Query 011980
Match_columns 473
No_of_seqs 496 out of 3336
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0113 U1 small nuclear ribon 100.0 3.2E-36 6.8E-41 280.1 25.3 190 40-229 3-200 (335)
2 PLN03134 glycine-rich RNA-bind 99.8 2.6E-18 5.5E-23 151.4 14.5 85 128-212 32-116 (144)
3 KOG0415 Predicted peptidyl pro 99.8 3.9E-18 8.6E-23 162.5 13.8 121 97-218 207-327 (479)
4 KOG0107 Alternative splicing f 99.8 2.7E-17 5.8E-22 143.1 15.0 79 129-212 9-87 (195)
5 TIGR01659 sex-lethal sex-letha 99.7 1.3E-17 2.8E-22 167.3 12.0 141 71-211 122-276 (346)
6 KOG4207 Predicted splicing fac 99.7 1E-15 2.2E-20 136.4 14.7 82 129-210 12-93 (256)
7 TIGR01645 half-pint poly-U bin 99.7 2.9E-16 6.2E-21 165.8 10.0 146 71-216 122-290 (612)
8 KOG0121 Nuclear cap-binding pr 99.7 3.6E-16 7.8E-21 129.1 8.2 81 129-209 35-115 (153)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4E-15 8.7E-20 151.0 11.6 83 129-211 268-350 (352)
10 TIGR01659 sex-lethal sex-letha 99.6 5.4E-15 1.2E-19 148.4 10.3 83 127-209 104-186 (346)
11 PF00076 RRM_1: RNA recognitio 99.6 7.1E-15 1.5E-19 112.7 8.5 70 133-203 1-70 (70)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 8.2E-15 1.8E-19 148.8 10.8 82 129-210 2-83 (352)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.4E-14 3E-19 154.5 12.0 81 129-209 294-374 (509)
14 TIGR01622 SF-CC1 splicing fact 99.6 1.2E-14 2.6E-19 152.9 10.3 79 130-208 186-264 (457)
15 KOG0122 Translation initiation 99.5 1.8E-14 3.8E-19 131.9 9.6 83 128-210 187-269 (270)
16 KOG0148 Apoptosis-promoting RN 99.5 4.4E-14 9.5E-19 130.9 11.9 135 70-210 76-238 (321)
17 KOG0146 RNA-binding protein ET 99.5 3.3E-15 7.2E-20 137.8 4.0 88 124-211 279-366 (371)
18 KOG0105 Alternative splicing f 99.5 4E-14 8.7E-19 124.1 10.0 80 129-211 5-84 (241)
19 KOG0126 Predicted RNA-binding 99.5 1.4E-15 3E-20 133.0 0.2 84 129-212 34-117 (219)
20 KOG0149 Predicted RNA-binding 99.5 2.7E-14 5.8E-19 130.3 6.9 80 129-209 11-90 (247)
21 TIGR01628 PABP-1234 polyadenyl 99.5 3.3E-14 7.2E-19 153.3 8.3 137 72-209 194-363 (562)
22 KOG0130 RNA-binding protein RB 99.5 5.5E-14 1.2E-18 117.2 7.5 82 129-210 71-152 (170)
23 KOG0148 Apoptosis-promoting RN 99.5 9.9E-14 2.1E-18 128.6 8.8 83 129-211 61-143 (321)
24 TIGR01645 half-pint poly-U bin 99.5 1.2E-13 2.6E-18 146.1 10.6 79 129-207 106-184 (612)
25 PLN03120 nucleic acid binding 99.5 1.7E-13 3.8E-18 129.2 10.5 76 130-209 4-79 (260)
26 PF14259 RRM_6: RNA recognitio 99.5 1.5E-13 3.3E-18 105.7 8.3 70 133-203 1-70 (70)
27 PLN03213 repressor of silencin 99.4 2.8E-13 6E-18 134.6 9.4 79 127-209 7-87 (759)
28 KOG0131 Splicing factor 3b, su 99.4 2.1E-13 4.5E-18 119.7 6.2 82 127-208 6-87 (203)
29 KOG0111 Cyclophilin-type pepti 99.4 2.4E-13 5.3E-18 122.3 5.9 84 129-212 9-92 (298)
30 smart00362 RRM_2 RNA recogniti 99.4 1.3E-12 2.9E-17 99.4 9.2 72 132-205 1-72 (72)
31 KOG0147 Transcriptional coacti 99.4 1.5E-13 3.2E-18 138.9 4.3 83 127-209 275-357 (549)
32 KOG0125 Ataxin 2-binding prote 99.4 9.1E-13 2E-17 125.3 8.7 82 127-210 93-174 (376)
33 KOG0144 RNA-binding protein CU 99.4 3.2E-13 7E-18 132.4 5.6 139 71-210 49-206 (510)
34 PLN03121 nucleic acid binding 99.4 1.8E-12 4E-17 120.4 10.0 76 129-208 4-79 (243)
35 TIGR01628 PABP-1234 polyadenyl 99.4 1.5E-12 3.3E-17 140.5 10.3 78 132-209 2-79 (562)
36 TIGR01648 hnRNP-R-Q heterogene 99.4 1.6E-12 3.4E-17 137.4 10.1 80 128-208 56-136 (578)
37 TIGR01648 hnRNP-R-Q heterogene 99.4 3E-12 6.5E-17 135.4 12.0 76 129-212 232-309 (578)
38 KOG0127 Nucleolar protein fibr 99.4 2E-12 4.3E-17 130.2 9.7 81 129-210 116-196 (678)
39 TIGR01622 SF-CC1 splicing fact 99.4 2.1E-12 4.6E-17 135.8 10.5 80 129-209 88-167 (457)
40 smart00360 RRM RNA recognition 99.4 3.4E-12 7.3E-17 96.7 8.2 71 135-205 1-71 (71)
41 KOG0117 Heterogeneous nuclear 99.3 3.3E-12 7.1E-17 126.0 10.0 83 127-209 80-163 (506)
42 KOG0114 Predicted RNA-binding 99.3 5E-12 1.1E-16 100.9 9.1 82 124-208 12-93 (124)
43 KOG0108 mRNA cleavage and poly 99.3 2.5E-12 5.4E-17 131.0 8.3 81 131-211 19-99 (435)
44 COG0724 RNA-binding proteins ( 99.3 5.1E-12 1.1E-16 122.1 9.9 80 130-209 115-194 (306)
45 KOG0109 RNA-binding protein LA 99.3 1.8E-12 3.8E-17 121.5 5.8 130 70-212 16-152 (346)
46 KOG0145 RNA-binding protein EL 99.3 8.5E-12 1.8E-16 115.1 9.7 82 129-210 277-358 (360)
47 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.3E-16 94.0 9.5 74 132-206 1-74 (74)
48 KOG0145 RNA-binding protein EL 99.3 7.4E-12 1.6E-16 115.4 8.5 83 128-210 39-121 (360)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.1E-11 4.5E-16 128.9 10.4 79 128-211 273-352 (481)
50 KOG0124 Polypyrimidine tract-b 99.2 4.5E-12 9.8E-17 121.8 4.6 77 130-206 113-189 (544)
51 KOG4676 Splicing factor, argin 99.2 2.1E-13 4.6E-18 132.0 -5.0 64 130-198 151-214 (479)
52 KOG0127 Nucleolar protein fibr 99.2 3E-11 6.6E-16 121.8 9.0 81 130-210 292-378 (678)
53 KOG0131 Splicing factor 3b, su 99.2 8.3E-12 1.8E-16 109.7 4.0 84 127-210 93-177 (203)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 6.2E-11 1.3E-15 125.3 10.8 76 129-210 1-78 (481)
55 smart00361 RRM_1 RNA recogniti 99.2 6.5E-11 1.4E-15 91.1 7.9 62 144-205 2-70 (70)
56 KOG0109 RNA-binding protein LA 99.2 2.6E-11 5.6E-16 113.7 6.6 73 131-211 3-75 (346)
57 PF13893 RRM_5: RNA recognitio 99.2 9E-11 1.9E-15 86.1 7.7 56 147-207 1-56 (56)
58 KOG0117 Heterogeneous nuclear 99.2 5.1E-11 1.1E-15 117.7 8.1 73 129-209 258-330 (506)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.2 4.6E-11 1E-15 127.4 8.1 81 128-208 407-500 (509)
60 KOG0144 RNA-binding protein CU 99.2 8.2E-11 1.8E-15 115.7 9.0 88 124-211 418-505 (510)
61 KOG0124 Polypyrimidine tract-b 99.1 1.1E-10 2.5E-15 112.3 7.8 79 130-208 210-288 (544)
62 KOG4205 RNA-binding protein mu 99.1 7.1E-11 1.5E-15 115.6 4.2 142 69-211 19-177 (311)
63 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.8E-09 3.9E-14 109.4 12.2 84 128-211 403-486 (940)
64 KOG4212 RNA-binding protein hn 99.0 6.2E-10 1.3E-14 109.6 8.6 79 130-209 44-123 (608)
65 KOG4208 Nucleolar RNA-binding 99.0 6E-10 1.3E-14 100.2 7.2 81 129-209 48-129 (214)
66 KOG0116 RasGAP SH3 binding pro 99.0 2.3E-09 5E-14 108.9 12.0 84 129-213 287-370 (419)
67 KOG0132 RNA polymerase II C-te 99.0 2.6E-09 5.6E-14 112.1 12.2 78 129-212 420-497 (894)
68 KOG4206 Spliceosomal protein s 99.0 1.1E-09 2.4E-14 100.1 7.9 80 129-211 8-91 (221)
69 KOG0123 Polyadenylate-binding 99.0 1.1E-09 2.4E-14 110.8 8.1 75 132-209 78-152 (369)
70 KOG4676 Splicing factor, argin 98.9 1E-09 2.2E-14 106.8 6.4 75 130-205 7-84 (479)
71 KOG0153 Predicted RNA-binding 98.8 1.6E-08 3.5E-13 97.4 10.0 75 129-209 227-302 (377)
72 KOG0110 RNA-binding protein (R 98.8 2.7E-09 5.8E-14 111.3 3.7 114 96-209 559-692 (725)
73 KOG4454 RNA binding protein (R 98.8 2.3E-09 5.1E-14 96.9 2.6 80 128-209 7-86 (267)
74 KOG4205 RNA-binding protein mu 98.8 4.4E-09 9.4E-14 103.1 4.6 82 129-211 5-86 (311)
75 KOG4209 Splicing factor RNPS1, 98.8 1.2E-08 2.6E-13 96.5 7.0 82 128-210 99-180 (231)
76 KOG4212 RNA-binding protein hn 98.8 1.2E-08 2.7E-13 100.6 6.6 74 129-207 535-608 (608)
77 KOG0110 RNA-binding protein (R 98.8 1.6E-08 3.5E-13 105.6 7.6 77 132-208 517-596 (725)
78 KOG0146 RNA-binding protein ET 98.7 1.7E-08 3.6E-13 93.9 6.4 81 128-209 17-100 (371)
79 KOG1548 Transcription elongati 98.7 2.9E-08 6.2E-13 95.7 8.2 82 128-210 132-221 (382)
80 KOG0123 Polyadenylate-binding 98.7 1.9E-08 4.1E-13 101.9 7.4 74 131-210 2-75 (369)
81 KOG0226 RNA-binding proteins [ 98.7 2.5E-08 5.5E-13 92.3 7.3 78 129-206 189-266 (290)
82 KOG0106 Alternative splicing f 98.7 1.6E-08 3.4E-13 93.5 5.7 71 131-209 2-72 (216)
83 KOG0533 RRM motif-containing p 98.7 7.4E-08 1.6E-12 91.0 9.2 80 129-209 82-161 (243)
84 KOG0120 Splicing factor U2AF, 98.7 1.8E-08 3.9E-13 103.7 5.1 93 117-209 276-368 (500)
85 KOG4660 Protein Mei2, essentia 98.6 1E-07 2.2E-12 97.3 7.8 75 124-203 69-143 (549)
86 KOG1457 RNA binding protein (c 98.6 4.6E-07 9.9E-12 82.5 10.6 85 127-211 31-119 (284)
87 KOG0151 Predicted splicing reg 98.5 1.5E-07 3.3E-12 98.1 7.4 82 128-209 172-256 (877)
88 PF04059 RRM_2: RNA recognitio 98.5 6.4E-07 1.4E-11 72.7 8.5 78 131-208 2-85 (97)
89 PF12220 U1snRNP70_N: U1 small 98.5 8E-07 1.7E-11 72.2 8.7 84 39-122 2-93 (94)
90 KOG2416 Acinus (induces apopto 98.4 3.8E-07 8.1E-12 93.5 6.0 77 127-209 441-521 (718)
91 KOG1995 Conserved Zn-finger pr 98.4 5.6E-07 1.2E-11 87.7 6.5 83 129-211 65-155 (351)
92 KOG4849 mRNA cleavage factor I 98.1 2E-06 4.3E-11 83.0 4.0 77 129-205 79-157 (498)
93 KOG1190 Polypyrimidine tract-b 98.1 1.8E-05 3.9E-10 78.2 9.3 77 130-211 297-374 (492)
94 KOG0147 Transcriptional coacti 98.1 2E-06 4.3E-11 88.0 2.6 80 129-209 178-257 (549)
95 KOG4210 Nuclear localization s 98.0 4.3E-06 9.4E-11 81.8 4.7 83 128-211 182-265 (285)
96 PF11608 Limkain-b1: Limkain b 98.0 1.8E-05 4E-10 61.4 6.4 68 131-208 3-75 (90)
97 KOG4211 Splicing factor hnRNP- 98.0 2.2E-05 4.7E-10 79.5 8.5 77 129-209 9-85 (510)
98 KOG1457 RNA binding protein (c 98.0 7.9E-06 1.7E-10 74.6 4.2 65 129-197 209-273 (284)
99 KOG1548 Transcription elongati 97.9 7.6E-05 1.7E-09 72.5 10.7 96 110-209 245-351 (382)
100 KOG0106 Alternative splicing f 97.9 1.6E-05 3.5E-10 73.7 5.3 68 129-204 98-165 (216)
101 KOG4206 Spliceosomal protein s 97.8 5.5E-05 1.2E-09 69.7 7.7 77 127-208 143-220 (221)
102 PF08777 RRM_3: RNA binding mo 97.8 2.3E-05 5E-10 65.0 4.5 70 131-206 2-76 (105)
103 COG5175 MOT2 Transcriptional r 97.8 0.00012 2.6E-09 70.7 9.5 85 125-209 109-202 (480)
104 KOG4211 Splicing factor hnRNP- 97.8 5.1E-05 1.1E-09 76.9 7.0 77 129-207 102-179 (510)
105 KOG2314 Translation initiation 97.7 8.8E-05 1.9E-09 76.1 8.1 77 128-205 56-139 (698)
106 KOG1855 Predicted RNA-binding 97.6 5.4E-05 1.2E-09 75.4 3.9 70 127-196 228-310 (484)
107 KOG0129 Predicted RNA-binding 97.5 0.00026 5.6E-09 72.4 8.1 69 123-191 363-432 (520)
108 KOG1456 Heterogeneous nuclear 97.5 0.00035 7.6E-09 68.5 8.1 81 127-212 284-365 (494)
109 KOG2202 U2 snRNP splicing fact 97.5 4.9E-05 1.1E-09 71.2 1.9 63 145-208 83-146 (260)
110 KOG0112 Large RNA-binding prot 97.5 0.00012 2.5E-09 79.1 4.9 78 126-209 451-530 (975)
111 KOG0105 Alternative splicing f 97.3 0.0025 5.4E-08 56.9 10.3 62 130-198 115-176 (241)
112 KOG1190 Polypyrimidine tract-b 97.3 0.0005 1.1E-08 68.3 6.3 77 128-209 412-490 (492)
113 KOG1456 Heterogeneous nuclear 97.3 0.00098 2.1E-08 65.4 7.9 77 129-210 119-199 (494)
114 KOG3152 TBP-binding protein, a 97.2 0.00026 5.6E-09 66.3 3.8 73 129-201 73-157 (278)
115 PF08952 DUF1866: Domain of un 97.2 0.0017 3.7E-08 56.4 8.6 74 127-209 24-106 (146)
116 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00068 1.5E-08 48.8 5.0 52 131-189 2-53 (53)
117 KOG0120 Splicing factor U2AF, 97.2 0.0011 2.3E-08 69.0 7.5 62 146-207 425-489 (500)
118 KOG0129 Predicted RNA-binding 97.2 0.001 2.2E-08 68.1 7.2 63 129-192 258-326 (520)
119 KOG2253 U1 snRNP complex, subu 97.1 0.00056 1.2E-08 71.9 4.5 70 129-207 39-108 (668)
120 KOG4307 RNA binding protein RB 97.0 0.0019 4.2E-08 68.1 8.0 78 129-206 865-943 (944)
121 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0027 5.9E-08 52.0 7.2 77 130-208 6-90 (100)
122 KOG1996 mRNA splicing factor [ 96.9 0.0025 5.4E-08 60.7 6.6 63 145-207 301-364 (378)
123 KOG1365 RNA-binding protein Fu 96.7 0.0051 1.1E-07 60.7 7.8 78 130-208 280-360 (508)
124 KOG0128 RNA-binding protein SA 96.5 0.0021 4.5E-08 69.5 3.4 79 130-209 736-814 (881)
125 KOG2193 IGF-II mRNA-binding pr 96.4 0.0023 5E-08 63.8 3.4 72 131-209 2-75 (584)
126 KOG0112 Large RNA-binding prot 96.4 0.001 2.3E-08 72.0 0.8 79 129-208 371-449 (975)
127 KOG0128 RNA-binding protein SA 96.3 0.00034 7.4E-09 75.3 -3.5 69 130-198 667-735 (881)
128 PF08675 RNA_bind: RNA binding 96.3 0.015 3.2E-07 45.4 6.3 55 130-193 9-63 (87)
129 KOG2135 Proteins containing th 96.3 0.0046 9.9E-08 62.7 4.4 72 131-209 373-445 (526)
130 PF10309 DUF2414: Protein of u 96.2 0.023 5E-07 42.1 6.8 55 130-192 5-62 (62)
131 KOG2068 MOT2 transcription fac 96.0 0.0054 1.2E-07 60.0 3.3 83 129-211 76-164 (327)
132 KOG0115 RNA-binding protein p5 95.7 0.013 2.8E-07 55.1 4.4 77 131-208 32-112 (275)
133 KOG2591 c-Mpl binding protein, 95.5 0.02 4.3E-07 59.3 5.3 69 130-205 175-247 (684)
134 KOG4307 RNA binding protein RB 95.1 0.018 4E-07 61.0 3.7 77 129-206 433-510 (944)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.046 1E-06 49.8 5.7 84 129-212 6-100 (176)
136 PF15023 DUF4523: Protein of u 94.9 0.12 2.5E-06 44.6 7.3 75 125-207 81-159 (166)
137 KOG1365 RNA-binding protein Fu 94.7 0.08 1.7E-06 52.6 6.6 72 131-204 162-237 (508)
138 KOG4660 Protein Mei2, essentia 94.7 0.044 9.5E-07 57.0 4.9 81 128-208 386-471 (549)
139 PF07576 BRAP2: BRCA1-associat 93.8 0.49 1.1E-05 39.5 8.6 68 130-199 13-81 (110)
140 KOG4285 Mitotic phosphoprotein 93.6 0.22 4.8E-06 48.1 7.0 68 131-206 198-266 (350)
141 PF03880 DbpA: DbpA RNA bindin 93.3 0.34 7.5E-06 37.3 6.5 67 132-207 2-74 (74)
142 PF04847 Calcipressin: Calcipr 93.1 0.33 7.2E-06 44.5 7.2 62 143-210 8-71 (184)
143 KOG4210 Nuclear localization s 92.6 0.087 1.9E-06 51.8 2.8 82 129-210 87-168 (285)
144 KOG2318 Uncharacterized conser 92.5 0.51 1.1E-05 49.6 8.2 80 127-206 171-302 (650)
145 KOG4483 Uncharacterized conser 92.4 1.2 2.6E-05 44.8 10.3 56 129-191 390-446 (528)
146 KOG4574 RNA-binding protein (c 91.7 0.26 5.6E-06 53.8 5.2 73 131-209 299-373 (1007)
147 KOG0804 Cytoplasmic Zn-finger 91.1 0.75 1.6E-05 47.0 7.5 67 130-199 74-142 (493)
148 KOG4454 RNA binding protein (R 89.3 0.059 1.3E-06 49.7 -1.8 69 129-198 79-151 (267)
149 KOG4246 Predicted DNA-binding 86.2 8.5 0.00018 42.5 11.6 12 137-148 194-205 (1194)
150 KOG2888 Putative RNA binding p 86.2 0.84 1.8E-05 44.7 3.8 13 142-154 169-181 (453)
151 PF11767 SET_assoc: Histone ly 84.3 5.3 0.00012 30.0 6.6 56 141-205 11-66 (66)
152 PRK11634 ATP-dependent RNA hel 83.0 13 0.00028 41.0 11.9 61 140-209 497-562 (629)
153 KOG2888 Putative RNA binding p 82.1 1.4 3E-05 43.2 3.4 11 172-182 160-170 (453)
154 KOG2193 IGF-II mRNA-binding pr 81.2 0.093 2E-06 52.7 -4.9 75 130-207 80-154 (584)
155 smart00596 PRE_C2HC PRE_C2HC d 77.0 4.3 9.3E-05 30.7 3.9 60 145-207 2-62 (69)
156 KOG4019 Calcineurin-mediated s 76.1 2.8 6E-05 37.8 3.2 76 128-209 8-89 (193)
157 COG5638 Uncharacterized conser 74.3 13 0.00028 37.7 7.6 74 127-200 143-286 (622)
158 KOG0113 U1 small nuclear ribon 73.4 36 0.00078 33.3 10.1 48 104-155 112-164 (335)
159 PF07530 PRE_C2HC: Associated 73.0 8.4 0.00018 29.1 4.7 61 145-208 2-63 (68)
160 KOG4410 5-formyltetrahydrofola 69.9 16 0.00034 35.4 6.8 58 130-193 330-395 (396)
161 KOG0226 RNA-binding proteins [ 69.3 2.9 6.2E-05 39.8 1.7 73 132-205 98-173 (290)
162 KOG2295 C2H2 Zn-finger protein 64.6 0.79 1.7E-05 47.9 -3.1 73 129-201 230-302 (648)
163 PF03468 XS: XS domain; Inter 62.9 12 0.00025 31.6 4.1 56 132-190 10-75 (116)
164 KOG4207 Predicted splicing fac 61.0 1.4E+02 0.0031 27.8 11.1 21 177-197 63-85 (256)
165 KOG1295 Nonsense-mediated deca 60.2 11 0.00023 38.2 3.9 68 130-197 7-77 (376)
166 COG0724 RNA-binding proteins ( 57.4 13 0.00029 34.8 4.1 63 127-189 222-284 (306)
167 KOG4246 Predicted DNA-binding 56.6 1.5E+02 0.0033 33.2 11.9 12 129-140 144-155 (1194)
168 PF10567 Nab6_mRNP_bdg: RNA-re 54.2 22 0.00048 34.7 4.8 79 129-207 14-105 (309)
169 KOG2548 SWAP mRNA splicing reg 51.4 11 0.00025 39.3 2.6 18 44-61 71-88 (653)
170 KOG2253 U1 snRNP complex, subu 50.3 1.3 2.7E-05 47.5 -4.5 7 10-16 4-10 (668)
171 CHL00123 rps6 ribosomal protei 46.6 81 0.0017 25.5 6.4 59 131-191 9-81 (97)
172 KOG0151 Predicted splicing reg 45.2 18 0.00038 39.5 2.9 11 197-207 633-643 (877)
173 KOG2891 Surface glycoprotein [ 42.9 38 0.00082 32.7 4.4 69 128-196 147-246 (445)
174 KOG4008 rRNA processing protei 42.6 29 0.00064 32.7 3.6 32 129-160 39-70 (261)
175 PF05042 Caleosin: Caleosin re 39.9 1.3E+02 0.0029 27.2 7.2 89 69-157 5-108 (174)
176 KOG4365 Uncharacterized conser 39.5 4.9 0.00011 41.0 -2.1 78 131-209 4-81 (572)
177 PF09707 Cas_Cas2CT1978: CRISP 38.3 53 0.0012 26.1 4.0 49 129-180 24-72 (86)
178 PF15513 DUF4651: Domain of un 38.2 66 0.0014 23.8 4.1 18 145-162 9-26 (62)
179 KOG0835 Cyclin L [General func 37.6 33 0.00071 34.1 3.2 6 40-45 37-42 (367)
180 KOG4840 Predicted hydrolases o 37.6 47 0.001 31.4 4.1 74 130-207 37-115 (299)
181 KOG3702 Nuclear polyadenylated 34.9 20 0.00042 38.8 1.3 73 131-204 512-584 (681)
182 PRK11901 hypothetical protein; 34.7 2.6E+02 0.0056 28.0 8.9 61 129-194 244-306 (327)
183 PF03439 Spt5-NGN: Early trans 31.8 85 0.0018 24.6 4.3 36 156-196 33-68 (84)
184 PRK14548 50S ribosomal protein 28.1 2.1E+02 0.0045 22.6 5.8 55 134-191 24-80 (84)
185 KOG2548 SWAP mRNA splicing reg 27.5 38 0.00083 35.6 1.9 18 53-70 86-103 (653)
186 KOG0796 Spliceosome subunit [R 27.3 35 0.00075 33.8 1.5 7 25-31 6-12 (319)
187 PF08734 GYD: GYD domain; Int 27.1 1.8E+02 0.0039 23.2 5.4 44 144-191 22-66 (91)
188 KOG4213 RNA-binding protein La 26.8 1.4E+02 0.003 27.2 5.1 49 142-191 118-169 (205)
189 PRK11558 putative ssRNA endonu 26.6 90 0.002 25.4 3.6 51 129-182 26-76 (97)
190 COG5193 LHP1 La protein, small 26.1 37 0.0008 34.6 1.5 60 130-189 174-243 (438)
191 KOG0149 Predicted RNA-binding 26.1 12 0.00026 35.3 -1.7 51 69-119 25-76 (247)
192 COG3254 Uncharacterized conser 26.0 1.8E+02 0.0039 23.9 5.2 42 145-189 27-68 (105)
193 KOG1923 Rac1 GTPase effector F 25.8 71 0.0015 35.4 3.7 13 5-17 254-266 (830)
194 KOG4388 Hormone-sensitive lipa 25.8 2.7E+02 0.0059 30.3 7.7 60 127-192 786-851 (880)
195 COG0150 PurM Phosphoribosylami 25.6 33 0.00071 34.4 1.1 48 144-195 275-322 (345)
196 PF08206 OB_RNB: Ribonuclease 24.5 35 0.00075 24.7 0.8 38 170-208 6-44 (58)
197 PF00403 HMA: Heavy-metal-asso 23.3 2.4E+02 0.0053 20.0 5.2 54 132-191 1-58 (62)
198 COG5178 PRP8 U5 snRNP spliceos 23.2 84 0.0018 36.6 3.7 37 129-165 71-107 (2365)
199 PF12829 Mhr1: Transcriptional 22.3 2.3E+02 0.0049 22.8 5.0 52 138-193 20-72 (91)
200 TIGR01873 cas_CT1978 CRISPR-as 21.6 66 0.0014 25.6 1.9 50 129-181 24-74 (87)
201 PRK08559 nusG transcription an 20.9 2.4E+02 0.0053 24.8 5.6 35 157-196 36-70 (153)
202 PF05189 RTC_insert: RNA 3'-te 20.7 1.7E+02 0.0037 23.7 4.3 49 132-180 12-65 (103)
No 1
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=280.08 Aligned_cols=190 Identities=63% Similarity=1.020 Sum_probs=174.1
Q ss_pred CCCChhhhcccCCCCCCCCCCC----CCCCCCCCCCChHHHHhhcCCCCCCCCC----CchhHHHHhhHHHHhhhHHHHH
Q 011980 40 TGLTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYA----PPVERRARIHKLRLEKGAEKAA 111 (473)
Q Consensus 40 ~~~pp~l~~lf~p~pP~~~~pp----~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~ 111 (473)
+.|||||++||+|.||++++|| |....+.++++|++|+..|..+.+.... .+.+..++.....+++...++.
T Consensus 3 ~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~~~tGvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~ 82 (335)
T KOG0113|consen 3 QFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTNPYTGVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLE 82 (335)
T ss_pred ccCCccHHHhcCCCCCcccCCccccChhhccCCCcccHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHH
Confidence 5689999999999999999999 5567888999999999999987763322 3346667777778888888889
Q ss_pred HHHhhcCCCCCCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHH
Q 011980 112 EELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~ 191 (473)
..+..|+|..++++..+|.+||||+-|+..++|..|+.+|+.||.|+.|.||.++.||+++|||||+|+++.++.+|++.
T Consensus 83 ~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 83 RRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred HHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeCCEEEEEeeecCCCCCCCCCCccCCCCCCCCC
Q 011980 192 ADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRV 229 (473)
Q Consensus 192 l~g~~i~gr~l~V~~a~~~~~~~~~~~~~gg~~~g~~~ 229 (473)
.+|.+|+|+.|.|.+..+++++.|.|++.|||+||...
T Consensus 163 adG~~Idgrri~VDvERgRTvkgW~PRRLGGGLGg~r~ 200 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVERGRTVKGWLPRRLGGGLGGRRY 200 (335)
T ss_pred ccCceecCcEEEEEecccccccccccccccCCcCCccc
Confidence 99999999999999999999999999999999998764
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.6e-18 Score=151.35 Aligned_cols=85 Identities=26% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+..|++++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 011980 208 RGRTV 212 (473)
Q Consensus 208 ~~~~~ 212 (473)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86544
No 3
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.9e-18 Score=162.47 Aligned_cols=121 Identities=27% Similarity=0.438 Sum_probs=101.1
Q ss_pred HhhHHHHhhhHHHHHHHHhhcCCCCCCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEE
Q 011980 97 RIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF 176 (473)
Q Consensus 97 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~af 176 (473)
.+.....+.++...+..|+.+...+...+ .+|.+.|||+.|++.+|.++|..+|+.||+|..|.|+.|..||.+..|||
T Consensus 207 el~e~~~e~ea~~~A~iLEmvGDlpdAd~-~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaF 285 (479)
T KOG0415|consen 207 ELEEVLAEKEAKAQAVILEMVGDLPDADV-KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAF 285 (479)
T ss_pred HHHHHHHHHHHHhhHhHHHHhcCCccccc-CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheee
Confidence 34444555555556666666665555444 45889999999999999999999999999999999999999999999999
Q ss_pred EEeechHHHHHHHHHcCCceeCCEEEEEeeecCCCCCCCCCC
Q 011980 177 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 218 (473)
Q Consensus 177 Vef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~~~~~~~~~ 218 (473)
|+|++.++|++|+-.|++..|+++.|+|.|+++-..-.|++.
T Consensus 286 iEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k 327 (479)
T KOG0415|consen 286 IEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQK 327 (479)
T ss_pred eeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhcccc
Confidence 999999999999999999999999999999987555455543
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.7e-17 Score=143.09 Aligned_cols=79 Identities=30% Similarity=0.666 Sum_probs=73.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
-.++||||||+..+++.+|+.+|..||.|..|+|..+ +.|||||||+++.+|+.|+..|+|..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4679999999999999999999999999999999865 46999999999999999999999999999999999998
Q ss_pred CCCC
Q 011980 209 GRTV 212 (473)
Q Consensus 209 ~~~~ 212 (473)
+...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7554
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=1.3e-17 Score=167.29 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=109.2
Q ss_pred CChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCCCC-----------CCCCCCCCcEEEEccC
Q 011980 71 TGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPHND-----------PNVSGDPYKTLFVARL 138 (473)
Q Consensus 71 ~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~V~nL 138 (473)
..|..+|..|+.+..+.++ ...+...+.+.++.+...+.+..++..+..... +.......++|||+||
T Consensus 122 ~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nL 201 (346)
T TIGR01659 122 RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNL 201 (346)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCC
Confidence 4466677777777666554 334566677777777666666666554432110 1111224678999999
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC--EEEEEeeecCCC
Q 011980 139 SYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVLVDVERGRT 211 (473)
Q Consensus 139 ~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g--r~l~V~~a~~~~ 211 (473)
|+.||+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||++.|.+ +.|.|.++....
T Consensus 202 p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 202 PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999999999999999999999999999999999999999999999999998866 789999987643
No 6
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.68 E-value=1e-15 Score=136.38 Aligned_cols=82 Identities=34% Similarity=0.602 Sum_probs=78.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|-|-||.+-|+.++|..+|++||.|-+|.|+.|..|..++|||||-|....+|+.|+.+|+|.+|+|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 53
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=2.9e-16 Score=165.82 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=113.9
Q ss_pred CChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCCC-------------CCC---------CCC
Q 011980 71 TGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPHN-------------DPN---------VSG 127 (473)
Q Consensus 71 ~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---------~~~ 127 (473)
..+..+|..|+.+..+.+. ...++..+++.|+.+...+.+..++..++... .+. ...
T Consensus 122 e~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~ 201 (612)
T TIGR01645 122 DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEA 201 (612)
T ss_pred HHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccc
Confidence 3466677777776665554 33456677888888777777766665443210 000 011
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
...++|||+||++.+++++|+.+|+.||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 23578999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCCCCCC
Q 011980 208 RGRTVPNWR 216 (473)
Q Consensus 208 ~~~~~~~~~ 216 (473)
...+...+.
T Consensus 282 i~pP~~~~~ 290 (612)
T TIGR01645 282 VTPPDALLQ 290 (612)
T ss_pred CCCccccCC
Confidence 865544443
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.6e-16 Score=129.09 Aligned_cols=81 Identities=32% Similarity=0.564 Sum_probs=77.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.++|||||||+..++|++|.++|++||+|..|.|-.|+.+..++|||||+|.+.++|+.||+.++|+.|+.+.|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=4e-15 Score=151.04 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=78.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.+|||+|||+.+++++|.++|++||.|..|.|+.+..||.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 643
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=5.4e-15 Score=148.38 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=79.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....++|||+|||+++|+++|+++|+.||+|+.|.|+.+..|+.++|||||+|.++++|+.||+.|||..|.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 864
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=7.1e-15 Score=112.67 Aligned_cols=70 Identities=29% Similarity=0.697 Sum_probs=66.8
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 133 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 133 l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
|||+|||+.+|+++|..+|++||.|..+.|+.+ .++..++||||+|.+.++|..|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999987 5688999999999999999999999999999999885
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.57 E-value=8.2e-15 Score=148.77 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=78.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||..+++++|.++|+.||+|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 53
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=1.4e-14 Score=154.46 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=77.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
...+|||+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||+.|||..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=1.2e-14 Score=152.87 Aligned_cols=79 Identities=30% Similarity=0.633 Sum_probs=76.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.++|||+|||..+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999889999999999999999999999999999999999999976
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.8e-14 Score=131.87 Aligned_cols=83 Identities=30% Similarity=0.466 Sum_probs=79.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
...++|-|.||+.++++.+|.++|.+||.|..|.|..|+.||.++|||||.|.+.++|.+||..|||+-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011980 208 RGR 210 (473)
Q Consensus 208 ~~~ 210 (473)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.4e-14 Score=130.90 Aligned_cols=135 Identities=19% Similarity=0.299 Sum_probs=109.6
Q ss_pred CCChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCC--------------C-------------
Q 011980 70 LTGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPH--------------N------------- 121 (473)
Q Consensus 70 ~~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~------------- 121 (473)
...+.+.|..|+++.++.+. ++.+.++++.+|+.+-..+.+.-++..+... .
T Consensus 76 ~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfde 155 (321)
T KOG0148|consen 76 NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDE 155 (321)
T ss_pred hHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHH
Confidence 35567778889999998877 7778899999888776655554444332210 0
Q ss_pred CCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE
Q 011980 122 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 201 (473)
Q Consensus 122 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~ 201 (473)
.-+...+..++||||||+..+|++.|+..|+.||.|..|+|..+ +|||||.|.+.|+|..||..|||.+|+|..
T Consensus 156 V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~ 229 (321)
T KOG0148|consen 156 VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQL 229 (321)
T ss_pred HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceE
Confidence 01233556899999999999999999999999999999999876 589999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011980 202 VLVDVERGR 210 (473)
Q Consensus 202 l~V~~a~~~ 210 (473)
++|.|.+..
T Consensus 230 VkCsWGKe~ 238 (321)
T KOG0148|consen 230 VRCSWGKEG 238 (321)
T ss_pred EEEeccccC
Confidence 999998753
No 17
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.3e-15 Score=137.80 Aligned_cols=88 Identities=20% Similarity=0.412 Sum_probs=82.9
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
...++.+|+|||-.||.+..+.+|..+|-.||.|++.+|..|..|+.+|+|+||.|.++.+|++||.+|||+.|+-+.|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|.+.+++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99988754
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4e-14 Score=124.14 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=72.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||||||..|.+.+|+.+|-+||.|..|.|... ..+.+||||+|+++.+|+.||..-+|..++|..|.|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5689999999999999999999999999999988653 3356899999999999999999999999999999999988
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
+..
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 643
No 19
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.4e-15 Score=132.99 Aligned_cols=84 Identities=32% Similarity=0.508 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.-|||||||+.+|+.+|..+|++||+|+.|.|+.|+.||+++||||+.|+++.+...|+..|||..|.|+.|.|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCC
Q 011980 209 GRTV 212 (473)
Q Consensus 209 ~~~~ 212 (473)
....
T Consensus 114 ~Yk~ 117 (219)
T KOG0126|consen 114 NYKK 117 (219)
T ss_pred cccC
Confidence 5433
No 20
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2.7e-14 Score=130.30 Aligned_cols=80 Identities=28% Similarity=0.583 Sum_probs=73.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++||||||+|.+..+.|..+|++||+|+.+.|+.|+.||+++||+||+|.+.++|..|++.. +-.|+|++..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4578999999999999999999999999999999999999999999999999999999999754 456999999998865
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=3.3e-14 Score=153.28 Aligned_cols=137 Identities=19% Similarity=0.304 Sum_probs=102.5
Q ss_pred ChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCCCC----------------------------
Q 011980 72 GMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHNDP---------------------------- 123 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 123 (473)
.+..+|..|+.+..+.+........++++++.+...+.+..++..+......
T Consensus 194 ~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~ 273 (562)
T TIGR01628 194 KLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFE 273 (562)
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHH
Confidence 3556666777665554443334445555565555555554444433221110
Q ss_pred -----CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 124 -----NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 124 -----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
.......++|||+||++.+|+++|.++|+.||.|+.|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|+
T Consensus 274 ~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~ 352 (562)
T TIGR01628 274 ELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG 352 (562)
T ss_pred hhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC
Confidence 011335678999999999999999999999999999999998 57999999999999999999999999999999
Q ss_pred CEEEEEeeecC
Q 011980 199 GRRVLVDVERG 209 (473)
Q Consensus 199 gr~l~V~~a~~ 209 (473)
|+.|.|.++..
T Consensus 353 gk~l~V~~a~~ 363 (562)
T TIGR01628 353 GKPLYVALAQR 363 (562)
T ss_pred CceeEEEeccC
Confidence 99999999875
No 22
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.5e-14 Score=117.19 Aligned_cols=82 Identities=33% Similarity=0.485 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+..|||.++...+|+++|...|..||+|++|.|..|..||..+|||+|+|++.+.|++||..|||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 53
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=9.9e-14 Score=128.57 Aligned_cols=83 Identities=24% Similarity=0.488 Sum_probs=78.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
...-|||+.|...|+.+.|++.|.+||+|..++|+.|..|+++|||+||.|...++|+.||..|||.+|+++.|...|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
.++
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 554
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.2e-13 Score=146.05 Aligned_cols=79 Identities=33% Similarity=0.617 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
..++|||+||++.+++++|..+|.+||.|..|.|+.++.||+++|||||+|.+.++|..||+.|||..|+|+.|.|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999854
No 25
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.7e-13 Score=129.25 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=70.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.++|||+||++.+|+++|+++|+.||+|..|.|+.+.. .+|||||+|.+.++|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998753 56899999999999999994 999999999999999764
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.5e-13 Score=105.67 Aligned_cols=70 Identities=33% Similarity=0.765 Sum_probs=64.9
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 133 LFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 133 l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
|||+|||+.+++++|..+|+.||.|..+.+..++. +.++++|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 88999999999999999999999999999999874
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=2.8e-13 Score=134.56 Aligned_cols=79 Identities=18% Similarity=0.386 Sum_probs=72.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeech--HHHHHHHHHcCCceeCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT--RDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~--~~a~~Al~~l~g~~i~gr~l~V 204 (473)
......||||||++.|++++|..+|..||.|..|.|+ ..|| +|||||+|... .++.+||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456799999999999999999999999999999999 4567 89999999987 6899999999999999999999
Q ss_pred eeecC
Q 011980 205 DVERG 209 (473)
Q Consensus 205 ~~a~~ 209 (473)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98764
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.1e-13 Score=119.70 Aligned_cols=82 Identities=28% Similarity=0.409 Sum_probs=78.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.+...|||||||+..++++.|+++|-++|+|+.|.|+.++.|....|||||+|.++++|+-||+.||...|-|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 29
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.4e-13 Score=122.29 Aligned_cols=84 Identities=30% Similarity=0.536 Sum_probs=80.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++||||+|...|++.-|...|-.||.|+.|.|+.|..+++.+|||||+|...++|.+||..||+.+|.|+.|.|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011980 209 GRTV 212 (473)
Q Consensus 209 ~~~~ 212 (473)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7543
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.3e-12 Score=99.40 Aligned_cols=72 Identities=38% Similarity=0.702 Sum_probs=67.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
+|||+|||..++.++|..+|..||.|..+.++.+. +.+.|+|||+|.+.+.|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 7788999999999999999999999999999999874
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.40 E-value=1.5e-13 Score=138.90 Aligned_cols=83 Identities=33% Similarity=0.643 Sum_probs=77.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..|...||||||..++++++|..+|+.||.|..|.+..+..||.++||+||+|.+.+.|.+|++.|||++|.|+.|+|.+
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 34555599999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
...
T Consensus 355 v~~ 357 (549)
T KOG0147|consen 355 VTE 357 (549)
T ss_pred eee
Confidence 554
No 32
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=9.1e-13 Score=125.28 Aligned_cols=82 Identities=21% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....+.|+|.|||+...+-+|..+|++||+|.+|.|+.+. -.+|||+||+|++.++|++|-+.|||..|.|++|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4457889999999999999999999999999999999875 45799999999999999999999999999999999998
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8765
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.2e-13 Score=132.42 Aligned_cols=139 Identities=17% Similarity=0.270 Sum_probs=101.4
Q ss_pred CChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCC------CCCC---------CCCCCCCcEEE
Q 011980 71 TGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDP------HNDP---------NVSGDPYKTLF 134 (473)
Q Consensus 71 ~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~l~ 134 (473)
..+.++|+.|+.|.++.+. +..+..++++=|+.+...+...++.+.+-. ...+ ........+||
T Consensus 49 ~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLF 128 (510)
T KOG0144|consen 49 KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLF 128 (510)
T ss_pred HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhh
Confidence 4577777777777666554 444555555555555444444333332211 1111 00112367899
Q ss_pred EccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce-eC--CEEEEEeeecCC
Q 011980 135 VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LD--GRRVLVDVERGR 210 (473)
Q Consensus 135 V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~-i~--gr~l~V~~a~~~ 210 (473)
||.|+..+||.+|.++|.+||.|.+|.|+.+.. +.++|||||.|.+.+.|..||+.|||.. +. ..+|.|+|+.+.
T Consensus 129 vg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 129 VGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred hhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 999999999999999999999999999999986 9999999999999999999999999964 44 568999998764
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.8e-12 Score=120.42 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.+|||+||++.+|+++|++||+.||+|..|.|+.+. ...+||||+|.++++|..|| .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 45589999999999999999 699999999999998654
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.37 E-value=1.5e-12 Score=140.46 Aligned_cols=78 Identities=24% Similarity=0.520 Sum_probs=75.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
+|||+|||+.+|+++|.++|++||.|..|.|+.+..|++++|||||+|.+.++|++||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999753
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.37 E-value=1.6e-12 Score=137.44 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=73.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CEEEEEee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr~l~V~~ 206 (473)
...++|||+|||+++++++|..+|++||.|..|.|+.+ .+|.++|||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 68999999999999999999999999999885 78877766
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.37 E-value=3e-12 Score=135.35 Aligned_cols=76 Identities=29% Similarity=0.555 Sum_probs=70.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcC--CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESY--GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~--G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..++|||+||++.+++++|+++|+.| |.|..|.++ ++||||+|.+.++|++||+.|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999775 36999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 38
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2e-12 Score=130.18 Aligned_cols=81 Identities=26% Similarity=0.535 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+-..|+|.||||.+...+|+.+|+.||.|..|.|+.... |+.+|||||+|....+|..||+.|||..|+|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 467899999999999999999999999999999997765 6666999999999999999999999999999999999997
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
++
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 64
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.36 E-value=2.1e-12 Score=135.79 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 57899999999999999999999999999999999999999999999999999999999996 89999999999999865
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 40
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3.4e-12 Score=96.75 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=67.0
Q ss_pred EccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 135 VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 135 V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
|+|||..+++++|..+|..||.|..+.|..+..++.++|||||+|.+.+.|..|+..|++..|+|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888788999999999999999999999999999999998874
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.3e-12 Score=126.01 Aligned_cols=83 Identities=24% Similarity=0.391 Sum_probs=77.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee-CCEEEEEe
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL-DGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i-~gr~l~V~ 205 (473)
...++-||||.||.++.|++|.-+|++.|+|-.+.|+.|+.+|.++|||||+|.+.+.|+.||+.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999998 58999888
Q ss_pred eecC
Q 011980 206 VERG 209 (473)
Q Consensus 206 ~a~~ 209 (473)
++..
T Consensus 160 ~Sva 163 (506)
T KOG0117|consen 160 VSVA 163 (506)
T ss_pred Eeee
Confidence 7653
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5e-12 Score=100.91 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
...+..+..|||.|||..+|.+++.++|.+||.|..|.|-..+ ..+|-|||.|++..+|.+|+..|+|..++++.|.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3334457789999999999999999999999999999997754 3579999999999999999999999999999999
Q ss_pred Eeeec
Q 011980 204 VDVER 208 (473)
Q Consensus 204 V~~a~ 208 (473)
|-+-.
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 98754
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=2.5e-12 Score=131.03 Aligned_cols=81 Identities=31% Similarity=0.656 Sum_probs=78.4
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
++|||||||+.+++++|..+|+..|.|..++++.|+.||+++|||||+|.+.+.|..|+..|||.++.|++|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 011980 211 T 211 (473)
Q Consensus 211 ~ 211 (473)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=5.1e-12 Score=122.09 Aligned_cols=80 Identities=40% Similarity=0.770 Sum_probs=77.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
..+|||+|||+.+|+++|..+|..||.|..|.|+.+..++.++|||||+|.+.++|..||..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999653
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=1.8e-12 Score=121.48 Aligned_cols=130 Identities=21% Similarity=0.340 Sum_probs=97.1
Q ss_pred CCChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhh-hHHHHHHHHhhcCCCC------CCCCCCCCCcEEEEccCCCCC
Q 011980 70 LTGMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEK-GAEKAAEELKKYDPHN------DPNVSGDPYKTLFVARLSYET 142 (473)
Q Consensus 70 ~~~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~V~nL~~~~ 142 (473)
.+.+.++|+.|+.+.+|+++.. .+|.....+ .++.+...|..+.-.. ..+....+.++||||||.+.+
T Consensus 16 ~~elr~lFe~ygkVlECDIvKN-----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tc 90 (346)
T KOG0109|consen 16 EQELRSLFEQYGKVLECDIVKN-----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTC 90 (346)
T ss_pred hHHHHHHHHhhCceEeeeeecc-----cceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccc
Confidence 4567888999999988887632 122222222 2222333344333221 111224468899999999999
Q ss_pred CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCCCC
Q 011980 143 TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 212 (473)
Q Consensus 143 te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~~~ 212 (473)
+..+|+..|++||.|+.+.|+. +|+||-|.-.++|..||..|+|.+|.|+.|+|+++.++..
T Consensus 91 tn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 91 TNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred cCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999999999999999999985 5999999999999999999999999999999999987543
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8.5e-12 Score=115.06 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=78.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.+|||-||.+++.+..|+.+|.+||.|..|+|+.|..|.+++||+||.+.+-++|..||..|||+.++++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 43
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=1.5e-11 Score=94.01 Aligned_cols=74 Identities=36% Similarity=0.717 Sum_probs=68.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
+|||+|||+.+++++|..+|..||.|..+.+..+..+ .+.|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987653 6789999999999999999999999999999999864
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.4e-12 Score=115.45 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=78.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+..+.|+|.-||.++|+++|+.+|...|+|..|+++.|+.+|++.||+||.|..+++|++||..|||..|..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011980 208 RGR 210 (473)
Q Consensus 208 ~~~ 210 (473)
++.
T Consensus 119 RPS 121 (360)
T KOG0145|consen 119 RPS 121 (360)
T ss_pred cCC
Confidence 873
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=2.1e-11 Score=128.86 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCCcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.++++|||+||++ .+|+++|..+|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998753 58999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 87643
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=4.5e-12 Score=121.77 Aligned_cols=77 Identities=34% Similarity=0.646 Sum_probs=74.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
-|.||||.|.+.+.++.|+..|..||.|++|.+.+|+.|++.+|||||+|+-++.|+.|++.|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999874
No 51
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.24 E-value=2.1e-13 Score=132.02 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=54.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
..||+|++|+..+...++.++|..+|+|.+..|.. +....+|.|+|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 47899999999999999999999999999887764 4456788899999999999997 6777765
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3e-11 Score=121.78 Aligned_cols=81 Identities=35% Similarity=0.581 Sum_probs=75.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc-----CC-ceeCCEEEE
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-----DG-RKLDGRRVL 203 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l-----~g-~~i~gr~l~ 203 (473)
..+|||.|||+.+|+++|.++|.+||+|.++.|+.++.|+.++|.|||.|.++.+|..||.+. .| +.|+|+.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 589999999999999999999999999999999999999999999999999999999999876 33 678999999
Q ss_pred EeeecCC
Q 011980 204 VDVERGR 210 (473)
Q Consensus 204 V~~a~~~ 210 (473)
|..+-++
T Consensus 372 v~~Av~R 378 (678)
T KOG0127|consen 372 VTLAVTR 378 (678)
T ss_pred eeeccch
Confidence 9987653
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.21 E-value=8.3e-12 Score=109.72 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=76.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccE-EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+..|||+||.+.+.+..|..+|+.||.|.. -.|+.+..||.++|||||.|.+.+.+.+||..|||..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 445678999999999999999999999998765 4788889999999999999999999999999999999999999999
Q ss_pred eecCC
Q 011980 206 VERGR 210 (473)
Q Consensus 206 ~a~~~ 210 (473)
++...
T Consensus 173 ya~k~ 177 (203)
T KOG0131|consen 173 YAFKK 177 (203)
T ss_pred EEEec
Confidence 98753
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=6.2e-11 Score=125.27 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHH--cCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ--ADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~--l~g~~i~gr~l~V~~ 206 (473)
|+++|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|.+.++|.+||.. +++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5689999999999999999999999999999998853 57999999999999999986 478999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=6.5e-11 Score=91.10 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=55.2
Q ss_pred HHHHHHHHh----cCCCccEEE-ecccCCC--CCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 144 ESKIKREFE----SYGPIKRVR-LVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 144 e~~L~~~F~----~~G~v~~v~-i~~d~~t--g~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
+++|..+|. +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999995 7776666 8999999999999999999999999999999999863
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=2.6e-11 Score=113.73 Aligned_cols=73 Identities=25% Similarity=0.508 Sum_probs=68.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
-+|||||||..+++.+|..+|++||+|..|.|++ .||||-.++...|..||..|||.+|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3799999999999999999999999999999986 49999999999999999999999999999999998876
Q ss_pred C
Q 011980 211 T 211 (473)
Q Consensus 211 ~ 211 (473)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=9e-11 Score=86.10 Aligned_cols=56 Identities=30% Similarity=0.710 Sum_probs=50.8
Q ss_pred HHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 147 IKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 147 L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
|..+|++||+|..|.+.... .++|||+|.+.++|..|+..|||..|+|+.|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997643 589999999999999999999999999999999986
No 58
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.1e-11 Score=117.71 Aligned_cols=73 Identities=33% Similarity=0.605 Sum_probs=68.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..+.|||.||+..||++.|+++|++||.|..|+.+.| ||||-|.+.++|.+|++.|||++|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3678999999999999999999999999999987754 99999999999999999999999999999999998
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 330 P 330 (506)
T KOG0117|consen 330 P 330 (506)
T ss_pred C
Confidence 6
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=4.6e-11 Score=127.41 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=67.9
Q ss_pred CCCcEEEEccCCCC--C--------CHHHHHHHHhcCCCccEEEecccC---CCCCCceeEEEEeechHHHHHHHHHcCC
Q 011980 128 DPYKTLFVARLSYE--T--------TESKIKREFESYGPIKRVRLVTDK---ETNKPRGYAFIEYMHTRDMKAAYKQADG 194 (473)
Q Consensus 128 ~~~~~l~V~nL~~~--~--------te~~L~~~F~~~G~v~~v~i~~d~---~tg~~kg~afVef~~~~~a~~Al~~l~g 194 (473)
.++.+|+|.||... + ..++|.++|++||.|+.|.|+.+. .++...|||||+|.+.++|++||..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 36788999998532 1 235789999999999999998652 3455679999999999999999999999
Q ss_pred ceeCCEEEEEeeec
Q 011980 195 RKLDGRRVLVDVER 208 (473)
Q Consensus 195 ~~i~gr~l~V~~a~ 208 (473)
.+|+|+.|.|.|..
T Consensus 487 r~~~gr~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDRVVVAAFYG 500 (509)
T ss_pred CEECCeEEEEEEeC
Confidence 99999999999864
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=8.2e-11 Score=115.73 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=82.1
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
...++.+..|||.+||.+.-+.+|...|..||.|+..++..|+.|+-+++|+||.|++..+|..||..|||..|+.+.|+
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krlk 497 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLK 497 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccce
Confidence 44466788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|.++..+.
T Consensus 498 VQlk~~~~ 505 (510)
T KOG0144|consen 498 VQLKRDRN 505 (510)
T ss_pred EEeeeccC
Confidence 99987643
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=112.28 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=74.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.|||..+.+++++++|+.+|+.||+|++|.+...+.++..+||+||+|.+..+...||..||-+.|+|+.|.|--+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 5689999999999999999999999999999999999989999999999999999999999999999999999997543
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.08 E-value=7.1e-11 Score=115.59 Aligned_cols=142 Identities=23% Similarity=0.336 Sum_probs=115.0
Q ss_pred CCCChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCCC-----CCC-----------CCCCCCc
Q 011980 69 PLTGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPHN-----DPN-----------VSGDPYK 131 (473)
Q Consensus 69 ~~~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~ 131 (473)
....+..++..|+++.+|.++ .+.+..+++|+++.++....+...+....... +++ .......
T Consensus 19 tee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tk 98 (311)
T KOG4205|consen 19 TEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTK 98 (311)
T ss_pred cHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccccccccccccee
Confidence 445678888999999998888 66778899999999886666655554422211 000 0112356
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCCC
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 211 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~~ 211 (473)
+|||++||..+++++|+.+|.+||.|..+.|+.|..+..++||+||+|.+.+.+.+++. ..-+.|+|+.|.|..|.++.
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 99999999999999999999999999999999999999999999999999999999985 67788999999999887754
No 63
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=1.8e-09 Score=109.35 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=77.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
..+.+|||.+|...+...+|+.||++||+|+..+|+.+..+...+||+||++.+.+.|.+||..|+-++|.|+.|.|+-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 35788999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=6.2e-10 Score=109.60 Aligned_cols=79 Identities=20% Similarity=0.462 Sum_probs=73.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHHh-cCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 130 YKTLFVARLSYETTESKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~-~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.+||+|||+++.|++|+.+|. +.|+|.+|.|+.|.. |+++|||.|||.+++.+++|++.||.+.+.|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999994 689999999999974 9999999999999999999999999999999999998755
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=6e-10 Score=100.22 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcC-CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESY-GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~-G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
....+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++.+.|.-|.+.||++.|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999999999999999988 78888888899999999999999999999999999999999999999999885
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 54
No 66
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-09 Score=108.90 Aligned_cols=84 Identities=20% Similarity=0.362 Sum_probs=71.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
...+|||.|||.+++..+|+++|..||.|+...|..-...++..+||||+|.+.++++.||++ +-..|+++.|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 355699999999999999999999999999887766443355559999999999999999975 5888999999999987
Q ss_pred CCCCC
Q 011980 209 GRTVP 213 (473)
Q Consensus 209 ~~~~~ 213 (473)
+....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 64433
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=2.6e-09 Score=112.05 Aligned_cols=78 Identities=26% Similarity=0.478 Sum_probs=72.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.++|||||+|+.+|++.+|..+|+.||+|..|.++. ++|||||.+....+|.+||++|+++.|.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 478999999999999999999999999999998865 46899999999999999999999999999999999988
Q ss_pred CCCC
Q 011980 209 GRTV 212 (473)
Q Consensus 209 ~~~~ 212 (473)
+...
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 7543
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.99 E-value=1.1e-09 Score=100.12 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=72.8
Q ss_pred CCcEEEEccCCCCCCHHHHHH----HHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKR----EFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~----~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
|..||||-||+..+..++|+. +|++||+|..|.... |.+.+|-|||.|.+.+.|..|+.+|+|..|-|+.+.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455999999999999988776 999999999987765 6889999999999999999999999999999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
+||+...
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998643
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.1e-09 Score=110.76 Aligned_cols=75 Identities=21% Similarity=0.503 Sum_probs=70.5
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.|||.||++.++...|..+|+.||+|.+|+|..+.. | ++|| ||+|++++.|.+||..|||..+.|+.|.|.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 399999999999999999999999999999999875 5 9999 9999999999999999999999999999977654
No 70
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.95 E-value=1e-09 Score=106.81 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=59.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCC---CCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~---tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...|.|.||.+.+|.++|+.+|...|+|..+.|+.+.. .....-.|||.|.+...+..|.. |.++.|-+..|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 34899999999999999999999999999998876432 23345689999999999999875 55555555554443
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=97.42 Aligned_cols=75 Identities=25% Similarity=0.485 Sum_probs=66.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHH-cCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ-ADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~-l~g~~i~gr~l~V~~a 207 (473)
...+|||++|...+++.+|..+|.+||+|..|.++.. +++|||+|.+.++|+.|... +|...|+|..|.|.|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4678999999999999999999999999999998764 36999999999999977765 5667799999999998
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 86
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.7e-09 Score=111.27 Aligned_cols=114 Identities=21% Similarity=0.402 Sum_probs=91.0
Q ss_pred HHhhHHHHhhhHHHHHHHHhhcCCCC-----------C--------CCCC-CCCCcEEEEccCCCCCCHHHHHHHHhcCC
Q 011980 96 ARIHKLRLEKGAEKAAEELKKYDPHN-----------D--------PNVS-GDPYKTLFVARLSYETTESKIKREFESYG 155 (473)
Q Consensus 96 ~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~--------~~~~-~~~~~~l~V~nL~~~~te~~L~~~F~~~G 155 (473)
+.+++|+.+...+.+..++..+.... . .... ...+++|+|.|||+..+..+|+.+|..||
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 34677777777666666655544100 0 1111 22357899999999999999999999999
Q ss_pred CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 156 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 156 ~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.|..|.|+.-...+..+|||||+|-++..|..|+.+|..+-|-|+.|.++|+..
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 999999988755577799999999999999999999999999999999999875
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=2.3e-09 Score=96.92 Aligned_cols=80 Identities=16% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
....||||+||...|+++-|.++|-+.|+|..|.|..+.. ++.+ ||||+|.++..+.-|+++|||..+.+..|.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3467999999999999999999999999999999988875 6666 9999999999999999999999999999998875
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
.+
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 44
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.79 E-value=4.4e-09 Score=103.12 Aligned_cols=82 Identities=29% Similarity=0.534 Sum_probs=74.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++||||+|+|.++++.|..+|.+||+|..|.|+.++.++.++||+||+|++.+.+.++|. ...+.|+|+.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56899999999999999999999999999999999999999999999999999999999885 45678999999888877
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 643
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=1.2e-08 Score=96.47 Aligned_cols=82 Identities=30% Similarity=0.534 Sum_probs=77.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.....|||+|+...+|.++|..+|+.||.|..+.|++++.+++++|||||+|.+.+.++.||. |||..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999998 9999999999999998
Q ss_pred cCC
Q 011980 208 RGR 210 (473)
Q Consensus 208 ~~~ 210 (473)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.76 E-value=1.2e-08 Score=100.59 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=68.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
..|+|||.|||.++||+.|+.-|..||.|.++.|+. .|+.+| .|.|.++++|+.|+..|+|..|+|+.|.|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 578899999999999999999999999999999954 477777 89999999999999999999999999999873
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.6e-08 Score=105.58 Aligned_cols=77 Identities=25% Similarity=0.519 Sum_probs=69.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCC---CCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET---NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~t---g~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+|||.||++.+|.+.|..+|...|.|..+.|...+.. -.+.|||||+|.+.++|+.||+.|+|+.|+|..|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988765432 1245999999999999999999999999999999999987
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.7e-08 Score=93.89 Aligned_cols=81 Identities=20% Similarity=0.462 Sum_probs=72.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce-eC--CEEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LD--GRRVLV 204 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~-i~--gr~l~V 204 (473)
...++||||.|...-.|+++..+|..||.|.+|.++.... |.+||||||.|.+..+|+.||..|+|.. +- ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3578999999999999999999999999999999998775 8999999999999999999999999964 33 357899
Q ss_pred eeecC
Q 011980 205 DVERG 209 (473)
Q Consensus 205 ~~a~~ 209 (473)
+|+..
T Consensus 96 K~ADT 100 (371)
T KOG0146|consen 96 KFADT 100 (371)
T ss_pred Eeccc
Confidence 99764
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.74 E-value=2.9e-08 Score=95.70 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=73.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCcc--------EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--------~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
...+.|||.|||..||.+++.++|++||-|. .|+|..+.. |+.+|-|+|.|...+++..||+.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999774 367777765 9999999999999999999999999999999
Q ss_pred EEEEEeeecCC
Q 011980 200 RRVLVDVERGR 210 (473)
Q Consensus 200 r~l~V~~a~~~ 210 (473)
+.|.|+.|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988743
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.9e-08 Score=101.88 Aligned_cols=74 Identities=23% Similarity=0.446 Sum_probs=69.8
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
..|||| +.+|+.+|.++|+.+|+|..|.|+.+. | +.|||||.|.++.+|++||..||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 369999 899999999999999999999999998 6 9999999999999999999999999999999999998753
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=2.5e-08 Score=92.29 Aligned_cols=78 Identities=21% Similarity=0.488 Sum_probs=73.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....||.|.|..+++++.|...|.+|-.....+++.++-||+++||+||.|.+..++..|+..|+|..++.+.|.+.-
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999987653
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=93.45 Aligned_cols=71 Identities=32% Similarity=0.703 Sum_probs=65.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
..||||+||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..||..||+..|+|-.|.|+|+.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 369999999999999999999999999998775 37999999999999999999999999999999999875
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=7.4e-08 Score=90.96 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=73.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
-..+|+|.||++.|++++|+++|..||.++.+.|..+. +|.+.|.|-|.|...++|.+|++.+||+.|+|..|.|.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999888887 49999999999999999999999999999999999998765
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=1.8e-08 Score=103.67 Aligned_cols=93 Identities=27% Similarity=0.423 Sum_probs=83.1
Q ss_pred cCCCCCCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 117 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
+.............+.|||++||..+++.++.+++..||.+..+.++.+..+|.++||||.+|.+......|+..|||..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 33333334445567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEeeecC
Q 011980 197 LDGRRVLVDVERG 209 (473)
Q Consensus 197 i~gr~l~V~~a~~ 209 (473)
++++.|.|+.|..
T Consensus 356 lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 356 LGDKKLVVQRAIV 368 (500)
T ss_pred hcCceeEeehhhc
Confidence 9999999998764
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=1e-07 Score=97.32 Aligned_cols=75 Identities=29% Similarity=0.498 Sum_probs=66.9
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
....-+..+|+|-|||..|++++|..+|+.||+|..|.. |-...|.+||+|.+..+|+.|+++|++..|.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 334456789999999999999999999999999999755 345579999999999999999999999999999988
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.58 E-value=4.6e-07 Score=82.50 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=67.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecc-cCCCCCCceeEEEEeechHHHHHHHHHcCCceeC---CEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVT-DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRV 202 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~-d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~---gr~l 202 (473)
.+..+||||.+||.+|..-+|..+|..|--...+.|.. .+.....+-+|||+|.+...|.+|+..|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34578999999999999999999999885444443332 1211224579999999999999999999999985 7899
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
+|++++..+
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999998643
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=1.5e-07 Score=98.08 Aligned_cols=82 Identities=20% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCC---CCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~---tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
+.+++|||+||++.++++.|...|+.||+|..|+|++... ......|+||.|-+..+|++|++.|+|..|.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 3477899999999999999999999999999999988642 2334679999999999999999999999999999999
Q ss_pred eeecC
Q 011980 205 DVERG 209 (473)
Q Consensus 205 ~~a~~ 209 (473)
-|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99854
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.50 E-value=6.4e-07 Score=72.74 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=69.0
Q ss_pred cEEEEccCCCCCCHHHHHHHHhc--CCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC----CEEEEE
Q 011980 131 KTLFVARLSYETTESKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD----GRRVLV 204 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~--~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~----gr~l~V 204 (473)
+||.|.|||...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 377888899999989999999999999999999999999998874 566777
Q ss_pred eeec
Q 011980 205 DVER 208 (473)
Q Consensus 205 ~~a~ 208 (473)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 89
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.48 E-value=8e-07 Score=72.23 Aligned_cols=84 Identities=49% Similarity=0.794 Sum_probs=65.5
Q ss_pred CCCCChhhhcccCCCCCCCCCCCCC----CCCCCCCCChHHHHhhcCCCCCCC-CC---CchhHHHHhhHHHHhhhHHHH
Q 011980 39 PTGLTANLLKLFEPRAPLEYKPPPE----KRKCPPLTGMAQFVSHFAEPGDPL-YA---PPVERRARIHKLRLEKGAEKA 110 (473)
Q Consensus 39 ~~~~pp~l~~lf~p~pP~~~~pp~~----~~~~~~~~~~~~~~~~f~~~~~~~-~~---~~~~~~~r~~~~~~~~~~~~~ 110 (473)
...|||+|++||+|.||+++++|+. ...+.+++||.+|+..|....+.. +. ...+...+..........+.+
T Consensus 2 t~~lPp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~itGvs~~l~~~~~~~~~~~~~~~et~~e~~~r~~~ek~~~~~~~l 81 (94)
T PF12220_consen 2 TSKLPPNLLALFAPRPPLPYLPPIDYPPEKRKTPPITGVSQYLSEFEDYKDEPPPEPTETKEERRERKRKEKKEKNEEKL 81 (94)
T ss_pred cCcCCHHHHHHcCCCCCCCCCCccccCcccccCCCCCcHHHHHHHHhccccCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999954 455667999999999998776432 23 334556666677777888889
Q ss_pred HHHHhhcCCCCC
Q 011980 111 AEELKKYDPHND 122 (473)
Q Consensus 111 ~~~~~~~~~~~~ 122 (473)
...+..|+|..+
T Consensus 82 ~~~l~~w~P~~D 93 (94)
T PF12220_consen 82 EEELKEWDPHED 93 (94)
T ss_pred HHHHHhcCCCCC
Confidence 999999998764
No 90
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.40 E-value=3.8e-07 Score=93.53 Aligned_cols=77 Identities=14% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHh-cCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee---CCEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---DGRRV 202 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i---~gr~l 202 (473)
..+++.|||.||-.-+|.-+|+.+++ .+|.|..++| .+.+..|||.|.+.+.|.+.+.+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 44688999999999999999999998 5777777633 33478999999999999999999999876 78899
Q ss_pred EEeeecC
Q 011980 203 LVDVERG 209 (473)
Q Consensus 203 ~V~~a~~ 209 (473)
.|.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999765
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=5.6e-07 Score=87.70 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=75.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCcc--------EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 200 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--------~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr 200 (473)
...+|||-+|+..+++++|..+|.+||.|. .|.|..++.|+.+|+-|.|+|.+...|++||..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999874 367888899999999999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q 011980 201 RVLVDVERGRT 211 (473)
Q Consensus 201 ~l~V~~a~~~~ 211 (473)
.|+|.++..++
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998877654
No 92
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.13 E-value=2e-06 Score=82.99 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCC--CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...++|||||-|++|+++|.+.+...| .|..+++..+..+|+++|||+|...+..++++.++.|-..+|.|+.-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 456899999999999999999998877 67778888999999999999999999999999999999999999876654
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.06 E-value=1.8e-05 Score=78.18 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=69.4
Q ss_pred CcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 130 YKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 130 ~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.|.|.||.. .||.+.|..+|+-||.|..|+|+.++ +-.|+|+|.+...|+-|+..|+|+.|.|+.|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999866 48999999999999999999999865 3689999999999999999999999999999999987
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.05 E-value=2e-06 Score=87.97 Aligned_cols=80 Identities=21% Similarity=0.487 Sum_probs=74.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
...|||+--|...++.-+|.+||+.+|+|..|.|+.|..++.++|.|||+|.+.+.+..|| .|.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 3678888888889999999999999999999999999999999999999999999999999 699999999999998755
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=4.3e-06 Score=81.81 Aligned_cols=83 Identities=30% Similarity=0.579 Sum_probs=74.9
Q ss_pred CCCcEEE-EccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLF-VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~-V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.+..+|| |+||+..++.++|..+|..+|.|..+.+..+..++.++|||||.|.+...+..|+.. +...|.+..|.|+.
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455566 999999999999999999999999999999999999999999999999999999876 78889999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
..+..
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 87654
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=1.8e-05 Score=61.42 Aligned_cols=68 Identities=19% Similarity=0.341 Sum_probs=47.9
Q ss_pred cEEEEccCCCCCCHHH----HHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 131 KTLFVARLSYETTESK----IKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~----L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
..|||.|||.+..... |..++..|| +|..| ..+.|+|-|.+++.|..|++.|+|-.+-|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 456777886 66555 13689999999999999999999999999999999
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.99 E-value=2.2e-05 Score=79.52 Aligned_cols=77 Identities=23% Similarity=0.392 Sum_probs=64.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
....|-+.+|||.+|+++|..||+.|+ |..+.+.+ .+|++.|-|||+|.+++++++||+ .+-..+..+-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 445677789999999999999999996 66666655 469999999999999999999997 57777888888887664
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 85 ~ 85 (510)
T KOG4211|consen 85 G 85 (510)
T ss_pred C
Confidence 4
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.95 E-value=7.9e-06 Score=74.59 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=54.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
.+.||||.||.+++|+++|+.+|+.|--..-++|-. ....++|||+|++.+.|..|+..|+|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 467899999999999999999999997666565542 12246999999999999999999998776
No 99
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.93 E-value=7.6e-05 Score=72.46 Aligned_cols=96 Identities=19% Similarity=0.432 Sum_probs=71.1
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcEEEEccCCC----CCC-------HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEE
Q 011980 110 AAEELKKYDPHNDPNVSGDPYKTLFVARLSY----ETT-------ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIE 178 (473)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~----~~t-------e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVe 178 (473)
+...+..|.|........-..++|.|.||=. ..+ .++|.+.+.+||.|..|.|.- .++.|.+-|.
T Consensus 245 ~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~ 320 (382)
T KOG1548|consen 245 QQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVS 320 (382)
T ss_pred HHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEE
Confidence 3334444555443333344578899998621 223 355677789999999997753 4578999999
Q ss_pred eechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 179 YMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 179 f~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
|.+.+.|..||+.|+|.+|+|++|...+.-+
T Consensus 321 f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 321 FRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred eCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 9999999999999999999999999887543
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=1.6e-05 Score=73.68 Aligned_cols=68 Identities=34% Similarity=0.551 Sum_probs=60.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
..+.|+|.||+..+.+.+|..+|.++|.+....+ ..+++||+|.+.++|..||..|+|..|.++.|.|
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4567889999999999999999999999954433 3479999999999999999999999999999999
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.84 E-value=5.5e-05 Score=69.66 Aligned_cols=77 Identities=23% Similarity=0.487 Sum_probs=67.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CEEEEEe
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr~l~V~ 205 (473)
..|..+||+.|||..++.+.|..+|.+|.-...|.++... .+.|||+|.+...|..|...|+|..|- ...|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5578899999999999999999999999999999887643 479999999999999999999998875 7778887
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=2.3e-05 Score=65.04 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=44.4
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC-----ceeCCEEEEEe
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG-----RKLDGRRVLVD 205 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g-----~~i~gr~l~V~ 205 (473)
+.|+|.+++..++.++|+.+|..||.|.+|.+.... ..|||-|.+.+.|+.|+..+.- ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 579999999999999999999999999999886532 4899999999999999887633 35666666655
Q ss_pred e
Q 011980 206 V 206 (473)
Q Consensus 206 ~ 206 (473)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.80 E-value=0.00012 Score=70.71 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEccCCCCCCHHHH------HHHHhcCCCccEEEecccCC-CCCCceeE--EEEeechHHHHHHHHHcCCc
Q 011980 125 VSGDPYKTLFVARLSYETTESKI------KREFESYGPIKRVRLVTDKE-TNKPRGYA--FIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~te~~L------~~~F~~~G~v~~v~i~~d~~-tg~~kg~a--fVef~~~~~a~~Al~~l~g~ 195 (473)
+-....+-|||-+|++.+..+++ .++|++||+|..|.|..... .....+.+ ||+|.+.++|..||..++|.
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 33445667999999998877662 58999999999886654321 11122333 99999999999999999999
Q ss_pred eeCCEEEEEeeecC
Q 011980 196 KLDGRRVLVDVERG 209 (473)
Q Consensus 196 ~i~gr~l~V~~a~~ 209 (473)
.++|+.|+..|...
T Consensus 189 ~~DGr~lkatYGTT 202 (480)
T COG5175 189 LLDGRVLKATYGTT 202 (480)
T ss_pred cccCceEeeecCch
Confidence 99999999988654
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.78 E-value=5.1e-05 Score=76.91 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccE-EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
...+|-+.+||+.||+++|.+||+-.-.|.. |.++.+.. +.+.|-|||+|++++.|++||.. |...|+-+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 5567889999999999999999998765554 55666654 77899999999999999999974 667788888888653
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=8.8e-05 Score=76.14 Aligned_cols=77 Identities=26% Similarity=0.410 Sum_probs=63.0
Q ss_pred CCCcEEEEccCCCCCC------HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CE
Q 011980 128 DPYKTLFVARLSYETT------ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GR 200 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~t------e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr 200 (473)
.-...|+|.|+|..-. ...|..+|+++|+|+.+.++.+..+ ..+||.|++|.+..+|+.|++.|||+.|+ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3567899999986422 2346789999999999999988874 49999999999999999999999999886 44
Q ss_pred EEEEe
Q 011980 201 RVLVD 205 (473)
Q Consensus 201 ~l~V~ 205 (473)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55554
No 106
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.59 E-value=5.4e-05 Score=75.39 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=58.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEeccc---CCC--CC--------CceeEEEEeechHHHHHHHHHcC
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTD---KET--NK--------PRGYAFIEYMHTRDMKAAYKQAD 193 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d---~~t--g~--------~kg~afVef~~~~~a~~Al~~l~ 193 (473)
.-+..+|.+.|||..-.-+.|.+||+.||.|+.|.|+.. ... +. .+-+|||+|...+.|.+|.++||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 448999999999999888999999999999999999875 221 11 25689999999999999999886
Q ss_pred Cce
Q 011980 194 GRK 196 (473)
Q Consensus 194 g~~ 196 (473)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00026 Score=72.38 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=62.8
Q ss_pred CCCCCCCCcEEEEccCCCCCCHHHHHHHHh-cCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHH
Q 011980 123 PNVSGDPYKTLFVARLSYETTESKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 123 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~ 191 (473)
.+...+|.+|||||+||--++.++|..||. -||.|..+.|-.|+.-..++|-|=|+|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345567899999999999999999999998 799999999999977789999999999999999999975
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.50 E-value=0.00035 Score=68.47 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 127 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
..+++.+.|-+|... ++-+.|..+|..||.|..|+++..+ .|-|.|++.+..+++.||..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 446889999999764 6778899999999999999999765 3789999999999999999999999999999999
Q ss_pred eecCCCC
Q 011980 206 VERGRTV 212 (473)
Q Consensus 206 ~a~~~~~ 212 (473)
+++...+
T Consensus 359 ~SkQ~~v 365 (494)
T KOG1456|consen 359 VSKQNFV 365 (494)
T ss_pred ecccccc
Confidence 9987544
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.48 E-value=4.9e-05 Score=71.17 Aligned_cols=63 Identities=19% Similarity=0.430 Sum_probs=53.3
Q ss_pred HHHHHHHh-cCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 145 SKIKREFE-SYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 145 ~~L~~~F~-~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
++|...|+ +||+|..+.|..+. .-+..|.+||.|...++|++|++.|||-+|+|++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 89999999776654 36678999999999999999999999999999999999974
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.47 E-value=0.00012 Score=79.10 Aligned_cols=78 Identities=29% Similarity=0.489 Sum_probs=68.1
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC--EEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVL 203 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g--r~l~ 203 (473)
...+++.|||++|.+|+....|..+|..||.|..|.+-. ...||||.|++...+++|+..|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678899999999999999999999999999887743 34599999999999999999999999986 5788
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|.|+..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 988764
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.0025 Score=56.89 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=56.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
...|.|.+||+..++++|+.++.+.|.|+...+..| |++.|+|...++++.||..|....+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 456999999999999999999999999999988775 58999999999999999999887653
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.28 E-value=0.0005 Score=68.25 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCc-cEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE-EEEEe
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-RVLVD 205 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v-~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr-~l~V~ 205 (473)
+|+.+|++.|||+.+++++|+.+|...|-. +..++. ++.+-+|++.+.+.+.|..|+..|+++.+++. .|.|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 467899999999999999999999988755 444332 34456999999999999999999999998765 89999
Q ss_pred eecC
Q 011980 206 VERG 209 (473)
Q Consensus 206 ~a~~ 209 (473)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9875
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.25 E-value=0.00098 Score=65.45 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=63.2
Q ss_pred CCcEEEEccCCC--CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee--CCEEEEE
Q 011980 129 PYKTLFVARLSY--ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL--DGRRVLV 204 (473)
Q Consensus 129 ~~~~l~V~nL~~--~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i--~gr~l~V 204 (473)
+...|.+.-|++ .||.+-|..++..+|+|..|.|+.. +--.|.|||++.+.|++|..+|||..| +-..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 455666665544 5899999999999999999988753 235799999999999999999999876 4468999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
+||++.
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 999874
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.25 E-value=0.00026 Score=66.26 Aligned_cols=73 Identities=12% Similarity=0.317 Sum_probs=61.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCC--------CCCce----eEEEEeechHHHHHHHHHcCCce
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET--------NKPRG----YAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~t--------g~~kg----~afVef~~~~~a~~Al~~l~g~~ 196 (473)
..-.||+++||+.+...-|.++|+.||.|-.|.|.....+ |.+.. -|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999988765544 33332 36799999999999999999999
Q ss_pred eCCEE
Q 011980 197 LDGRR 201 (473)
Q Consensus 197 i~gr~ 201 (473)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.25 E-value=0.0017 Score=56.36 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=53.3
Q ss_pred CCCCcEEEEccCCC------CCCH---HHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 127 GDPYKTLFVARLSY------ETTE---SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 127 ~~~~~~l~V~nL~~------~~te---~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
++|..||.|.-+.+ ...+ .+|.+.|..||+|.=|+++. +.-+|+|.+-.+|.+|+. |+|.+|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 44666777765551 2222 36778889999999888875 367999999999999996 899999
Q ss_pred CCEEEEEeeecC
Q 011980 198 DGRRVLVDVERG 209 (473)
Q Consensus 198 ~gr~l~V~~a~~ 209 (473)
+|+.|+|.+..+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998654
No 116
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.23 E-value=0.00068 Score=48.84 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=42.3
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHH
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 189 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al 189 (473)
+.|-|.++++... +.|..+|..||+|..+.+.. ...+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688999987755 55667999999999988752 2459999999999999985
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.0011 Score=69.02 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCccEEEecccCCC---CCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 146 KIKREFESYGPIKRVRLVTDKET---NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 146 ~L~~~F~~~G~v~~v~i~~d~~t---g~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+|...+++||.|..|.|...... .-..|..||+|.+.++|+.|++.|+|.+|+++.|...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 34556678999999999877222 234678999999999999999999999999999988774
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.001 Score=68.09 Aligned_cols=63 Identities=24% Similarity=0.541 Sum_probs=48.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCC---CCCCce---eEEEEeechHHHHHHHHHc
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRG---YAFIEYMHTRDMKAAYKQA 192 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~---tg~~kg---~afVef~~~~~a~~Al~~l 192 (473)
-.++||||+||+.++|+.|...|..||.|. |.++.... --.++| |+|+.|+++..+..-|.++
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 478999999999999999999999999874 55552111 122456 9999999998887665543
No 119
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.06 E-value=0.00056 Score=71.88 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+..+|||+||...+..+.+..++..||.|..|..+. |||+.|..+..+..|+..|+-..++|+.|.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 566899999999999999999999999998876653 9999999999999999999999999998887763
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.03 E-value=0.0019 Score=68.07 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=64.7
Q ss_pred CCc-EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYK-TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~-~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
+++ .|-|.|+|+.++-++|.+||.-|-.+-.-.++.-...|++.|-|.|.|++.+.|..|+.-|++..|..+.|.|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 444 788889999999999999999997553332333334599999999999999999999999999999999988864
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.01 E-value=0.0027 Score=51.98 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=51.8
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccC-------CCCCCceeEEEEeechHHHHHHHHHcCCceeCCE-E
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-------ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-R 201 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~-------~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr-~ 201 (473)
.+.|.|-++|+. ....|..+|++||.|....-+... ..........|+|.++.+|.+||. -||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999987 567789999999999776411100 001234689999999999999996 699999885 4
Q ss_pred EEEeeec
Q 011980 202 VLVDVER 208 (473)
Q Consensus 202 l~V~~a~ 208 (473)
|-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.87 E-value=0.0025 Score=60.74 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCccEEEecccCCCCCC-ceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 145 SKIKREFESYGPIKRVRLVTDKETNKP-RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 145 ~~L~~~F~~~G~v~~v~i~~d~~tg~~-kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.++.+.+++||+|..|.|...+..... ---.||+|...++|.+|+-.|||..|+|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 457788999999999888766422222 235799999999999999999999999999988764
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.74 E-value=0.0051 Score=60.74 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=65.9
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCC-ccE--EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGP-IKR--VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~--v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+|-+.+||+..+.++|..||..|.. |.. |.++.+.. |.+.|-|||+|.+.+.|.+|....+.+....+.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567899999999999999999999863 333 77777764 89999999999999999999998888877788888865
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 43
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.0021 Score=69.45 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
...|||.|+|+..|.++|..+|..+|.++.+.++..+. |+++|.|||.|.++.++..++..+....+.-..+.|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45799999999999999999999999999999888774 99999999999999999999988887777777777777655
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.45 E-value=0.0023 Score=63.81 Aligned_cols=72 Identities=26% Similarity=0.390 Sum_probs=57.6
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc-eeCCEEEEEeeec
Q 011980 131 KTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR-KLDGRRVLVDVER 208 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~-~i~gr~l~V~~a~ 208 (473)
++|||+||.+.++..+|..+|...- .+..-.++ ..||+||.+.+...|.+|++.|+|. ++.|+.+.|+++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4699999999999999999997641 11111122 2489999999999999999999995 5899999999866
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 75 ~ 75 (584)
T KOG2193|consen 75 P 75 (584)
T ss_pred h
Confidence 5
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.41 E-value=0.001 Score=72.02 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=67.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.|||+|||+..+++.+|...|..+|.|..|.|-.... +.-..||||.|.+..++..|+..|.+..|..-.+.+.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 478999999999999999999999999999998876543 5556799999999999999998898888766666666653
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.00034 Score=75.29 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=60.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
.+++||.||++.+.+.+|...|..+|.|..+.|.....++..+|+|||+|..++.+.+||....++.++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 467999999999999999999999998888888766778999999999999999999999755554444
No 128
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.28 E-value=0.015 Score=45.41 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 193 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~ 193 (473)
...+||+ +|..+...+|.++|+.||.| .|.++.+ .-|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4556666 99999999999999999988 4666655 379999999999999988765
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.27 E-value=0.0046 Score=62.73 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=57.1
Q ss_pred cEEEEccCCCCC-CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 131 KTLFVARLSYET-TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 131 ~~l~V~nL~~~~-te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
+.|-|.-+++.+ +.++|..+|.+||+|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|-|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344444455543 56889999999999999987543 3489999999999987874 799999999999999775
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.22 E-value=0.023 Score=42.05 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=45.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcC---CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc
Q 011980 130 YKTLFVARLSYETTESKIKREFESY---GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 192 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~---G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l 192 (473)
..+|+|.++. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999986 57889999999988 235688888774 5889999999999999765
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.98 E-value=0.0054 Score=59.97 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=63.7
Q ss_pred CCcEEEEccCCCCCCHHHHH---HHHhcCCCccEEEecccCC--CCC-CceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 129 PYKTLFVARLSYETTESKIK---REFESYGPIKRVRLVTDKE--TNK-PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v~i~~d~~--tg~-~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
..+-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+. ...-+||+|...++|..||..++|+.++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34668888898877665553 6899999999998877652 111 12348999999999999999999999999998
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
++.+.....
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 877765543
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.69 E-value=0.013 Score=55.13 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=62.1
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC----ceeCCEEEEEee
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG----RKLDGRRVLVDV 206 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g----~~i~gr~l~V~~ 206 (473)
..|||.||...++.+.|...|..||.|....++.|.. ++..+-++|+|...-.|.+|+..++- ..+.+.++-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6899999999999999999999999998877766653 88889999999999999999887632 234555555554
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.51 E-value=0.02 Score=59.28 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=54.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhc--CCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC--ceeCCEEEEEe
Q 011980 130 YKTLFVARLSYETTESKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVLVD 205 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~--~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g--~~i~gr~l~V~ 205 (473)
-|.|+|.-||..+-.++|+.||.. |-+++.|.+..+. -=||+|++..+|+.|++.|.. .+|.|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 566778899999999999999964 8888888886542 459999999999999987644 44667666443
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.12 E-value=0.018 Score=60.98 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccE-EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.+.+|||..||..+++..+..+|...-.|.+ |.|..-+ ++...+.|||+|..++++..|+..-+.+.++-+.|.|.-
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 4788999999999999999999998777777 5554443 578889999999999988888765566667778888864
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.04 E-value=0.046 Score=49.80 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=51.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhc-CCCc---cEEEecccCCC--CCCceeEEEEeechHHHHHHHHHcCCceeC---C
Q 011980 129 PYKTLFVARLSYETTESKIKREFES-YGPI---KRVRLVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGRKLD---G 199 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~-~G~v---~~v~i~~d~~t--g~~kg~afVef~~~~~a~~Al~~l~g~~i~---g 199 (473)
...+|.|.+||+.+|++++.+.+.. ++.. ..+.......+ ...-.-|||.|.+.+++...+..++|+.|- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999887776 5544 33321111111 112367899999999999999999998762 2
Q ss_pred --EEEEEeeecCCCC
Q 011980 200 --RRVLVDVERGRTV 212 (473)
Q Consensus 200 --r~l~V~~a~~~~~ 212 (473)
....|++|--...
T Consensus 86 ~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 86 NEYPAVVEFAPYQKV 100 (176)
T ss_dssp -EEEEEEEE-SS---
T ss_pred CCcceeEEEcchhcc
Confidence 3567777765443
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.93 E-value=0.12 Score=44.64 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=54.9
Q ss_pred CCCCCCcEEEEccCCCCCC----HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE
Q 011980 125 VSGDPYKTLFVARLSYETT----ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 200 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~t----e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr 200 (473)
...+|-.||.|.=|..++. -..|...++.||+|..|.+.. +.-|.|.|.+..+|=.|+.+++. ..-|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 3456777888876555443 334566678899999997753 34799999999999999988765 45666
Q ss_pred EEEEeee
Q 011980 201 RVLVDVE 207 (473)
Q Consensus 201 ~l~V~~a 207 (473)
.+.+.|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 7777664
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.72 E-value=0.08 Score=52.57 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=53.1
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcC----CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 131 KTLFVARLSYETTESKIKREFESY----GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~----G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
-.|-+.+||+.+++.++.+||..- |-+..|.++... .|+..|-|||.|..+++|+.||.. |-..|+-+.|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 345557899999999999999732 244556666544 488999999999999999999964 444455554443
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.044 Score=56.96 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=64.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhc-CCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee---C-CEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---D-GRRV 202 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~-~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i---~-gr~l 202 (473)
.+-+++.|.|++...|..+|.+..++ .|.-..+.++.|-.+..+.|||||-|.+++++..+++++||+.+ + .+.+
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia 465 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIA 465 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeee
Confidence 35678889999988888887766543 57777888888887788889999999999999999999999764 3 3455
Q ss_pred EEeeec
Q 011980 203 LVDVER 208 (473)
Q Consensus 203 ~V~~a~ 208 (473)
.|.||+
T Consensus 466 ~itYAr 471 (549)
T KOG4660|consen 466 SITYAR 471 (549)
T ss_pred eeehhh
Confidence 666654
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.79 E-value=0.49 Score=39.53 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=47.9
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
...+.+...|..++.+.|..+.+.+- .|..++|+.+. ..++-.+++.|.++..|...+..+||..|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444555556666665555553 56678888764 2355678999999999999999999988753
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.60 E-value=0.22 Score=48.08 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE-EEEee
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR-VLVDV 206 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~-l~V~~ 206 (473)
.=|-|-++++. .-..|..+|++||+|+.... +..-.+-+|-|.+..+|.+||. -||..|+|.. |-|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 34556677765 44678899999999977643 3334699999999999999996 6999998754 34444
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.27 E-value=0.34 Score=37.30 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=39.2
Q ss_pred EEEEc-cCCCCCCHHHHHHHHhcCC-----CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 132 TLFVA-RLSYETTESKIKREFESYG-----PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 132 ~l~V~-nL~~~~te~~L~~~F~~~G-----~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
+|||. +--..++..+|..+|...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 2233578888998887764 345666653 489999865 47889999999999999999998
Q ss_pred ee
Q 011980 206 VE 207 (473)
Q Consensus 206 ~a 207 (473)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.14 E-value=0.33 Score=44.46 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=45.8
Q ss_pred CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC--CceeCCEEEEEeeecCC
Q 011980 143 TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVLVDVERGR 210 (473)
Q Consensus 143 te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~--g~~i~gr~l~V~~a~~~ 210 (473)
....|..+|..|+.+..+.++.. -+=..|.|.+.+.|..|...|+ +..|.|..|.|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988876542 3468999999999999999999 99999999999998543
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.59 E-value=0.087 Score=51.79 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++++++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999899999999988888777766678899999999999999999997544456666666655554
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.51 Score=49.56 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=61.3
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHHhcC----CCccEEEecccC----------CCCC---------------------
Q 011980 127 GDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRVRLVTDK----------ETNK--------------------- 170 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~v~~v~i~~d~----------~tg~--------------------- 170 (473)
..+++.|-|+||.|. |...+|..+|..| |.|..|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999996 7788999999877 588888765421 1122
Q ss_pred ---------------C-ceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 171 ---------------P-RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 171 ---------------~-kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
. .-||.|+|.+.+.|.+.+..++|..|..-.+.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 1 13799999999999999999999998765544443
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=1.2 Score=44.79 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCC-ccEEEecccCCCCCCceeEEEEeechHHHHHHHHH
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGP-IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~ 191 (473)
-...|=|.++|.....++|...|+.|+. -..|.|+-+. +||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4678999999999999999999999973 4567777653 899999999999999963
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.68 E-value=0.26 Score=53.77 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=62.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee--CCEEEEEeeec
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL--DGRRVLVDVER 208 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i--~gr~l~V~~a~ 208 (473)
.+.++.|.+-..+...|..+|..||.|..++.+.+- ..|.|+|...+.|..|+.+|+|..+ -|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 356677777788899999999999999999887653 4899999999999999999999764 67788888887
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.12 E-value=0.75 Score=46.96 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=57.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCc-eeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPR-GYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~k-g~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
++.|+|-.+|..+|-.+|..|+..|- .|..|.|+.+ |.+. -.++|.|.+.++|...++.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998764 7889999986 3333 457899999999999999999988753
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=89.25 E-value=0.059 Score=49.67 Aligned_cols=69 Identities=28% Similarity=0.406 Sum_probs=57.6
Q ss_pred CCcEEEEcc----CCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 129 PYKTLFVAR----LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 129 ~~~~l~V~n----L~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
...+++.|+ |...++++.+...|+..|.|..+.+..+.. |.+..++||++.-..+.-.|+....+..+-
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 345788888 788899999999999999999999988775 888999999999888888888776665543
No 149
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=86.15 E-value=8.5 Score=42.45 Aligned_cols=12 Identities=8% Similarity=0.410 Sum_probs=5.0
Q ss_pred cCCCCCCHHHHH
Q 011980 137 RLSYETTESKIK 148 (473)
Q Consensus 137 nL~~~~te~~L~ 148 (473)
++|+.++...|+
T Consensus 194 smpfkwnaqriq 205 (1194)
T KOG4246|consen 194 SMPFKWNAQRIQ 205 (1194)
T ss_pred CCCccccHHHHH
Confidence 344444444333
No 150
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.15 E-value=0.84 Score=44.68 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=7.8
Q ss_pred CCHHHHHHHHhcC
Q 011980 142 TTESKIKREFESY 154 (473)
Q Consensus 142 ~te~~L~~~F~~~ 154 (473)
....+|+.+|+.|
T Consensus 169 qpp~dLw~WyEpy 181 (453)
T KOG2888|consen 169 QPPADLWDWYEPY 181 (453)
T ss_pred CChhHHHHHhhhh
Confidence 3445666666666
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.29 E-value=5.3 Score=30.03 Aligned_cols=56 Identities=18% Similarity=0.423 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 141 ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 141 ~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
.++-++|+..|..|+-. .|..++. || ||.|.+..+|+.|+...+|..+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 46788999999999732 3334432 33 899999999999999999999888777653
No 152
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=83.05 E-value=13 Score=41.01 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHhcCCCcc-----EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 140 YETTESKIKREFESYGPIK-----RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 140 ~~~te~~L~~~F~~~G~v~-----~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
..++...|..++..-+.|. .|.|. ..|.||+... ..|...+..|++..+.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 3578888888887665443 34443 2489999864 558888889999999999999998753
No 153
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=82.13 E-value=1.4 Score=43.23 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=6.8
Q ss_pred ceeEEEEeech
Q 011980 172 RGYAFIEYMHT 182 (473)
Q Consensus 172 kg~afVef~~~ 182 (473)
.||-||-|..+
T Consensus 160 lGFmYiRYtqp 170 (453)
T KOG2888|consen 160 LGFMYIRYTQP 170 (453)
T ss_pred heeeEEeecCC
Confidence 46677777544
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=81.24 E-value=0.093 Score=52.75 Aligned_cols=75 Identities=11% Similarity=0.240 Sum_probs=62.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.++|-|.|+|+...++.|-.++..||.|..|..+.. ..-....-|+|...+.+..||..|+|..|....++|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 566889999999999999999999999998876431 222235567899999999999999999999999988874
No 155
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=76.99 E-value=4.3 Score=30.66 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=44.9
Q ss_pred HHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 145 SKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 145 ~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
++|.+.|...| .|..|..+....+..+...-||+......... .|+=..|+|+.|.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46888898888 77888888877777777888888876654443 35556789999888854
No 156
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.11 E-value=2.8 Score=37.82 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=54.5
Q ss_pred CCCcEEEEccCCCCCCH-----HHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE-E
Q 011980 128 DPYKTLFVARLSYETTE-----SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-R 201 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te-----~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr-~ 201 (473)
+-.++|++++|+..+-. .....+|-+|-+..-+.++. +.++.-|.|.+++.|..|...+++..|.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34567889998776432 23455666666555444443 345777899999999999999999999988 7
Q ss_pred EEEeeecC
Q 011980 202 VLVDVERG 209 (473)
Q Consensus 202 l~V~~a~~ 209 (473)
|..-++..
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 88877764
No 157
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=74.25 E-value=13 Score=37.69 Aligned_cols=74 Identities=22% Similarity=0.441 Sum_probs=54.0
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHHhcC----CCccEEEecccCC----------------------------------
Q 011980 127 GDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRVRLVTDKE---------------------------------- 167 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~v~~v~i~~d~~---------------------------------- 167 (473)
+.++..|-|-||.|. +...+|..+|+.| |+|..|.|.....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 567889999999996 7778899999876 5777665532100
Q ss_pred ------CCC------C-------------------ceeEEEEeechHHHHHHHHHcCCceeCCE
Q 011980 168 ------TNK------P-------------------RGYAFIEYMHTRDMKAAYKQADGRKLDGR 200 (473)
Q Consensus 168 ------tg~------~-------------------kg~afVef~~~~~a~~Al~~l~g~~i~gr 200 (473)
.|. - .-||.|+|.+...+...+.+++|..+...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 000 0 12789999999999999999999887643
No 158
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=73.43 E-value=36 Score=33.32 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHhhcCCCCCC-----CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCC
Q 011980 104 EKGAEKAAEELKKYDPHNDP-----NVSGDPYKTLFVARLSYETTESKIKREFESYG 155 (473)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G 155 (473)
.....++...+..|.+.... +++..+--.-||- -..+-++...|...+
T Consensus 112 dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIe----ye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 112 DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIE----YEHERDMKAAYKDAD 164 (335)
T ss_pred cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEE----eccHHHHHHHHHhcc
Confidence 44456677777777764311 1222233333442 235667777777654
No 159
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.00 E-value=8.4 Score=29.14 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=44.6
Q ss_pred HHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 145 SKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 145 ~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
++|.+.|...| +|..|.-+....+..+....||++....+... .++=..|++..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46788888888 67777777776667777888999886655333 345567899998888654
No 160
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.94 E-value=16 Score=35.37 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=41.5
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCc-cEEEecccCCCCCCceeEEEEeech-------HHHHHHHHHcC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHT-------RDMKAAYKQAD 193 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v-~~v~i~~d~~tg~~kg~afVef~~~-------~~a~~Al~~l~ 193 (473)
..-|||+||+..+.-.+|+..+.+.|.+ ..|.|. .+.|-||+-|.+. .++.+++..+|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4569999999999999999999887743 444442 2357899999754 44555555443
No 161
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=69.27 E-value=2.9 Score=39.78 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=48.5
Q ss_pred EEEEccCCCCCCHHH-H--HHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 132 TLFVARLSYETTESK-I--KREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 132 ~l~V~nL~~~~te~~-L--~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
.+|++++-..+..+- | ...|+.|-.+....++.+.. +...+++|+.|.......++-..-+++.++-..|++.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 355666555544443 2 56777777777777777654 7778999999987777777766556666666654443
No 162
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=64.62 E-value=0.79 Score=47.92 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 201 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~ 201 (473)
..|+|||.|++++++-++|..++..+--+..+.+.....-....-+++|+|.---.+..|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4688999999999999999999998866666655433222334467889999888888888888887664443
No 163
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.92 E-value=12 Score=31.62 Aligned_cols=56 Identities=18% Similarity=0.420 Sum_probs=29.9
Q ss_pred EEEEccCCCC---------CCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeech-HHHHHHHH
Q 011980 132 TLFVARLSYE---------TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT-RDMKAAYK 190 (473)
Q Consensus 132 ~l~V~nL~~~---------~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~-~~a~~Al~ 190 (473)
+++|-|++.. ++.+.|...|..|..++ +..+.+. ....|+++|+|..- .....|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 5667777543 35578999999998875 5555554 34578999999743 44445553
No 164
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=60.99 E-value=1.4e+02 Score=27.78 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=15.4
Q ss_pred EEeechHHHHHHHH--HcCCcee
Q 011980 177 IEYMHTRDMKAAYK--QADGRKL 197 (473)
Q Consensus 177 Vef~~~~~a~~Al~--~l~g~~i 197 (473)
-.=.+.++|..||. .|+|.+|
T Consensus 63 ~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 63 HDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eecchHHHHHHhhcceeecccee
Confidence 33447888888885 4789887
No 165
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.23 E-value=11 Score=38.18 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=49.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCC-ccEEEecccCCC--CCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGP-IKRVRLVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~~d~~t--g~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
-+.|.|.+||+..++.+|.+-+..|-. |....+...... ....+.|||.|..++++......++|++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457889999999999999988887653 333333321111 22357899999999999888888999875
No 166
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.41 E-value=13 Score=34.79 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=43.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHH
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 189 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al 189 (473)
......+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 335678999999999999999999999999977777665443334444444444444444443
No 167
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=56.61 E-value=1.5e+02 Score=33.24 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=7.7
Q ss_pred CCcEEEEccCCC
Q 011980 129 PYKTLFVARLSY 140 (473)
Q Consensus 129 ~~~~l~V~nL~~ 140 (473)
....+|+|++..
T Consensus 144 ~~qR~f~gvvtk 155 (1194)
T KOG4246|consen 144 EPQRRFAGVVTK 155 (1194)
T ss_pred Ccceeeehhhhh
Confidence 345688887644
No 168
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=54.17 E-value=22 Score=34.65 Aligned_cols=79 Identities=13% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccC-------CCCCCceeEEEEeechHHHHHHH----HHcCC--c
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-------ETNKPRGYAFIEYMHTRDMKAAY----KQADG--R 195 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~-------~tg~~kg~afVef~~~~~a~~Al----~~l~g--~ 195 (473)
.++.|.+.||...++-..+...|.+||+|..|.++.+. ...+....+.+.|-+.+.|...+ +.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999998765 11233467889999988887543 22322 2
Q ss_pred eeCCEEEEEeee
Q 011980 196 KLDGRRVLVDVE 207 (473)
Q Consensus 196 ~i~gr~l~V~~a 207 (473)
.|....|.|.|.
T Consensus 94 ~L~S~~L~lsFV 105 (309)
T PF10567_consen 94 KLKSESLTLSFV 105 (309)
T ss_pred hcCCcceeEEEE
Confidence 355666666654
No 169
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=51.36 E-value=11 Score=39.34 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=7.9
Q ss_pred hhhhcccCCCCCCCCCCC
Q 011980 44 ANLLKLFEPRAPLEYKPP 61 (473)
Q Consensus 44 p~l~~lf~p~pP~~~~pp 61 (473)
.|+..+|-...-+.++|+
T Consensus 71 ~n~idrFDvRAhLdhi~~ 88 (653)
T KOG2548|consen 71 TNQIDRFDVRAHLDHIPE 88 (653)
T ss_pred cchhhhhhhHhhhccCCc
Confidence 344455544333444443
No 170
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=50.25 E-value=1.3 Score=47.49 Aligned_cols=7 Identities=43% Similarity=0.240 Sum_probs=2.9
Q ss_pred cCchHHH
Q 011980 10 RNQNAAV 16 (473)
Q Consensus 10 ~~~~~~~ 16 (473)
+|+++|.
T Consensus 4 ~~~q~a~ 10 (668)
T KOG2253|consen 4 GNTQAAG 10 (668)
T ss_pred ccccCCC
Confidence 3444443
No 171
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=46.62 E-value=81 Score=25.54 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=35.5
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcC--------CCccEEEecccC-----CCCCCce-eEEEEeechHHHHHHHHH
Q 011980 131 KTLFVARLSYETTESKIKREFESY--------GPIKRVRLVTDK-----ETNKPRG-YAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~--------G~v~~v~i~~d~-----~tg~~kg-~afVef~~~~~a~~Al~~ 191 (473)
-++|| |.+.++++++..++..+ |+|..+.-+..+ ..+...| |.++.|....++.+.|+.
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 35677 56777777766554443 466665432211 2244556 678899877777777754
No 172
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=45.24 E-value=18 Score=39.47 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=7.1
Q ss_pred eCCEEEEEeee
Q 011980 197 LDGRRVLVDVE 207 (473)
Q Consensus 197 i~gr~l~V~~a 207 (473)
|+|.+|.++..
T Consensus 633 ldgipm~~e~~ 643 (877)
T KOG0151|consen 633 LDGIPMMVETK 643 (877)
T ss_pred ccCceeeeeec
Confidence 56777777653
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.93 E-value=38 Score=32.70 Aligned_cols=69 Identities=23% Similarity=0.535 Sum_probs=43.1
Q ss_pred CCCcEEEEccCCCC------------CCHHHHHHHHhcCCCccEEEecc-cC----CCCCC-----ceeEE---------
Q 011980 128 DPYKTLFVARLSYE------------TTESKIKREFESYGPIKRVRLVT-DK----ETNKP-----RGYAF--------- 176 (473)
Q Consensus 128 ~~~~~l~V~nL~~~------------~te~~L~~~F~~~G~v~~v~i~~-d~----~tg~~-----kg~af--------- 176 (473)
.-+-|||+.+||-. -++.-|...|+.||.|..|.|+. |+ .+|+. .||+|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34567888877642 35678999999999999988753 22 23443 33433
Q ss_pred EEeechHHHHHHHHHcCCce
Q 011980 177 IEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 177 Vef~~~~~a~~Al~~l~g~~ 196 (473)
|+|-.......|+.+|.|..
T Consensus 227 vqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHhHHHHHHHHhcch
Confidence 44444444556666666654
No 174
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=42.58 E-value=29 Score=32.74 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRV 160 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v 160 (473)
...+||+-|||..+|++.|..+.+++|-+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45689999999999999999999999966554
No 175
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=39.92 E-value=1.3e+02 Score=27.17 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCChHHHHhhcCCCCCCCCCCchhHH-HHhhHHHHhhhHHHHHHHHhhcCCCCCCCCCCCCCcEEEEccCCCC------
Q 011980 69 PLTGMAQFVSHFAEPGDPLYAPPVERR-ARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYE------ 141 (473)
Q Consensus 69 ~~~~~~~~~~~f~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~------ 141 (473)
..+.+++++..|..-.+..+.|..+-. -+..++...-....+......+.+...+...+.|...|||.||...
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 456677888888877776666554421 1111222222222222222334445556666778899999997542
Q ss_pred --------CCHHHHHHHHhcCCCc
Q 011980 142 --------TTESKIKREFESYGPI 157 (473)
Q Consensus 142 --------~te~~L~~~F~~~G~v 157 (473)
...+.+.++|++|+..
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~ 108 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKT 108 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCC
Confidence 2347789999999753
No 176
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.53 E-value=4.9 Score=41.04 Aligned_cols=78 Identities=5% Similarity=-0.159 Sum_probs=57.7
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
...|+..|+..+++.+|..+|.-||.|.-+.+......+.....+||...+ ..+..||..+.-..+.|-.+.|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 356778899999999999999999999877766554445566778887754 346667666655667777788777654
No 177
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.32 E-value=53 Score=26.09 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 180 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~ 180 (473)
+..-|||||++..+-+.-...+.+.++.-.-+-+..+ ....||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 3446999999988877666666665554433333332 226789998874
No 178
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=38.18 E-value=66 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCccEEEe
Q 011980 145 SKIKREFESYGPIKRVRL 162 (473)
Q Consensus 145 ~~L~~~F~~~G~v~~v~i 162 (473)
.+|+.+|+..|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999876554
No 179
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=37.61 E-value=33 Score=34.09 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=2.7
Q ss_pred CCCChh
Q 011980 40 TGLTAN 45 (473)
Q Consensus 40 ~~~pp~ 45 (473)
..||.+
T Consensus 37 L~L~q~ 42 (367)
T KOG0835|consen 37 LNLPQV 42 (367)
T ss_pred hcCcHH
Confidence 345543
No 180
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=37.57 E-value=47 Score=31.42 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=38.5
Q ss_pred CcEEEEccCCCCCC----HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEe-echHHHHHHHHHcCCceeCCEEEEE
Q 011980 130 YKTLFVARLSYETT----ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEY-MHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 130 ~~~l~V~nL~~~~t----e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef-~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...||||+|....- .++|...+-+.+ +.|+.-.......||+.-.. .+.++..++|+.+.+..+.-..+.|
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~----wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~ 112 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENS----WSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLV 112 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhcc----ceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEE
Confidence 56799999866432 234444443332 22222111223345553333 3667777888866665554444555
Q ss_pred eee
Q 011980 205 DVE 207 (473)
Q Consensus 205 ~~a 207 (473)
-.+
T Consensus 113 GhS 115 (299)
T KOG4840|consen 113 GHS 115 (299)
T ss_pred ecC
Confidence 443
No 181
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.95 E-value=20 Score=38.81 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=54.0
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
.+||+.|-...-+..-+..+|..++.++...++.....+...+-+|++|..+..+..|. .|.+..+....+.+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 37888776666667778888888888888877776666777789999999999887775 35666665554433
No 182
>PRK11901 hypothetical protein; Reviewed
Probab=34.71 E-value=2.6e+02 Score=27.98 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEE--EEeechHHHHHHHHHcCC
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAF--IEYMHTRDMKAAYKQADG 194 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~af--Vef~~~~~a~~Al~~l~g 194 (473)
...+|-|..+ ..++.|..|..+++ +..+.|......|+. -|.+ -.|.+.++|..||..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3456666554 35777888887775 344555544333443 3443 379999999999988754
No 183
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.82 E-value=85 Score=24.59 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=24.9
Q ss_pred CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 156 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 156 ~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
.|.++..+ ...+||-|||=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 35555443 4478999999999999999998776654
No 184
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.10 E-value=2.1e+02 Score=22.61 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=38.0
Q ss_pred EEccCCCCCCHHHHHHHHhc-CC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHH
Q 011980 134 FVARLSYETTESKIKREFES-YG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 134 ~V~nL~~~~te~~L~~~F~~-~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~ 191 (473)
|+-.++...+..+|...++. || +|..|..+.-+ ...-=|||.|.....|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 34446778999999999987 66 56666665433 1223699999888877766443
No 185
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=27.50 E-value=38 Score=35.65 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 011980 53 RAPLEYKPPPEKRKCPPL 70 (473)
Q Consensus 53 ~pP~~~~pp~~~~~~~~~ 70 (473)
.|++...++.....+...
T Consensus 86 i~~vd~t~~~p~tktee~ 103 (653)
T KOG2548|consen 86 IPEVDSTSVRPHTKTEEE 103 (653)
T ss_pred CCccCCCccCCCCCchhH
Confidence 344555544433333333
No 186
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=27.26 E-value=35 Score=33.80 Aligned_cols=7 Identities=57% Similarity=0.449 Sum_probs=3.1
Q ss_pred chhhhhH
Q 011980 25 RANVLQL 31 (473)
Q Consensus 25 ~~~~~~l 31 (473)
.+.|.+|
T Consensus 6 R~mLdqL 12 (319)
T KOG0796|consen 6 RAMLDQL 12 (319)
T ss_pred HHHHHHH
Confidence 3444444
No 187
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=27.10 E-value=1.8e+02 Score=23.16 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHH
Q 011980 144 ESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 144 e~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~ 191 (473)
.+.+.++++.+| +|..+.+.. |..-.++.+++.+.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHH
Confidence 355777787765 788777764 66667888899998887766533
No 188
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.83 E-value=1.4e+02 Score=27.16 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhcC-CCccEEEecccCCCC--CCceeEEEEeechHHHHHHHHH
Q 011980 142 TTESKIKREFESY-GPIKRVRLVTDKETN--KPRGYAFIEYMHTRDMKAAYKQ 191 (473)
Q Consensus 142 ~te~~L~~~F~~~-G~v~~v~i~~d~~tg--~~kg~afVef~~~~~a~~Al~~ 191 (473)
+|+++|..+..-. |++..|.+-.... + ..+|-.||+|.+.+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhh
Confidence 5666666555432 6888876654332 3 4678999999999999988764
No 189
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.62 E-value=90 Score=25.39 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=30.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeech
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT 182 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~ 182 (473)
...-||||+++..+-+.-...+-+.++.-.-+-+..+ ..-.||+|.++-..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 3446999999888776554455555554333323222 23349999988754
No 190
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=37 Score=34.63 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=46.9
Q ss_pred CcEEEEccCCCCCCH--------HHHHHHHhc--CCCccEEEecccCCCCCCceeEEEEeechHHHHHHH
Q 011980 130 YKTLFVARLSYETTE--------SKIKREFES--YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 189 (473)
Q Consensus 130 ~~~l~V~nL~~~~te--------~~L~~~F~~--~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al 189 (473)
.+.+|+.++....+. ++|..+|.. .+.+..|.+-.+.....+.|-.|++|.....|++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 345667666555443 488899988 678888888887766778899999999999999887
No 191
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=26.07 E-value=12 Score=35.27 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCCChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCC
Q 011980 69 PLTGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDP 119 (473)
Q Consensus 69 ~~~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 119 (473)
...+|..+|+.|+++.+..+. +..+..+++.+|+++...+.+..+.+...|
T Consensus 25 ~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p 76 (247)
T KOG0149|consen 25 HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP 76 (247)
T ss_pred chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC
Confidence 456799999999998876655 677999999999999998887776665444
No 192
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=1.8e+02 Score=23.94 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHH
Q 011980 145 SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 189 (473)
Q Consensus 145 ~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al 189 (473)
.+|..++..+| |.+-.|..+. ..+.-|||++|.+.+..-++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde--~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDE--EENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecC--CcccEEEEEEEcChHHHHHHH
Confidence 45778888888 4455555543 234569999999666555554
No 193
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=25.85 E-value=71 Score=35.38 Aligned_cols=13 Identities=23% Similarity=0.112 Sum_probs=5.9
Q ss_pred CcccccCchHHHH
Q 011980 5 NDAFMRNQNAAVQ 17 (473)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (473)
.+++++.+.+++.
T Consensus 254 ~~~~~~~~~la~g 266 (830)
T KOG1923|consen 254 KGQGIRAQILALG 266 (830)
T ss_pred cCCCCccchhhhh
Confidence 3444444444443
No 194
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=25.81 E-value=2.7e+02 Score=30.31 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCCcEEEEccCCCCCCHH-HHHHHHhcCCCccEEEecccCCCCCCceeEEEEee-----chHHHHHHHHHc
Q 011980 127 GDPYKTLFVARLSYETTES-KIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM-----HTRDMKAAYKQA 192 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~-~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~-----~~~~a~~Al~~l 192 (473)
.-|.+.|..+++.+-..+. ++..-+...|.++.+.|+.+- -++|+.|. ..+.++.||+.|
T Consensus 786 qLPp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~l------PHGFLnft~ls~E~~~~~~~CI~rl 851 (880)
T KOG4388|consen 786 QLPPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDL------PHGFLNFTALSRETRQAAELCIERL 851 (880)
T ss_pred cCCCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcC------CccceeHHhhCHHHHHHHHHHHHHH
Confidence 4467788888888876665 345566778999999988753 36677774 456677777655
No 195
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=25.60 E-value=33 Score=34.38 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc
Q 011980 144 ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 144 e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~ 195 (473)
...|.+++.+.|.|..-.+.. --+.|.+||.+-.++++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~r----tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYR----TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHH----HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888889999886655543 224689999999999999999998764
No 196
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.46 E-value=35 Score=24.71 Aligned_cols=38 Identities=26% Similarity=0.561 Sum_probs=19.2
Q ss_pred CCceeEEEEeec-hHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 170 KPRGYAFIEYMH-TRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 170 ~~kg~afVef~~-~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..+|||||...+ ..+.--+-..|++. ++|-.+.|.+..
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 357999999887 33332233345544 455566666544
No 197
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.33 E-value=2.4e+02 Score=19.96 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeech----HHHHHHHHH
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHT----RDMKAAYKQ 191 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~----~~a~~Al~~ 191 (473)
||.|.||.-......|...+...-.|..+.+-.. .+-+-|.|... +.+.++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888776677889999998877888877442 35777888644 455566654
No 198
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.22 E-value=84 Score=36.60 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEeccc
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTD 165 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d 165 (473)
..++++|--+-..+..+.|..+.+.|+....+....|
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 3456777777777888899999888887666554444
No 199
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=22.30 E-value=2.3e+02 Score=22.81 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHhcCCCc-cEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC
Q 011980 138 LSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 193 (473)
Q Consensus 138 L~~~~te~~L~~~F~~~G~v-~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~ 193 (473)
+.+.++...|..-|---|.- +-..+-.| .=+.+|.|.|.+.+.+..|++.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHH
Confidence 45567777777666555521 11111111 124699999999999999988763
No 200
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.63 E-value=66 Score=25.63 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhc-CCCccEEEecccCCCCCCceeEEEEeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMH 181 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~-~G~v~~v~i~~d~~tg~~kg~afVef~~ 181 (473)
+..-||||+++..+-+.-...+.+. .+.- .+.++.. +....||+|-++-.
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3446999999887765433333333 2332 2222222 23345798888764
No 201
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.90 E-value=2.4e+02 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=26.2
Q ss_pred ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 157 IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 157 v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
|..|.++. ...||.||+....+.+..+|..+.+..
T Consensus 36 i~~i~vp~-----~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPP-----ELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccC-----CCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 45555443 368999999998888999998887643
No 202
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.69 E-value=1.7e+02 Score=23.73 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=28.2
Q ss_pred EEEEccCCCCCCHHHHHH---HHhcCCCccEEEe--cccCCCCCCceeEEEEee
Q 011980 132 TLFVARLSYETTESKIKR---EFESYGPIKRVRL--VTDKETNKPRGYAFIEYM 180 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~---~F~~~G~v~~v~i--~~d~~tg~~kg~afVef~ 180 (473)
..|+.|||..+.+.++.. +|..++.-..|.+ ......+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 468999999998877654 4445543333333 112334566777766554
Done!