FFH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDED- 272 (473)
Q Consensus 198 --~-~f~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~- 272 (473)
+ .|. +...+.+.+++++++ ++++++ +|+|.-++.....
T Consensus 511 R~D~l~~~~~~~~~~~~~~~~~~------------------------------------~~~~kk-~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 511 RNDVLVNRANDQEYLDEIRTHLN------------------------------------LPSDKK-VIMYAPTWRDDEFV 553 (729)
T ss_dssp GGHHHHHSTTCHHHHHHHHHHTT------------------------------------CCSSCE-EEEECCCCCGGGCC
T ss_pred chHHHhcccchHHHHHHHHHHhC------------------------------------CCCCCe-EEEEeeeeeCCccc
Confidence 2 232 223334555666654 334444 8999988776421
Q ss_pred --------HHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHHHcCC-CcE
Q 011979 273 --------FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRV 343 (473)
Q Consensus 273 --------~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l-~~V 343 (473)
...-++.+.... .++..+++-.- |. +.+.....+. +.+
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l-----------------------------~~~~~li~r~H-p~---~~~~~~~~~~~~~~ 600 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKEL-----------------------------GDDYVILLRMH-YL---ISNALDLSGYENFA 600 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHH-----------------------------TTTEEEEECCC-HH---HHTTCCCTTCTTTE
T ss_pred cccccccchhhHHHHHHHHc-----------------------------CCCeEEEEecC-cc---hhccccccccCCcE
Confidence 111122222211 24677776543 11 1111111122 344
Q ss_pred EEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC---------ccccceecCCceEEeCC
Q 011979 344 AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS---------CIEELVKVDKNGLLFSS 414 (473)
Q Consensus 344 ~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~---------~~~e~i~~~~~G~~~~~ 414 (473)
.-... ..++.+++..||++|. ..+ ..++|++..++|||..... |.-.-..+..-|-++.|
T Consensus 601 ~~~~~---~~di~~ll~~aD~lIT---DyS-----Sv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~ 669 (729)
T 3l7i_A 601 IDVSN---YNDVSELFLISDCLIT---DYS-----SVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTE 669 (729)
T ss_dssp EECTT---CSCHHHHHHTCSEEEE---SSC-----THHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESS
T ss_pred EeCCC---CcCHHHHHHHhCEEEe---ech-----HHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECC
Confidence 44433 5799999999999997 333 3899999999999987321 11111122345677788
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011979 415 SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 468 (473)
Q Consensus 415 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 468 (473)
.++|.++|...... +.+..++..+-..++. .+.=.++-+++++.+++...
T Consensus 670 ~~eL~~~i~~~~~~---~~~~~~~~~~~~~~~~-~~~dg~as~ri~~~i~~~~~ 719 (729)
T 3l7i_A 670 PYGLAKELKNLDKV---QQQYQEKIDAFYDRFC-SVDNGKASQYIGDLIHKDIK 719 (729)
T ss_dssp HHHHHHHHTTHHHH---HHHTHHHHHHHHHHHS-TTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc---chhHHHHHHHHHHHhC-CccCChHHHHHHHHHHhcCc
Confidence 99999999887653 1122222333333322 23334566777777666543
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.85 E-value=0.00033 Score=77.41 Aligned_cols=142 Identities=14% Similarity=0.089 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCC-ChHHHHHHHHHcCC--CcEEEe
Q 011979 270 DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP-DKESYEEKIRRLRL--KRVAFR 346 (473)
Q Consensus 270 ~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~-~~~~l~~~~~~~~l--~~V~~~ 346 (473)
.|=-+..++.+..+.++ .|+-+|++...+. ....+++.+++.|+ ++|.|.
T Consensus 533 ~Ki~p~~~~~W~~IL~~---------------------------vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~ 585 (723)
T 4gyw_A 533 YKIDPSTLQMWANILKR---------------------------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFS 585 (723)
T ss_dssp GGCCHHHHHHHHHHHHH---------------------------CSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEE
T ss_pred ccCCHHHHHHHHHHHHh---------------------------CCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEEC
Confidence 45566777888877774 6999998887653 35678888999998 699999
Q ss_pred cCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcccc-----ce-ecCCceEEeCCHHHHHH
Q 011979 347 TMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE-----LV-KVDKNGLLFSSSSELAD 420 (473)
Q Consensus 347 g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~e-----~i-~~~~~G~~~~~~~~la~ 420 (473)
+. .+.++....++.+|+++= +...+=+++.+||+.+|+|||+-....+.. ++ .-|-.-+++.|.++..+
T Consensus 586 ~~-~~~~~~l~~~~~~Di~LD----t~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~ 660 (723)
T 4gyw_A 586 PV-APKEEHVRRGQLADVCLD----TPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYED 660 (723)
T ss_dssp EC-CCHHHHHHHGGGCSEEEC----CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHH
T ss_pred CC-CCHHHHHHHhCCCeEEeC----CCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHH
Confidence 88 999999999999999996 322234689999999999999975322111 00 01223356678999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 421 QLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 421 ~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.-.++.++ ++.+.++++..++..
T Consensus 661 ~a~~la~d----~~~l~~lr~~l~~~~ 683 (723)
T 4gyw_A 661 IAVKLGTD----LEYLKKVRGKVWKQR 683 (723)
T ss_dssp HHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred HHHHHhcC----HHHHHHHHHHHHHHH
Confidence 99999985 888888887776543
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.79 E-value=0.0023 Score=64.26 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCCCeEEEEEeeccCCCCH--HHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHH
Q 011979 254 KPNRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (473)
Q Consensus 254 ~~~~~~~i~~~G~~~~~K~~--~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l 331 (473)
.++++.+++..|.-...|.+ +.+.+.++.+.++ +.+++++|...+.+..
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~-----------------------------g~~vvl~g~~~e~~~~ 232 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL-----------------------------GYKTVFFGGPMDLEMV 232 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH-----------------------------TCEEEECCCTTTHHHH
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC-----------------------------CCeEEEEeCcchHHHH
Confidence 34466677777764445554 5677777777652 4678888876666656
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 332 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 332 ~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
++..+..+...+.+.|. .+-.++..+++.||++|. ..++ + .-+ |.|+|+|+|+--
T Consensus 233 ~~i~~~~~~~~~~l~g~-~sl~e~~ali~~a~~~i~---~DsG---~-~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 233 QPVVEQMETKPIVATGK-FQLGPLAAAMNRCNLLIT---NDSG---P-MHV-GISQGVPIVALY 287 (349)
T ss_dssp HHHHHTCSSCCEECTTC-CCHHHHHHHHHTCSEEEE---ESSH---H-HHH-HHTTTCCEEEEC
T ss_pred HHHHHhcccccEEeeCC-CCHHHHHHHHHhCCEEEE---CCCC---H-HHH-HHhcCCCEEEEE
Confidence 66666554344666776 888999999999999998 3344 2 334 899999999963
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.58 E-value=0.0016 Score=61.52 Aligned_cols=73 Identities=10% Similarity=0.014 Sum_probs=51.9
Q ss_pred cEEEecCCCCcccHHHHHh-cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc---c-----ccceecCCceEEe
Q 011979 342 RVAFRTMWLSAEDYPLLLG-SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC---I-----EELVKVDKNGLLF 412 (473)
Q Consensus 342 ~V~~~g~~v~~~~i~~~l~-~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~---~-----~e~i~~~~~G~~~ 412 (473)
++...++ .+++..+|. .||++|. -.| ..+++|++++|+|.|...... . ++.+.+.+.+++.
T Consensus 115 ~v~v~~f---~~~m~~~l~~~AdlvIs----haG---agTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~ 184 (224)
T 2jzc_A 115 KVIGFDF---STKMQSIIRDYSDLVIS----HAG---TGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC 184 (224)
T ss_dssp EEEECCS---SSSHHHHHHHHCSCEEE----SSC---HHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE
T ss_pred eEEEeec---cchHHHHHHhcCCEEEE----CCc---HHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc
Confidence 5666666 589999999 9999997 223 359999999999999987532 1 2334333445554
Q ss_pred CCHHHHHHHHHHH
Q 011979 413 SSSSELADQLLML 425 (473)
Q Consensus 413 ~~~~~la~~i~~l 425 (473)
+++.|+++|..+
T Consensus 185 -~~~~L~~~i~~l 196 (224)
T 2jzc_A 185 -APTETGLIAGLR 196 (224)
T ss_dssp -CSCTTTHHHHHH
T ss_pred -CHHHHHHHHHHH
Confidence 567777777776
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=94.03 E-value=0.056 Score=52.93 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=78.4
Q ss_pred CCCeEEEEEeeccCCCCHH--HHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHH-HH
Q 011979 256 NRPALVVSSTSWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES-YE 332 (473)
Q Consensus 256 ~~~~~i~~~G~~~~~K~~~--~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~-l~ 332 (473)
+++.+++..|.-...|.+. .+.+.++.+.+ .++++++++.++.... .+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~-----------------------------~~~~vvl~~g~~~e~~~~~ 227 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLAD-----------------------------SGIRIKLPWGAPHEEERAK 227 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT-----------------------------TCCEEEECCSSHHHHHHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHH-----------------------------CCCcEEEecCCHHHHHHHH
Confidence 3555666666655556544 56566665533 3578888743443333 33
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCccc----------cc
Q 011979 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE----------EL 402 (473)
Q Consensus 333 ~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~~----------e~ 402 (473)
+..+.. +++.+.|. .+-.++..+++.||++|. ..+| + .=+ |.|+|+|+|+--.+..+ .+
T Consensus 228 ~i~~~~--~~~~l~g~-~sl~el~ali~~a~l~I~---~DSG---~-~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~ 296 (326)
T 2gt1_A 228 RLAEGF--AYVEVLPK-MSLEGVARVLAGAKFVVS---VDTG---L-SHL-TAALDRPNITVYGPTDPGLIGGYGKNQMV 296 (326)
T ss_dssp HHHTTC--TTEEECCC-CCHHHHHHHHHTCSEEEE---ESSH---H-HHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEE
T ss_pred HHHhhC--CcccccCC-CCHHHHHHHHHhCCEEEe---cCCc---H-HHH-HHHcCCCEEEEECCCChhhcCCCCCCceE
Confidence 333322 46777777 889999999999999998 3344 2 334 77799999986211111 11
Q ss_pred eecCCceEEeC-CHHHHHHHHHHHHhC
Q 011979 403 VKVDKNGLLFS-SSSELADQLLMLFKG 428 (473)
Q Consensus 403 i~~~~~G~~~~-~~~~la~~i~~l~~~ 428 (473)
+. +...-+-+ ++++..+++.++++.
T Consensus 297 ~~-~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 297 CR-APGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EE-CGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred ec-CCcccccCCCHHHHHHHHHHHHHH
Confidence 11 11111112 588888888887763
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=93.22 E-value=1.2 Score=49.13 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=96.3
Q ss_pred eEEEEEeeccCCCCHHH-HHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCcccc-----CCCEEEEEEcCCC-Ch---
Q 011979 259 ALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL-----YPRLLFIITGKGP-DK--- 328 (473)
Q Consensus 259 ~~i~~~G~~~~~K~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ivG~g~-~~--- 328 (473)
...+++-|+.+.|...+ ++..+..+.+ +.+..++|.-.. .....+++.|+-. .-
T Consensus 601 Lfdvq~KR~heYKRq~LniL~ii~ry~~----------------Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~a 664 (879)
T 1ygp_A 601 LFDMQVKRIHEYKRQQLNVFGIIYRYLA----------------MKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMA 664 (879)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHHHHH----------------HHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHH
T ss_pred eeeeeeehhhHhHHHHHHHHHHHHHHHH----------------HHhCccccCCCcccccCCCCeEEEEeccCCCCcHHH
Confidence 38889999999999988 6777666543 111110111000 1348888888752 21
Q ss_pred HHHHHHHHHc--------CC-C--cEEEecCCCCcccHHHHHhcCcEEEEeccCC--CCCCCcHHHHHHHhcCCcEEEec
Q 011979 329 ESYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 329 ~~l~~~~~~~--------~l-~--~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
..+-+++... .+ + +|.|+.- ...+-...++..||+-.. .| ..|..|+.=+=+|..|.+.|+|-
T Consensus 665 K~iIklI~~va~~iN~Dp~v~~~LKVVFlen-Y~VslAe~iipaaDvseq---istag~EASGTsnMKfalNGaLtlgtl 740 (879)
T 1ygp_A 665 KLIIKLINCVADIVNNDESIEHLLKVVFVAD-YNVSKAEIIIPASDLSEH---ISTAGTEASGTSNMKFVMNGGLIIGTV 740 (879)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSEEEEEETT-CCHHHHHHHGGGCSEEEE---CCCTTCCSCCHHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHHHhccChhhCCceEEEEeCC-CCHHHHHHhhhhhhhhhh---CCCCCccccCchhhHHHHcCCeeeecc
Confidence 2222222222 12 3 6999976 778888999999999998 44 56889999999999999999998
Q ss_pred cCccccceec--CCceEEeC-CHHHHH
Q 011979 396 YSCIEELVKV--DKNGLLFS-SSSELA 419 (473)
Q Consensus 396 ~~~~~e~i~~--~~~G~~~~-~~~~la 419 (473)
.|..-|+.++ ..|+|++. +.+++.
T Consensus 741 DGanvEi~e~vG~eN~fiFG~~~~ev~ 767 (879)
T 1ygp_A 741 DGANVEITREIGEDNVFLFGNLSENVE 767 (879)
T ss_dssp CTHHHHHHHHHCGGGSEEESCCHHHHH
T ss_pred cchhHHHHHHcCcccEEEccCCHHHHH
Confidence 8887777655 56999997 454443
No 66
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=63.69 E-value=8.9 Score=33.77 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEecc-----Ccc--------ccceec-------------CCce
Q 011979 357 LLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY-----SCI--------EELVKV-------------DKNG 409 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~~-----~~~--------~e~i~~-------------~~~G 409 (473)
..+..||++|...... ...|...-+-=|.|.|+||++-.. ++. .++.+. ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 4588999999854211 111222344447899999999732 211 111110 1288
Q ss_pred EEeCCHHHHHHHHHHHH
Q 011979 410 LLFSSSSELADQLLMLF 426 (473)
Q Consensus 410 ~~~~~~~~la~~i~~l~ 426 (473)
.++.+.+++.+.|..++
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 99999999999887754
No 67
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=59.48 E-value=66 Score=25.64 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=67.7
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc-----
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC----- 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~----- 387 (473)
..+++|+.+.+. ...+.+.+++.+.. |.... +.++....+.. .|++++-. .....-|..+++.+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~-v~~~~---~~~~a~~~l~~~~~dlvi~d~--~l~~~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFD-SDMVH---SAAQALEQVARRPYAAMTVDL--NLPDQDGVSLIRALRRDSRTR 79 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCE-EEEEC---SHHHHHHHHHHSCCSEEEECS--CCSSSCHHHHHHHHHTSGGGT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCe-EEEEC---CHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhCcccC
Confidence 457888886643 35567777776653 44443 35666666654 57777721 1223346677777654
Q ss_pred CCcEEEeccCc----cc-cceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYSC----IE-ELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~~----~~-e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|...... .. +....+..+++.. +.++|...|..+++.
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 80 DLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 78888864322 22 4555677788885 699999999988874
No 68
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=59.45 E-value=65 Score=25.94 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc----
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~---- 387 (473)
...+++|+.+.+. ...+.+..+..|. .|.... +.++....+.. .|++++=. .....-+..+++.+..
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~ 80 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF-DIIQCG---NAIEAVPVAVKTHPHLIITEA--NMPKISGMDLFNSLKKNPQT 80 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE-EEEEES---SHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHTSTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEeC---CHHHHHHHHHcCCCCEEEEcC--CCCCCCHHHHHHHHHcCccc
Confidence 4578899987653 4667777777664 344333 35666666654 68888721 1222345677777654
Q ss_pred -CCcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 -GLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 -G~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|||.... .. ..+....+..+++.. +.++|...|..++..
T Consensus 81 ~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 81 ASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp TTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 688887542 22 233455677888886 689999999888763
No 69
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=53.29 E-value=58 Score=26.57 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=66.2
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCCCCCCcHHHHHHHh---c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFG---C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~-~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~~e~~p~kv~Eama---~ 387 (473)
..+++|+.+.+. ...+...+++. +...|..... .++....+.. .|++++-.. ....-+..+++.+. .
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~---~~~a~~~l~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 77 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAET---VSDALAFLEADNTVDLILLDVN--LPDAEAIDGLVRLKRFDP 77 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESS---HHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHHCT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecC---HHHHHHHHhccCCCCEEEEeCC--CCCCchHHHHHHHHHhCC
Confidence 467888886643 35567777776 5434555433 6777777765 688887211 11123445555554 4
Q ss_pred CCcEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
++|+|..... ...+.+..+..|++.. +.+++...|..++..
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 78 SNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp TSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 7888886422 2334555677788875 689999999999875
No 70
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=51.34 E-value=35 Score=31.39 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=47.9
Q ss_pred CEEEEEEcCCC-------ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCC-----------CC
Q 011979 316 RLLFIITGKGP-------DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-----------DL 377 (473)
Q Consensus 316 ~~~l~ivG~g~-------~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e-----------~~ 377 (473)
+-++.++..+. ....+.+..+++|. .+..+-. .++..+.+.+||..++| . |+ ++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~-~~~~v~~---~~d~~~~l~~ad~I~lp---G-G~~~~~~~~l~~~gl 102 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV-NVTGIHR---VADPLAAIEKAEIIIVG---G-GNTFQLLKESRERGL 102 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC-EEEETTS---SSCHHHHHHHCSEEEEC---C-SCHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEec---cccHHHHHhcCCEEEEC---C-CcHHHHHHHHHHCCh
Confidence 34667776542 12445666677775 3333322 35667889999999994 3 32 34
Q ss_pred cHHHHHHHhcCCcEEEeccC
Q 011979 378 PMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 378 p~kv~Eama~G~PvI~~~~~ 397 (473)
--.+-|+...|+|++.+..|
T Consensus 103 ~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 103 LAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp HHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHHcCCEEEEECHH
Confidence 55777888899999999643
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=51.07 E-value=91 Score=24.75 Aligned_cols=107 Identities=6% Similarity=-0.036 Sum_probs=66.4
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc----
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~---- 387 (473)
...+++|+.+.+. .+.+.+..+..+. .|.... +.++....+.. .|+.++=. .....-+..+++.+..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~ 79 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF-HIISAD---SGGQCIDLLKKGFSGVVLLDI--MMPGMDGWDTIRAILDNSLE 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHTCCCEEEEEES--CCSSSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe-EEEEeC---CHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHhhccc
Confidence 4578888886643 3566777777765 344443 36677777665 47777621 1222345667776643
Q ss_pred -CCcEEEecc----CccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 388 -GLPVCAVSY----SCIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 388 -G~PvI~~~~----~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.+|||.... ....+....+..+++.. +.++|...|..++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 80 QGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 578887532 22334455566778875 68899999988876
No 72
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=48.58 E-value=63 Score=26.38 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=38.8
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhhCCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (473)
.++|++++..+..-....+...++.....+++...++..+ .+.....-+|.++........
T Consensus 69 ~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~-------------------~~~l~~~G~~~vi~p~~~~~~ 129 (141)
T 3llv_A 69 EGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKK-------------------KEEFEEAGANLVVLVADAVKQ 129 (141)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGG-------------------HHHHHHTTCSEEEEHHHHHHH
T ss_pred ccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhH-------------------HHHHHHcCCCEEECHHHHHHH
Confidence 5799998877643333434555555555566666665521 011112247888888887777
Q ss_pred HHHHH
Q 011979 180 ELAQN 184 (473)
Q Consensus 180 ~l~~~ 184 (473)
.+.+.
T Consensus 130 ~l~~~ 134 (141)
T 3llv_A 130 AFMDK 134 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 73
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=48.50 E-value=72 Score=25.82 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=46.1
Q ss_pred CCCEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcE
Q 011979 314 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 314 ~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~Pv 391 (473)
..+..++|.|.-+ .+++++++++.+|. .+.+. |+ +..|++|+ ... . -+.|+-.|...|+||
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg---~v~~s-VS--------kkTd~LV~---G~~-~-g~sK~~kA~~lgI~I 95 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGG---KVTGN-VS--------KKTNYLVM---GRD-S-GQSKSDKAAALGTKI 95 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTC---EEESS-CC--------TTCCEEEE---CBC-C-CHHHHHHHHHHTCEE
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCC---EeeCc-cc--------CCceEEEE---CCC-C-ChHHHHHHHHcCCeE
Confidence 3568999999753 57899999999983 23444 33 56788887 221 1 147999999999999
Q ss_pred EEe
Q 011979 392 CAV 394 (473)
Q Consensus 392 I~~ 394 (473)
|.-
T Consensus 96 i~E 98 (109)
T 2k6g_A 96 IDE 98 (109)
T ss_dssp ECH
T ss_pred EeH
Confidence 863
No 74
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=47.64 E-value=14 Score=33.62 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=42.6
Q ss_pred ccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc-cccce----ecC------C--ceEEeCCHHHHH
Q 011979 353 EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-IEELV----KVD------K--NGLLFSSSSELA 419 (473)
Q Consensus 353 ~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~-~~e~i----~~~------~--~G~~~~~~~~la 419 (473)
+.-.-+...||.+|+. +. +-+-=.-++|++..|+||++.+..+ ....+ .++ . .-.+++|++++.
T Consensus 110 ~Rk~~m~~~sda~Ivl--pG-G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~ 186 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSI--GG-EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAV 186 (195)
T ss_dssp HHHHHHHTTCSEEEEE--SC-CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHH
T ss_pred HHHHHHHHhCCEEEEe--cC-CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHH
Confidence 4555677789999985 22 2111227899999999999996433 22222 211 1 122346788888
Q ss_pred HHHHHH
Q 011979 420 DQLLML 425 (473)
Q Consensus 420 ~~i~~l 425 (473)
+.|.++
T Consensus 187 ~~l~~~ 192 (195)
T 1rcu_A 187 QIIEQI 192 (195)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 877653
No 75
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=47.33 E-value=1e+02 Score=24.31 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=68.1
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHH-cCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc---
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRR-LRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC--- 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~-~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~--- 387 (473)
...+++|+.+.+. ...+.+..+. .+...|..... .++....+.. .|+.++-. .....-+..+++.+..
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN---PFDAGDLLHTVKPDVVMLDL--MMVGMDGFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS---HHHHHHHHHHTCCSEEEEET--TCTTSCHHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECC---HHHHHHHHHhcCCCEEEEec--ccCCCcHHHHHHHHHhCcc
Confidence 3467888886643 3556777777 66543555533 5666666654 58888722 1222245566776654
Q ss_pred --CCcEEEec-cCc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 --GLPVCAVS-YSC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 --G~PvI~~~-~~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|... ... ..+.+..+..+++.. +.+++...|..++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 67888753 222 234555677888885 689999999998875
No 76
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=46.34 E-value=1e+02 Score=24.06 Aligned_cols=106 Identities=12% Similarity=-0.000 Sum_probs=66.7
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhc---------CcEEEEeccCCCCCCCcHHHHHHH
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGS---------ADLGVCLHTSSSGLDLPMKVVDMF 385 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~-~V~~~g~~v~~~~i~~~l~~---------adi~v~~~~~s~~e~~p~kv~Eam 385 (473)
.+++|+.+.+. .+.+.+..+..+.. .|..... .++....+.. .|+.++=. .....-|..+++.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~dlvi~d~--~~~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRD---GMEAMAYLRQEGEYANASRPDLILLXL--NLPKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECS---HHHHHHHHTTCGGGGSCCCCSEEEECS--SCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECC---HHHHHHHHHcccccccCCCCcEEEEec--CCCcccHHHHHHHH
Confidence 46778876543 35567777776652 5555543 6777777764 68888721 11222355666665
Q ss_pred h-----cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 386 G-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 386 a-----~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
. ..+|+|.... . ...+....+..|++.. +.+++...|..++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 4 4678887542 2 2334455677888886 68899999888866
No 77
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=46.11 E-value=1.1e+02 Score=24.68 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=67.4
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---c
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---C 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~ 387 (473)
...+++|+.+.+. .+.+.+..+..+. ..|.... +.++....+.. .|++++= ......-|..+++.+. .
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~dlii~D--~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAK---NGQEAIQLLEKESVDIAILD--VEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEES---SHHHHHHHHTTSCCSEEEEC--SSCSSSCHHHHHHHHHHTTC
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC---CHHHHHHHhhccCCCEEEEe--CCCCCCcHHHHHHHHHHhCC
Confidence 4578999986543 3455666665542 2344443 36677777655 5777772 1122334556666654 3
Q ss_pred CCcEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|||..... ...+.+..+..+++.. +.+++.+.|..++..
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 6788775422 2345566778889886 699999999999875
No 78
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.99 E-value=1.2e+02 Score=24.54 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=68.8
Q ss_pred cCCCEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh--
Q 011979 313 LYPRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-- 386 (473)
Q Consensus 313 ~~~~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-- 386 (473)
..+..+++|+.+.+. .+.+.+..++.+. ..|.... +.++....+.. .|+.++-.. ....-|..+++.+.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEAD---DGAAALELIKAHLPDVALLDYR--MPGMDGAQVAAAVRSY 86 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEES---SHHHHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHT
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeC---CHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhc
Confidence 346788999997653 3556777777763 2232332 35666666643 688887221 22234556666554
Q ss_pred -cCCcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 -CGLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 -~G~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
...|||.... .. ..+.+..+..|++.. +.+++.++|..++..
T Consensus 87 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 87 ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 3577877542 22 234566778899986 699999999999875
No 79
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=43.65 E-value=73 Score=26.49 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG----- 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama----- 386 (473)
.+++++||=+.+. +..+++..++.|...|..... ..+..+.+.. -|+.++=..-. .--|..+++.+-
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~---g~~al~~~~~~~~DlillD~~MP--~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADD---GLTALPMLKKGDFDFVVTDWNMP--GMQGIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHHHHCCSEEEEESCCS--SSCHHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECC---HHHHHHHHHhCCCCEEEEcCCCC--CCCHHHHHHHHHhCCCC
Confidence 5678888876543 356677788888765654422 4555555554 58877722212 223667777764
Q ss_pred cCCcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 387 CGLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 387 ~G~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
..+|||.... +. ..+....|..+++.. +.++|.+.|.++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4689987643 32 224456778899986 79999999988865
No 80
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=43.49 E-value=1.1e+02 Score=23.63 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=65.4
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc-----
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC----- 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~----- 387 (473)
..+++|+.+.+. ...+....+..+...|..... .++....+.. .|+.++=. .....-|..+++.+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~---~~~a~~~~~~~~~dlvi~D~--~l~~~~g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAED---GVDALNKLQAGGYGFVISDW--NMPNMDGLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHTTCCCCEEEEES--CCSSSCHHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCC---HHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHhhcccC
Confidence 356788886543 345666667666544554433 5566666654 58887721 1122245677777753
Q ss_pred CCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 388 GLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 388 G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.+|+|.... . ...+....+..+++.. +.+++.+.|..++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 578876532 2 2334556677888885 68899998887764
No 81
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=42.25 E-value=85 Score=25.70 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG----- 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama----- 386 (473)
...+++|+.+.+. ...+.+..++.|. .|.... +.++....+.. .|++++-. .....-|..+++.+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~l~~~~~dlii~D~--~l~~~~g~~~~~~lr~~~~~ 79 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGY-QTEHVR---NGREAVRFLSLTRPDLIISDV--LMPEMDGYALCRWLKGQPDL 79 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---SHHHHHHHHTTCCCSEEEEES--CCSSSCHHHHHHHHHHSTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCC-EEEEeC---CHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhCCCc
Confidence 3568888886543 3556666776664 344432 35666666655 57777722 122234667777664
Q ss_pred cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 ~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..+|+|.... . ...+....+..+++.. +.+++...|..++..
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678887542 2 2334555677888886 699999999998875
No 82
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=42.05 E-value=1.2e+02 Score=23.73 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=64.7
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---cCCc
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGLP 390 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~G~P 390 (473)
++++|+.+.+. .+.+.+..++.+...+.... +.++....+.. .|+.++-. .....-|..+++.+. ...|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~~a~~~~~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~~~ 76 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELT---EGGSAVQRVETLKPDIVIIDV--DIPGVNGIQVLETLRKRQYSGI 76 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEES---SSTTHHHHHHHHCCSEEEEET--TCSSSCHHHHHHHHHHTTCCSE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcC---CHHHHHHHHHhcCCCEEEEec--CCCCCChHHHHHHHHhcCCCCe
Confidence 57788886543 35667777776632221222 34666665543 68877722 122234556666554 3577
Q ss_pred EEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 391 VCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 391 vI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
+|.... . ...+....+..|++.. +.+++.++|..++..
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 777532 2 2344556677888886 689999999998875
No 83
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=41.97 E-value=1.4e+02 Score=24.14 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=68.4
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHh-----------cCcEEEEeccCCCCCCCcHHHHH
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG-----------SADLGVCLHTSSSGLDLPMKVVD 383 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~-~V~~~g~~v~~~~i~~~l~-----------~adi~v~~~~~s~~e~~p~kv~E 383 (473)
.+++|+.+.+. ...+++.+++.+.. .|..... .++....+. ..|++++=. .-...-|..+++
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~dliilD~--~l~~~~g~~~~~ 79 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTD---GTSALNYLFGDDKSGRVSAGRAQLVLLDL--NLPDMTGIDILK 79 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESS---HHHHHHHHHCTTSSSGGGTTCBEEEEECS--BCSSSBHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCC---HHHHHHHHhccccccccccCCCCEEEEeC--CCCCCcHHHHHH
Confidence 67888886643 46677778888762 5665543 677777773 367888721 122234667777
Q ss_pred HHhc-----CCcEEEeccCc----cccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 384 MFGC-----GLPVCAVSYSC----IEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 384 ama~-----G~PvI~~~~~~----~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.+.. ++|+|...... ..+....+..+++.. +.++|.+.|.++..
T Consensus 80 ~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6654 67888764322 234556677888886 68888888888754
No 84
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.74 E-value=1.1e+02 Score=24.47 Aligned_cols=108 Identities=8% Similarity=0.125 Sum_probs=68.4
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc---
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC--- 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~-~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~--- 387 (473)
...+++|+.+.+. ...+.+.++..+.. .|..... .++....+.. .|++++= ......-|..+++.+..
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~~~~dlii~D--~~l~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDN---GAKALYQVQQAKYDLIILD--IGLPIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESS---HHHHHHHHTTCCCSEEEEC--TTCGGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECC---HHHHHHHhhcCCCCEEEEe--CCCCCCCHHHHHHHHHhccc
Confidence 3578889886543 45677777777753 3544433 6666666655 5777771 11223346677777654
Q ss_pred --CCcEEEeccC----ccccceecCCceEEeC---CHHHHHHHHHHHHh
Q 011979 388 --GLPVCAVSYS----CIEELVKVDKNGLLFS---SSSELADQLLMLFK 427 (473)
Q Consensus 388 --G~PvI~~~~~----~~~e~i~~~~~G~~~~---~~~~la~~i~~l~~ 427 (473)
++|+|+.... ...+.+..+..+++.. +.+++.+.|..+++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 6888886432 2234556677888874 57888888888876
No 85
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=40.81 E-value=1.3e+02 Score=23.53 Aligned_cols=108 Identities=9% Similarity=0.121 Sum_probs=67.3
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh---cCcEEEEeccCCCCCCCcHHHHHHHhc----
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG---SADLGVCLHTSSSGLDLPMKVVDMFGC---- 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~---~adi~v~~~~~s~~e~~p~kv~Eama~---- 387 (473)
..+++|+.+.+. .+.+++..++.|...|..... ..+....+. ..|+.++=. .-...-|..+++.+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~---~~~a~~~~~~~~~~dlvi~D~--~~p~~~g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEH---GVEAWEKLDANADTKVLITDW--NMPEMNGLDLVKKVRSDSRF 79 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHHHCTTCCEEEECS--CCSSSCHHHHHHHHHTSTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHHHhCCCCCEEEEeC--CCCCCCHHHHHHHHHhcCCC
Confidence 357888886643 466777777777644554432 445444443 367877621 1222346677777653
Q ss_pred -CCcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 -GLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 -G~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|||.... .. ..+....+..+++.. +.+++.+.|..++..
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 578887643 22 234556678889986 699999999988764
No 86
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=40.64 E-value=29 Score=32.99 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=48.7
Q ss_pred CEEEEEEc-CCCChHHHHHHHHHcCCCcEEEecCCCC-----------------------cccHHHHHhcCcEEEEeccC
Q 011979 316 RLLFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLS-----------------------AEDYPLLLGSADLGVCLHTS 371 (473)
Q Consensus 316 ~~~l~ivG-~g~~~~~l~~~~~~~~l~~V~~~g~~v~-----------------------~~~i~~~l~~adi~v~~~~~ 371 (473)
.+++.|+| .|.--..+.+.+.+.. .+++.+. ++ .+++.+++..+|+.|-.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~--~~eLv~~-~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDf--- 80 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAP--DATLVGA-LDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDF--- 80 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCT--TEEEEEE-BCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEEC---
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCC--CCEEEEE-EEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEc---
Confidence 37899999 6755555665555442 4555543 21 26788889999999873
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 372 SSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 372 s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
+..+...--+..++..|+|+|+...|
T Consensus 81 T~p~a~~~~~~~al~~G~~vVigTTG 106 (272)
T 4f3y_A 81 TLPEGTLVHLDAALRHDVKLVIGTTG 106 (272)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 22221222456788999999997654
No 87
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=40.46 E-value=1.4e+02 Score=23.72 Aligned_cols=106 Identities=8% Similarity=-0.053 Sum_probs=66.6
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh----cCcEEEEeccCCCCCCCcHHHHHHHh---cC
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFG---CG 388 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~----~adi~v~~~~~s~~e~~p~kv~Eama---~G 388 (473)
.+++|+.+.+. .+.+.+.++..+. .|.... +.++....+. ..|++++=. .....-|..+++.+. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~-~v~~~~---~~~~a~~~~~~~~~~~dlvi~d~--~l~~~~g~~~~~~l~~~~~~ 77 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGN-EVLTAS---SSTEGLRIFTENCNSIDVVITDM--KMPKLSGMDILREIKKITPH 77 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHHTTTTCCEEEEES--CCSSSCHHHHHHHHHHHCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc-eEEEeC---CHHHHHHHHHhCCCCCCEEEEeC--CCCCCcHHHHHHHHHHhCCC
Confidence 57788886543 3566777777764 344332 3566666665 568888722 122233555555543 46
Q ss_pred CcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 389 LPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 389 ~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
+|+|.... .. ..+.+..+..+++.. +.+++...|..++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 78 MAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 88887542 22 345566777888886 699999999998873
No 88
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=40.29 E-value=1.2e+02 Score=24.85 Aligned_cols=107 Identities=6% Similarity=0.022 Sum_probs=65.6
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc----CcEEEEeccCCCCCCCcHHHHHHHh---c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVDMFG---C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~----adi~v~~~~~s~~e~~p~kv~Eama---~ 387 (473)
..+++|+.+.+. .+.+++.+++.+..-+... -+.++....+.. .|++++-. .....-|..+++.+. .
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~~al~~l~~~~~~~dliilD~--~l~~~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTA---ADGEEAVIKYKNHYPNIDIVTLXI--TMPKMDGITCLSNIMEFDK 110 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHHGGGCCEEEECS--SCSSSCHHHHHHHHHHHCT
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEE---CCHHHHHHHHHhcCCCCCEEEEec--cCCCccHHHHHHHHHhhCC
Confidence 468888886643 3566777777765333133 235666666654 48888721 122223555665543 4
Q ss_pred CCcEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 388 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 388 G~PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.+|||..... ...+....+..+++.. +.++|.+.|..++.
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 6888876432 2334556677888886 68999999887754
No 89
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=40.12 E-value=1.4e+02 Score=23.65 Aligned_cols=109 Identities=12% Similarity=-0.016 Sum_probs=68.7
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc-------CcEEEEeccCCCCCCCcHHHHHHH
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS-------ADLGVCLHTSSSGLDLPMKVVDMF 385 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~-------adi~v~~~~~s~~e~~p~kv~Eam 385 (473)
+..+++|+.+.+. ...+....+..+. ..|.... +.++....+.. .|++++-.. ....-|..+++.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVT---SGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEES---SHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecC---CHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHH
Confidence 4578888887653 3556666666664 2454443 36777777765 788888322 2223455666665
Q ss_pred h-------cCCcEEEeccCc----cccceecC-CceEEeC--CHHHHHHHHHHHHhC
Q 011979 386 G-------CGLPVCAVSYSC----IEELVKVD-KNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 386 a-------~G~PvI~~~~~~----~~e~i~~~-~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
. ...|+|...... ..+....+ ..+++.. +.++|.+.|......
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4 367877754322 23344455 6778886 699999999998875
No 90
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=39.27 E-value=19 Score=31.74 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHH-HHHhhCCCcEEEEecCC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQAL-SLARQMSLEVDVVAYGG 43 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~-~L~~~~g~eV~vi~~~~ 43 (473)
|.+|++++|+..+ .|.+.++...+. .+.+. |++|.++....
T Consensus 1 M~~mmkilii~~S-~g~T~~la~~i~~~l~~~-g~~v~~~~l~~ 42 (199)
T 2zki_A 1 MSCKPNILVLFYG-YGSIVELAKEIGKGAEEA-GAEVKIRRVRE 42 (199)
T ss_dssp --CCCEEEEEECC-SSHHHHHHHHHHHHHHHH-SCEEEEEECCC
T ss_pred CCCCcEEEEEEeC-ccHHHHHHHHHHHHHHhC-CCEEEEEehhH
Confidence 7777778888888 655555555433 34444 99999887543
No 91
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=38.62 E-value=1.1e+02 Score=26.67 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh---------------cCcEEEEeccCCCCCCCc
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG---------------SADLGVCLHTSSSGLDLP 378 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~---------------~adi~v~~~~~s~~e~~p 378 (473)
.+.+++|+-+.+. ...+.+.+++.+...|..... .++...++. ..|++++=... ...-|
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~l--p~~~G 134 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQM--PEMDG 134 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCC--SSSCH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCCC--CCCCH
Confidence 4568889887653 456777788877645655543 667777665 46888883221 12235
Q ss_pred HHHHHHHh-------cCCcEEEeccCc-----cccceecCCceEEeCCHHHHHHHHHHHHhC
Q 011979 379 MKVVDMFG-------CGLPVCAVSYSC-----IEELVKVDKNGLLFSSSSELADQLLMLFKG 428 (473)
Q Consensus 379 ~kv~Eama-------~G~PvI~~~~~~-----~~e~i~~~~~G~~~~~~~~la~~i~~l~~~ 428 (473)
..+++.+. ..+|||...... ..+.+..+..+++....++|.+.|..++..
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~ 196 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC--
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhh
Confidence 56666654 568988864322 234455677889987655899999888774
No 92
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=38.51 E-value=1.7e+02 Score=27.52 Aligned_cols=104 Identities=9% Similarity=0.081 Sum_probs=62.3
Q ss_pred CEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe--ccCCCC--CCCcHHHHHHHh---
Q 011979 316 RLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL--HTSSSG--LDLPMKVVDMFG--- 386 (473)
Q Consensus 316 ~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~--~~~s~~--e~~p~kv~Eama--- 386 (473)
.+.-+|+.+-|. .+++.+.++++|++.|.+..+--+.+.+..+.+.++-+|.. .....| ..++..+.|.+.
T Consensus 123 Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr 202 (267)
T 3vnd_A 123 GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLA 202 (267)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHH
T ss_pred CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHH
Confidence 355667776653 46788899999998887887734568889999998744432 111122 224433444433
Q ss_pred --cCCcEEEeccCccc------cceecCCceEEeCCHHHHHHHHH
Q 011979 387 --CGLPVCAVSYSCIE------ELVKVDKNGLLFSSSSELADQLL 423 (473)
Q Consensus 387 --~G~PvI~~~~~~~~------e~i~~~~~G~~~~~~~~la~~i~ 423 (473)
..+||++- +|+. +.+..+..|+++.+ .+.+.|.
T Consensus 203 ~~~~~pv~vG--fGI~~~e~~~~~~~~gADgvVVGS--aiv~~i~ 243 (267)
T 3vnd_A 203 EFNAPPPLLG--FGIAEPEQVRAAIKAGAAGAISGS--AVVKIIE 243 (267)
T ss_dssp TTTCCCEEEC--SSCCSHHHHHHHHHTTCSEEEECH--HHHHHHH
T ss_pred HhcCCCEEEE--CCcCCHHHHHHHHHcCCCEEEECH--HHHHHHH
Confidence 47898873 3332 25567789999985 3444444
No 93
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=38.30 E-value=64 Score=28.09 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=27.8
Q ss_pred HHHHhcCcEEEEeccCCCC-CCCcHHHHH---HHhcCCcEEEec
Q 011979 356 PLLLGSADLGVCLHTSSSG-LDLPMKVVD---MFGCGLPVCAVS 395 (473)
Q Consensus 356 ~~~l~~adi~v~~~~~s~~-e~~p~kv~E---ama~G~PvI~~~ 395 (473)
...+..||++|...+|-.+ +.=+.+.+| |.|.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 5789999999997654222 112335555 789999999964
No 94
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.86 E-value=1.5e+02 Score=23.43 Aligned_cols=107 Identities=9% Similarity=0.054 Sum_probs=68.1
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc------------CcEEEEeccCCCCCCCcHHH
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS------------ADLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~------------adi~v~~~~~s~~e~~p~kv 381 (473)
..+++|+.+.+. ...+.+..++.+. ..|..... .++....+.. .|+.++=. .....-|..+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~dlvi~D~--~l~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT---GDQALDFLYQTGSYCNPDIAPRPAVILLDL--NLPGTDGREV 80 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECS---HHHHHHHHHTCCSSSCGGGCCCCSEEEECS--CCSSSCHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECC---HHHHHHHHHhcccccCcccCCCCcEEEEEC--CCCCCCHHHH
Confidence 457788886543 3567777777775 25655543 6777777753 58888721 1222245677
Q ss_pred HHHHh-----cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 382 VDMFG-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 382 ~Eama-----~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
++.+. ..+|+|.... . ...+....+..+++.. +.+++...|..++.
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 77765 4578877542 2 2234455677888885 68899988888765
No 95
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.68 E-value=1.1e+02 Score=29.25 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCEEEEEEcCC-CC----hHHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcCcEEEEeccCC-------CCCCCc
Q 011979 315 PRLLFIITGKG-PD----KESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLP 378 (473)
Q Consensus 315 ~~~~l~ivG~g-~~----~~~l~~~~~~~~l~~V~~~g~~----v~~~~i~~~l~~adi~v~~~~~s-------~~e~~p 378 (473)
++-+++++..- .+ .+.+.+..+++|.+.|..+.-. .+.+++.+.+.+||+.++.--.. ...++-
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~ 134 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLM 134 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHH
Confidence 34566666532 22 2567778888898777766320 12346788999999999831000 112233
Q ss_pred HHHHHHHhcC-CcEEEeccC
Q 011979 379 MKVVDMFGCG-LPVCAVSYS 397 (473)
Q Consensus 379 ~kv~Eama~G-~PvI~~~~~ 397 (473)
-.+-|+...| +|++.+..|
T Consensus 135 ~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 135 DRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp HHHHHHHHTTSSEEEEETHH
T ss_pred HHHHHHHHCCCeEEEEeCHH
Confidence 4777888899 899988754
No 96
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.56 E-value=1.2e+02 Score=24.67 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCCEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcE
Q 011979 314 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 314 ~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~Pv 391 (473)
..+..|+|.|.=+ .+++++++++.+|. .+.+. |+ +..|++|+ ... . -+.|+-.|...|+||
T Consensus 23 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg---kv~~s-VS--------kkTd~LV~---G~~-~-g~sKl~KA~~lgI~I 85 (112)
T 2ebu_A 23 LEGLIFVITGVLESIERDEAKSLIERYGG---KVTGN-VS--------KKTNYLVM---GRD-S-GQSKSDKAAALGTKI 85 (112)
T ss_dssp STTCEEEECSCCSSSCHHHHHHHHHHTTC---EECSS-CC--------SSCCEEEE---CSS-C-CSHHHHHHHHHTCEE
T ss_pred cCCCEEEEeeeCCCCCHHHHHHHHHHcCC---EEecc-cc--------CCeeEEEe---cCC-C-ChHHHHHHHHcCCeE
Confidence 3568899999753 57899999999983 23333 32 56788887 321 1 247999999999999
Q ss_pred EEec
Q 011979 392 CAVS 395 (473)
Q Consensus 392 I~~~ 395 (473)
|.-+
T Consensus 86 isE~ 89 (112)
T 2ebu_A 86 IDED 89 (112)
T ss_dssp EEHH
T ss_pred EeHH
Confidence 8753
No 97
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=37.28 E-value=37 Score=31.53 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCEEEEEEcC--C--CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHH--------------------hcCc-EEEEec
Q 011979 315 PRLLFIITGK--G--PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL--------------------GSAD-LGVCLH 369 (473)
Q Consensus 315 ~~~~l~ivG~--g--~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l--------------------~~ad-i~v~~~ 369 (473)
.+..|.|.|. . ..+.++++++++.|- . +..+-..+++ ...+ .+++
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG-------~-v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~li-- 73 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGG-------L-VLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVV-- 73 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTC-------E-ECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEE--
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCC-------E-EecCcchhhccCccccccccccccccccccccccceEEE--
Confidence 4678888886 2 457889999999982 2 1111011111 1111 3333
Q ss_pred cCCCCCCCcHHHHHHHhcCCcEEEec
Q 011979 370 TSSSGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 370 ~~s~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
++ ...-..|.+.|++.|.|||...
T Consensus 74 -a~-~~~rt~K~~~ala~gipiV~~~ 97 (241)
T 2vxb_A 74 -SD-TFSRKVKYLEALAFNIPCVHPQ 97 (241)
T ss_dssp -CS-SCCCCHHHHHHHHHTCCEECTH
T ss_pred -cC-CCCCcHHHHHHHHcCCCEecHH
Confidence 12 2224569999999999999985
No 98
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=37.05 E-value=49 Score=26.81 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=43.5
Q ss_pred EEEEcCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh--cCCcEE
Q 011979 319 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG--CGLPVC 392 (473)
Q Consensus 319 l~ivG~g~~~----~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama--~G~PvI 392 (473)
+++++.|-.. ..+++.+++.|++ +.+.. .+..++...+...|++++ +....+-..=++..+ .|+||.
T Consensus 10 lL~C~aGmSTsllv~km~~~a~~~gi~-v~i~a--~~~~~~~~~~~~~DvvLL----gPQV~y~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 10 LVLCAGSGTSAQLANAINEGANLTEVR-VIANS--GAYGAHYDIMGVYDLIIL----APQVRSYYREMKVDAERLGIQIV 82 (108)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTCS-EEEEE--EETTSCTTTGGGCSEEEE----CGGGGGGHHHHHHHHTTTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCc-eEEEE--cchHHHHhhccCCCEEEE----ChHHHHHHHHHHHHhhhcCCcEE
Confidence 5555666433 6678888888874 44432 234567778899999998 222223334455554 489999
Q ss_pred Eec
Q 011979 393 AVS 395 (473)
Q Consensus 393 ~~~ 395 (473)
+.+
T Consensus 83 vI~ 85 (108)
T 3nbm_A 83 ATR 85 (108)
T ss_dssp ECC
T ss_pred EeC
Confidence 875
No 99
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=36.42 E-value=1.6e+02 Score=23.23 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=64.0
Q ss_pred ccCCCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCCCCCCcHHHHHHHhc
Q 011979 312 YLYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFGC 387 (473)
Q Consensus 312 ~~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~~e~~p~kv~Eama~ 387 (473)
+..+..+++++.+.+. .+.+...++..+. .|.... +.++....+.. .|+.++=.. ....-|..+++.+..
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGA-EVTVHP---SGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKE 84 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCC-EEEEeC---CHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 3457788999987653 3556667777664 444443 25666666554 688887221 122235677777753
Q ss_pred ---CCcEEEec-cCccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 ---GLPVCAVS-YSCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 ---G~PvI~~~-~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|... ...-.+....-..+++.. +.+++...|..++..
T Consensus 85 ~~~~~~ii~ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 85 QTKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SSSCCEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 67877654 222111111115677775 689999999888764
No 100
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=36.30 E-value=2.5e+02 Score=27.88 Aligned_cols=82 Identities=10% Similarity=0.173 Sum_probs=55.4
Q ss_pred cccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcC-CcEEEeccCccccceecCCceEE-e---CCHHHHHHHHHHHH
Q 011979 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-LPVCAVSYSCIEELVKVDKNGLL-F---SSSSELADQLLMLF 426 (473)
Q Consensus 352 ~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G-~PvI~~~~~~~~e~i~~~~~G~~-~---~~~~~la~~i~~l~ 426 (473)
.++...+++..-..+..-.+....-..-|+.+|+.+| +||+-- .+...+++- . ..++ + +++++||+.|..|-
T Consensus 222 ~~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G-~~~~~~~~P-p-~SfI~~~dF~s~~~La~yL~~L~ 298 (371)
T 2nzw_A 222 VKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWG-SPSVAKDFN-P-KSFVNVHDFKNFDEAIDYIKYLH 298 (371)
T ss_dssp CSCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEES-CTTGGGTSC-G-GGSEEGGGSSSHHHHHHHHHHHH
T ss_pred cccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEEC-CCchhhhCC-C-CceEEcccCCCHHHHHHHHHHHh
Confidence 4677888888888888643333333455999999999 555543 344555553 2 3444 3 36999999999998
Q ss_pred hCCCCCHHHHHHHH
Q 011979 427 KGFPDDSDVLKKLR 440 (473)
Q Consensus 427 ~~~~~~~~~~~~~~ 440 (473)
++ ++.+.++-
T Consensus 299 ~n----~~~Y~~y~ 308 (371)
T 2nzw_A 299 TH----KNAYLDML 308 (371)
T ss_dssp TC----HHHHHHHH
T ss_pred cC----HHHHHHHH
Confidence 85 77776654
No 101
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=36.22 E-value=51 Score=27.11 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=66.3
Q ss_pred cCCCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHH-hcC
Q 011979 313 LYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMF-GCG 388 (473)
Q Consensus 313 ~~~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eam-a~G 388 (473)
.....+++||=+.+. ...+++..++.|..-+... -+.++..+.+.. -|+.++=..-... -|..+.+.+ ..+
T Consensus 5 ~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a---~~g~eAl~~~~~~~~DlvllDi~mP~~--~G~el~~~lr~~~ 79 (123)
T 2lpm_A 5 TERRLRVLVVEDESMIAMLIEDTLCELGHEVAATA---SRMQEALDIARKGQFDIAIIDVNLDGE--PSYPVADILAERN 79 (123)
T ss_dssp CCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCS---CCHHHHHHHHHHCCSSEEEECSSSSSC--CSHHHHHHHHHTC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhCCCCEEEEecCCCCC--CHHHHHHHHHcCC
Confidence 345678899987764 4677888888875322211 234566666655 5888872211222 355566555 357
Q ss_pred CcEEEec-cCccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 389 LPVCAVS-YSCIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 389 ~PvI~~~-~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
+|||... .+.......-+..|++.. +.++|...|.++.+
T Consensus 80 ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 80 VPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9988754 333333334456778876 68888888876543
No 102
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=36.14 E-value=51 Score=28.52 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccC----ccccceecCCc-----eEEeCCHHHHHHHHHHHH
Q 011979 356 PLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKN-----GLLFSSSSELADQLLMLF 426 (473)
Q Consensus 356 ~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~----~~~e~i~~~~~-----G~~~~~~~~la~~i~~l~ 426 (473)
...++.||++|.... ....|-+.-+.=|.+.|+||++-..+ ..+-++....+ -+.+++ +++.+.|.+++
T Consensus 63 ~~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHH
Confidence 456899999999533 22222233445578999999994221 22222221111 122345 77777787777
Q ss_pred hC
Q 011979 427 KG 428 (473)
Q Consensus 427 ~~ 428 (473)
+.
T Consensus 141 ~~ 142 (152)
T 4fyk_A 141 EA 142 (152)
T ss_dssp C-
T ss_pred Hh
Confidence 64
No 103
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=35.83 E-value=2.5e+02 Score=27.66 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=44.5
Q ss_pred EEEEEeeccCC--CCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCC-CC--hHHHHH-
Q 011979 260 LVVSSTSWTPD--EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PD--KESYEE- 333 (473)
Q Consensus 260 ~i~~~G~~~~~--K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~--~~~l~~- 333 (473)
++.|+|-+... .=..-++.++..+ ++.+.+++.. .. .+++.+
T Consensus 194 vva~vGDl~~~~nrva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~ 241 (359)
T 1zq6_A 194 VLTWTYHPKPLNTAVANSALTIATRM--------------------------------GMDVTLLCPTPDYILDERYMDW 241 (359)
T ss_dssp EEEECCCSSCCCSHHHHHHHHHHHHT--------------------------------TCEEEEECSSGGGCCCHHHHHH
T ss_pred EEEEEecccccccchHHHHHHHHHHc--------------------------------CCEEEEEcCccccCCCHHHHHH
Confidence 38899987653 3356677777664 4789999854 11 123333
Q ss_pred ---HHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 334 ---KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 334 ---~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
.+++.| ..+.+. .++.+.+..||++...
T Consensus 242 ~~~~a~~~g-~~v~~~------~d~~eav~~aDvVyt~ 272 (359)
T 1zq6_A 242 AAQNVAESG-GSLQVS------HDIDSAYAGADVVYAK 272 (359)
T ss_dssp HHHHHHHHS-CEEEEE------CCHHHHHTTCSEEEEE
T ss_pred HHHHHHHcC-CeEEEE------CCHHHHhcCCCEEEEC
Confidence 333554 244443 6778899999999884
No 104
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=35.17 E-value=3.2e+02 Score=26.47 Aligned_cols=172 Identities=15% Similarity=0.039 Sum_probs=89.2
Q ss_pred EEEEeCCCchhHHHHHHHHHhhCCCeEEE-EecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEc--CHHHHHH
Q 011979 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV--TQAMQHE 180 (473)
Q Consensus 104 vi~~~~p~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v--S~~~~~~ 180 (473)
+..+..-|+.-+-..+-.+.+..+..+++ +..+. ..++.-.+. -.-+.+.+++|.++.= .....+.
T Consensus 51 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~s-------s~~kgEsl~----DTarvLs~~~D~iviR~~~~~~~~~ 119 (323)
T 3gd5_A 51 LGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNT-------QVGRGEPVR----DTARVLGRYVDGLAIRTFAQTELEE 119 (323)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEC-----------------CCHH----HHHHHHTTTCSEEEEECSSHHHHHH
T ss_pred EEEEecCCCcchHhhHHHHHHHcCCeEEEeCcccc-------cCCCCCCHH----HHHHHHHHhCCEEEEecCChhHHHH
Confidence 34444445566665566666655655554 32222 233333332 2234556789998855 4455667
Q ss_pred HHHHhCCceEEeeCCCCCCcccCC-hhHHHHHHHhhhhhccCCCCcccccCCCcCCCCccchhhhcccccccccCCCCCe
Q 011979 181 LAQNWGIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPA 259 (473)
Q Consensus 181 l~~~~g~~~~vi~n~~~~~f~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (473)
+.+.-+++ +.|+.+..++|+- .-+-.-+++.+|. + .-.
T Consensus 120 lA~~~~vP---VINag~~~~HPtQaLaDl~Ti~e~~g~-----------------------------------l---~gl 158 (323)
T 3gd5_A 120 YAHYAGIP---VINALTDHEHPCQVVADLLTIRENFGR-----------------------------------L---AGL 158 (323)
T ss_dssp HHHHHCSC---EEEEECSSCCHHHHHHHHHHHHHHHSC-----------------------------------C---TTC
T ss_pred HHHhCCCC---EEeCCCCCCCcHHHHHHHHHHHHHhCC-----------------------------------C---CCC
Confidence 77765665 2455446677751 1122223333320 0 112
Q ss_pred EEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCC--hHHHHHH---
Q 011979 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEK--- 334 (473)
Q Consensus 260 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~l~~~--- 334 (473)
.+.|+|-+ ..=..-++.++..+ ++.+.++|.... .+.+.+.
T Consensus 159 kva~vGD~--~rva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~~~ 204 (323)
T 3gd5_A 159 KLAYVGDG--NNVAHSLLLGCAKV--------------------------------GMSIAVATPEGFTPDPAVSARASE 204 (323)
T ss_dssp EEEEESCC--CHHHHHHHHHHHHH--------------------------------TCEEEEECCTTCCCCHHHHHHHHH
T ss_pred EEEEECCC--CcHHHHHHHHHHHc--------------------------------CCEEEEECCCcccCCHHHHHHHHH
Confidence 78899987 22244555666553 578999985422 1333333
Q ss_pred -HHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEe
Q 011979 335 -IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (473)
Q Consensus 335 -~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~ 368 (473)
+++.| ..+.+. +++.+.+..||+....
T Consensus 205 ~a~~~g-~~v~~~------~d~~eav~~aDvvyt~ 232 (323)
T 3gd5_A 205 IAGRTG-AEVQIL------RDPFEAARGAHILYTD 232 (323)
T ss_dssp HHHHHT-CCEEEE------SCHHHHHTTCSEEEEC
T ss_pred HHHHcC-CeEEEE------CCHHHHhcCCCEEEEe
Confidence 33444 244443 6788899999999983
No 105
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=34.84 E-value=1.7e+02 Score=23.18 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=65.4
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCCCCCCcHHHHHHHh--cCC
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFG--CGL 389 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~~e~~p~kv~Eama--~G~ 389 (473)
+.+++|+.+.+. ...+.+.+++.|. .|... -+.++....+.. .|++++=...+. ..-|..+++.+. ..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~---~~~~~a~~~l~~~~~~dlvi~D~~l~~-~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGY-TVEIA---LTGEAAVEKVSGGWYPDLILMDIELGE-GMDGVQTALAIQQISEL 79 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC-EEEEE---SSHHHHHHHHHTTCCCSEEEEESSCSS-SCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCC-EEEEe---cChHHHHHHHhcCCCCCEEEEeccCCC-CCCHHHHHHHHHhCCCC
Confidence 467888886543 3566777777764 34333 235666666643 588887321111 123555555544 478
Q ss_pred cEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 390 PVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 390 PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
|+|.... . ...+....+..+++.. +.+++...|..++.
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 8887542 2 2334555677788886 69999999998877
No 106
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=34.79 E-value=42 Score=30.68 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.++|++.+.+.|..|. -.....+..|.+. |++|+++...
T Consensus 1 m~~~k~IllgvTGaiaa-~k~~~ll~~L~~~-g~eV~vv~T~ 40 (209)
T 3zqu_A 1 MSGPERITLAMTGASGA-QYGLRLLDCLVQE-EREVHFLISK 40 (209)
T ss_dssp CCSCSEEEEEECSSSCH-HHHHHHHHHHHHT-TCEEEEEECH
T ss_pred CCCCCEEEEEEECHHHH-HHHHHHHHHHHHC-CCEEEEEECc
Confidence 88888888888886543 3344455666665 9999999743
No 107
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=32.78 E-value=1.8e+02 Score=22.92 Aligned_cols=108 Identities=10% Similarity=-0.004 Sum_probs=62.8
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc---
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC--- 387 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~-~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~--- 387 (473)
...+++|+.+.+. ...+.+.++.. +...+.... +.++....+.. .|++++=. .....-|..+++.+..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~dlvi~d~--~l~~~~g~~~~~~l~~~~~ 82 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFD---DGLDVLKFLQHNKVDAIFLDI--NIPSLDGVLLAQNISQFAH 82 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEES---CHHHHHHHHHHCCCSEEEECS--SCSSSCHHHHHHHHTTSTT
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhCCCCEEEEec--CCCCCCHHHHHHHHHccCC
Confidence 3578888887653 35566666665 332232322 35566665554 58888721 1222345677777754
Q ss_pred CCcEEEe-cc-CccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 388 GLPVCAV-SY-SCIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 388 G~PvI~~-~~-~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
..|||.. .. ....+.+..+..+++.. +.+++...|..++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 83 KPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 3456544 22 23344455677888886 68899999988876
No 108
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=32.31 E-value=1.3e+02 Score=28.73 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=55.8
Q ss_pred CcEEEecCCCCcc--cHHHHHhcCcEEEEeccCCC-CCCCcHHHHHHHhcCCcEEEeccCccccce-ecCCce-EEeCCH
Q 011979 341 KRVAFRTMWLSAE--DYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEELV-KVDKNG-LLFSSS 415 (473)
Q Consensus 341 ~~V~~~g~~v~~~--~i~~~l~~adi~v~~~~~s~-~e~~p~kv~Eama~G~PvI~~~~~~~~e~i-~~~~~G-~~~~~~ 415 (473)
++|.|.|..+|.+ .....+..||++|+.- +|. -.++. .+.++...|.|+|..+-......- .+...- .+..+.
T Consensus 175 P~IV~FGE~lp~~~~~~~~~~~~aDlllviG-TSl~V~Paa-~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~ 252 (285)
T 3glr_A 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILG-TSLEVEPFA-SLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDV 252 (285)
T ss_dssp EEECCTTSBCCGGGGGHHHHHHHCSEEEEES-CCCCEETTG-GGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCH
T ss_pred CcEEEeCCcCCHHHHHHHHHHhcCCEEEEeC-CCCccccHH-HHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCH
Confidence 5788888767653 3345678899999842 331 12221 233566678898887643322110 111222 333577
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 416 SELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 416 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
++....|.+.+. ..++.+.+-+...+
T Consensus 253 ~~~~~~L~~~lg----w~~el~~~~~~~~~ 278 (285)
T 3glr_A 253 VHGVESLVELLG----WTEEMRDLVQRETG 278 (285)
T ss_dssp HHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHhhHh
Confidence 777777777765 35566665555443
No 109
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=32.27 E-value=1.7e+02 Score=23.22 Aligned_cols=90 Identities=10% Similarity=0.179 Sum_probs=51.8
Q ss_pred EEEEcCCCC----hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHh--cCCcE
Q 011979 319 FIITGKGPD----KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG--CGLPV 391 (473)
Q Consensus 319 l~ivG~g~~----~~~l~~~~~~~~l~-~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama--~G~Pv 391 (473)
++++|.|-. .+.+++.+++.+++ .|.-. +..++...+..+|+.+. +. ...+-..-++..+ .++||
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~----~~~~~~~~~~~~D~Ii~---t~-~l~~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAI----AETRLSEVVDRFDVVLL---AP-QSRFNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEE----CSTTHHHHTTTCSEEEE---CS-CCSSHHHHHHHHHHHHTCCE
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEe----cHHHHHhhcCCCCEEEE---CC-ccHHHHHHHHHHhcccCCCE
Confidence 566666643 25677778888874 34433 46788888899999887 22 2112223333332 58999
Q ss_pred EEeccCccccceecCCceEEeCCHHHHHHHHHHHHh
Q 011979 392 CAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFK 427 (473)
Q Consensus 392 I~~~~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~ 427 (473)
+..+.-.. | .-|.+++.+.+..+++
T Consensus 80 ~~I~~~~y---------~--~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 80 EIINTIDY---------G--TMNGEKVLQLAINAFN 104 (109)
T ss_dssp EECCHHHH---------H--HTCHHHHHHHHHHHHH
T ss_pred EEEChHHh---------c--cCCHHHHHHHHHHHHh
Confidence 88642111 1 1245666666665554
No 110
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=32.24 E-value=1.8e+02 Score=22.82 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=67.9
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc--------CcEEEEeccCCCCCCCcHHHHHHH
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--------ADLGVCLHTSSSGLDLPMKVVDMF 385 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l-~~V~~~g~~v~~~~i~~~l~~--------adi~v~~~~~s~~e~~p~kv~Eam 385 (473)
..+++|+.+.+. .+.+.+.+++.+. ..|..... .++....+.. .|+.++=. .....-|..+++.+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~dlii~D~--~l~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKS---GNQALDMLYGRNKENKIHPKLILLDI--NIPKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESS---HHHHHHHHHTCTTCCCCCCSEEEEET--TCTTSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECC---HHHHHHHHHhcccccCCCCCEEEEec--CCCCCCHHHHHHHH
Confidence 457788886643 4567777777775 35666544 6777777753 68888722 11222356777776
Q ss_pred h-----cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 386 G-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 386 a-----~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
. ..+|+|.... . ...+....+..+++.. +.+++.+.+.....
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 5 4678877532 2 2334455677788875 68889888776554
No 111
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=31.94 E-value=3.1e+02 Score=25.34 Aligned_cols=147 Identities=10% Similarity=0.127 Sum_probs=92.4
Q ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCCEEEEEEcCCCChHHHHHHHH
Q 011979 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (473)
Q Consensus 257 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~l~~~~~ 336 (473)
+..-++|.|++.....-.-+++-+= .-.+.+-+.|.... +.++. -
T Consensus 180 k~~d~iyggsfrsg~re~kmve~lf--------------------------------dtgl~ieffg~~~~-~qfkn--p 224 (351)
T 1jg7_A 180 KTLDVIYGGSFRSGQRESKMVEFLF--------------------------------DTGLNIEFFGNARE-KQFKN--P 224 (351)
T ss_dssp CCEEEEEECCCGGGTTHHHHHHHHS--------------------------------SCSSCEEEESSCCG-GGCCC--T
T ss_pred ceeeeeeccccccCchHHHHHHHHH--------------------------------hcCcceeeecchhH-HhccC--C
Confidence 4457999999988777666655432 23456667775431 11110 0
Q ss_pred HcCC-CcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCC-CcHHHHHHHhcCCcEEEec-cCccccceecCCceEEeC
Q 011979 337 RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD-LPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGLLFS 413 (473)
Q Consensus 337 ~~~l-~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~-~p~kv~Eama~G~PvI~~~-~~~~~e~i~~~~~G~~~~ 413 (473)
++.. .-=.|.|. +|..++.+--+.|-+.+..-...+... ....+-|+||+---.+.-. ...-..++. + .-+.++
T Consensus 225 ~~pwt~~pvf~gk-i~~~~~~~~ns~a~a~~i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~~-~-a~fyv~ 301 (351)
T 1jg7_A 225 KYPWTKAPVFTGK-IPMNMVSEKNSQAIAALIIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRIIN-D-ARFYVN 301 (351)
T ss_dssp TSCCSSCCEEEEC-CCGGGHHHHHTTEEEEEECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSCS-C-GGGEEC
T ss_pred CCCCcCCCccCCc-CCHHHHhhccccceEEEEeccccccCCeecHHHHHHHhhhhHhhhhcccCccccccc-C-ceeEec
Confidence 1111 23567888 999999888888777777422223322 4668999999876655544 333344443 3 347888
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011979 414 SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 445 (473)
Q Consensus 414 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 445 (473)
+-.+|.+.+.++-++ ...|.++-.-..+
T Consensus 302 nr~elid~in~~k~~----~~~r~e~l~~qh~ 329 (351)
T 1jg7_A 302 NRAELIDRVNELKHS----DVLRKEMLSIQHD 329 (351)
T ss_dssp SHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhccch----HHHHHHHHHHHHH
Confidence 999999999999885 7777666544443
No 112
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=31.75 E-value=1.4e+02 Score=29.80 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCC----CC----------------------cccHHHHHhcCcEEEE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW----LS----------------------AEDYPLLLGSADLGVC 367 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~----v~----------------------~~~i~~~l~~adi~v~ 367 (473)
.++.+++++|.|.--...-+++..+|.++|.+.... .. ..++.+.+..+|+++-
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG 269 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIG 269 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEE
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEE
Confidence 467899999999766666777777787788887653 11 2348999999999998
Q ss_pred eccCCCCCCCcHHHHHHHhcCCcEEEe
Q 011979 368 LHTSSSGLDLPMKVVDMFGCGLPVCAV 394 (473)
Q Consensus 368 ~~~~s~~e~~p~kv~Eama~G~PvI~~ 394 (473)
. |..--+.--+++.|+ ..|||..
T Consensus 270 ~---Sap~l~t~emVk~Ma-~~pIIfa 292 (388)
T 1vl6_A 270 V---SRGNILKPEWIKKMS-RKPVIFA 292 (388)
T ss_dssp C---SCSSCSCHHHHTTSC-SSCEEEE
T ss_pred e---CCCCccCHHHHHhcC-CCCEEEE
Confidence 3 322234556666665 3555543
No 113
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.08 E-value=70 Score=27.73 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCc----cccceecCCc------eEEeCCHHHHHHHHHHHH
Q 011979 357 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKN------GLLFSSSSELADQLLMLF 426 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~----~~e~i~~~~~------G~~~~~~~~la~~i~~l~ 426 (473)
..+..||++|.... ....|...-+-=|.+.|+||++..... +.-++ .+.+ -+.+ |.+++...|..++
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~-~g~~~~~~~~~~~y-~~~el~~~l~~~~ 149 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI-RGAADGSRFQVWDY-AEGEVETMLDRYF 149 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHH-HHTCCSSSEEEEEC-CTTTHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhh-cccCccceeEEEec-CHHHHHHHHHHHH
Confidence 67999999999542 222222333444789999999963222 11111 1111 1223 6777888887777
Q ss_pred hC
Q 011979 427 KG 428 (473)
Q Consensus 427 ~~ 428 (473)
..
T Consensus 150 ~~ 151 (165)
T 2khz_A 150 EA 151 (165)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 114
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=30.94 E-value=1.3e+02 Score=28.53 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=45.0
Q ss_pred CcEEEecCCCCcccHH----------------HHHhcCcEEEEeccCCCCCCCcH-HHHHHHhcCCcEEEeccCccccce
Q 011979 341 KRVAFRTMWLSAEDYP----------------LLLGSADLGVCLHTSSSGLDLPM-KVVDMFGCGLPVCAVSYSCIEELV 403 (473)
Q Consensus 341 ~~V~~~g~~v~~~~i~----------------~~l~~adi~v~~~~~s~~e~~p~-kv~Eama~G~PvI~~~~~~~~e~i 403 (473)
++|.+.|.++|.+... +....+|++|..= +|.. ..|. .+.++...|.|+|..+.......-
T Consensus 175 P~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviG-TSl~-V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~ 252 (289)
T 1q1a_A 175 PAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVG-TSLA-VYPFASLPEEIPRKVKRVLCNLETVGDFK 252 (289)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEES-CCCC-EETTTHHHHHSCTTSEEEEESSSCCTHHH
T ss_pred CCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEc-cCCC-hhhHHHHHHHHhcCCCEEEEECCCcccCC
Confidence 5777777766654322 2367899999952 2321 1222 345555569999988754432110
Q ss_pred -ecCCceEEe-CCHHHHHHHHHHHHh
Q 011979 404 -KVDKNGLLF-SSSSELADQLLMLFK 427 (473)
Q Consensus 404 -~~~~~G~~~-~~~~~la~~i~~l~~ 427 (473)
......+.+ .+.++....|.+.+.
T Consensus 253 ~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 253 ANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp HSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred CCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 111123344 467666666655544
No 115
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=30.84 E-value=1.8e+02 Score=22.34 Aligned_cols=106 Identities=8% Similarity=0.096 Sum_probs=64.1
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----cC
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CG 388 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-----~G 388 (473)
.+++++.+.+. ...+....+..+...|.... +.++....+.. .|+.++=. .....-|..+++.+. ..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~---~~~~a~~~~~~~~~dlvl~D~--~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAG---DGEQGMKIMAQNPHHLVISDF--NMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCS---SHHHHHHHHHTSCCSEEEECS--SSCSSCHHHHHHHHTTCTTSTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecC---CHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHhcCccccC
Confidence 56788886543 34566666665543444432 35666666654 58887721 111224567777764 35
Q ss_pred CcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 389 LPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 389 ~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.|+|.... +. ..+....+..+++.. +.+++...|..++.
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 78877542 22 234455677888875 68899999888765
No 116
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=29.68 E-value=45 Score=32.05 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=47.8
Q ss_pred CEEEEEEc-CCCChHHHHHHHHHcCCCcEEEecCCCCc------------------------ccHHHHHhcCcEEEEecc
Q 011979 316 RLLFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLSA------------------------EDYPLLLGSADLGVCLHT 370 (473)
Q Consensus 316 ~~~l~ivG-~g~~~~~l~~~~~~~~l~~V~~~g~~v~~------------------------~~i~~~l~~adi~v~~~~ 370 (473)
.+++.++| .|.--..+.+.+.+. +.+.+.|. +++ .++.+++..+|+.|-.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~-vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDF-- 95 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR--KDVELCAV-LVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDF-- 95 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEE-BCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEEC--
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEE-EecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEc--
Confidence 48999999 775445555555433 35555554 222 3688888999999862
Q ss_pred CCCCCCCcHHHHHHHhcCCcEEEeccC
Q 011979 371 SSSGLDLPMKVVDMFGCGLPVCAVSYS 397 (473)
Q Consensus 371 ~s~~e~~p~kv~Eama~G~PvI~~~~~ 397 (473)
+..+..---+..++..|+|+|+..+|
T Consensus 96 -T~p~a~~~~~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 96 -SQPQASVLYANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp -SCHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 22211122345678899999996554
No 117
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=29.56 E-value=1.7e+02 Score=27.86 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=46.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhcCCcE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~G~Pv 391 (473)
.|+++++-+-+ ++.+..++.+++++++++ ..++.+++.. .|+++... |... =.-.+.+|+.+|++|
T Consensus 46 ~~~~~lvav~d-~~~~~a~~~a~~~g~~~~--------y~d~~ell~~~~iDaV~I~t-P~~~--H~~~~~~al~aGkhV 113 (350)
T 4had_A 46 AENCVVTAIAS-RDLTRAREMADRFSVPHA--------FGSYEEMLASDVIDAVYIPL-PTSQ--HIEWSIKAADAGKHV 113 (350)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHHTCSEE--------ESSHHHHHHCSSCSEEEECS-CGGG--HHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHHcCCCee--------eCCHHHHhcCCCCCEEEEeC-CCch--hHHHHHHHHhcCCEE
Confidence 47888876654 556778888999986431 3667777865 68888732 2211 123678899999999
Q ss_pred EEe
Q 011979 392 CAV 394 (473)
Q Consensus 392 I~~ 394 (473)
++=
T Consensus 114 l~E 116 (350)
T 4had_A 114 VCE 116 (350)
T ss_dssp EEC
T ss_pred EEe
Confidence 985
No 118
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=29.28 E-value=1.3e+02 Score=23.90 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=33.3
Q ss_pred EEEEEcCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEE
Q 011979 318 LFIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 367 (473)
Q Consensus 318 ~l~ivG~g~~~----~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~ 367 (473)
-++++|.|-.. +.+++.+++.|++ +.+.. .+..++...+..+|++++
T Consensus 6 Ill~Cg~G~sTS~l~~k~~~~~~~~gi~-~~i~a--~~~~~~~~~~~~~Dvil~ 56 (106)
T 1e2b_A 6 IYLFSSAGMSTSLLVSKMRAQAEKYEVP-VIIEA--FPETLAGEKGQNADVVLL 56 (106)
T ss_dssp EEEECSSSTTTHHHHHHHHHHHHHSCCS-EEEEE--ECSSSTTHHHHHCSEEEE
T ss_pred EEEECCCchhHHHHHHHHHHHHHHCCCC-eEEEE--ecHHHHHhhccCCCEEEE
Confidence 46777877543 5778888888885 33321 345778888899999997
No 119
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=29.01 E-value=19 Score=31.78 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=26.3
Q ss_pred HHHhcCcEEEEeccCC-CCCCCcHHHHHHHhcCCcEEEec
Q 011979 357 LLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s-~~e~~p~kv~Eama~G~PvI~~~ 395 (473)
..+..||++|...... ...|...-+.=|.|.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 3478999999854322 22223345556899999999984
No 120
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=28.66 E-value=2.3e+02 Score=22.72 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=65.4
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHh---------cCcEEEEeccCCCCCCCcHHHHH
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG---------SADLGVCLHTSSSGLDLPMKVVD 383 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~-~V~~~g~~v~~~~i~~~l~---------~adi~v~~~~~s~~e~~p~kv~E 383 (473)
+..+++|+.+.+. ...++..++..+.. .|.... +.++....+. ..|+.++=.. -...-|..+++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILR---DGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEEC---SHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeC---CHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHH
Confidence 3578888887643 34566666665542 344332 3566667766 3688887211 11223556666
Q ss_pred HHh-----cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 384 MFG-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 384 ama-----~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
.+. ..+|||.... . ...+....+..|++.. +.+++...|..+..
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 664 3578877532 2 2334456677899986 68889888887754
No 121
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=28.41 E-value=1.4e+02 Score=29.09 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred CEEEEEE-cCCCChHHHHHHHHHcCCCcEEEecCCCCc-ccHHHHHhcCcEEE--EeccCC--CC--CCCc-HHHHHHHh
Q 011979 316 RLLFIIT-GKGPDKESYEEKIRRLRLKRVAFRTMWLSA-EDYPLLLGSADLGV--CLHTSS--SG--LDLP-MKVVDMFG 386 (473)
Q Consensus 316 ~~~l~iv-G~g~~~~~l~~~~~~~~l~~V~~~g~~v~~-~~i~~~l~~adi~v--~~~~~s--~~--e~~p-~kv~Eama 386 (473)
++.+.+= |.....+.+.+.+..++.++|- +|.++.. .+..+++....+.+ +|. ++ .+ .+++ -.+-+.+.
T Consensus 193 gl~~~~HagE~~~~~~i~~al~~lg~~rIg-Hgv~l~~d~~l~~~l~~~~i~le~cP~-SN~~l~~~~~~~~hPi~~ll~ 270 (343)
T 3rys_A 193 GLRRIAHAGEEGPASYITEALDVLHVERID-HGIRCMEDTDVVQRLVAEQVPLTVCPL-SNVRLRAVDKLADHPLPEMLA 270 (343)
T ss_dssp TCEEEEEESSSSCHHHHHHHHHTSCCSEEE-ECGGGGGCHHHHHHHHHHTCCEEECHH-HHHHTTSSSCGGGCSHHHHHH
T ss_pred CCeEEEeeCCCCCHHHHHHHHhcCCcceee-eeeeecCChHHHHHHHhcCCCeeEchh-HHHHhCCCCCcccchHHHHHH
Confidence 3444433 4333345566666667766654 5665553 36777777766664 441 11 11 1221 25778899
Q ss_pred cCCcEEEe-ccCccccceecCCceEEeCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 387 CGLPVCAV-SYSCIEELVKVDKNGLLFSS-SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 387 ~G~PvI~~-~~~~~~e~i~~~~~G~~~~~-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
.|+||..+ |.++... + + .+++..+...+ .- +++...++..|+.+.+
T Consensus 271 ~Gv~V~l~TDdp~~~~-------~----~l~~E~~~a~~~~-~l---~~~~l~~l~~nsi~~s 318 (343)
T 3rys_A 271 IGLNVCVNSDDPAYFG-------G----YVDDNFEQLVKVL-EF---SVPEQATLAANSIRSS 318 (343)
T ss_dssp TTCCEEECCBSTTTTT-------C----CHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHS
T ss_pred CCCeEEEeCCCccccC-------C----CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHH
Confidence 99998665 4333211 1 2 33444444333 22 4777888999998865
No 122
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=28.05 E-value=67 Score=28.33 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCCCCeEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEee
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~-a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~ 62 (473)
|.+|++++|. |.++.+... +..|+++ |++|.+++....... .. ..+++++...
T Consensus 1 M~~m~~ilIt-----GatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~-~~--~~~~~~~~~D 54 (227)
T 3dhn_A 1 MEKVKKIVLI-----GASGFVGSALLNEALNR-GFEVTAVVRHPEKIK-IE--NEHLKVKKAD 54 (227)
T ss_dssp --CCCEEEEE-----TCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCC-CC--CTTEEEECCC
T ss_pred CCCCCEEEEE-----cCCchHHHHHHHHHHHC-CCEEEEEEcCcccch-hc--cCceEEEEec
Confidence 7777766543 445666654 4677776 999999876533211 11 2466655544
No 123
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.03 E-value=1.1e+02 Score=24.48 Aligned_cols=110 Identities=8% Similarity=0.013 Sum_probs=66.0
Q ss_pred CCCEEEEEEcCCCC-hHHHHHHHHHcC-CCcEEEecCCCCcccHHHHH---hcCcEEEEeccCCCCCCCcHHHHHHHh--
Q 011979 314 YPRLLFIITGKGPD-KESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLL---GSADLGVCLHTSSSGLDLPMKVVDMFG-- 386 (473)
Q Consensus 314 ~~~~~l~ivG~g~~-~~~l~~~~~~~~-l~~V~~~g~~v~~~~i~~~l---~~adi~v~~~~~s~~e~~p~kv~Eama-- 386 (473)
.+..+++|+.+.+. ...+.+.++..+ ..-+.+... .+.+..+. ...|++++=.. ....-|..+++.+.
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~---~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGR---AAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRL 92 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCC---HHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCH---HHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHh
Confidence 45678999987653 356777777776 432333222 33444444 35788888221 11122445555543
Q ss_pred -cCCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 -CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 -~G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..+|||.... . ...+.+..+..+++.. +.++|...|..++..
T Consensus 93 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3678887542 2 2234456677888886 699999999988774
No 124
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=27.82 E-value=2.1e+02 Score=22.07 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=64.6
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc-----
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC----- 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~----- 387 (473)
..+++|+.+.+. ...+.+..++.+. .|.... +.++....+.. .|+.++-. .....-|..+++.+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHW-QVEIAH---NGFDAGIKLSTFEPAIMTLDL--SMPKLDGLDVIRSLRQNKVAN 79 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHHTCCSEEEEES--CBTTBCHHHHHHHHHTTTCSS
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCc-EEEEeC---CHHHHHHHHHhcCCCEEEEec--CCCCCCHHHHHHHHHhcCccC
Confidence 467888886543 3556677777664 444443 35666666643 57777721 2222346677777653
Q ss_pred CCcEEEeccC---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYS---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..|+|.+... ...+.+..+..+++.. +.+++.+.|......
T Consensus 80 ~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 80 QPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 3455555432 2334556677888886 699999999988764
No 125
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=27.80 E-value=97 Score=29.94 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhcCCcE
Q 011979 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 391 (473)
Q Consensus 314 ~~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~G~Pv 391 (473)
.++++++=+-+ ++.+..++.+++++.+++ ..++.+++.. .|+++.. +|... =.-.+.+|+.+|++|
T Consensus 54 ~~~~~lvav~d-~~~~~a~~~a~~~g~~~~--------y~d~~ell~~~~iDaV~Ia-tP~~~--H~~~a~~al~aGkhV 121 (393)
T 4fb5_A 54 VERPRLVHLAE-ANAGLAEARAGEFGFEKA--------TADWRALIADPEVDVVSVT-TPNQF--HAEMAIAALEAGKHV 121 (393)
T ss_dssp SCCCEEEEEEC-C--TTHHHHHHHHTCSEE--------ESCHHHHHHCTTCCEEEEC-SCGGG--HHHHHHHHHHTTCEE
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCCee--------cCCHHHHhcCCCCcEEEEC-CChHH--HHHHHHHHHhcCCeE
Confidence 36677765554 445567888888886421 3667778865 6777772 22211 123678999999999
Q ss_pred EEe
Q 011979 392 CAV 394 (473)
Q Consensus 392 I~~ 394 (473)
++=
T Consensus 122 l~E 124 (393)
T 4fb5_A 122 WCE 124 (393)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 126
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=27.37 E-value=1e+02 Score=27.89 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecC-CCCCCcccccCCCEEEEEee
Q 011979 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYG-GSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 3 ~~~~~~i~~~~~~g~s~r~~~~a~~L~~~-~g~eV~vi~~~-~~~~~~~~~~~~~i~i~~~~ 62 (473)
.|+++.|++.|. ..-++.....+.+. .+++|..+... ...+..+.....||.++.+.
T Consensus 2 ~m~ki~vl~sG~---g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 2 HMKRLAVFASGS---GTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFS 60 (212)
T ss_dssp CCEEEEEECCSS---CHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECC
T ss_pred CCcEEEEEEECC---cHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeC
Confidence 456788777775 12233333344432 14676544432 22222233456788888776
No 127
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=26.64 E-value=1.5e+02 Score=28.84 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=56.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCC---------CcccHHHHHhcCcEEEE--eccCCCCCCCcHHHHHH
Q 011979 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL---------SAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDM 384 (473)
Q Consensus 316 ~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v---------~~~~i~~~l~~adi~v~--~~~~s~~e~~p~kv~Ea 384 (473)
+..+-|+|-|.--..+.+.++.+|. +|....+.. ...++.++++.||+.++ |.++....-+.-..+..
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~ 219 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFGM-KVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISL 219 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred CcEEEEECcchHHHHHHHhhcccCc-eeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhh
Confidence 4578999999766777788888775 455544311 12467889999999988 33333333467789999
Q ss_pred HhcCCcEEEeccC
Q 011979 385 FGCGLPVCAVSYS 397 (473)
Q Consensus 385 ma~G~PvI~~~~~ 397 (473)
|--|.-+|-+.-|
T Consensus 220 mk~~a~lIN~aRG 232 (334)
T 3kb6_A 220 MKDGVYLINTARG 232 (334)
T ss_dssp SCTTEEEEECSCG
T ss_pred cCCCeEEEecCcc
Confidence 8888777776533
No 128
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.61 E-value=2.5e+02 Score=22.53 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=64.3
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---cCC
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGL 389 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~G~ 389 (473)
..+++|+.+.+. ...+....+..|. .|.... +.++....+.. .|++++-.. ....-|..+++.+. ..+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dliild~~--l~~~~g~~~~~~l~~~~~~~ 76 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGF-TVSSFA---SATEALAGLSADFAGIVISDIR--MPGMDGLALFRKILALDPDL 76 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---CHHHHHHTCCTTCCSEEEEESC--CSSSCHHHHHHHHHHHCTTS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCc-EEEEEC---CHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCC
Confidence 356788886543 3556667777664 344332 34555555543 588877221 12223455555553 478
Q ss_pred cEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 390 PVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 390 PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
|+|.... . ...+.+..+..+++.. +.+++...|..++..
T Consensus 77 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 77 PMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp CEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 8887632 2 2334555677888885 689999999988774
No 129
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.72 E-value=2.3e+02 Score=21.74 Aligned_cols=107 Identities=13% Similarity=-0.030 Sum_probs=64.7
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-----~ 387 (473)
..+++|+.+.+. .+.+.+..++.|. .|.... +.++....+.. .|+.++=.. ....-|..+++.+. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~ 76 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGF-QADYVM---SGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEK 76 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTE-EEEEES---SHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCC-CEEEEC---CHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccC
Confidence 367888886543 4567777777764 344433 35666666654 577777221 22234556666654 4
Q ss_pred CCcEEEeccCc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYSC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|...... .......+..+++.. +.++|.+++......
T Consensus 77 ~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 77 TSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp CCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 57888764221 134455566778875 699999999887664
No 130
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=25.56 E-value=2.4e+02 Score=22.04 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=64.3
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc-------CcEEEEeccCCCCCCCcHHHHHHHh--
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS-------ADLGVCLHTSSSGLDLPMKVVDMFG-- 386 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~-------adi~v~~~~~s~~e~~p~kv~Eama-- 386 (473)
.+++|+.+.+. ...+....+..+...|..... .++....+.. .|+.++=...+ ..-|..+++.+.
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~---~~~al~~~~~~~~~~~~~dlvllD~~mp--~~~G~~~~~~lr~~ 77 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACD---GQEAFDKVKELTSKGENYNMIFMDVQMP--KVDGLLSTKMIRRD 77 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHHHHHHHTCCCSEEEECSCCS--SSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECC---HHHHHHHHHHHHhcCCCCCEEEEeCCCC--CCChHHHHHHHHhh
Confidence 45677776543 355666666666544554432 4555555543 58888721111 123556666654
Q ss_pred --cCCcEEEec-cCc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 --CGLPVCAVS-YSC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 --~G~PvI~~~-~~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
...|||... ... ..+....+..|++.. +.+++.+.|..++..
T Consensus 78 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 78 LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 257887653 322 234556677899986 689999999888764
No 131
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=25.42 E-value=2.7e+02 Score=24.11 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCc---EEEEeccCCC-CCCCcHHHHHHHhcCCcEEEec
Q 011979 326 PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD---LGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 326 ~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~ad---i~v~~~~~s~-~e~~p~kv~Eama~G~PvI~~~ 395 (473)
.....+.+.++++|.. +.++....+.+++...+...+ +++.|-..+. ..++-..+++++..|+|+++.-
T Consensus 11 s~~~~i~~~l~~~G~~-~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC 83 (192)
T 1i1q_B 11 SFTWNLADQLRTNGHN-VVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGIC 83 (192)
T ss_dssp SSHHHHHHHHHHTTCE-EEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEET
T ss_pred cHHHHHHHHHHHCCCe-EEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEEC
Confidence 4556678888888863 444433244466666665433 5555311111 1234456888888999999874
No 132
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.40 E-value=1.3e+02 Score=22.47 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=60.4
Q ss_pred EEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----cCC
Q 011979 318 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 389 (473)
Q Consensus 318 ~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-----~G~ 389 (473)
+++++.+.+. .+.+.+..+..|. +|.... +.++....+.. .|+.++-.. ....-+..+++.+. ..+
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~-~v~~~~---~~~~~~~~l~~~~~dlii~d~~--~~~~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGF-KVIWLV---DGSTALDQLDLLQPIVILMAWP--PPDQSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC-EEEEES---CHHHHHHHHHHHCCSEEEEECS--TTCCTHHHHHHHHHHTCCCSSC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCc-EEEEec---CHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhccccCCC
Confidence 5677776543 3556666776665 444433 35565555554 588877221 12223556677664 467
Q ss_pred cEEEec-cCccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 390 PVCAVS-YSCIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 390 PvI~~~-~~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
|+|... .....+....+..+++.. +.+++...+..++.
T Consensus 77 ~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 77 PLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 887753 222224555566777775 57888888876644
No 133
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=25.24 E-value=2.8e+02 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=21.8
Q ss_pred CCCCCeEEEEEecCCCC-ChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGR-SPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~-s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.+++.++|.--+| + .-...-....++++ |++|.+++..
T Consensus 1 ~~~~~vL~v~aHPD--De~l~~Ggtia~~~~~-G~~V~vv~lT 40 (242)
T 2ixd_A 1 MSGLHILAFGAHAD--DVEIGMAGTIAKYTKQ-GYEVGICDLT 40 (242)
T ss_dssp -CCCSEEEEESSTT--HHHHHHHHHHHHHHHT-TCCEEEEEEE
T ss_pred CCCccEEEEEeCCC--hHHHhHHHHHHHHHHC-CCeEEEEEEc
Confidence 66666555554454 1 11223334556666 9999999844
No 134
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.00 E-value=1.9e+02 Score=22.83 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=63.0
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHhc--CCc
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC--GLP 390 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama~--G~P 390 (473)
..+++|+.+.+. ...+....+..+. .|.... +.++....+.. .|++++-...+ ..-|..+++.+.. ..|
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~~~~~~~dlvllD~~l~--~~~g~~l~~~l~~~~~~~ 77 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI-SIDLAY---NCEEAIGKIFSNKYDLIFLEIILS--DGDGWTLCKKIRNVTTCP 77 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---SHHHHHHHHHHCCCSEEEEESEET--TEEHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC-EEEEEC---CHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHHHHHHccCCCCC
Confidence 357888886643 3456666665554 344332 34555555553 58888721111 1134566666542 678
Q ss_pred EEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 391 VCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 391 vI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
+|.... . ...+.+..+..+++.. +.+++...+..++.
T Consensus 78 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 78 IVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 877532 2 2334556678899886 68899999888765
No 135
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.98 E-value=1.4e+02 Score=23.56 Aligned_cols=106 Identities=9% Similarity=0.049 Sum_probs=63.8
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---cCC
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGL 389 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~G~ 389 (473)
..+++|+.+.+. ...+.+.++..|. .|.... +.++....+.. .|++++=. ....-+..+++.+. ..+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~ 76 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGF-NVIWAK---NEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDT 76 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTC-EEEEES---SHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC-EEEEEC---CHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCC
Confidence 357788876543 3556666666664 344332 35666666655 57887722 11112344454443 368
Q ss_pred cEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 390 PVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 390 PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
|+|.... .. ..+....+..+++.. +.++|...|..++..
T Consensus 77 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 77 KVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 8887532 22 234455677888875 699999999999875
No 136
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.97 E-value=2.4e+02 Score=21.88 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=63.0
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCC---CCCCcHHHHHHHh---c
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSS---GLDLPMKVVDMFG---C 387 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~---~e~~p~kv~Eama---~ 387 (473)
.+++|+.+.+. ...+.+.++..+. .|.... +.++....+.. .|++++-..... ...-+..+++.+. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFS-KVITLS---SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSS-EEEEEC---CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCc-EEEEeC---CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCc
Confidence 57788886542 3445555555553 344333 35666676665 467666211110 0223455555543 4
Q ss_pred CCcEEEecc-C---ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~-~---~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|.... . ...+.+..+..+++.. +.+++...|..++..
T Consensus 80 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 788887532 2 2334455677888875 689999999998875
No 137
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=24.85 E-value=2.2e+02 Score=21.55 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=61.3
Q ss_pred EEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHh-----cCC
Q 011979 318 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 389 (473)
Q Consensus 318 ~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama-----~G~ 389 (473)
+++|+.+.+. .+.+....+..+. .+.... +..+....+. ..|+.++=...+ ..-|..+++.+. ..+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~-~v~~~~---~~~~a~~~~~~~~~dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGY-ETLQTR---EGLSALSIARENKPDLILMDIQLP--EISGLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC-EEEEES---CHHHHHHHHHHHCCSEEEEESBCS--SSBHHHHHHHHHHSTTTTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCc-EEEEeC---CHHHHHHHHhcCCCCEEEEeCCCC--CCCHHHHHHHHHcCccccCC
Confidence 5677776543 3556666666664 233222 2455555554 368888732211 223556666664 367
Q ss_pred cEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 390 PVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 390 PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
|+|..... ...+....+..+++.. +.+++...+..++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp CEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 88876422 2234445677888886 689999999888764
No 138
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=24.68 E-value=68 Score=28.35 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=44.1
Q ss_pred cHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEEeccCcc-ccceecC-C-ceEEeCCHHHHHHHHHHHHhC
Q 011979 354 DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI-EELVKVD-K-NGLLFSSSSELADQLLMLFKG 428 (473)
Q Consensus 354 ~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~~~~~~~-~e~i~~~-~-~G~~~~~~~~la~~i~~l~~~ 428 (473)
.-.-+...||.+|.. +. +.+-=..++|++..++||++.+.-+. ..++... . .-.+++|++++.+.|.+.+..
T Consensus 100 Rk~~m~~~sda~Ivl--pG-g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 100 RDNINALSSNVLVAV--GM-GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp SCCCCGGGCSEEEEE--SC-CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCEEEEe--cC-CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 334456678988884 22 21112278899999999999875221 1122111 1 223456899999999887753
No 139
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.50 E-value=2.4e+02 Score=21.65 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=63.6
Q ss_pred EEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----cCC
Q 011979 318 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 389 (473)
Q Consensus 318 ~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-----~G~ 389 (473)
+++++.+.+. ...+....+..|. .|.... +.++....+.. .|+.++=. .-...-|..+++.+. ...
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~-~v~~~~---~~~~al~~l~~~~~dlvllD~--~~p~~~g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGY-EVIEAE---NGQIALEKLSEFTPDLIVLXI--MMPVMDGFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHTTBCCSEEEECS--CCSSSCHHHHHHHHHTSTTTTTS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc-EEEEeC---CHHHHHHHHHhcCCCEEEEec--cCCCCcHHHHHHHHHhcccccCC
Confidence 5677776543 3456666666664 333332 35666666654 58887721 112224667777763 368
Q ss_pred cEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 390 PVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 390 PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
|+|.... +. ..+....|..+++.. +.+++...+..+++
T Consensus 78 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 8887543 22 233455677888886 68999999988764
No 140
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=24.37 E-value=97 Score=29.78 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=45.5
Q ss_pred CCEEEEEEcCCCChH-HHHHHHHHcCCCcEEEecCC--------C-CcccHHHHHhc---CcEEEEeccCCCCCCCcHHH
Q 011979 315 PRLLFIITGKGPDKE-SYEEKIRRLRLKRVAFRTMW--------L-SAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKV 381 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~-~l~~~~~~~~l~~V~~~g~~--------v-~~~~i~~~l~~---adi~v~~~~~s~~e~~p~kv 381 (473)
..+++-|+|-|.--. .....++.. +.+.+.+-+ + ...++.+++.. .|+++.. +....-.-.+
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~~--~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~---tp~~~H~~~~ 98 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAKN--ANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLC---MPPQYRYEAA 98 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHHC--TTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEEC---SCHHHHHHHH
T ss_pred CCceEEEEecCHHHHHHHHHHHHhC--CCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEe---CCcHHHHHHH
Confidence 358999999885332 233344443 244444320 1 14578888876 7888873 2111112367
Q ss_pred HHHHhcCCcEEEe
Q 011979 382 VDMFGCGLPVCAV 394 (473)
Q Consensus 382 ~Eama~G~PvI~~ 394 (473)
..|+..|++|++-
T Consensus 99 ~~al~aGkhVl~E 111 (330)
T 4ew6_A 99 YKALVAGKHVFLE 111 (330)
T ss_dssp HHHHHTTCEEEEC
T ss_pred HHHHHcCCcEEEe
Confidence 8899999999975
No 141
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=24.25 E-value=2.7e+02 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=20.8
Q ss_pred CCCC-CeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCC
Q 011979 1 MGRR-GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGS 44 (473)
Q Consensus 1 m~~~-~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~ 44 (473)
|.++ |+++|+..+ .+.... ..-|+++|++|.+++....
T Consensus 1 M~~~~k~l~Il~~~-----~~~~~i-~~aa~~lG~~vv~v~~~~~ 39 (425)
T 3vot_A 1 MTKRNKNLAIICQN-----KHLPFI-FEEAERLGLKVTFFYNSAE 39 (425)
T ss_dssp -CCCCCEEEEECCC-----TTCCHH-HHHHHHTTCEEEEEEETTS
T ss_pred CCCCCcEEEEECCC-----hhHHHH-HHHHHHCCCEEEEEECCCc
Confidence 7787 555554332 222232 3334446999999876543
No 142
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=24.14 E-value=95 Score=28.31 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=48.6
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcE--EEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRV--AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V--~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
-+++++|..+. ++.+++.++.-|...| +|+|+-+.-..+ .-+..=|++++. ....+ -..+.||...|.|+|+
T Consensus 69 ~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~-~~f~~PdlliV~--Dp~~e--~~ai~EA~~l~IPvIa 143 (208)
T 1vi6_A 69 SKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPML-SEYREPEVVFVN--DPAID--KQAVSEATAVGIPVVA 143 (208)
T ss_dssp GGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTS-TTCCCCSEEEES--CTTTT--HHHHHHHHHTTCCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhh-HhhCCCCEEEEE--CCCcc--hhHHHHHHHhCCCEEE
Confidence 47788886543 3556677777764222 233332222221 224567888872 22333 4589999999999999
Q ss_pred e-ccCccccce
Q 011979 394 V-SYSCIEELV 403 (473)
Q Consensus 394 ~-~~~~~~e~i 403 (473)
- |+.+..+.|
T Consensus 144 lvDTn~~p~~V 154 (208)
T 1vi6_A 144 LCDSNNSSADV 154 (208)
T ss_dssp EECTTCCCTTC
T ss_pred EeCCCCCcccc
Confidence 6 565555555
No 143
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.90 E-value=2.6e+02 Score=21.85 Aligned_cols=105 Identities=8% Similarity=0.021 Sum_probs=58.9
Q ss_pred EEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----cC
Q 011979 317 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CG 388 (473)
Q Consensus 317 ~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama-----~G 388 (473)
.+++|+.+.+. ...+.+..+.. -.|.... +.++....+.. .|++++-..... .-|..+++.+. .+
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~--~~v~~~~---~~~~a~~~~~~~~~dlvi~D~~l~~--~~g~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE--YLVIESK---NEKEALEQIDHHHPDLVILDMDIIG--ENSPNLCLKLKRSKGLKN 76 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT--SEEEEES---SHHHHHHHHHHHCCSEEEEETTC--------CHHHHHHTSTTCTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc--ceEEEeC---CHHHHHHHHhcCCCCEEEEeCCCCC--CcHHHHHHHHHcCcccCC
Confidence 46778875542 23444444443 2344332 35666665543 588887322111 22445555554 56
Q ss_pred CcEEEecc----CccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 389 LPVCAVSY----SCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 389 ~PvI~~~~----~~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.|+|.... ....+....+..+++.. +.+++...|..++..
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp CCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 88887532 22344556677788886 699999999998773
No 144
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.82 E-value=2.6e+02 Score=22.19 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh-----
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG----- 386 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama----- 386 (473)
...+++|+.+.+. ...+.+..+..|. .|.... +.++....+.. .|+.++=.. -...-|..+++.+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~ 86 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGH-KVLCVN---GAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQAS 86 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--C-EEEEES---SHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCC-eEEEeC---CHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhc
Confidence 3468888886643 3456666666554 343332 35666666654 688887221 11223566776663
Q ss_pred --cCCcEEEeccCc----cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 --CGLPVCAVSYSC----IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 --~G~PvI~~~~~~----~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..+|+|...... ..+....+..+++.. +.+++.+.|..+...
T Consensus 87 ~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 87 GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 237888764322 233445677889886 699999999988653
No 145
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.68 E-value=2.8e+02 Score=22.14 Aligned_cols=108 Identities=11% Similarity=-0.005 Sum_probs=64.7
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---cC
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CG 388 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~G 388 (473)
...+++|+.+.+. ...+...++..+. .|.... +.++....+.. .|++++-.. ....-|..+++.+. ..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGC-NIITFT---SPLDALEALKGTSVQLVISDMR--MPEMGGEVFLEQVAKSYPD 79 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---CHHHHHHHHTTSCCSEEEEESS--CSSSCHHHHHHHHHHHCTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCC-eEEEeC---CHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHHhCCC
Confidence 4578888886643 3556666666554 344433 35666676665 588877221 11223455555553 47
Q ss_pred CcEEEecc-Cc---cccceecC-CceEEeC--CHHHHHHHHHHHHhC
Q 011979 389 LPVCAVSY-SC---IEELVKVD-KNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 389 ~PvI~~~~-~~---~~e~i~~~-~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
+|+|.... .. ..+.+..+ ..+++.. +.+++...|..++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 80 IERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp SEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 88887542 22 23334444 6788875 689999999988773
No 146
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=23.61 E-value=4.6e+02 Score=24.55 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=60.8
Q ss_pred CEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCC--CC--CCCcHHHHHHHh---
Q 011979 316 RLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SG--LDLPMKVVDMFG--- 386 (473)
Q Consensus 316 ~~~l~ivG~g~~--~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s--~~--e~~p~kv~Eama--- 386 (473)
.+.-+|+.+-|. .+++.+.+++++++.|.+..+--+.+.+..+.+.+.-++...+.. .| ..++..+.|.+.
T Consensus 125 GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr 204 (271)
T 3nav_A 125 GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQ 204 (271)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHH
Confidence 355566776653 367888899999988888877344678888888886555431111 22 235555555544
Q ss_pred --cCCcEEEeccCccc------cceecCCceEEeCC
Q 011979 387 --CGLPVCAVSYSCIE------ELVKVDKNGLLFSS 414 (473)
Q Consensus 387 --~G~PvI~~~~~~~~------e~i~~~~~G~~~~~ 414 (473)
..+||++- +|++ +.+..+..|+++.+
T Consensus 205 ~~~~~Pv~vG--fGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 205 QFDAPPALLG--FGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HTTCCCEEEC--SSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HhcCCCEEEE--CCCCCHHHHHHHHHcCCCEEEECH
Confidence 47899883 2222 25567788999984
No 147
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.22 E-value=2.4e+02 Score=23.96 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=40.6
Q ss_pred EEEEEcCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccH---HHHHhcCcEEEEeccCCCCCCC-cH-HHHHHHhcCC
Q 011979 318 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDY---PLLLGSADLGVCLHTSSSGLDL-PM-KVVDMFGCGL 389 (473)
Q Consensus 318 ~l~ivG~g~~~---~~l~~~~~~~~l~~V~~~g~~v~~~~i---~~~l~~adi~v~~~~~s~~e~~-p~-kv~Eama~G~ 389 (473)
++.++|.|... ..+......+|. ++.+... +..++ ...+..-|++|.. +.+|++- -. .+-.|-..|.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~-~~~~~~~--~~~~~~~~~~~~~~~d~~i~i--S~sG~t~~~~~~~~~ak~~g~ 115 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGI-RTTVLTE--GGSTLTITLANLRPTDLMIGV--SVWRYLRDTVAALAGAAERGV 115 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTC-CEEEECC--CTHHHHHHHHTCCTTEEEEEE--CCSSCCHHHHHHHHHHHHTTC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCC-CEEEecC--CchhHHHHHhcCCCCCEEEEE--eCCCCCHHHHHHHHHHHHCCC
Confidence 88999988654 344445555553 5666541 12333 3344567888884 2244321 11 2334556799
Q ss_pred cEEEec
Q 011979 390 PVCAVS 395 (473)
Q Consensus 390 PvI~~~ 395 (473)
|+|+-.
T Consensus 116 ~vi~IT 121 (187)
T 3sho_A 116 PTMALT 121 (187)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999864
No 148
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=23.03 E-value=2.9e+02 Score=27.22 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHhcCcEEEEeccCCCCCCCcH-HHHHHHhcCCcEEEeccCccccce-ecCCceEEe-CCHHHHHHHHHHHHhCCCCCHH
Q 011979 358 LLGSADLGVCLHTSSSGLDLPM-KVVDMFGCGLPVCAVSYSCIEELV-KVDKNGLLF-SSSSELADQLLMLFKGFPDDSD 434 (473)
Q Consensus 358 ~l~~adi~v~~~~~s~~e~~p~-kv~Eama~G~PvI~~~~~~~~e~i-~~~~~G~~~-~~~~~la~~i~~l~~~~~~~~~ 434 (473)
....||++|..- +| ...+|. .+.++...|.|+|..+......+- ......+.+ .+.+++...|...+.- .+
T Consensus 216 ~~~~aDllLviG-TS-l~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~----~~ 289 (361)
T 1q14_A 216 KHPQQPLVIVVG-TS-LAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW----QE 289 (361)
T ss_dssp ---CCCEEEEES-CC-CCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC----HH
T ss_pred hhccCCEEEEEC-CC-CCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC----hh
Confidence 355899999952 23 222332 345555569999988754432110 011223344 4777777776666552 44
Q ss_pred HHHHHHHHH
Q 011979 435 VLKKLRNGT 443 (473)
Q Consensus 435 ~~~~~~~~~ 443 (473)
...++....
T Consensus 290 ~l~~~~~~~ 298 (361)
T 1q14_A 290 DFEKILTAQ 298 (361)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 444444433
No 149
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=22.55 E-value=1.2e+02 Score=30.32 Aligned_cols=70 Identities=7% Similarity=-0.067 Sum_probs=44.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCc--EEEecCCCCcccHHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCc
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKR--VAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLP 390 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~--V~~~g~~v~~~~i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~P 390 (473)
++++++-+-+ .+.+..++.+++++.+. +.. ..++.+++. ..|+++.. +....-.-.+.+++..|++
T Consensus 107 ~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~~~------~~~~~~ll~~~~vD~V~ia---tp~~~h~~~~~~al~aGk~ 176 (433)
T 1h6d_A 107 QHSRIEALVS-GNAEKAKIVAAEYGVDPRKIYD------YSNFDKIAKDPKIDAVYII---LPNSLHAEFAIRAFKAGKH 176 (433)
T ss_dssp SSEEEEEEEC-SCHHHHHHHHHHTTCCGGGEEC------SSSGGGGGGCTTCCEEEEC---SCGGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEc-CCHHHHHHHHHHhCCCcccccc------cCCHHHHhcCCCCCEEEEc---CCchhHHHHHHHHHHCCCc
Confidence 5677765543 44566777788887632 322 245556666 68998883 2221123467789999999
Q ss_pred EEEe
Q 011979 391 VCAV 394 (473)
Q Consensus 391 vI~~ 394 (473)
|++-
T Consensus 177 Vl~E 180 (433)
T 1h6d_A 177 VMCE 180 (433)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9985
No 150
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=22.33 E-value=83 Score=28.60 Aligned_cols=42 Identities=14% Similarity=-0.053 Sum_probs=27.6
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~ 43 (473)
|.+.|++.+.+.|..+.-.+....+..|.+. |++|+++....
T Consensus 2 ~l~~k~IllgiTGsiaayk~~~~ll~~L~~~-g~eV~vv~T~~ 43 (207)
T 3mcu_A 2 SLKGKRIGFGFTGSHCTYEEVMPHLEKLIAE-GAEVRPVVSYT 43 (207)
T ss_dssp CCTTCEEEEEECSCGGGGTTSHHHHHHHHHT-TCEEEEEECC-
T ss_pred CCCCCEEEEEEEChHHHHHHHHHHHHHHHhC-CCEEEEEEehH
Confidence 3566778888888543222245666777776 99999997553
No 151
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=22.18 E-value=1.2e+02 Score=28.08 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=23.7
Q ss_pred CCCeEEEEEecC----CC-----CChhHHH--HHHHHHhhCCCcEEEEecCCC
Q 011979 3 RRGRACVVVLGD----LG-----RSPRMQY--QALSLARQMSLEVDVVAYGGS 44 (473)
Q Consensus 3 ~~~~~~i~~~~~----~g-----~s~r~~~--~a~~L~~~~g~eV~vi~~~~~ 44 (473)
.|++++|++.+. +. +..-.+. -...|.+ .|++|+++++.+.
T Consensus 8 ~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 8 LPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETGT 59 (247)
T ss_dssp CCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSSC
T ss_pred cCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 368888887762 21 1112221 2234445 4999999997643
No 152
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.06 E-value=73 Score=28.17 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~ 43 (473)
|.+|++++|+..+..|.+.++...+..-+++.|++|.++-...
T Consensus 3 ~~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 3 LTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp --CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 3456678877777655555555544333332489999887543
No 153
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=21.92 E-value=6.4e+02 Score=25.64 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=43.3
Q ss_pred ccHHHHHhcCcEEEEeccCCCCCCCcH--HHHHHHhc---C------CcEEEecc----C---cc----ccceecCC--c
Q 011979 353 EDYPLLLGSADLGVCLHTSSSGLDLPM--KVVDMFGC---G------LPVCAVSY----S---CI----EELVKVDK--N 408 (473)
Q Consensus 353 ~~i~~~l~~adi~v~~~~~s~~e~~p~--kv~Eama~---G------~PvI~~~~----~---~~----~e~i~~~~--~ 408 (473)
+....+...||.+|.. .-| +|+ -++|++.. | +|||..+. + ++ ...+.++. .
T Consensus 239 ~RK~~mv~~SDAfIaL---PGG--~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~eg~~~~ 313 (462)
T 3gh1_A 239 KRLEAFVRMAHGIIIF---PGG--PGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKH 313 (462)
T ss_dssp HHHHHHHHHCSEEEEC---SCS--HHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCGGGGGG
T ss_pred HHHHHHHHHCCEEEEc---CCC--cchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhhhhhhc
Confidence 3456677889999983 222 333 67788763 4 89999875 2 11 12222222 1
Q ss_pred e-EEeCCHHHHHHHHHHHHh
Q 011979 409 G-LLFSSSSELADQLLMLFK 427 (473)
Q Consensus 409 G-~~~~~~~~la~~i~~l~~ 427 (473)
- .+++|++++.+.|.....
T Consensus 314 ~~iv~DdpeEvl~~i~~~~~ 333 (462)
T 3gh1_A 314 YSIAIDNPAEAARIMSNAMP 333 (462)
T ss_dssp CEEEESCHHHHHHHHHHHHH
T ss_pred cEEEcCCHHHHHHHHHHHHH
Confidence 2 245789999999988765
No 154
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.87 E-value=1.4e+02 Score=24.49 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=31.8
Q ss_pred CeEEEEEecCCCCChhHHHHH-HHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEEee
Q 011979 5 GRACVVVLGDLGRSPRMQYQA-LSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~~a-~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~~~ 62 (473)
++++|++.+..|...++.... ..+.+ .|++|.++........ ++......-+...|
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~~-~l~~~~d~ii~g~p 58 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADASAE-NLADGYDAVLFGCS 58 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTBCCT-TTTTTCSEEEEEEC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhCCHh-HhcccCCEEEEEec
Confidence 467888888776666555543 33444 4999999876543221 22203344455555
No 155
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=21.74 E-value=1.4e+02 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCcEEEecC-CCCcccHHHHHhcCcEEEEeccCCCCC-----------CCcHHHHHHHhcCCcEEEecc
Q 011979 329 ESYEEKIRRLRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGL-----------DLPMKVVDMFGCGLPVCAVSY 396 (473)
Q Consensus 329 ~~l~~~~~~~~l~~V~~~g~-~v~~~~i~~~l~~adi~v~~~~~s~~e-----------~~p~kv~Eama~G~PvI~~~~ 396 (473)
..+.+..+++|. .+..+.- --+.++..+.+.+||..++| . |+ ++--.+-|+...|+|++++..
T Consensus 47 ~s~~~a~~~lG~-~v~~~~i~~~~~~~~~~~l~~ad~I~l~---G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 47 EAGKKALESLGL-LVEELDIATESLGEITTKLRKNDFIYVT---G-GNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp HHHHHHHHHTTC-EEEECCTTTSCHHHHHHHHHHSSEEEEC---C-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHHHHcCC-eEEEEEecCCChHHHHHHHHhCCEEEEC---C-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 567777888887 3444420 01356777899999999994 3 32 233467888889999999864
Q ss_pred C
Q 011979 397 S 397 (473)
Q Consensus 397 ~ 397 (473)
|
T Consensus 122 G 122 (206)
T 3l4e_A 122 G 122 (206)
T ss_dssp H
T ss_pred H
Confidence 3
No 156
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=21.65 E-value=62 Score=30.85 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred CEEEEEEcCC-CChH---HHHHHHHHcCC-C--cEEEecCCCCcccH---------H------HHHhcCcEEEEeccCCC
Q 011979 316 RLLFIITGKG-PDKE---SYEEKIRRLRL-K--RVAFRTMWLSAEDY---------P------LLLGSADLGVCLHTSSS 373 (473)
Q Consensus 316 ~~~l~ivG~g-~~~~---~l~~~~~~~~l-~--~V~~~g~~v~~~~i---------~------~~l~~adi~v~~~~~s~ 373 (473)
..++.|+|+- ...+ .+.+.++..|. - .|.+. |++.+++ . ..+...|.+|+|- +.
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~G--G~ 100 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLM--YIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPG--GF 100 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEE--EEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECS--CC
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEE--EechhhcccccccCChhhhhhHHHHHhhCCEEEecC--CC
Confidence 4788999665 3222 44555555544 1 23333 3433332 1 1478899999953 22
Q ss_pred CCC----CcHHHHHHHhcCCcEEEec
Q 011979 374 GLD----LPMKVVDMFGCGLPVCAVS 395 (473)
Q Consensus 374 ~e~----~p~kv~Eama~G~PvI~~~ 395 (473)
+.. ..-.+-+++..|+||++.-
T Consensus 101 ~~~~~~~~~~~i~~~~~~~~PilGIC 126 (289)
T 2v4u_A 101 GIRGTLGKLQAISWARTKKIPFLGVX 126 (289)
T ss_dssp SSTTHHHHHHHHHHHHHTTCCEEEET
T ss_pred CchhHHHHHHHHHHHHHcCCcEEEEC
Confidence 221 1223455667899999874
No 157
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.62 E-value=1.5e+02 Score=26.92 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCC---CcEEEEec-CCCCCCcccccCCCEEEEEeecCCCCCCCCcchhH
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMS---LEVDVVAY-GGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLK 76 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g---~eV~vi~~-~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 76 (473)
|.+++|+.|++.|. +.-....+...+. | ++|..+.. .......+.....||.++.++ ....+.
T Consensus 5 ~~~~~ri~vl~SG~----gsnl~all~~~~~-~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~-----~~~~~~--- 71 (215)
T 3kcq_A 5 MKKELRVGVLISGR----GSNLEALAKAFST-EESSVVISCVISNNAEARGLLIAQSYGIPTFVVK-----RKPLDI--- 71 (215)
T ss_dssp --CCEEEEEEESSC----CHHHHHHHHHTCC-C-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECC-----BTTBCH---
T ss_pred CCCCCEEEEEEECC----cHHHHHHHHHHHc-CCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeC-----cccCCh---
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCCCCEEEE
Q 011979 77 PVLLLLKPLIQFFMLLWFLCVKIASPDVFLV 107 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~ 107 (473)
..+...+.. .++|++++
T Consensus 72 --~~~~~~L~~------------~~~Dlivl 88 (215)
T 3kcq_A 72 --EHISTVLRE------------HDVDLVCL 88 (215)
T ss_dssp --HHHHHHHHH------------TTCSEEEE
T ss_pred --HHHHHHHHH------------hCCCEEEE
No 158
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=21.52 E-value=1.4e+02 Score=23.30 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=45.7
Q ss_pred CCEEEEEEcCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEEeccCCCCCCCcHHHHHHHhcCCcEEE
Q 011979 315 PRLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 393 (473)
Q Consensus 315 ~~~~l~ivG~g~-~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI~ 393 (473)
.+..++|.|.-+ .+++++++++.+|. .+.+. ++ +..|++|+ . +..+.|+-.|...|+|||.
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg---~v~~s-Vs--------kkt~~LV~---g---~~~gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLGA---KVTDS-VS--------RKTSYLVV---G---ENPGSKLEKARALGVPTLT 70 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTTC---EEESC-CS--------SSCCCBEE---C---SSSSTTHHHHHCSSSCCEE
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcCC---EEeCc-cc--------CCeeEEEe---C---CCCChHHHHHHHcCCcEEe
Confidence 567899999643 68899999999983 23343 32 46777887 2 2245799999999999987
Q ss_pred ec
Q 011979 394 VS 395 (473)
Q Consensus 394 ~~ 395 (473)
-+
T Consensus 71 E~ 72 (92)
T 1l7b_A 71 EE 72 (92)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 159
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=21.48 E-value=69 Score=30.49 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=28.5
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCEEEEE
Q 011979 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHT 60 (473)
Q Consensus 5 ~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~~~~~~~~~~~~~~i~i~~ 60 (473)
+++.|+..|.+|. ..+..|++. |++|++++... . +.....|+.+..
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~-g~~V~~~~r~~---~-~~i~~~g~~~~~ 48 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQRS-GEDVHFLLRRD---Y-EAIAGNGLKVFS 48 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHHT-SCCEEEECSTT---H-HHHHHTCEEEEE
T ss_pred CEEEEECcCHHHH-----HHHHHHHHC-CCeEEEEEcCc---H-HHHHhCCCEEEc
Confidence 3477777776643 346778886 99999988642 2 233345666554
No 160
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=21.45 E-value=2.8e+02 Score=26.68 Aligned_cols=81 Identities=9% Similarity=0.008 Sum_probs=51.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC--------cccHHHHHhcCcEEEEe--ccCCCCCCCcHHHHHH
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS--------AEDYPLLLGSADLGVCL--HTSSSGLDLPMKVVDM 384 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~--------~~~i~~~l~~adi~v~~--~~~s~~e~~p~kv~Ea 384 (473)
.+-++-|+|-|.--..+-+.++.+|. +|.......+ ..++.+++..||++++- .++....-+.-..++.
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~ 223 (331)
T 1xdw_A 145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223 (331)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhh
Confidence 34589999999766667777777775 4555544221 23678899999999982 2222223345567888
Q ss_pred HhcCCcEEEecc
Q 011979 385 FGCGLPVCAVSY 396 (473)
Q Consensus 385 ma~G~PvI~~~~ 396 (473)
|.-|.-+|-+..
T Consensus 224 mk~ga~lin~sr 235 (331)
T 1xdw_A 224 MKDGAILVNCAR 235 (331)
T ss_dssp SCTTEEEEECSC
T ss_pred CCCCcEEEECCC
Confidence 877765655543
No 161
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=21.40 E-value=2.9e+02 Score=21.41 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=65.0
Q ss_pred CCEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh--cCC
Q 011979 315 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG--CGL 389 (473)
Q Consensus 315 ~~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama--~G~ 389 (473)
...+++|+.+.+. .+.+...+++.+..-+.... +.++....+.. .|+.++-.... +..-+..+++.+. ..+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~~a~~~~~~~~~dlii~d~~~~-~~~~g~~~~~~l~~~~~~ 83 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFD---NGEEAVRCAPDLRPDIALVDIMLC-GALDGVETAARLAAGCNL 83 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHHCCSEEEEESSCC-SSSCHHHHHHHHHHHSCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEEC---CHHHHHHHHHhCCCCEEEEecCCC-CCCCHHHHHHHHHhCCCC
Confidence 4568888886543 35567777776653221232 25666666554 68888722111 1123445555544 578
Q ss_pred cEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHh
Q 011979 390 PVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 427 (473)
Q Consensus 390 PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~ 427 (473)
|+|.... .. ..+....+..+++.. +.+++...|..++.
T Consensus 84 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 9887542 22 234455677788875 68899999988876
No 162
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=21.35 E-value=97 Score=29.28 Aligned_cols=40 Identities=28% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCCC-CChhHHHHHHHHHhhCCCcEEEEecCCC
Q 011979 3 RRGRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS 44 (473)
Q Consensus 3 ~~~~~~i~~~~~~g-~s~r~~~~a~~L~~~~g~eV~vi~~~~~ 44 (473)
+++++.|+...|=| .++++..++..|.+ +++|.|+++..+
T Consensus 8 ~~~~m~ILlTNDDGi~apGi~aL~~~l~~--~~~V~VVAP~~~ 48 (261)
T 3ty2_A 8 ATPKLRLLLSNDDGVYAKGLAILAKTLAD--LGEVDVVAPDRN 48 (261)
T ss_dssp ---CCEEEEECSSCTTCHHHHHHHHHHTT--TSEEEEEEESSC
T ss_pred cCCCCeEEEEcCCCCCCHHHHHHHHHHHh--cCCEEEEecCCC
Confidence 34444556665544 58888888777765 689999997743
No 163
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.08 E-value=2.9e+02 Score=21.36 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCCCCCCcHHHHHHHh----c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFG----C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~~e~~p~kv~Eama----~ 387 (473)
..+++|+.+.+. ...+.+..++.+.. |.... +.++....+.. .|+.++= ......-|..+++.+. .
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~-v~~~~---~~~~a~~~~~~~~~~dlvi~D--~~l~~~~g~~~~~~l~~~~~~ 80 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGID-AVGAD---GAEEARLYLHYQKRIGLMITD--LRMQPESGLDLIRTIRASERA 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCC-EEEES---SHHHHHHHHHHCTTEEEEEEC--SCCSSSCHHHHHHHHHTSTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCce-EEEeC---CHHHHHHHHHhCCCCcEEEEe--ccCCCCCHHHHHHHHHhcCCC
Confidence 467888887643 35677777777653 33332 24555555543 4677762 1222334667777664 3
Q ss_pred CCcEEEeccCc----cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYSC----IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~~----~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|...... ..+....+..+++.. +.++|...|.++...
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 81 ALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp TCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 47888764322 334555677888886 699999999998875
No 164
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.01 E-value=1.8e+02 Score=22.86 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=61.9
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCC--CCcHHHHHHHh---c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGL--DLPMKVVDMFG---C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e--~~p~kv~Eama---~ 387 (473)
..+++|+.+.+. ...+.+.+++.+. .|.... +.++....+.. .|++++- ..... .-|..+++.+. .
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~D--~~l~~~~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDV-TIQCFA---SAESFMRQQISDDAIGMIIE--AHLEDKKDSGIELLETLVKRGF 79 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSS-EEEEES---SHHHHTTSCCCTTEEEEEEE--TTGGGBTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCc-EEEEeC---CHHHHHHHHhccCCCEEEEe--CcCCCCCccHHHHHHHHHhCCC
Confidence 357888886543 3445555555553 333332 24444444443 4666662 12122 23455665554 3
Q ss_pred CCcEEEecc-Cc---cccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~-~~---~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|.... .. ..+.+..+..+++.. +.+++...|.++...
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 80 HLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 688887642 22 334556778889886 699999999988764
No 165
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=20.95 E-value=42 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011979 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (473)
Q Consensus 1 m~~~~~~~i~~~~~~g~s~r~~~~a~~L~~~~g~eV~vi~~~ 42 (473)
|.+.|...|+..|++...--....|...+. +|++|+|+..-
T Consensus 2 m~~~kl~II~~sG~~dka~~a~ilA~~AaA-~G~eV~iFfTf 42 (160)
T 3pnx_A 2 MENKKMNLLLFSGDYDKALASLIIANAARE-MEIEVTIFCAF 42 (160)
T ss_dssp CTTCEEEEEECCCCHHHHHHHHHHHHHHHH-TTCEEEEEECG
T ss_pred CCCCcEEEEEecCCHHHHHHHHHHHHHHHH-cCCCEEEEEee
Confidence 666676667777765222222223344444 59999998743
No 166
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.90 E-value=2.2e+02 Score=26.11 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHhh-CCCcEE-EEecCCCCCCcccccCCCEEEEEee
Q 011979 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVD-VVAYGGSKPHAAILEHPSIHIHTMT 62 (473)
Q Consensus 3 ~~~~~~i~~~~~~g~s~r~~~~a~~L~~~-~g~eV~-vi~~~~~~~~~~~~~~~~i~i~~~~ 62 (473)
+|+|+.++..|. ..-.+.....+.+. .+++|. |+|........+.....||.++.+.
T Consensus 21 ~~~rI~~l~SG~---g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~ 79 (229)
T 3auf_A 21 HMIRIGVLISGS---GTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMD 79 (229)
T ss_dssp TCEEEEEEESSC---CHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECC
T ss_pred CCcEEEEEEeCC---cHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEEC
Confidence 455666665554 12233333344432 145654 4443222222233457799988776
No 167
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.78 E-value=2.1e+02 Score=22.40 Aligned_cols=106 Identities=8% Similarity=0.041 Sum_probs=67.1
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHH-cCCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCC-C-CCCcHHHHHHHh--
Q 011979 316 RLLFIITGKGPD-KESYEEKIRR-LRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSS-G-LDLPMKVVDMFG-- 386 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~-~~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~-~-e~~p~kv~Eama-- 386 (473)
..+++|+.+.+. ...+++..++ .+. .|.... +.++....+.. .|++++ ... . ..-|..+++.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~-~v~~~~---~~~~a~~~l~~~~~~dlvi~---D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEY-DFIEVE---NLKKFYSIFKDLDSITLIIM---DIAFPVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCC-EEEEEC---SHHHHHTTTTTCCCCSEEEE---CSCSSSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCc-cEEEEC---CHHHHHHHHhcCCCCcEEEE---eCCCCCCCcHHHHHHHHHhC
Confidence 357888886643 3566777777 665 343332 35666666655 688887 221 1 223456666554
Q ss_pred ---cCCcEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 387 ---CGLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 387 ---~G~PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
..+|||..... ...+.+..+..+++.. +.++|.+.|..++..
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 47888886432 2334456677888886 689999999999875
No 168
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=20.59 E-value=5.3e+02 Score=24.20 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=44.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh--cCcEEEEeccCCCCCCCcHHHHHHHhcCCcEE
Q 011979 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 392 (473)
Q Consensus 315 ~~~~l~ivG~g~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~--~adi~v~~~~~s~~e~~p~kv~Eama~G~PvI 392 (473)
+++.++-+-+ .+.+..++.+++++.++ -..++.+++. ..|+++.. .....-.-.+.+++..|++|+
T Consensus 28 ~~~~l~av~d-~~~~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~D~V~i~---tp~~~h~~~~~~al~~gk~vl 95 (330)
T 3e9m_A 28 AQAEVRGIAS-RRLENAQKMAKELAIPV--------AYGSYEELCKDETIDIIYIP---TYNQGHYSAAKLALSQGKPVL 95 (330)
T ss_dssp SSEEEEEEBC-SSSHHHHHHHHHTTCCC--------CBSSHHHHHHCTTCSEEEEC---CCGGGHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEEe-CCHHHHHHHHHHcCCCc--------eeCCHHHHhcCCCCCEEEEc---CCCHHHHHHHHHHHHCCCeEE
Confidence 6777775543 44556777788877421 2477888888 78988883 221112235678999999999
Q ss_pred Ee
Q 011979 393 AV 394 (473)
Q Consensus 393 ~~ 394 (473)
+-
T Consensus 96 ~E 97 (330)
T 3e9m_A 96 LE 97 (330)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 169
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=20.59 E-value=5.3e+02 Score=24.68 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHhhcCCEEEEc--CHHHHHHHHHHhCCceEEeeCCCC-CCcccC-ChhHHHHHHHhhhhhccCCCCcccccCCCcCCC
Q 011979 161 KYYGKMANGCLCV--TQAMQHELAQNWGIKATVLYDQPP-EFFHPT-SLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQ 236 (473)
Q Consensus 161 ~~~~~~ad~vi~v--S~~~~~~l~~~~g~~~~vi~n~~~-~~f~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (473)
+.+.+++|.++.= .....+.+.+.-++++ .|+.+ ..+||+ ..-+-.-++++.|..
T Consensus 95 rvls~~~D~iviR~~~~~~~~~la~~~~vPV---INag~g~~~HPtQ~LaDl~Ti~e~~g~l------------------ 153 (308)
T 1ml4_A 95 KTVEQYCDVIVIRHPKEGAARLAAEVAEVPV---INAGDGSNQHPTQTLLDLYTIKKEFGRI------------------ 153 (308)
T ss_dssp HHHTTTCSEEEEEESSTTHHHHHHHTCSSCE---EEEEETTSCCHHHHHHHHHHHHHHSSCS------------------
T ss_pred HHHHHhCcEEEEecCChhHHHHHHHhCCCCE---EeCccCCccCcHHHHHHHHHHHHHhCCC------------------
Q ss_pred CccchhhhcccccccccCCCCCeEEEEEeeccCCCCHHHHHHHHHHhHHHHHhhhccCCCchhhHHHhhhccCccccCCC
Q 011979 237 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 316 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
+-..+.|+|-+....=..-++.++..+ +
T Consensus 154 --------------------~gl~va~vGD~~~~rva~Sl~~~~~~~--------------------------------G 181 (308)
T 1ml4_A 154 --------------------DGLKIGLLGDLKYGRTVHSLAEALTFY--------------------------------D 181 (308)
T ss_dssp --------------------SSEEEEEESCTTTCHHHHHHHHHGGGS--------------------------------C
T ss_pred --------------------CCeEEEEeCCCCcCchHHHHHHHHHHC--------------------------------C
Q ss_pred EEEEEEcCC--CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcCcEEEE
Q 011979 317 LLFIITGKG--PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 367 (473)
Q Consensus 317 ~~l~ivG~g--~~~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~adi~v~ 367 (473)
+.+.++|.. ...+++.+.+++.|.+ +.+. +++.+.+..||+...
T Consensus 182 ~~v~~~~P~~~~~~~~~~~~~~~~g~~-~~~~------~d~~eav~~aDvvyt 227 (308)
T 1ml4_A 182 VELYLISPELLRMPRHIVEELREKGMK-VVET------TTLEDVIGKLDVLYV 227 (308)
T ss_dssp EEEEEECCGGGCCCHHHHHHHHHTTCC-EEEE------SCTHHHHTTCSEEEE
T ss_pred CEEEEECCccccCCHHHHHHHHHcCCe-EEEE------cCHHHHhcCCCEEEE
No 170
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=20.45 E-value=3.5e+02 Score=22.06 Aligned_cols=66 Identities=11% Similarity=-0.070 Sum_probs=39.7
Q ss_pred CCCCEEEEeCCCchhHHHHHHHHHhh-CCCeEEEEecCchhhhhhhhcCCCchHHHHHHHHHHHHhhcCCEEEEcCHHHH
Q 011979 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (473)
Q Consensus 100 ~~~Dvi~~~~p~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (473)
.+.|+|++..+..-....+...++.+ ...+++...++..+. +.....-+|.++.......
T Consensus 70 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~-------------------~~l~~~G~~~vi~p~~~~~ 130 (153)
T 1id1_A 70 DRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNL-------------------NKIKMVHPDIILSPQLFGS 130 (153)
T ss_dssp TTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGH-------------------HHHHTTCCSEEECHHHHHH
T ss_pred hhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHH-------------------HHHHHcCCCEEEcHHHHHH
Confidence 67999988765544455455556665 456777767666210 1111124778887777777
Q ss_pred HHHHHH
Q 011979 179 HELAQN 184 (473)
Q Consensus 179 ~~l~~~ 184 (473)
..+.+.
T Consensus 131 ~~l~~~ 136 (153)
T 1id1_A 131 EILARV 136 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 171
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=20.44 E-value=4e+02 Score=26.26 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred CEEEEEEc-C-CCChHHHHHHHHHcCCCcEEEecCC-CCcccHHHHHhcCcEEEEeccCCCCC---CCc----H---HHH
Q 011979 316 RLLFIITG-K-GPDKESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLGSADLGVCLHTSSSGL---DLP----M---KVV 382 (473)
Q Consensus 316 ~~~l~ivG-~-g~~~~~l~~~~~~~~l~~V~~~g~~-v~~~~i~~~l~~adi~v~~~~~s~~e---~~p----~---kv~ 382 (473)
++++.+=. . |...+.+.+.+..++.++|-- |.- +...++.+.+....+.+-. .|++.. .+| . .+-
T Consensus 210 Gl~~t~HAGE~~~p~~~i~~al~~lga~RIgH-G~~~~~d~~L~~~l~~~~I~lEv-CP~SN~~l~~v~~~~~~~~HP~~ 287 (380)
T 4gxw_A 210 GFRTTAHAGEFGMPWRNVETAVDLLHVDRVDH-GYTIVDNPELCARYAERGIVFTV-VPTNSYYLRTLPPDQWAERHPMR 287 (380)
T ss_dssp TCEEEEEESCTTCCHHHHHHHHHTSCCSEEEE-CGGGGGCHHHHHHHHHHTCEEEE-CTTCHHHHHHSCTTTHHHHCGGG
T ss_pred CCCeeeeccccCCchHHHHHHHHHcCCccccc-ceeeccChHHHHHHHHhCceeEE-CCcchhhhcccccccccccChHH
Confidence 56666644 2 222456777777788777663 331 2345677777777776541 133221 011 0 255
Q ss_pred HHHhcCCcEEEec-cCccccceecCCceEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011979 383 DMFGCGLPVCAVS-YSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 447 (473)
Q Consensus 383 Eama~G~PvI~~~-~~~~~e~i~~~~~G~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 447 (473)
..+..|+||..+. .+++. -.+ +.+....+.+.+--+.++..++..|+.+++
T Consensus 288 ~l~~~Gv~vtinTDDp~~f-----------~t~---Ls~Ey~~~~~~~gls~~dl~~l~~nsi~~s 339 (380)
T 4gxw_A 288 KMPGLGLKIHPNTDDPTLH-----------KVN---PSEAWELMFSHFGFTIADLKQFMLNGIDGA 339 (380)
T ss_dssp GTGGGTCEEEECCBSHHHH-----------TCC---HHHHHHHHHHTSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHCCCeEEECCCCchhh-----------CCC---HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 6788899987653 22211 112 222222333333335677778888887755
No 172
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.19 E-value=3.1e+02 Score=21.26 Aligned_cols=107 Identities=15% Similarity=0.030 Sum_probs=66.0
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--CcEEEEeccCCCCCCCcHHHHHHHh---cCC
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGL 389 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~--adi~v~~~~~s~~e~~p~kv~Eama---~G~ 389 (473)
..+++|+.+.+. .+.+++..++.+ -.|..... .++....+.. .|++++-. .....-|..+++.+. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~-~~v~~~~~---~~~a~~~l~~~~~dlvi~d~--~l~~~~g~~~~~~l~~~~~~~ 80 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHF-PEVWSAGD---GEEGERLFGLHAPDVIITDI--RMPKLGGLEMLDRIKAGGAKP 80 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTC-SCEEEESS---HHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHHTTCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcC-cEEEEECC---HHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCC
Confidence 467888886643 345666666643 24544433 5666666554 68888721 122234556666554 367
Q ss_pred cEEEeccC----ccccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 390 PVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 390 PvI~~~~~----~~~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
|+|..... ...+....+..+++.. +.++|.+.|.++.+.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 81 YVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp EEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 88876432 2334566777888885 699999999998773
No 173
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.14 E-value=3e+02 Score=21.06 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=61.2
Q ss_pred CEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---CcEEEEeccCCCCC-CCcHHHHHHHh---c
Q 011979 316 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGL-DLPMKVVDMFG---C 387 (473)
Q Consensus 316 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~V~~~g~~v~~~~i~~~l~~---adi~v~~~~~s~~e-~~p~kv~Eama---~ 387 (473)
..+++|+.+.+. .+.+...++..+. .|.... +.++....+.. .|++++=. .... .-+..+++.+. .
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~~dlvi~d~--~l~~~~~g~~~~~~l~~~~~ 78 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGF-LVTAVS---SGAKAIEMLKSGAAIDGVVTDI--RFCQPPDGWQVARVAREIDP 78 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHTTCCCCEEEEES--CCSSSSCHHHHHHHHHHHCT
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCC-EEEEEC---CHHHHHHHHHcCCCCCEEEEee--eCCCCCCHHHHHHHHHhcCC
Confidence 467888886543 3556666776664 343332 35666666654 58888721 1111 23455565553 4
Q ss_pred CCcEEEeccCc-c---ccceecCCceEEeC--CHHHHHHHHHHHHhC
Q 011979 388 GLPVCAVSYSC-I---EELVKVDKNGLLFS--SSSELADQLLMLFKG 428 (473)
Q Consensus 388 G~PvI~~~~~~-~---~e~i~~~~~G~~~~--~~~~la~~i~~l~~~ 428 (473)
.+|+|...... . ...+.. .|++.. +.+++...|.+++..
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhc
Confidence 68888764222 1 122222 257765 689999999998875
No 174
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=20.04 E-value=83 Score=25.61 Aligned_cols=70 Identities=11% Similarity=-0.036 Sum_probs=43.9
Q ss_pred HHHhcCcEEEEeccCCC--CCCCcHHHHHHHhcCCcEEEeccCcc---ccceecCCceEEeC-CHHHHHHHHHHHHh
Q 011979 357 LLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCI---EELVKVDKNGLLFS-SSSELADQLLMLFK 427 (473)
Q Consensus 357 ~~l~~adi~v~~~~~s~--~e~~p~kv~Eama~G~PvI~~~~~~~---~e~i~~~~~G~~~~-~~~~la~~i~~l~~ 427 (473)
.-++.+|++|++..... .+..---+-.|...|+|+|+...-+. +..+.+.. --++. |.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~a-~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAVS-SEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHHC-SEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhhC-ceeccCCHHHHHHHHHhccC
Confidence 55778999998643332 12233356678889999999964333 33343222 23444 78899999987754
Done!