Query 011980
Match_columns 473
No_of_seqs 496 out of 3336
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 100.0 1E-38 3.5E-43 330.0 31.0 196 40-235 3-207 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-20 8.2E-25 153.0 10.7 81 129-209 18-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.8 2.5E-19 8.6E-24 149.8 11.0 82 128-209 4-85 (110)
4 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.8E-23 146.5 14.4 88 126-214 13-100 (116)
5 1u6f_A Tcubp1, RNA-binding pro 99.8 6.9E-19 2.3E-23 153.3 12.7 86 127-212 39-124 (139)
6 2lxi_A RNA-binding protein 10; 99.8 2.2E-19 7.4E-24 144.9 8.5 82 130-211 1-84 (91)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.6E-19 3.3E-23 143.9 11.7 88 127-214 9-96 (102)
8 2cq0_A Eukaryotic translation 99.8 9.7E-19 3.3E-23 144.2 11.6 88 124-211 9-96 (103)
9 2dnz_A Probable RNA-binding pr 99.8 8E-19 2.7E-23 142.4 10.8 85 128-212 3-87 (95)
10 1whw_A Hypothetical protein ri 99.8 1.6E-18 5.5E-23 141.8 12.7 86 127-212 5-90 (99)
11 1x5t_A Splicing factor 3B subu 99.8 1.1E-18 3.6E-23 141.9 11.4 84 128-211 3-87 (96)
12 2dnm_A SRP46 splicing factor; 99.8 1E-18 3.5E-23 144.0 11.3 85 127-211 10-94 (103)
13 2lkz_A RNA-binding protein 5; 99.8 3.5E-19 1.2E-23 144.7 8.3 81 129-209 8-94 (95)
14 2fy1_A RNA-binding motif prote 99.8 1.7E-18 5.8E-23 146.2 12.4 84 127-211 4-87 (116)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-18 4.1E-23 138.9 10.4 83 128-210 4-86 (87)
16 2dgo_A Cytotoxic granule-assoc 99.8 5.2E-18 1.8E-22 142.7 14.8 86 126-211 11-96 (115)
17 1x5u_A Splicing factor 3B subu 99.8 2.1E-18 7.2E-23 142.7 12.1 87 125-211 10-96 (105)
18 2dgs_A DAZ-associated protein 99.8 2E-18 6.8E-23 141.3 11.7 85 127-212 7-91 (99)
19 2cpz_A CUG triplet repeat RNA- 99.8 2E-18 6.8E-23 145.3 12.0 86 127-212 22-107 (115)
20 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-18 6.6E-23 153.6 12.6 85 127-211 36-120 (156)
21 3ex7_B RNA-binding protein 8A; 99.8 7.9E-19 2.7E-23 150.2 9.4 86 127-212 19-104 (126)
22 2x1f_A MRNA 3'-END-processing 99.8 2E-18 6.7E-23 140.5 11.2 83 129-211 1-83 (96)
23 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5.3E-23 137.6 9.9 82 127-208 4-85 (85)
24 2cqc_A Arginine/serine-rich sp 99.8 2.2E-18 7.6E-23 139.7 11.1 86 124-209 9-94 (95)
25 3md1_A Nuclear and cytoplasmic 99.8 2.2E-18 7.4E-23 136.1 10.7 81 130-210 1-81 (83)
26 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-18 6E-23 142.3 10.5 86 127-212 9-94 (102)
27 2cpf_A RNA binding motif prote 99.8 1.8E-18 6.1E-23 141.2 10.4 86 128-213 3-91 (98)
28 2e5h_A Zinc finger CCHC-type a 99.8 3.2E-18 1.1E-22 138.5 11.8 83 126-208 12-94 (94)
29 2dng_A Eukaryotic translation 99.8 4.4E-18 1.5E-22 140.3 12.2 86 125-212 10-95 (103)
30 1x4h_A RNA-binding protein 28; 99.8 5.5E-18 1.9E-22 141.5 12.7 85 127-211 12-102 (111)
31 2cph_A RNA binding motif prote 99.8 4E-18 1.4E-22 141.4 11.7 86 126-211 11-98 (107)
32 2la6_A RNA-binding protein FUS 99.8 2.6E-18 8.8E-23 140.7 10.3 84 125-208 8-99 (99)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-18 1.4E-22 141.2 11.4 86 126-211 9-97 (106)
34 2do4_A Squamous cell carcinoma 99.8 5.2E-18 1.8E-22 139.1 11.8 84 127-211 14-97 (100)
35 1wi8_A EIF-4B, eukaryotic tran 99.8 5.8E-18 2E-22 139.9 12.0 84 126-211 11-95 (104)
36 2cpe_A RNA-binding protein EWS 99.8 5.7E-18 1.9E-22 142.0 12.1 86 126-211 11-104 (113)
37 2d9p_A Polyadenylate-binding p 99.8 3.1E-18 1.1E-22 141.1 10.3 87 124-212 9-95 (103)
38 3p5t_L Cleavage and polyadenyl 99.8 5.5E-19 1.9E-23 142.1 5.6 82 131-212 2-85 (90)
39 2cq3_A RNA-binding protein 9; 99.7 1.3E-17 4.6E-22 137.3 13.7 89 126-216 11-99 (103)
40 1p27_B RNA-binding protein 8A; 99.7 2.4E-18 8.2E-23 142.5 9.0 85 127-211 20-104 (106)
41 1oo0_B CG8781-PA, drosophila Y 99.7 4.7E-18 1.6E-22 141.8 10.4 85 127-211 23-107 (110)
42 2div_A TRNA selenocysteine ass 99.7 4.2E-18 1.4E-22 139.3 9.8 84 127-210 6-94 (99)
43 2dnh_A Bruno-like 5, RNA bindi 99.7 6.4E-18 2.2E-22 139.7 11.0 84 127-211 12-98 (105)
44 3ulh_A THO complex subunit 4; 99.7 7E-18 2.4E-22 140.0 10.9 81 127-208 26-106 (107)
45 2jrs_A RNA-binding protein 39; 99.7 3.8E-18 1.3E-22 142.1 9.0 84 127-210 23-106 (108)
46 2khc_A Testis-specific RNP-typ 99.7 7.5E-18 2.6E-22 142.4 10.9 82 127-208 37-118 (118)
47 2dh8_A DAZ-associated protein 99.7 9E-18 3.1E-22 138.9 10.9 85 126-211 12-96 (105)
48 2do0_A HnRNP M, heterogeneous 99.7 2.8E-17 9.7E-22 137.9 13.9 83 127-210 12-94 (114)
49 4f25_A Polyadenylate-binding p 99.7 6.1E-18 2.1E-22 142.5 9.8 79 130-210 5-83 (115)
50 2cpi_A CCR4-NOT transcription 99.7 7.4E-18 2.5E-22 141.1 10.2 89 125-213 10-104 (111)
51 3ns6_A Eukaryotic translation 99.7 1E-18 3.5E-23 143.5 4.7 81 129-209 5-92 (100)
52 2cqp_A RNA-binding protein 12; 99.7 7.9E-18 2.7E-22 137.3 9.9 84 127-210 12-95 (98)
53 1x4a_A Splicing factor, argini 99.7 2.6E-17 9E-22 137.1 13.2 83 126-211 18-100 (109)
54 2dhg_A TRNA selenocysteine ass 99.7 7E-18 2.4E-22 139.2 9.6 84 127-211 6-91 (104)
55 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.4E-17 1.1E-21 134.9 13.7 84 126-211 11-94 (103)
56 3s7r_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 132.7 11.0 80 127-207 8-87 (87)
57 4a8x_A RNA-binding protein wit 99.7 9.4E-18 3.2E-22 133.9 9.7 81 129-209 3-84 (88)
58 2kxn_B Transformer-2 protein h 99.7 5.2E-18 1.8E-22 146.0 8.8 87 124-210 40-126 (129)
59 3ucg_A Polyadenylate-binding p 99.7 1.4E-17 4.9E-22 133.2 10.6 79 130-209 6-84 (89)
60 1x4c_A Splicing factor, argini 99.7 2.6E-17 8.9E-22 137.0 12.6 77 128-211 13-94 (108)
61 1sjq_A Polypyrimidine tract-bi 99.7 9E-18 3.1E-22 138.2 9.6 82 127-214 13-96 (105)
62 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-17 7.5E-22 134.4 11.9 80 129-211 8-91 (96)
63 2ywk_A Putative RNA-binding pr 99.7 1.1E-17 3.7E-22 135.7 9.8 82 127-209 13-94 (95)
64 1x4b_A Heterogeneous nuclear r 99.7 9.4E-18 3.2E-22 141.4 9.6 82 129-211 26-107 (116)
65 3n9u_C Cleavage and polyadenyl 99.7 1.1E-17 3.9E-22 148.5 10.6 82 129-210 54-137 (156)
66 2dgu_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 134.3 13.3 78 127-212 8-85 (103)
67 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.5E-22 138.6 10.8 84 127-211 22-105 (109)
68 2cq4_A RNA binding motif prote 99.7 7.7E-18 2.6E-22 141.5 8.8 81 129-210 24-104 (114)
69 2ek1_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 137.1 7.5 82 128-209 13-94 (95)
70 2cqg_A TDP-43, TAR DNA-binding 99.7 5.1E-17 1.8E-21 133.8 13.1 85 126-212 11-95 (103)
71 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.4E-22 149.1 10.5 85 127-211 69-153 (165)
72 2dgw_A Probable RNA-binding pr 99.7 6E-17 2.1E-21 130.3 12.6 82 127-211 7-88 (91)
73 2err_A Ataxin-2-binding protei 99.7 2.8E-17 9.4E-22 137.1 10.8 86 124-211 23-108 (109)
74 2cq1_A PTB-like protein L; RRM 99.7 5.2E-17 1.8E-21 133.3 12.0 84 126-215 11-96 (101)
75 2kt5_A RNA and export factor-b 99.7 6.6E-17 2.3E-21 137.9 13.1 85 127-212 32-116 (124)
76 2dgv_A HnRNP M, heterogeneous 99.7 2E-17 7E-22 133.2 9.3 83 127-211 5-87 (92)
77 1s79_A Lupus LA protein; RRM, 99.7 8.6E-18 2.9E-22 138.7 7.1 79 129-209 10-88 (103)
78 2cpy_A RNA-binding protein 12; 99.7 6.3E-18 2.2E-22 142.2 6.4 83 126-210 11-94 (114)
79 2a3j_A U1 small nuclear ribonu 99.7 2.3E-17 7.7E-22 141.3 9.8 81 127-210 26-110 (127)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.2E-18 2.1E-22 138.7 6.0 83 126-210 15-98 (100)
81 2dis_A Unnamed protein product 99.7 4E-17 1.4E-21 135.9 11.0 85 128-212 6-94 (109)
82 2mss_A Protein (musashi1); RNA 99.7 9.9E-18 3.4E-22 129.7 6.8 75 132-207 1-75 (75)
83 2m2b_A RNA-binding protein 10; 99.7 1.1E-17 3.8E-22 144.2 7.8 83 127-210 20-108 (131)
84 2jwn_A Embryonic polyadenylate 99.7 3.5E-17 1.2E-21 139.5 10.8 80 130-210 36-115 (124)
85 2fc9_A NCL protein; structure 99.7 5.4E-17 1.9E-21 133.2 11.5 81 127-211 12-92 (101)
86 2nlw_A Eukaryotic translation 99.7 2.4E-17 8.3E-22 136.5 9.4 82 126-209 11-99 (105)
87 1p1t_A Cleavage stimulation fa 99.7 1.3E-17 4.5E-22 137.5 7.8 83 129-211 7-89 (104)
88 2kn4_A Immunoglobulin G-bindin 99.7 6.2E-17 2.1E-21 143.9 12.7 85 127-211 67-151 (158)
89 1x4e_A RNA binding motif, sing 99.7 3.5E-18 1.2E-22 135.7 4.0 81 128-208 3-83 (85)
90 3md3_A Nuclear and cytoplasmic 99.7 1.2E-17 4E-22 148.8 7.8 83 126-208 83-165 (166)
91 2wbr_A GW182, gawky, LD47780P; 99.7 4.1E-17 1.4E-21 128.6 9.3 74 129-208 6-79 (89)
92 2fc8_A NCL protein; structure 99.7 7.1E-17 2.4E-21 132.6 11.2 85 124-211 9-93 (102)
93 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.5E-22 140.2 6.9 86 127-212 22-107 (115)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.8E-17 2.7E-21 140.1 11.9 81 127-207 60-140 (140)
95 2qfj_A FBP-interacting repress 99.7 1.6E-17 5.6E-22 154.7 8.0 87 129-215 124-210 (216)
96 2ad9_A Polypyrimidine tract-bi 99.7 4.7E-17 1.6E-21 137.2 10.0 83 126-214 27-111 (119)
97 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6.2E-22 143.7 7.5 85 127-211 44-128 (135)
98 3q2s_C Cleavage and polyadenyl 99.7 1.8E-17 6.3E-22 156.6 8.1 81 129-209 67-149 (229)
99 2ki2_A SS-DNA binding protein 99.7 7.7E-18 2.6E-22 135.2 4.7 81 131-212 2-82 (90)
100 2jvr_A Nucleolar protein 3; RN 99.7 6.5E-17 2.2E-21 135.0 10.4 78 128-209 26-104 (111)
101 1wez_A HnRNP H', FTP-3, hetero 99.7 4.2E-17 1.4E-21 134.3 9.0 81 127-210 12-92 (102)
102 1l3k_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 153.2 6.3 139 72-211 29-184 (196)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.8E-22 129.0 6.0 76 131-207 1-76 (77)
104 3r27_A HnRNP L, heterogeneous 99.7 7.7E-17 2.6E-21 131.3 10.1 79 127-211 18-98 (100)
105 2dnq_A RNA-binding protein 4B; 99.7 8.6E-17 3E-21 129.1 10.2 78 127-212 5-82 (90)
106 1x4d_A Matrin 3; structural ge 99.7 5.8E-17 2E-21 133.1 9.2 80 125-210 10-92 (102)
107 2dgt_A RNA-binding protein 30; 99.7 2.6E-16 9E-21 126.8 12.8 77 127-211 7-83 (92)
108 1wg5_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 132.3 10.3 83 127-211 12-95 (104)
109 2lcw_A RNA-binding protein FUS 99.5 2.6E-18 8.8E-23 144.9 0.0 84 128-211 5-96 (116)
110 1why_A Hypothetical protein ri 99.7 1E-16 3.5E-21 130.5 9.6 78 127-210 14-93 (97)
111 1x4g_A Nucleolysin TIAR; struc 99.7 1.8E-16 6E-21 132.1 11.1 78 128-211 23-100 (109)
112 4f02_A Polyadenylate-binding p 99.7 5.7E-18 1.9E-22 158.4 2.1 137 72-210 31-181 (213)
113 2db1_A Heterogeneous nuclear r 99.7 9.5E-17 3.3E-21 135.8 9.5 81 127-209 14-97 (118)
114 2cpd_A Apobec-1 stimulating pr 99.7 4.7E-16 1.6E-20 127.1 13.3 77 127-211 12-90 (99)
115 1x5o_A RNA binding motif, sing 99.7 9.9E-17 3.4E-21 134.6 9.4 82 127-209 22-111 (114)
116 1fj7_A Nucleolin RBD1, protein 99.7 1.6E-17 5.6E-22 136.3 4.4 82 127-210 14-95 (101)
117 1wel_A RNA-binding protein 12; 99.7 2.9E-17 9.9E-22 140.2 5.8 82 127-209 22-103 (124)
118 2kvi_A Nuclear polyadenylated 99.7 6.3E-17 2.1E-21 131.6 7.3 78 127-212 7-85 (96)
119 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4E-21 130.2 8.9 79 127-210 16-94 (97)
120 2xnq_A Nuclear polyadenylated 99.7 2.5E-16 8.4E-21 128.4 10.7 77 126-210 18-95 (97)
121 1wex_A Hypothetical protein (r 99.7 1.4E-16 4.8E-21 131.5 9.3 80 127-212 12-93 (104)
122 2jvo_A Nucleolar protein 3; nu 99.7 1.8E-16 6.2E-21 131.9 10.0 76 127-210 28-103 (108)
123 2krb_A Eukaryotic translation 99.7 3.6E-17 1.2E-21 128.7 5.4 72 131-204 2-80 (81)
124 1nu4_A U1A RNA binding domain; 99.7 8.1E-17 2.8E-21 131.0 7.6 81 127-210 5-89 (97)
125 2f3j_A RNA and export factor b 99.7 2E-16 6.8E-21 143.5 10.9 84 127-211 85-168 (177)
126 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-17 1.6E-21 125.9 5.7 75 132-207 1-75 (75)
127 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-16 5.6E-21 128.2 9.0 78 127-211 5-84 (93)
128 2la4_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 130.1 9.1 75 129-209 26-100 (101)
129 2cpj_A Non-POU domain-containi 99.7 3.5E-16 1.2E-20 127.8 10.8 79 127-211 12-90 (99)
130 2cjk_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 146.2 5.1 81 129-210 86-166 (167)
131 1wf1_A RNA-binding protein RAL 99.7 4.6E-16 1.6E-20 129.8 11.6 73 129-209 26-99 (110)
132 2hvz_A Splicing factor, argini 99.7 2.1E-16 7.1E-21 129.7 9.2 76 131-211 1-76 (101)
133 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-16 7.1E-21 132.8 9.4 80 127-209 5-84 (115)
134 3beg_B Splicing factor, argini 99.7 1.1E-16 3.6E-21 134.9 7.5 74 129-209 15-93 (115)
135 1x4f_A Matrin 3; structural ge 99.7 2.2E-16 7.5E-21 131.6 9.3 82 127-214 22-106 (112)
136 2hgn_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 141.8 4.9 81 128-211 44-124 (139)
137 2ytc_A PRE-mRNA-splicing facto 99.7 4.3E-16 1.5E-20 123.4 10.3 76 127-208 9-85 (85)
138 1fjc_A Nucleolin RBD2, protein 99.7 1.6E-16 5.6E-21 128.9 8.1 80 127-211 13-92 (96)
139 2hgl_A HNRPF protein, heteroge 99.7 1.3E-16 4.4E-21 138.2 7.8 80 128-209 42-124 (136)
140 2e5g_A U6 snRNA-specific termi 99.7 4.9E-16 1.7E-20 125.7 10.7 77 129-211 7-83 (94)
141 2dnp_A RNA-binding protein 14; 99.7 6.7E-16 2.3E-20 123.8 11.2 76 127-210 6-81 (90)
142 1b7f_A Protein (SXL-lethal pro 99.7 9.6E-17 3.3E-21 143.3 6.8 82 126-207 85-168 (168)
143 2dnn_A RNA-binding protein 12; 99.7 3.6E-16 1.2E-20 130.2 9.7 77 130-209 16-92 (109)
144 2j8a_A Histone-lysine N-methyl 99.6 3.4E-16 1.1E-20 131.5 9.4 78 131-208 3-94 (136)
145 2g4b_A Splicing factor U2AF 65 99.6 1.2E-16 4.2E-21 143.3 7.1 111 96-207 50-171 (172)
146 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-16 3.7E-21 133.0 6.1 81 127-209 8-91 (107)
147 4f02_A Polyadenylate-binding p 99.6 4.5E-16 1.5E-20 145.4 10.9 83 127-209 12-94 (213)
148 3egn_A RNA-binding protein 40; 99.6 1.2E-16 4E-21 139.9 6.3 84 127-210 42-130 (143)
149 1x5p_A Negative elongation fac 99.6 1.8E-15 6E-20 123.2 12.5 78 127-212 12-89 (97)
150 2cq2_A Hypothetical protein LO 99.6 9.1E-16 3.1E-20 128.0 10.2 79 126-210 21-106 (114)
151 1whx_A Hypothetical protein ri 99.6 6.2E-16 2.1E-20 129.3 9.1 77 129-211 9-85 (111)
152 2xs2_A Deleted in azoospermia- 99.6 3.4E-16 1.2E-20 128.6 6.9 79 129-210 8-86 (102)
153 1fxl_A Paraneoplastic encephal 99.6 1.4E-16 4.7E-21 141.9 4.6 81 127-207 85-167 (167)
154 2i2y_A Fusion protein consists 99.6 9.7E-16 3.3E-20 135.1 9.0 79 127-210 70-148 (150)
155 2dha_A FLJ20171 protein; RRM d 99.6 6E-16 2.1E-20 131.6 7.0 79 129-209 22-104 (123)
156 1fxl_A Paraneoplastic encephal 99.6 2.4E-15 8.2E-20 133.8 11.1 81 130-210 2-82 (167)
157 2e44_A Insulin-like growth fac 99.6 1.4E-15 4.8E-20 123.4 8.7 79 128-210 13-92 (96)
158 1b7f_A Protein (SXL-lethal pro 99.6 2E-15 6.7E-20 134.8 10.0 82 129-210 2-83 (168)
159 2ghp_A U4/U6 snRNA-associated 99.6 1.4E-15 4.6E-20 148.8 9.6 139 71-210 132-291 (292)
160 1fje_B Nucleolin RBD12, protei 99.6 6.1E-16 2.1E-20 139.4 6.2 133 72-210 29-174 (175)
161 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.6E-20 120.7 8.4 75 129-210 4-78 (88)
162 3nmr_A Cugbp ELAV-like family 99.6 3.1E-16 1.1E-20 140.8 3.9 78 129-207 94-174 (175)
163 2hgm_A HNRPF protein, heteroge 99.6 1.2E-15 4.2E-20 130.1 7.4 79 128-209 40-120 (126)
164 2yh0_A Splicing factor U2AF 65 99.6 5.3E-15 1.8E-19 135.7 11.9 84 128-211 112-195 (198)
165 2diu_A KIAA0430 protein; struc 99.6 2.9E-15 9.8E-20 119.1 7.9 73 129-211 7-85 (96)
166 1sjr_A Polypyrimidine tract-bi 99.6 3.9E-15 1.3E-19 131.9 9.4 79 129-211 45-125 (164)
167 2pe8_A Splicing factor 45; RRM 99.6 8.1E-15 2.8E-19 121.1 10.3 84 126-209 4-93 (105)
168 2dnl_A Cytoplasmic polyadenyla 99.6 8.8E-15 3E-19 122.8 10.7 78 128-208 6-86 (114)
169 3zzy_A Polypyrimidine tract-bi 99.6 7.4E-15 2.5E-19 125.3 10.3 78 129-211 27-107 (130)
170 3d2w_A TAR DNA-binding protein 99.6 6.1E-15 2.1E-19 118.1 9.1 75 127-210 8-84 (89)
171 1wf0_A TDP-43, TAR DNA-binding 99.6 4.4E-15 1.5E-19 118.5 8.0 77 128-211 3-79 (88)
172 2e5i_A Heterogeneous nuclear r 99.6 1.2E-14 4.1E-19 123.4 10.8 75 131-211 26-103 (124)
173 1l3k_A Heterogeneous nuclear r 99.6 8.5E-15 2.9E-19 134.1 10.1 83 127-210 10-92 (196)
174 2bz2_A Negative elongation fac 99.6 7.7E-15 2.6E-19 124.6 8.6 77 127-211 36-112 (121)
175 3tyt_A Heterogeneous nuclear r 99.6 1.2E-14 4.2E-19 134.9 10.6 79 128-211 2-81 (205)
176 2hzc_A Splicing factor U2AF 65 99.5 9.8E-15 3.4E-19 116.0 8.4 71 129-206 5-86 (87)
177 3smz_A Protein raver-1, ribonu 99.5 4.6E-15 1.6E-19 144.4 7.3 140 71-211 110-265 (284)
178 3md3_A Nuclear and cytoplasmic 99.5 2.2E-14 7.4E-19 127.4 10.5 80 131-211 1-80 (166)
179 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-14 4.6E-19 141.0 9.3 76 128-208 205-281 (282)
180 2adc_A Polypyrimidine tract-bi 99.5 8.8E-15 3E-19 138.2 7.4 78 128-210 149-228 (229)
181 2qfj_A FBP-interacting repress 99.5 1.5E-14 5.2E-19 134.5 8.9 81 129-209 27-107 (216)
182 3smz_A Protein raver-1, ribonu 99.5 2.8E-14 9.6E-19 138.8 9.1 85 127-211 92-176 (284)
183 2cjk_A Nuclear polyadenylated 99.5 3E-14 1E-18 126.9 8.5 79 129-209 2-80 (167)
184 2voo_A Lupus LA protein; RNA-b 99.5 5E-14 1.7E-18 129.5 9.8 78 130-209 109-186 (193)
185 3sde_A Paraspeckle component 1 99.5 1.5E-14 5.3E-19 139.3 6.4 133 72-210 38-179 (261)
186 3pgw_A U1-A; protein-RNA compl 99.5 1E-13 3.6E-18 134.6 11.3 81 127-210 6-90 (282)
187 2adc_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 132.8 8.8 83 123-210 27-110 (229)
188 3nmr_A Cugbp ELAV-like family 99.5 5.2E-14 1.8E-18 126.2 8.2 82 129-210 2-88 (175)
189 2dit_A HIV TAT specific factor 99.5 2.8E-13 9.7E-18 113.2 11.9 81 126-210 11-102 (112)
190 1qm9_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 129.3 7.7 78 128-210 118-197 (198)
191 2ghp_A U4/U6 snRNA-associated 99.5 2.4E-14 8.1E-19 139.9 5.1 136 72-210 57-197 (292)
192 3u1l_A PRE-mRNA-splicing facto 99.5 4.7E-14 1.6E-18 133.0 6.9 81 127-213 131-232 (240)
193 3v4m_A Splicing factor U2AF 65 99.4 2E-13 7E-18 112.7 9.0 83 127-209 2-96 (105)
194 3tyt_A Heterogeneous nuclear r 99.4 1.6E-13 5.5E-18 127.3 8.6 78 128-207 121-204 (205)
195 1fje_B Nucleolin RBD12, protei 99.4 6.7E-14 2.3E-18 125.8 5.7 83 126-210 9-91 (175)
196 1qm9_A Polypyrimidine tract-bi 99.4 2.4E-13 8.3E-18 124.9 7.5 77 130-211 3-80 (198)
197 3ue2_A Poly(U)-binding-splicin 99.4 4.7E-13 1.6E-17 112.8 8.0 81 129-209 19-108 (118)
198 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4.2E-18 113.8 4.2 72 135-207 20-103 (104)
199 3sde_A Paraspeckle component 1 99.4 7.1E-13 2.4E-17 127.6 9.9 77 127-209 19-95 (261)
200 2yh0_A Splicing factor U2AF 65 99.3 2E-12 6.9E-17 118.3 9.4 75 129-210 3-88 (198)
201 2g4b_A Splicing factor U2AF 65 99.3 1.8E-12 6.3E-17 115.8 8.8 75 129-210 3-88 (172)
202 3tht_A Alkylated DNA repair pr 99.3 2.7E-12 9.4E-17 127.3 10.3 80 123-208 11-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.4E-11 4.9E-16 100.4 10.8 75 130-211 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.3 1.4E-11 4.7E-16 103.0 10.7 78 127-208 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 1.4E-10 4.9E-15 91.3 8.3 74 127-209 4-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 1.5E-10 5E-15 97.2 8.9 79 124-208 12-94 (121)
207 3pgw_S U1-70K; protein-RNA com 99.0 2.1E-09 7.2E-14 110.7 14.7 13 106-118 115-127 (437)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 1.2E-09 4.2E-14 86.4 7.6 74 126-208 11-93 (95)
209 3dxb_A Thioredoxin N-terminall 98.8 5.6E-09 1.9E-13 97.6 5.6 79 130-208 124-211 (222)
210 2l9w_A U4/U6 snRNA-associated- 98.4 3.1E-06 1.1E-10 68.2 11.1 71 129-205 20-95 (117)
211 1wey_A Calcipressin 1; structu 97.8 7.7E-05 2.6E-09 59.9 8.1 75 129-209 4-83 (104)
212 1uw4_A UPF3X; nonsense mediate 97.4 0.00088 3E-08 52.8 9.5 79 131-209 2-87 (91)
213 1whv_A Poly(A)-specific ribonu 97.3 0.00055 1.9E-08 54.0 7.1 56 128-192 14-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.1 0.00069 2.4E-08 53.6 5.6 54 131-193 7-60 (101)
215 2dhx_A Poly (ADP-ribose) polym 97.0 0.0076 2.6E-07 48.1 11.0 72 129-209 7-83 (104)
216 1wwh_A Nucleoporin 35, nucleop 97.0 0.0032 1.1E-07 51.9 8.5 71 129-207 23-94 (119)
217 2l08_A Regulator of nonsense t 96.5 0.0052 1.8E-07 48.7 6.2 80 129-208 8-94 (97)
218 3p3d_A Nucleoporin 53; structu 96.2 0.0083 2.8E-07 50.1 6.2 77 130-208 7-97 (132)
219 3pq1_A Poly(A) RNA polymerase; 95.2 0.011 3.7E-07 60.5 3.9 54 131-190 54-107 (464)
220 2kn4_A Immunoglobulin G-bindin 94.4 0.021 7.3E-07 49.3 3.2 35 159-195 2-36 (158)
221 2i2y_A Fusion protein consists 93.9 0.016 5.5E-07 49.8 1.2 40 169-209 10-50 (150)
222 4f25_A Polyadenylate-binding p 90.8 0.0058 2E-07 50.2 -5.5 74 72-146 21-113 (115)
223 3d45_A Poly(A)-specific ribonu 88.3 0.98 3.4E-05 46.8 7.9 55 130-193 440-494 (507)
224 2g0c_A ATP-dependent RNA helic 77.2 4.3 0.00015 30.0 5.4 68 132-208 2-75 (76)
225 4eyt_A Telomerase associated p 65.7 28 0.00096 26.6 7.5 56 129-192 11-66 (129)
226 3lqv_A PRE-mRNA branch site pr 58.4 0.87 3E-05 36.5 -2.3 76 73-156 25-109 (115)
227 4e8u_A Putative uncharacterize 36.2 96 0.0033 26.8 7.0 56 132-190 14-81 (172)
228 3h7h_B Transcription elongatio 35.0 55 0.0019 25.9 5.0 35 156-195 40-74 (106)
229 3fry_A Probable copper-exporti 32.7 1.2E+02 0.0042 21.0 6.4 55 131-192 7-61 (73)
230 3lpe_A Putative transcription 32.7 84 0.0029 24.0 5.6 34 157-195 40-73 (92)
231 2exu_A Transcription initiatio 26.4 98 0.0034 27.5 5.6 36 157-197 139-174 (200)
232 3ts2_A Protein LIN-28 homolog 21.2 13 0.00044 31.6 -1.3 27 146-180 3-29 (148)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=100.00 E-value=1e-38 Score=330.01 Aligned_cols=196 Identities=58% Similarity=1.022 Sum_probs=155.9
Q ss_pred CCCChhhhcccCCCCCCCCCCCCCC-----CCCCCCCChHHHHhhcCCCCCCCCCCch----hHHHHhhHHHHhhhHHHH
Q 011980 40 TGLTANLLKLFEPRAPLEYKPPPEK-----RKCPPLTGMAQFVSHFAEPGDPLYAPPV----ERRARIHKLRLEKGAEKA 110 (473)
Q Consensus 40 ~~~pp~l~~lf~p~pP~~~~pp~~~-----~~~~~~~~~~~~~~~f~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~ 110 (473)
..|||+|++||+|.||+++++|+.. ..+.+++++.+||..|...........+ +...........+....+
T Consensus 3 ~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~ 82 (437)
T 3pgw_S 3 QFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEV 82 (437)
T ss_pred CcCCccHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999877543 2567788999999888765443333221 222222233333344445
Q ss_pred HHHHhhcCCCCCCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHH
Q 011980 111 AEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 190 (473)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~ 190 (473)
...+..|.+...+.+...+.++|||+|||+.||+++|..+|++||.|+.|.|+.++.||+++|||||+|.+.++|.+||.
T Consensus 83 ~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 83 ETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred HHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 55667787777777778889999999999999999999999999999999999999899999999999999999999999
Q ss_pred HcCCceeCCEEEEEeeecCCCCCCCCCCccCCCCCCCCCCCcccc
Q 011980 191 QADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVN 235 (473)
Q Consensus 191 ~l~g~~i~gr~l~V~~a~~~~~~~~~~~~~gg~~~g~~~~~~~~~ 235 (473)
.|||+.|+|+.|.|+|+.+.....|.+...+||+|+.++++...+
T Consensus 163 ~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ggG~gg~~~gg~~~~ 207 (437)
T 3pgw_S 163 HADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVN 207 (437)
T ss_pred HcCCCEECCEEEEEEEeCCCCCCCCCCCCcCCCCCCCCCCCCccc
Confidence 999999999999999999998888988777766665554444433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=153.01 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=78.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=149.78 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=79.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+||++.+++++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 4
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=146.53 Aligned_cols=88 Identities=28% Similarity=0.577 Sum_probs=81.2
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|++ .|+|+.|.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 355789999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred eecCCCCCC
Q 011980 206 VERGRTVPN 214 (473)
Q Consensus 206 ~a~~~~~~~ 214 (473)
++.....+.
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 997654433
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=153.29 Aligned_cols=86 Identities=27% Similarity=0.521 Sum_probs=81.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=144.93 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=76.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC-CceeCCEEEEEeee
Q 011980 130 YKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD-GRKLDGRRVLVDVE 207 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~-g~~i~gr~l~V~~a 207 (473)
+++|||+|||+.+|+++|.++|++|| +|..|.|+.++.||.++|||||+|.+.++|.+||+.|+ +..|+|+.|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=143.93 Aligned_cols=88 Identities=26% Similarity=0.476 Sum_probs=82.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 011980 207 ERGRTVPN 214 (473)
Q Consensus 207 a~~~~~~~ 214 (473)
+.+.....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765443
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=144.22 Aligned_cols=88 Identities=30% Similarity=0.443 Sum_probs=82.3
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|.++.+..
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998654
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=142.39 Aligned_cols=85 Identities=28% Similarity=0.508 Sum_probs=80.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 011980 208 RGRTV 212 (473)
Q Consensus 208 ~~~~~ 212 (473)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=141.76 Aligned_cols=86 Identities=30% Similarity=0.575 Sum_probs=81.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 11
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=141.95 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=79.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEE-EecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRV-RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v-~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.+.++|||+|||+.+++++|..+|++||.|..| .|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98654
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=144.05 Aligned_cols=85 Identities=36% Similarity=0.597 Sum_probs=80.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98643
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=144.71 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=75.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCC--ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc----eeCCEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGP--IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR----KLDGRRV 202 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~--v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~----~i~gr~l 202 (473)
.-.||||+|||+.+|+++|.++|++||. |..|.|+.|+.||.++|||||+|.+.++|.+||+.|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999994 789999999999999999999999999999999999996 5999999
Q ss_pred EEeeecC
Q 011980 203 LVDVERG 209 (473)
Q Consensus 203 ~V~~a~~ 209 (473)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 14
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=146.18 Aligned_cols=84 Identities=36% Similarity=0.600 Sum_probs=79.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98643
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=138.85 Aligned_cols=83 Identities=30% Similarity=0.520 Sum_probs=77.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 36789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCC
Q 011980 208 RGR 210 (473)
Q Consensus 208 ~~~ 210 (473)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.2e-18 Score=142.73 Aligned_cols=86 Identities=30% Similarity=0.510 Sum_probs=81.1
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
|+....
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998654
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=142.67 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 125 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
.++.+..
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9998654
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=141.27 Aligned_cols=85 Identities=22% Similarity=0.486 Sum_probs=80.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4577899999999999999999999999999999999999899999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 986543
No 19
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2e-18 Score=145.33 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=80.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 986543
No 20
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=1.9e-18 Score=153.55 Aligned_cols=85 Identities=32% Similarity=0.475 Sum_probs=80.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98643
No 21
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=7.9e-19 Score=150.25 Aligned_cols=86 Identities=31% Similarity=0.447 Sum_probs=80.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 986544
No 22
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2e-18 Score=140.52 Aligned_cols=83 Identities=23% Similarity=0.501 Sum_probs=79.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
|+++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=1.5e-18 Score=137.61 Aligned_cols=82 Identities=28% Similarity=0.511 Sum_probs=78.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|+|+.|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=139.70 Aligned_cols=86 Identities=37% Similarity=0.592 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|+|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.2e-18 Score=136.10 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=77.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
+.+|||+|||+.+++++|..+|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred C
Q 011980 210 R 210 (473)
Q Consensus 210 ~ 210 (473)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=142.34 Aligned_cols=86 Identities=33% Similarity=0.608 Sum_probs=81.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44788999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 986543
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=141.20 Aligned_cols=86 Identities=29% Similarity=0.509 Sum_probs=79.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCC---CCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKE---TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~---tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 011980 205 DVERGRTVP 213 (473)
Q Consensus 205 ~~a~~~~~~ 213 (473)
.++.....+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999875443
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=138.50 Aligned_cols=83 Identities=24% Similarity=0.492 Sum_probs=78.9
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34578899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.4e-18 Score=140.31 Aligned_cols=86 Identities=33% Similarity=0.594 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 125 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
....+.++|||+|||+.+++++|..+|++|| |..|.|+.+..++.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3355789999999999999999999999997 999999999999999999999999999999999 89999999999999
Q ss_pred eeecCCCC
Q 011980 205 DVERGRTV 212 (473)
Q Consensus 205 ~~a~~~~~ 212 (473)
+++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99986543
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.5e-18 Score=141.55 Aligned_cols=85 Identities=31% Similarity=0.543 Sum_probs=80.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC------CceeCCE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD------GRKLDGR 200 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~------g~~i~gr 200 (473)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..|| |..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4578899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEeeecCCC
Q 011980 201 RVLVDVERGRT 211 (473)
Q Consensus 201 ~l~V~~a~~~~ 211 (473)
.|.|.++.++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998654
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=141.42 Aligned_cols=86 Identities=22% Similarity=0.537 Sum_probs=80.7
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEeccc-CCCCCCceeEEEEeechHHHHHHHHHc-CCceeCCEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTD-KETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVL 203 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d-~~tg~~kg~afVef~~~~~a~~Al~~l-~g~~i~gr~l~ 203 (473)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| ||..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3457899999999999999999999999999999999998 788999999999999999999999999 99999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|+|+.+..
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998654
No 32
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=140.66 Aligned_cols=84 Identities=30% Similarity=0.398 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccE--------EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 125 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--------v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
....+.++|||+|||+.+++++|..+|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+||+.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCEEEEEeeec
Q 011980 197 LDGRRVLVDVER 208 (473)
Q Consensus 197 i~gr~l~V~~a~ 208 (473)
|+|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=4e-18 Score=141.23 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=80.6
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee---CCEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---DGRRV 202 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i---~gr~l 202 (473)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..| .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 355789999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
.|.++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998644
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=139.06 Aligned_cols=84 Identities=24% Similarity=0.470 Sum_probs=79.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98643
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=139.85 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=78.7
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCC-CCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~t-g~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...+.++|||+|||+.+++++|..+|+.|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345789999999999999999999999999 999999999887 999999999999999999999 89999999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
+++.++.
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998654
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=142.03 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=80.5
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCcc--------EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIK--------RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--------~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
...+.++|||+|||+.+|+++|.++|++||.|. .|.|+.++.++.++|||||+|.+.++|.+||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345789999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCEEEEEeeecCCC
Q 011980 198 DGRRVLVDVERGRT 211 (473)
Q Consensus 198 ~gr~l~V~~a~~~~ 211 (473)
+|+.|.|.++.+..
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998644
No 37
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=141.15 Aligned_cols=87 Identities=14% Similarity=0.425 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 334557899999999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred EeeecCCCC
Q 011980 204 VDVERGRTV 212 (473)
Q Consensus 204 V~~a~~~~~ 212 (473)
|.|+.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999987543
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=5.5e-19 Score=142.10 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=72.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCC--CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 131 KTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+|||+|||+.+|+++|.++|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 011980 209 GRTV 212 (473)
Q Consensus 209 ~~~~ 212 (473)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=137.32 Aligned_cols=89 Identities=20% Similarity=0.467 Sum_probs=80.5
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999999999999998864 389999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 011980 206 VERGRTVPNWR 216 (473)
Q Consensus 206 ~a~~~~~~~~~ 216 (473)
++.+.....+.
T Consensus 89 ~a~~~~~~~~~ 99 (103)
T 2cq3_A 89 NATARVMTNSG 99 (103)
T ss_dssp ECCSSCCCCCS
T ss_pred EcccCCCCCCC
Confidence 99887655543
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=142.55 Aligned_cols=85 Identities=32% Similarity=0.459 Sum_probs=80.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.7e-18 Score=141.84 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97643
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=139.26 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=79.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCcc-EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE----
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIK-RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR---- 201 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~-~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~---- 201 (473)
..+.++|||+|||+.+++++|..+|++||.|. .|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44789999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011980 202 VLVDVERGR 210 (473)
Q Consensus 202 l~V~~a~~~ 210 (473)
|.|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998753
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=6.4e-18 Score=139.71 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=78.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC---EEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG---RRVL 203 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g---r~l~ 203 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4578999999999999999999999999999999999988 69999999999999999999999999999988 9999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|.++.+..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998654
No 44
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=7e-18 Score=139.98 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=77.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4578999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=142.15 Aligned_cols=84 Identities=31% Similarity=0.540 Sum_probs=80.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||+.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8764
No 46
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.5e-18 Score=142.42 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=77.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=138.87 Aligned_cols=85 Identities=26% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 355789999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 998654
No 48
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=137.89 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=78.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4568899999999999999999999999999999999987 599999999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8753
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=6.1e-18 Score=142.50 Aligned_cols=79 Identities=23% Similarity=0.484 Sum_probs=74.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
..+|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999885 45789999999999999999999999999999999999875
Q ss_pred C
Q 011980 210 R 210 (473)
Q Consensus 210 ~ 210 (473)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 50
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=141.05 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEccCCCCCCHHHHH---HHHhcCCCccEEEecccCCCC---CCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 125 VSGDPYKTLFVARLSYETTESKIK---REFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v~i~~d~~tg---~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
+...+.++|||+|||+.+++++|. ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 999999999999999887654 45699999999999999999999999999
Q ss_pred CEEEEEeeecCCCCC
Q 011980 199 GRRVLVDVERGRTVP 213 (473)
Q Consensus 199 gr~l~V~~a~~~~~~ 213 (473)
|+.|.|+|+.++...
T Consensus 90 gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 90 GRTLKASLGTTKYCS 104 (111)
T ss_dssp TEEEEEESCCCCSCS
T ss_pred CEEEEEEeccccccc
Confidence 999999999876543
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=1e-18 Score=143.46 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=77.8
Q ss_pred CCcEEEEccCCC------CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC-EE
Q 011980 129 PYKTLFVARLSY------ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-RR 201 (473)
Q Consensus 129 ~~~~l~V~nL~~------~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g-r~ 201 (473)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+.|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeeecC
Q 011980 202 VLVDVERG 209 (473)
Q Consensus 202 l~V~~a~~ 209 (473)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 52
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=137.34 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=78.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....++|||+|||+.+++++|+.+|.+||.|..+.++.+..+|.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44678999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8743
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=137.06 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=75.8
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999653 5689999999999999999999999999999999999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
|+.+..
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998643
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=139.22 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=79.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhc-CCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce-eCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFES-YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK-LDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~-~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~-i~gr~l~V 204 (473)
..+.++|||+|||+.+|+++|..+|++ ||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
.++.+..
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997643
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=134.92 Aligned_cols=84 Identities=31% Similarity=0.511 Sum_probs=77.2
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345789999999999999999999999999999999998854 368999999999999999999999999999999999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
|+.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998644
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.5e-17 Score=132.67 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=75.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4578899999999999999999999999999999999999899999999999999999999996 688899999999987
Q ss_pred e
Q 011980 207 E 207 (473)
Q Consensus 207 a 207 (473)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=133.89 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=76.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCC-CceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNK-PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~-~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999887666 8999999999999999999999999999999999999
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=5.2e-18 Score=145.96 Aligned_cols=87 Identities=38% Similarity=0.613 Sum_probs=81.7
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCC
Q 011980 204 VDVERGR 210 (473)
Q Consensus 204 V~~a~~~ 210 (473)
|+|+.+.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999764
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.4e-17 Score=133.19 Aligned_cols=79 Identities=24% Similarity=0.570 Sum_probs=76.1
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 8999999999999999875
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=136.97 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC-----EEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-----RRV 202 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g-----r~l 202 (473)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||+.|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
.|+++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998643
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9e-18 Score=138.20 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=74.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC--CceeCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~--g~~i~gr~l~V 204 (473)
+.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||+.|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 557899999999999999999999999999999999864 6899999999999999999886 47899999999
Q ss_pred eeecCCCCCC
Q 011980 205 DVERGRTVPN 214 (473)
Q Consensus 205 ~~a~~~~~~~ 214 (473)
.|+..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765544
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=134.37 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=75.1
Q ss_pred CCcEEEEccCCCCCCHHHHH----HHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 129 PYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
..++|||+|||+.+++++|. .+|++||.|..|.|+.+..+ +|||||+|.+.++|.+||+.|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56899999999999999999 99999999999999998764 889999999999999999999999999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
+++.+..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998654
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=135.70 Aligned_cols=82 Identities=26% Similarity=0.471 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34678999999999999999999999999999999999885 89999999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=141.43 Aligned_cols=82 Identities=26% Similarity=0.547 Sum_probs=77.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+++++|..+|..||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457999999999999999999999999999999999998999999999999999999999986 9999999999999998
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=148.54 Aligned_cols=82 Identities=17% Similarity=0.347 Sum_probs=77.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCC--CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..++|||+|||+++|+++|..+|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 66
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=4.4e-17 Score=134.31 Aligned_cols=78 Identities=24% Similarity=0.483 Sum_probs=71.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+ ++||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999886 35999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 987544
No 67
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=138.55 Aligned_cols=84 Identities=24% Similarity=0.485 Sum_probs=75.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999999989999999999999999999999876 5999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97643
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=141.49 Aligned_cols=81 Identities=20% Similarity=0.482 Sum_probs=77.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||+|||+.+++++|..+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 69
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=6.1e-18 Score=137.13 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35689999999999999999999999999999999988888999999999999999999999999999999999999987
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 70
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=133.80 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=78.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 5789999999999
Q ss_pred eecCCCC
Q 011980 206 VERGRTV 212 (473)
Q Consensus 206 ~a~~~~~ 212 (473)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9986543
No 71
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=149.11 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=79.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 97643
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6e-17 Score=130.25 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=76.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....++|||+|||+.+++++|.++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999998 679999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98653
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=137.10 Aligned_cols=86 Identities=19% Similarity=0.467 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+++++|..+|++||.|..|.|+.+. +.++|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345578999999999999999999999999999999999885 45899999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|+++.++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998653
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=133.34 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=74.8
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc--CCceeCCEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA--DGRKLDGRRVL 203 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l--~g~~i~gr~l~ 203 (473)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+||+.| ++..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3557899999999999999999999999999999988764 689999999999999999976 57889999999
Q ss_pred EeeecCCCCCCC
Q 011980 204 VDVERGRTVPNW 215 (473)
Q Consensus 204 V~~a~~~~~~~~ 215 (473)
|.|+..+.....
T Consensus 85 V~~a~~~~~~~~ 96 (101)
T 2cq1_A 85 IQYSNHKELKTS 96 (101)
T ss_dssp EEECSCSSCCCC
T ss_pred EEEcCcccCcCC
Confidence 999987665543
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=6.6e-17 Score=137.89 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=80.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987543
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2e-17 Score=133.19 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999874 688999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98644
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-18 Score=138.69 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+|+++|.++|++||+|..|.|+.+.. |.++|||||+|.+.++|.+||. ++|..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 568999999999999999999999999999999999987 9999999999999999999998 99999999999999865
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-18 Score=142.15 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCc-cEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPI-KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v-~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...+.++|||+|||+.+|+++|.++|+.||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 899999999999999999999986 999999999999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998753
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=141.30 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHH----HHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
..+.++|||+|||+.+++++|+ .+|++||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4568899999999999998865 7999999999988754 58899999999999999999999999999999999
Q ss_pred EEeeecCC
Q 011980 203 LVDVERGR 210 (473)
Q Consensus 203 ~V~~a~~~ 210 (473)
.|.|+...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99999754
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=138.72 Aligned_cols=83 Identities=28% Similarity=0.479 Sum_probs=74.8
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccC-CCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDK-ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~-~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
.....++|||+|||+.+++++|..+|+.|| |..|.|+.+. .+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345689999999999999999999999999 9999999988 68999999999999999999999 89999999999999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
+++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998754
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=135.86 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCC-ccEEEec-ccCCCCCCceeEEEEeechHHHHHHHHHcC--CceeCCEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGP-IKRVRLV-TDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVL 203 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~-~d~~tg~~kg~afVef~~~~~a~~Al~~l~--g~~i~gr~l~ 203 (473)
.+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+..+|.++|||||+|.+.++|.+||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EeeecCCCC
Q 011980 204 VDVERGRTV 212 (473)
Q Consensus 204 V~~a~~~~~ 212 (473)
|.|+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987544
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=9.9e-18 Score=129.73 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=72.1
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++ |||..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999889999999999999999999997 9999999999999875
No 83
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=144.21 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=78.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccE--EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc----eeCCE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKR--VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR----KLDGR 200 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~----~i~gr 200 (473)
..+.++|||+|||+.+|+++|.++|++||.|.. |.|+.++.||.++|||||+|.+. +|.+||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457889999999999999999999999999966 99999999999999999999999 999999999999 99999
Q ss_pred EEEEeeecCC
Q 011980 201 RVLVDVERGR 210 (473)
Q Consensus 201 ~l~V~~a~~~ 210 (473)
.|.|+++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999864
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.5e-17 Score=139.53 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=76.3
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|+++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 469999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred C
Q 011980 210 R 210 (473)
Q Consensus 210 ~ 210 (473)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=133.16 Aligned_cols=81 Identities=31% Similarity=0.554 Sum_probs=73.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|+.+|++||.| .|+.+ .++.++|||||+|.+.++|++||..|||..|+|+.|.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999977 56665 5789999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98754
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=136.47 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=75.3
Q ss_pred CCCCCcEEEEccCCCCC------CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 126 SGDPYKTLFVARLSYET------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~------te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
.....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|.+||..|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34467899999999999 789999999999999999988 4579999999999999999999999999999999
Q ss_pred E-EEEEeeecC
Q 011980 200 R-RVLVDVERG 209 (473)
Q Consensus 200 r-~l~V~~a~~ 209 (473)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=137.54 Aligned_cols=83 Identities=36% Similarity=0.689 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=6.2e-17 Score=143.95 Aligned_cols=85 Identities=33% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98643
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-18 Score=135.67 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=76.6
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred c
Q 011980 208 R 208 (473)
Q Consensus 208 ~ 208 (473)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=148.79 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=79.0
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+++++|.++|+.||.|..+.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
|++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.1e-17 Score=128.56 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.+.-|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|.+|++.|||..|.|+.|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999864 68999999999999999999999999999999999984
No 92
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=132.65 Aligned_cols=85 Identities=36% Similarity=0.621 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 124 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
.....+.++|||+|||+.+|+++|.++|+.|+ .|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44456789999999999999999999999774 677888888899999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 011980 204 VDVERGRT 211 (473)
Q Consensus 204 V~~a~~~~ 211 (473)
|+|+.++.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998643
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=140.19 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=74.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..+.+..+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44679999999999999999999999999984333222223688999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986543
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=140.11 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=76.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|+|+.|.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44688999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred e
Q 011980 207 E 207 (473)
Q Consensus 207 a 207 (473)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 95
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.6e-17 Score=154.74 Aligned_cols=87 Identities=28% Similarity=0.476 Sum_probs=81.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||..+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 011980 209 GRTVPNW 215 (473)
Q Consensus 209 ~~~~~~~ 215 (473)
+...+..
T Consensus 204 ~~~~~~~ 210 (216)
T 2qfj_A 204 TPPMPLL 210 (216)
T ss_dssp SCSSTTS
T ss_pred CCCCCCC
Confidence 7654443
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=137.18 Aligned_cols=83 Identities=14% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC--ceeCCEEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVL 203 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g--~~i~gr~l~ 203 (473)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|++ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3557899999999999999999999999999999999874 68999999999999999998874 689999999
Q ss_pred EeeecCCCCCC
Q 011980 204 VDVERGRTVPN 214 (473)
Q Consensus 204 V~~a~~~~~~~ 214 (473)
|.|+..+....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765543
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.8e-17 Score=143.70 Aligned_cols=85 Identities=33% Similarity=0.576 Sum_probs=80.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98644
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=1.8e-17 Score=156.63 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCC--CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYG--PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..++|||+||++.||+++|+++|++|| .|+.|.|+.++.|++++|||||+|.+.++|++||+.|||+.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=7.7e-18 Score=135.18 Aligned_cols=81 Identities=27% Similarity=0.574 Sum_probs=74.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+..|||..|+|+.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999865
Q ss_pred CC
Q 011980 211 TV 212 (473)
Q Consensus 211 ~~ 212 (473)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 100
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=6.5e-17 Score=135.05 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
...++|||+|||+.+++++|+++|++|| .|..+.|+. ..++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 999998864 35789999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+..
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-17 Score=134.33 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|+++|+.|| |+.|.|+.++ +++++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45678999999999999999999999999 4599999998 89999999999999999999995 899999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8753
No 102
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.2e-17 Score=153.15 Aligned_cols=139 Identities=18% Similarity=0.303 Sum_probs=98.7
Q ss_pred ChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCC-------------C---CCCCCCCCCcEEE
Q 011980 72 GMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPH-------------N---DPNVSGDPYKTLF 134 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~l~ 134 (473)
.+..+|..|+.+..+.+. ...++..+++.++.+...+.+..++...... . .......+.++||
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~ 108 (196)
T 1l3k_A 29 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIF 108 (196)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEE
T ss_pred HHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEE
Confidence 355555566555444333 2223344556666666655555555431100 0 0011123468999
Q ss_pred EccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCCC
Q 011980 135 VARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 211 (473)
Q Consensus 135 V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~~ 211 (473)
|+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.++.
T Consensus 109 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 109 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp EECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred EeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 999999999999999999999999999999988899999999999999999999975 8999999999999998654
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=128.98 Aligned_cols=76 Identities=24% Similarity=0.524 Sum_probs=73.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|+ ..|+|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999986
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=131.33 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce--eCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK--LDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~--i~gr~l~V 204 (473)
..|+++|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|.+||..|++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45789999999999999999999999999999999874 36899999999999999999999864 89999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 105
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=129.09 Aligned_cols=78 Identities=23% Similarity=0.459 Sum_probs=72.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+ +|||||+|.+.++|.+||..|||..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4478899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986543
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=133.13 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC--ceeCCEE
Q 011980 125 VSGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRR 201 (473)
Q Consensus 125 ~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g--~~i~gr~ 201 (473)
....+.++|||+|||+ .+|+++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+||+.||+ ..|.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455889999999999 9999999999999999999999864 47999999999999999999886 4699999
Q ss_pred EEEeeecCC
Q 011980 202 VLVDVERGR 210 (473)
Q Consensus 202 l~V~~a~~~ 210 (473)
|.|++++..
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999999853
No 107
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=126.79 Aligned_cols=77 Identities=27% Similarity=0.535 Sum_probs=71.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+. +||||+|.+.++|.+||..|||..|+|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=132.26 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccE-EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
....++|||+|||+.+|+++|.++|..||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 6899999999999999999999986 9999999999999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 109
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-18 Score=144.93 Aligned_cols=84 Identities=30% Similarity=0.420 Sum_probs=79.1
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccE--------EEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKR--------VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--------v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
.+.++|||+|||+.+++++|..+|++||.|.. |.|+.++.++.++|||||+|.+.++|.+||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 36789999999999999999999999999998 8999998889999999999999999999999999999999
Q ss_pred EEEEEeeecCCC
Q 011980 200 RRVLVDVERGRT 211 (473)
Q Consensus 200 r~l~V~~a~~~~ 211 (473)
+.|.|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998654
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=130.53 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC--CEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD--GRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~--gr~l~V 204 (473)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998753 689999999999999999999999999 999999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
+|+.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999864
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=132.05 Aligned_cols=78 Identities=17% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
.+..
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 112
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=5.7e-18 Score=158.37 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=100.0
Q ss_pred ChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCCCC-------------CCCCCCCCcEEEEcc
Q 011980 72 GMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPHND-------------PNVSGDPYKTLFVAR 137 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~V~n 137 (473)
.+..+|..|+.+..+.++ ...+...+++.++.+.....+..++..+..... .........+|||+|
T Consensus 31 ~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~n 110 (213)
T 4f02_A 31 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN 110 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEES
T ss_pred HHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECC
Confidence 345555555555444333 223344555666666665555555544332110 001122457899999
Q ss_pred CCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 138 LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 138 L~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
||+.+|+++|.++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.++
T Consensus 111 l~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 111 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999999999999999999885 457999999999999999999999999999999999998753
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=9.5e-17 Score=135.81 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=75.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCC---ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~---v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
....++|||+|||+.+|+++|.++|+.||. |..|.|+.+.. |.++|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999886 9999999999999999999998 999999999999
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-16 Score=127.09 Aligned_cols=77 Identities=31% Similarity=0.556 Sum_probs=71.0
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcC--CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESY--GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~--G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
..+.++|||+|||+.+|+++|+.+|++| |.|..|.++ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4468899999999999999999999999 899988774 579999999999999999999999999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998654
No 115
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-17 Score=134.62 Aligned_cols=82 Identities=16% Similarity=0.346 Sum_probs=76.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee--------C
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL--------D 198 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i--------~ 198 (473)
..+.++|||+|||+.+++++|..+|..||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4467899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CEEEEEeeecC
Q 011980 199 GRRVLVDVERG 209 (473)
Q Consensus 199 gr~l~V~~a~~ 209 (473)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999874
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=136.28 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=75.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 677777789999999999999999999998 999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.++
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9764
No 117
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-17 Score=140.20 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....++|||+|||+.+|+++|..+|..||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3457899999999999999999999999999886667777789999999999999999999999 999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 118
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.3e-17 Score=131.64 Aligned_cols=78 Identities=18% Similarity=0.422 Sum_probs=71.3
Q ss_pred CCCCcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 127 GDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
..+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34788999999999 99999999999999999999984 5899999999999999999999999999999999
Q ss_pred eecCCCC
Q 011980 206 VERGRTV 212 (473)
Q Consensus 206 ~a~~~~~ 212 (473)
++.+...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9986543
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=130.23 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=71.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
....++|||+|||+.+++++|+.+|++||.|. +.|+. +.++|||||+|.+.++|++||..|||..|+|+.|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999996 66664 56789999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=2.5e-16 Score=128.45 Aligned_cols=77 Identities=17% Similarity=0.429 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 126 SGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 355789999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
+++.+.
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998753
No 121
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=131.51 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC--ceeCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG--RKLDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g--~~i~gr~l~V 204 (473)
..|.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|++ ..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457899999999999999999999999999999998753 68999999999999999998865 4599999999
Q ss_pred eeecCCCC
Q 011980 205 DVERGRTV 212 (473)
Q Consensus 205 ~~a~~~~~ 212 (473)
+|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.8e-16 Score=131.91 Aligned_cols=76 Identities=22% Similarity=0.474 Sum_probs=71.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+ +|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.+.
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9764
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=128.65 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=67.3
Q ss_pred cEEEEccCCCCC------CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE-EEE
Q 011980 131 KTLFVARLSYET------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR-RVL 203 (473)
Q Consensus 131 ~~l~V~nL~~~~------te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr-~l~ 203 (473)
++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|.+||..|||..|+|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 45799999999999999999999999999999999 887
Q ss_pred E
Q 011980 204 V 204 (473)
Q Consensus 204 V 204 (473)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=8.1e-17 Score=130.97 Aligned_cols=81 Identities=17% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHH----HHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
..+.++|||+|||+.+++++|. .+|++||.|..|.|+. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4478999999999999999999 9999999999998874 47788999999999999999999999999999999
Q ss_pred EEeeecCC
Q 011980 203 LVDVERGR 210 (473)
Q Consensus 203 ~V~~a~~~ 210 (473)
.|.|+.+.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99999764
No 125
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2e-16 Score=143.53 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=79.3
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|||..|+|+.|.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 126
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.6e-17 Score=125.90 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=71.6
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 132 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 132 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||. +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999899999999999999999999998 5899999999999875
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=128.22 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=69.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCC-ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC-ceeCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGP-IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG-RKLDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g-~~i~gr~l~V 204 (473)
..+.++|||+|||+.+|+++|..+|++||. |..+.|. ++|||||+|.+.++|.+||+.||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6655552 368999999999999999999999 9999999999
Q ss_pred eeecCCC
Q 011980 205 DVERGRT 211 (473)
Q Consensus 205 ~~a~~~~ 211 (473)
+++.+..
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998654
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=130.13 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||+|||+.+++++|..+|++||.|..|.|+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999987 357899999999999999999999999999999999987
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=127.85 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=73.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999753 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98643
No 130
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=3.4e-17 Score=146.24 Aligned_cols=81 Identities=19% Similarity=0.392 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+..+|||+|||+.+++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|++ |+|..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999998 89999999999999997
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=4.6e-16 Score=129.75 Aligned_cols=73 Identities=25% Similarity=0.516 Sum_probs=69.2
Q ss_pred CCcEEEEccCCCC-CCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 129 PYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+.++|||+|||+. +++++|+.+|++||.|..|.| ++|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5689999999999 999999999999999999988 3689999999999999999999999999999999999
Q ss_pred cC
Q 011980 208 RG 209 (473)
Q Consensus 208 ~~ 209 (473)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 132
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=129.66 Aligned_cols=76 Identities=30% Similarity=0.651 Sum_probs=71.7
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|+|+.|.|+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999875 6899999999999999999999999999999999999865
Q ss_pred C
Q 011980 211 T 211 (473)
Q Consensus 211 ~ 211 (473)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.1e-16 Score=132.85 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 447889999999999999999999999999999999865 55689999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 875
No 134
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.1e-16 Score=134.88 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE-----EE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR-----VL 203 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~-----l~ 203 (473)
..++|||+|||+.+|+++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.|||+.|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4579999999999999999999999999999999764 89999999999999999999999999988 66
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=131.63 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCCcEEEEccCCCC-CCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC--CceeCCEEEE
Q 011980 127 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGRRVL 203 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~--g~~i~gr~l~ 203 (473)
..+.++|||+|||+. +|+++|..+|++||.|..|.|+. .+|||||+|.+.++|..||+.|| +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 557899999999998 99999999999999999999964 46899999999999999999885 4669999999
Q ss_pred EeeecCCCCCC
Q 011980 204 VDVERGRTVPN 214 (473)
Q Consensus 204 V~~a~~~~~~~ 214 (473)
|.|+.......
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998654433
No 136
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.2e-17 Score=141.76 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=74.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
...++|||+|||+.+|+++|+++|++|| |+.|.|+.++. |+++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3567999999999999999999999999 77999999986 999999999999999999999 79999999999999998
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=123.45 Aligned_cols=76 Identities=25% Similarity=0.463 Sum_probs=70.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc-CCceeCCEEEEEe
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVD 205 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l-~g~~i~gr~l~V~ 205 (473)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| +|..|+|+.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999863 689999999999999999988 9999999999999
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 138
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=128.94 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+++++|..+|+.||.|..+ ..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988766 23688999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97643
No 139
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.3e-16 Score=138.18 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=75.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCC---ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~---v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...++|||+|||+.+|+++|.++|+.||. |..|.|+.++. |.++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred eeecC
Q 011980 205 DVERG 209 (473)
Q Consensus 205 ~~a~~ 209 (473)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98754
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=125.73 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||+|||+.+|+++|..+|++||.|..| +.+..++. ||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 56799999999999999999999999999987 55555555 99999999999999999 99999999999999886
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=123.84 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+. +||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9764
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=9.6e-17 Score=143.34 Aligned_cols=82 Identities=24% Similarity=0.437 Sum_probs=77.2
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC--EEEE
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVL 203 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g--r~l~ 203 (473)
...+.++|||+|||..+++++|..+|++||.|..+.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.| +.|.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999988 9999
Q ss_pred Eeee
Q 011980 204 VDVE 207 (473)
Q Consensus 204 V~~a 207 (473)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 143
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=130.19 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=72.4
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
..+|||+|||+.+|+++|+++|+.| .|..|.|+.+.. |.++|||||+|.+.++|++|| .||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 5799999999999999999999999 899999999976 999999999999999999999 6999999999999988754
No 144
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.4e-16 Score=131.55 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=71.5
Q ss_pred cEEEEccC----CCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeec----hHH----HHHHHH--HcCCce
Q 011980 131 KTLFVARL----SYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH----TRD----MKAAYK--QADGRK 196 (473)
Q Consensus 131 ~~l~V~nL----~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~----~~~----a~~Al~--~l~g~~ 196 (473)
++|||+|| |+.|++..|..+|+.||+|..|.++.|+.||.++|||||+|.+ +.. |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCEEEEEeeec
Q 011980 197 LDGRRVLVDVER 208 (473)
Q Consensus 197 i~gr~l~V~~a~ 208 (473)
|+|+.|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 145
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=1.2e-16 Score=143.30 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=90.9
Q ss_pred HHhhHHHHhhhHHHHHHHHhhcCCCC-----------CCCCCCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecc
Q 011980 96 ARIHKLRLEKGAEKAAEELKKYDPHN-----------DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVT 164 (473)
Q Consensus 96 ~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~ 164 (473)
.+++.++.+...+.+..++ .+.... .........++|||+|||+.+|+++|.++|++||.|..|.|+.
T Consensus 50 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 128 (172)
T 2g4b_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 128 (172)
T ss_dssp TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe
Confidence 3556666666666655555 333211 1112233468999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 165 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 165 d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 129 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9888999999999999999999999999999999999999987
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=132.98 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCC---ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGP---IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~---v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
....++|||+|||+.+|+++|..+|+.||. |..|.|+.+.. |.++|||||+|.+.++|.+||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998764
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=4.5e-16 Score=145.44 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=77.5
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..|.++|||+|||+.+|+++|.++|++||+|..|.|+.++.|+.++|||||+|.+.++|.+||..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=139.85 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEE--Eeccc---CCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRV--RLVTD---KETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 201 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v--~i~~d---~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~ 201 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..+ .++.+ ..+|.++|||||+|.+.++|.+||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4578999999999999999999999999999874 11111 236899999999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011980 202 VLVDVERGR 210 (473)
Q Consensus 202 l~V~~a~~~ 210 (473)
|.|.++.+.
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 149
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=123.19 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|| .+|+++|..+|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999884 4678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 011980 207 ERGRTV 212 (473)
Q Consensus 207 a~~~~~ 212 (473)
+.+...
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 986543
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=128.03 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCCCCcEEEE--ccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee-----C
Q 011980 126 SGDPYKTLFV--ARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL-----D 198 (473)
Q Consensus 126 ~~~~~~~l~V--~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i-----~ 198 (473)
...|+.+||| |||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3457889999 77999999999999999999999998864 268999999999999999999999998 7
Q ss_pred CEEEEEeeecCC
Q 011980 199 GRRVLVDVERGR 210 (473)
Q Consensus 199 gr~l~V~~a~~~ 210 (473)
|.+|.|.|+...
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 899999998753
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=129.29 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=71.1
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||+|||+.+++++|..+|++||.|..|.|+. .+|||||+|.+.++|..||..|||..|+|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 56899999999999999999999999999999999997
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3.4e-16 Score=128.59 Aligned_cols=79 Identities=23% Similarity=0.517 Sum_probs=74.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+++++|..+|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999998 89999999999999999999997 9999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.4e-16 Score=141.90 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=75.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE--EEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR--VLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~--l~V 204 (473)
..+..+|||+|||+.+++++|..+|++||.|..+.|+.+..+|.++|||||+|.+.++|.+|++.|||..|+|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345789999999999999999999999999999999999888999999999999999999999999999999965 888
Q ss_pred eee
Q 011980 205 DVE 207 (473)
Q Consensus 205 ~~a 207 (473)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=9.7e-16 Score=135.08 Aligned_cols=79 Identities=32% Similarity=0.621 Sum_probs=73.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6e-16 Score=131.59 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCc----cEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPI----KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v----~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
..++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 56799999999999999999999999975 689999885 799999999999999999999985 999999999999
Q ss_pred eeecC
Q 011980 205 DVERG 209 (473)
Q Consensus 205 ~~a~~ 209 (473)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.4e-15 Score=133.80 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=77.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred C
Q 011980 210 R 210 (473)
Q Consensus 210 ~ 210 (473)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=123.39 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEE-EecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRV-RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v-~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
...++|||+|||+.+++++|..+|++||.|..| .|+.++.+ +.|||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 58876654 3499999999999999999999999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2e-15 Score=134.75 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 159
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=1.4e-15 Score=148.79 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=103.3
Q ss_pred CChHHHHhhcC-CCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCC-----------CCC-------CCCCCCc
Q 011980 71 TGMAQFVSHFA-EPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHN-----------DPN-------VSGDPYK 131 (473)
Q Consensus 71 ~~~~~~~~~f~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~ 131 (473)
..+..+|..|+ .+..+.+........+++.++.+.....+..++..+.... .+. ....+.+
T Consensus 132 ~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~ 211 (292)
T 2ghp_A 132 RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGR 211 (292)
T ss_dssp HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTT
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCc
Confidence 34667777787 7766666544445566777777666666666555333211 000 2234678
Q ss_pred EEEEccCCCC-CCHHHHHHHHhcCCCccEEEecccCC-CCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 132 TLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKE-TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 132 ~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~-tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
+|||+|||+. +++++|..+|+.||.|..|.|+.+.. ||.++|||||+|.+.++|.+|| .|||..|+|+.|.|.|+.+
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 9999999999 99999999999999999999999876 6999999999999999999999 9999999999999999986
Q ss_pred C
Q 011980 210 R 210 (473)
Q Consensus 210 ~ 210 (473)
+
T Consensus 291 k 291 (292)
T 2ghp_A 291 K 291 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=6.1e-16 Score=139.35 Aligned_cols=133 Identities=21% Similarity=0.270 Sum_probs=98.7
Q ss_pred ChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCC-------------CCCCCCCCCCCcEEEEccC
Q 011980 72 GMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDP-------------HNDPNVSGDPYKTLFVARL 138 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~V~nL 138 (473)
.+..+|..|+.+....+....+...+++.++.+...+.+..+++ +.. .........+.++|||+||
T Consensus 29 ~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nl 107 (175)
T 1fje_B 29 ELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNL 107 (175)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESC
T ss_pred HHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCC
Confidence 34555655554433334444455566777777666666555552 221 1111222345789999999
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 139 SYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 139 ~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
|+.+|+++|..+|+.||.|..+ ..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.++
T Consensus 108 p~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 108 SFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999988765 446889999999999999999999999999999999999999764
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.9e-15 Score=120.69 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
..++|||+|||+.+++++|+.+|++| .|..|.|. .++|||||+|.+.++|.+||..|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 468999999999999999999999999999999999987
Q ss_pred CC
Q 011980 209 GR 210 (473)
Q Consensus 209 ~~ 210 (473)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=3.1e-16 Score=140.81 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=72.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC---CEEEEEe
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRVLVD 205 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~---gr~l~V~ 205 (473)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||+.|||..+. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 57899999999999999999999999999999999986 5899999999999999999999999998775 4999999
Q ss_pred ee
Q 011980 206 VE 207 (473)
Q Consensus 206 ~a 207 (473)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.2e-15 Score=130.06 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCcc--EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIK--RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...++|||+|||+.+|+++|+++|+.| .|+ .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 457899999999999999999999999 677 899999987 9999999999999999999998 57899999999998
Q ss_pred eecC
Q 011980 206 VERG 209 (473)
Q Consensus 206 ~a~~ 209 (473)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=5.3e-15 Score=135.69 Aligned_cols=84 Identities=29% Similarity=0.496 Sum_probs=79.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=119.12 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=65.6
Q ss_pred CCcE-EEEccCCCCCCHHH----HHHHHhcC-CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 129 PYKT-LFVARLSYETTESK----IKREFESY-GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 129 ~~~~-l~V~nL~~~~te~~----L~~~F~~~-G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
|+.| |||+|||+.+++++ |.++|++| |+|..| |+ |||||+|.+.++|..|++.|||..|.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 5666 99999999999988 56899999 599887 34 999999999999999999999999999999
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
.|.|++...
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999998643
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=3.9e-15 Score=131.88 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC--EEEEEee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG--RRVLVDV 206 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g--r~l~V~~ 206 (473)
...+|||+||++.+|+++|.++|++||.|..|.|+.. .++|||||+|.+.++|+.|++.|||..|.| +.|.|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467999999999999999999999999999998642 357899999999999999999999999965 9999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98754
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=8.1e-15 Score=121.13 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=74.1
Q ss_pred CCCCCcEEEEccCCC-----CCCHHHHHHHHhcCCCccEEEecccCCC-CCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 126 SGDPYKTLFVARLSY-----ETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~-----~~te~~L~~~F~~~G~v~~v~i~~d~~t-g~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
...++++|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 345889999999963 2378999999999999999999988654 6889999999999999999999999999999
Q ss_pred EEEEEeeecC
Q 011980 200 RRVLVDVERG 209 (473)
Q Consensus 200 r~l~V~~a~~ 209 (473)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 168
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.8e-15 Score=122.81 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=68.7
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCC---CCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEE
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET---NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 204 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~t---g~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V 204 (473)
...++|||+|||+.+|+++|.++|++||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .|+|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 888888777 7999999999999999999999984 377777776
Q ss_pred eeec
Q 011980 205 DVER 208 (473)
Q Consensus 205 ~~a~ 208 (473)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=7.4e-15 Score=125.34 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCcee-EEEEeechHHHHHHHHHcCCceeCC--EEEEEe
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGY-AFIEYMHTRDMKAAYKQADGRKLDG--RRVLVD 205 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~-afVef~~~~~a~~Al~~l~g~~i~g--r~l~V~ 205 (473)
....|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|.+|++.|||..|.| +.|.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4567889999999999999999999999999988753 3578 9999999999999999999999988 899999
Q ss_pred eecCCC
Q 011980 206 VERGRT 211 (473)
Q Consensus 206 ~a~~~~ 211 (473)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998754
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=6.1e-15 Score=118.14 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=62.7
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce--eCCEEEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK--LDGRRVLV 204 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~--i~gr~l~V 204 (473)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 447889999999999999999999999999999999864 68999999999999883 45544 56999999
Q ss_pred eeecCC
Q 011980 205 DVERGR 210 (473)
Q Consensus 205 ~~a~~~ 210 (473)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998764
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=118.52 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=65.8
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 207 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a 207 (473)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999864 68999999999999976532 134569999999998
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=123.44 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=67.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCcee-EEEEeechHHHHHHHHHcCCceeCC--EEEEEeee
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGY-AFIEYMHTRDMKAAYKQADGRKLDG--RRVLVDVE 207 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~-afVef~~~~~a~~Al~~l~g~~i~g--r~l~V~~a 207 (473)
..|||+||++.+|+++|..+|++||.|..|.|+. + .|| |||+|.+.++|..|++.|||..|.| ..|.|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3468999999999999999999999999999864 2 276 9999999999999999999999987 69999999
Q ss_pred cCCC
Q 011980 208 RGRT 211 (473)
Q Consensus 208 ~~~~ 211 (473)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8754
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=8.5e-15 Score=134.10 Aligned_cols=83 Identities=29% Similarity=0.583 Sum_probs=77.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34678999999999999999999999999999999999998999999999999999999999975 99999999999999
Q ss_pred ecCC
Q 011980 207 ERGR 210 (473)
Q Consensus 207 a~~~ 210 (473)
+...
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8653
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=7.7e-15 Score=124.56 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=70.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|| .+|+++|..+|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999885 4679999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98654
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1.2e-14 Score=134.94 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCCcEEEEccCC-CCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 128 DPYKTLFVARLS-YETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~-~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
.++++|||+||+ +.+++++|..+|++||.|..|.|+.+ .+|||||+|.+.++|..||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 367899999999 89999999999999999999999864 369999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=9.8e-15 Score=115.97 Aligned_cols=71 Identities=23% Similarity=0.482 Sum_probs=65.9
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcC----C-------CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
+.++|||+|||+.+++++|..+|++| | .|..+.++.+ +|||||+|.+.++|.+|| .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 8999988653 689999999999999999 9999999
Q ss_pred CCEEEEEee
Q 011980 198 DGRRVLVDV 206 (473)
Q Consensus 198 ~gr~l~V~~ 206 (473)
+|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999873
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=4.6e-15 Score=144.42 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=105.5
Q ss_pred CChHHHHhhcCCCCCCCCC-CchhHHHHhhHHHHhhhHHHHHHHHhhcCCC--------------CCCCCCCCCCcEEEE
Q 011980 71 TGMAQFVSHFAEPGDPLYA-PPVERRARIHKLRLEKGAEKAAEELKKYDPH--------------NDPNVSGDPYKTLFV 135 (473)
Q Consensus 71 ~~~~~~~~~f~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~V 135 (473)
..+..+|..|+.+..+.+. ...++..++++++.+.....+..++..+... ........+.++|||
T Consensus 110 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v 189 (284)
T 3smz_A 110 QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCV 189 (284)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEE
T ss_pred HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEE
Confidence 3466677777766554433 2234445556666666655555555433321 111223346789999
Q ss_pred ccCCCCC-CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCCC
Q 011980 136 ARLSYET-TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 211 (473)
Q Consensus 136 ~nL~~~~-te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~~ 211 (473)
+|||+.+ ++++|..+|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.+..
T Consensus 190 ~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 190 DRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp ECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred ecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999995 999999999999999999999887 69999999999999999999999999999999999999997643
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-14 Score=127.43 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=74.3
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
++|||+|||+.+|+++|.++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999998874 789999999999999999999999999999999999998754
Q ss_pred C
Q 011980 211 T 211 (473)
Q Consensus 211 ~ 211 (473)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=1.3e-14 Score=140.97 Aligned_cols=76 Identities=26% Similarity=0.413 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CEEEEEee
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVDV 206 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr~l~V~~ 206 (473)
.+.++|||+|||..+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 357899999999999999999999999999999998543 589999999999999999999999999 99999999
Q ss_pred ec
Q 011980 207 ER 208 (473)
Q Consensus 207 a~ 208 (473)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=8.8e-15 Score=138.16 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CEEEEEe
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 205 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr~l~V~ 205 (473)
.+.++|||+|||+.+++++|.++|++|| .|..|.|+.. .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999999653 3689999999999999999999999999 9999999
Q ss_pred eecCC
Q 011980 206 VERGR 210 (473)
Q Consensus 206 ~a~~~ 210 (473)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=1.5e-14 Score=134.49 Aligned_cols=81 Identities=30% Similarity=0.523 Sum_probs=73.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35699999999999999999999999999999999998889999999999999999999999999999999999998865
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
.
T Consensus 107 ~ 107 (216)
T 2qfj_A 107 N 107 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=2.8e-14 Score=138.85 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=79.8
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 011980 207 ERGRT 211 (473)
Q Consensus 207 a~~~~ 211 (473)
+.+..
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 87643
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3e-14 Score=126.92 Aligned_cols=79 Identities=22% Similarity=0.488 Sum_probs=73.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999984 678999999998875
Q ss_pred C
Q 011980 209 G 209 (473)
Q Consensus 209 ~ 209 (473)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=5e-14 Score=129.50 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=71.7
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 209 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~ 209 (473)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999886 4889999999999999999999755 5699999999998764
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=1.5e-14 Score=139.28 Aligned_cols=133 Identities=19% Similarity=0.265 Sum_probs=99.0
Q ss_pred ChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCCC-----CCCCCCCCcEEEEccCCCCCCHHH
Q 011980 72 GMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHND-----PNVSGDPYKTLFVARLSYETTESK 146 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~V~nL~~~~te~~ 146 (473)
.+..+|..|+.+..+.+. ..+++.++.+.....+..++..+..... ......+..+|||+|||+.+|+++
T Consensus 38 ~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~ 112 (261)
T 3sde_A 38 DFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNEL 112 (261)
T ss_dssp HHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHH
T ss_pred HHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHH
Confidence 455666666665544332 2245666666666665555554433211 011134678999999999999999
Q ss_pred HHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc-CCceeC---CEEEEEeeecCC
Q 011980 147 IKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLD---GRRVLVDVERGR 210 (473)
Q Consensus 147 L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l-~g~~i~---gr~l~V~~a~~~ 210 (473)
|..+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..| ++..+. +++|.|.++...
T Consensus 113 l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 113 LEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999 47999999999999999999999999 455555 999999998753
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1e-13 Score=134.63 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCCCcEEEEccCCCCCCHHHHH----HHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 127 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
..+.++|||+|||+.+|+++|+ ++|+.||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578999999999999999966 8999999999999886 68899999999999999999999999999999999
Q ss_pred EEeeecCC
Q 011980 203 LVDVERGR 210 (473)
Q Consensus 203 ~V~~a~~~ 210 (473)
.|.|+...
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998754
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=5.3e-14 Score=132.75 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCCCCCCCcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEE
Q 011980 123 PNVSGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 201 (473)
Q Consensus 123 ~~~~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~ 201 (473)
+.....+.++|||+|||+ .+++++|.++|+.||.|..|.|+.+. +|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344456789999999999 99999999999999999999998764 689999999999999999999999999999
Q ss_pred EEEeeecCC
Q 011980 202 VLVDVERGR 210 (473)
Q Consensus 202 l~V~~a~~~ 210 (473)
|.|.++...
T Consensus 102 l~v~~a~~~ 110 (229)
T 2adc_A 102 IRITLSKHQ 110 (229)
T ss_dssp CEEECCSCC
T ss_pred EEEEEecCc
Confidence 999998754
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=5.2e-14 Score=126.19 Aligned_cols=82 Identities=16% Similarity=0.355 Sum_probs=74.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCC--CCceeEEEEeechHHHHHHHHHcCCceeC---CEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN--KPRGYAFIEYMHTRDMKAAYKQADGRKLD---GRRVL 203 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg--~~kg~afVef~~~~~a~~Al~~l~g~~i~---gr~l~ 203 (473)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+||+.|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998876 88999999999999999999999998775 57778
Q ss_pred EeeecCC
Q 011980 204 VDVERGR 210 (473)
Q Consensus 204 V~~a~~~ 210 (473)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8776643
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.8e-13 Score=113.18 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCC-----------HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCC
Q 011980 126 SGDPYKTLFVARLSYETT-----------ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADG 194 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~t-----------e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g 194 (473)
.+.++++|+|.||..... +++|.++|++||.|..|.| .+. .++|||||+|.+.++|.+||..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 455789999999944332 5799999999999999966 443 3789999999999999999999999
Q ss_pred ceeCCEEEEEeeecCC
Q 011980 195 RKLDGRRVLVDVERGR 210 (473)
Q Consensus 195 ~~i~gr~l~V~~a~~~ 210 (473)
..|+|+.|.|.++.+.
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 9999999999998764
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=129.31 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC-CEEEEEe
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD-GRRVLVD 205 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~-gr~l~V~ 205 (473)
.+.++|||+|||+.+++++|.++|+.|| .|..|.|+.+ .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4588999999999999999999999999 9999999753 2689999999999999999999999999 9999999
Q ss_pred eecCC
Q 011980 206 VERGR 210 (473)
Q Consensus 206 ~a~~~ 210 (473)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99753
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=2.4e-14 Score=139.95 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=96.3
Q ss_pred ChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCC----CCCCCCCCCcEEEEccCCCCCCHHHH
Q 011980 72 GMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHN----DPNVSGDPYKTLFVARLSYETTESKI 147 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~V~nL~~~~te~~L 147 (473)
.+..+|..|+.+..+.+...... .+++.++.+...+.+..++. +.... ...+.....++|||+|||+.+++++|
T Consensus 57 ~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l 134 (292)
T 2ghp_A 57 KVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNI 134 (292)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCSCEEEEECCCTTCCHHHH
T ss_pred HHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHH
Confidence 45556666665544433321111 24566666666666666653 32211 11222346889999999999999999
Q ss_pred HHHHhcCC-CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeecCC
Q 011980 148 KREFESYG-PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 210 (473)
Q Consensus 148 ~~~F~~~G-~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~~~ 210 (473)
..+|..|| .|..|.|+.+.. |.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.+.
T Consensus 135 ~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 135 RDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 99999999 999999998875 888999999999999999999999999999999999998754
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=4.7e-14 Score=133.04 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=70.7
Q ss_pred CCCCcEEEEccCCCCC---------CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 127 GDPYKTLFVARLSYET---------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~---------te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
....++|||+||+..+ ++++|..+|++||+|..|.|+. .+|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999985 378999999999999999999999999
Q ss_pred ------------CCEEEEEeeecCCCCC
Q 011980 198 ------------DGRRVLVDVERGRTVP 213 (473)
Q Consensus 198 ------------~gr~l~V~~a~~~~~~ 213 (473)
.|+.|.|.||...+.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999865433
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2e-13 Score=112.67 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCCCcEEEEccC--CCCCC--------HHHHHHHHhcCCCccEEEecccCCC--CCCceeEEEEeechHHHHHHHHHcCC
Q 011980 127 GDPYKTLFVARL--SYETT--------ESKIKREFESYGPIKRVRLVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADG 194 (473)
Q Consensus 127 ~~~~~~l~V~nL--~~~~t--------e~~L~~~F~~~G~v~~v~i~~d~~t--g~~kg~afVef~~~~~a~~Al~~l~g 194 (473)
+.|+++|+|.|+ +..+. +++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 347889999997 32332 3689999999999999999988754 36789999999999999999999999
Q ss_pred ceeCCEEEEEeeecC
Q 011980 195 RKLDGRRVLVDVERG 209 (473)
Q Consensus 195 ~~i~gr~l~V~~a~~ 209 (473)
..|+|+.|.|.+...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.44 E-value=1.6e-13 Score=127.35 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=70.3
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCc--cEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCE----E
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPI--KRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR----R 201 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v--~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr----~ 201 (473)
.|..+|||+|||+.+|+++|.++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 899998765 55679999999999999999999999999886 5
Q ss_pred EEEeee
Q 011980 202 VLVDVE 207 (473)
Q Consensus 202 l~V~~a 207 (473)
|.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.44 E-value=6.7e-14 Score=125.85 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 126 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
...+.++|||+|||+.+|+++|..+|..||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3557899999999999999999999999998766 344455578899999999999999999995 99999999999999
Q ss_pred eecCC
Q 011980 206 VERGR 210 (473)
Q Consensus 206 ~a~~~ 210 (473)
++...
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=124.86 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=71.8
Q ss_pred CcEEEEccCCC-CCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEeeec
Q 011980 130 YKTLFVARLSY-ETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 208 (473)
Q Consensus 130 ~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~a~ 208 (473)
.++|||+|||+ .+++++|..+|+.||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 6899999999999999999999999999999999987
Q ss_pred CCC
Q 011980 209 GRT 211 (473)
Q Consensus 209 ~~~ 211 (473)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=4.7e-13 Score=112.78 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=70.7
Q ss_pred CCcEEEEccCCC--CC---CHHHHHHHHhcCCCccEEEecccCC----CCCCceeEEEEeechHHHHHHHHHcCCceeCC
Q 011980 129 PYKTLFVARLSY--ET---TESKIKREFESYGPIKRVRLVTDKE----TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 199 (473)
Q Consensus 129 ~~~~l~V~nL~~--~~---te~~L~~~F~~~G~v~~v~i~~d~~----tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g 199 (473)
|+++|+|.|+-. .+ .+++|.++|++||+|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999832 22 3688999999999999999998864 35678999999999999999999999999999
Q ss_pred EEEEEeeecC
Q 011980 200 RRVLVDVERG 209 (473)
Q Consensus 200 r~l~V~~a~~ 209 (473)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.2e-13 Score=113.85 Aligned_cols=72 Identities=13% Similarity=0.384 Sum_probs=64.1
Q ss_pred EccCCCCCCHHHHHHHH------------hcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 135 VARLSYETTESKIKREF------------ESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 135 V~nL~~~~te~~L~~~F------------~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
+.||++.+++++|.++| ++||.|..|.|+.+.. +.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 9999999999998764 7899999999999999999999999999999999
Q ss_pred EEeee
Q 011980 203 LVDVE 207 (473)
Q Consensus 203 ~V~~a 207 (473)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=7.1e-13 Score=127.59 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=71.2
Q ss_pred CCCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEee
Q 011980 127 GDPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 206 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~~ 206 (473)
..+.++|||+|||+.+|+++|..+|+.||.|..|.|.. .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34578999999999999999999999999999999864 368999999999999999999999999999999999
Q ss_pred ecC
Q 011980 207 ERG 209 (473)
Q Consensus 207 a~~ 209 (473)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.34 E-value=2e-12 Score=118.34 Aligned_cols=75 Identities=20% Similarity=0.402 Sum_probs=65.7
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCC-----------CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYG-----------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G-----------~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
..++|||+|||+.+|+++|.++|+.|| .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4444444 556899999999999999999 8999999
Q ss_pred CCEEEEEeeecCC
Q 011980 198 DGRRVLVDVERGR 210 (473)
Q Consensus 198 ~gr~l~V~~a~~~ 210 (473)
+|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=1.8e-12 Score=115.84 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=66.4
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcC----C-------CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
+.++|||+|||+.+|+++|.++|++| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 6666665 345799999999999999999 8999999
Q ss_pred CCEEEEEeeecCC
Q 011980 198 DGRRVLVDVERGR 210 (473)
Q Consensus 198 ~gr~l~V~~a~~~ 210 (473)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.7e-12 Score=127.33 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=68.0
Q ss_pred CCCCCCCCcEEEEcc--CCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee---
Q 011980 123 PNVSGDPYKTLFVAR--LSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL--- 197 (473)
Q Consensus 123 ~~~~~~~~~~l~V~n--L~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i--- 197 (473)
......|+.+|||+| |++.+|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||..+
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 445577899999999 578999999999999999999987753 469999999999999999999999987
Q ss_pred CCE--EEEEeeec
Q 011980 198 DGR--RVLVDVER 208 (473)
Q Consensus 198 ~gr--~l~V~~a~ 208 (473)
.|+ .|.|.|+.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 244 56777653
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-11 Score=100.42 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=62.7
Q ss_pred CcEEEEccCC-------CCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEE
Q 011980 130 YKTLFVARLS-------YETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 202 (473)
Q Consensus 130 ~~~l~V~nL~-------~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l 202 (473)
...|.|.-.. ..+++++|..+|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4456665432 468999999999999999999987 46789999999999999999997655 679999
Q ss_pred EEeeecCCC
Q 011980 203 LVDVERGRT 211 (473)
Q Consensus 203 ~V~~a~~~~ 211 (473)
.|.|+....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.4e-11 Score=103.02 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCCCcEEEEccCCCCC----------CHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 127 GDPYKTLFVARLSYET----------TESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 127 ~~~~~~l~V~nL~~~~----------te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
+.|+++|.|.|+-... .+++|.++|++||.|..|.|..+. ++|||||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3478899999963221 135789999999999999987642 58999999999999999999999999
Q ss_pred eCCEEEEEeeec
Q 011980 197 LDGRRVLVDVER 208 (473)
Q Consensus 197 i~gr~l~V~~a~ 208 (473)
|+|+.|.|.|+.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-10 Score=91.26 Aligned_cols=74 Identities=18% Similarity=0.368 Sum_probs=63.2
Q ss_pred CCCCcEEEEccCCC----CCCH----HHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeC
Q 011980 127 GDPYKTLFVARLSY----ETTE----SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLD 198 (473)
Q Consensus 127 ~~~~~~l~V~nL~~----~~te----~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~ 198 (473)
++|.-||+|.-++. ++-. .+|...|.+||+|..++|+.+ .+||+|.+.++|.+||. |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 45778898887762 3333 568999999999999999875 38999999999999998 9999999
Q ss_pred CEEEEEeeecC
Q 011980 199 GRRVLVDVERG 209 (473)
Q Consensus 199 gr~l~V~~a~~ 209 (473)
|+.|+|+++.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-10 Score=97.15 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=69.8
Q ss_pred CCCCCCCcEEEEccCCCC-CCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeec-hHHHHHHHHHcC--CceeCC
Q 011980 124 NVSGDPYKTLFVARLSYE-TTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMH-TRDMKAAYKQAD--GRKLDG 199 (473)
Q Consensus 124 ~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~-~~~a~~Al~~l~--g~~i~g 199 (473)
.....+++.|||+||++. ++.++|+++|++||+|.+|.|+.+.. .|||.|.+ ..+|..|+..|| +..|+|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445668999999999999 99999999999999999999988654 69999999 799999999995 688999
Q ss_pred EEEEEeeec
Q 011980 200 RRVLVDVER 208 (473)
Q Consensus 200 r~l~V~~a~ 208 (473)
..+.|++..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 988888754
No 207
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.03 E-value=2.1e-09 Score=110.72 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.3
Q ss_pred hHHHHHHHHhhcC
Q 011980 106 GAEKAAEELKKYD 118 (473)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (473)
....|...+..+.
T Consensus 115 te~~L~~~F~~~G 127 (437)
T 3pgw_S 115 TESKLRREFEVYG 127 (437)
T ss_pred CHHHHHHHHHHcC
Confidence 3344555555544
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.2e-09 Score=86.36 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=63.4
Q ss_pred CCCCCcEEEEccCCCC------CCH---HHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCce
Q 011980 126 SGDPYKTLFVARLSYE------TTE---SKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 196 (473)
Q Consensus 126 ~~~~~~~l~V~nL~~~------~te---~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~ 196 (473)
.++|.-||+|.-++.. ..+ .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3668889999988642 232 4588999999999999999863 9999999999999998 99999
Q ss_pred eCCEEEEEeeec
Q 011980 197 LDGRRVLVDVER 208 (473)
Q Consensus 197 i~gr~l~V~~a~ 208 (473)
|+|+.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999864
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=5.6e-09 Score=97.64 Aligned_cols=79 Identities=20% Similarity=0.382 Sum_probs=65.5
Q ss_pred CcEEEEccCC-----CCCCHHHHHHHHhcCCCccEEEecccC----CCCCCceeEEEEeechHHHHHHHHHcCCceeCCE
Q 011980 130 YKTLFVARLS-----YETTESKIKREFESYGPIKRVRLVTDK----ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 200 (473)
Q Consensus 130 ~~~l~V~nL~-----~~~te~~L~~~F~~~G~v~~v~i~~d~----~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr 200 (473)
...|.+.|+- ..-.+++|.+.|++||.|..|.|+.+. .++.++||+||+|.+.++|.+|++.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555542 223567899999999999999998543 4558999999999999999999999999999999
Q ss_pred EEEEeeec
Q 011980 201 RVLVDVER 208 (473)
Q Consensus 201 ~l~V~~a~ 208 (473)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999864
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.1e-06 Score=68.24 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=65.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcC-----CCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESY-----GPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~-----G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
..++|-|-|||..|++..|..+++.+ |.|+.|.+..+. +-|+|+|.+...|-+|.-+|+|.+|.|+.|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 999999998875 4799999999999999888999999999999
Q ss_pred Ee
Q 011980 204 VD 205 (473)
Q Consensus 204 V~ 205 (473)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=7.7e-05 Score=59.91 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCCC-C----HHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 129 PYKTLFVARLSYET-T----ESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 129 ~~~~l~V~nL~~~~-t----e~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
-.++|+|+||+..| . .+.|+.+|..|+++..+.+... -.=..|.|.++++|.+|-..|++..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998864 2 2578999999999988777643 23578999999999999999999999999999
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999984
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.43 E-value=0.00088 Score=52.78 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=62.0
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCC--CceeEEEEeechHHHHHHHHHcCCceeC---C--EEEE
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNK--PRGYAFIEYMHTRDMKAAYKQADGRKLD---G--RRVL 203 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~--~kg~afVef~~~~~a~~Al~~l~g~~i~---g--r~l~ 203 (473)
++|.|.+||+.+|++++.+.++.+..+..+.++..+.+.+ .-.-|||.|.+.+++....+.++|+.|- | ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999998877777665544333 2367999999999999999999998863 2 2345
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|++|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 677643
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.33 E-value=0.00055 Score=54.05 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=47.4
Q ss_pred CCCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc
Q 011980 128 DPYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 192 (473)
Q Consensus 128 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l 192 (473)
.-...++| ++|..+...+|..+|+.||.| .|.++.|. .|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34566777 999999999999999999954 57777653 8999999999999999866
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00069 Score=53.64 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=45.8
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 193 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~ 193 (473)
..++| ++|+.+...+|..+|+.||. ..|.++.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999999994 467777653 89999999999999998764
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.0076 Score=48.12 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhc-----CCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEE
Q 011980 129 PYKTLFVARLSYETTESKIKREFES-----YGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVL 203 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~-----~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~ 203 (473)
...+|.|.|||+.+.++.|.-+|+. -|+|..|.... +-|+|+|.+...|+..|+ -..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4679999999999999999999987 25888887643 578999999999999985 236788888888
Q ss_pred EeeecC
Q 011980 204 VDVERG 209 (473)
Q Consensus 204 V~~a~~ 209 (473)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 876443
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0032 Score=51.90 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCC-EEEEEeee
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG-RRVLVDVE 207 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~g-r~l~V~~a 207 (473)
..+.|.|-++|+.. ...|..+|++||+|....... ...+..|.|.+..+|++||. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35678899999874 677899999999999887621 23699999999999999996 69999985 66777664
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.49 E-value=0.0052 Score=48.72 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCC--CceeEEEEeechHHHHHHHHHcCCceeCC-----EE
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNK--PRGYAFIEYMHTRDMKAAYKQADGRKLDG-----RR 201 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~--~kg~afVef~~~~~a~~Al~~l~g~~i~g-----r~ 201 (473)
.+.+|.|..||+.+|++++.+.++.+-++....++....+.+ .-.-|||.|.+.+++....+.++|..|-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999888777654443333333222222 22568999999999999999999988622 24
Q ss_pred EEEeeec
Q 011980 202 VLVDVER 208 (473)
Q Consensus 202 l~V~~a~ 208 (473)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5567663
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0083 Score=50.14 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=55.2
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccE-EEeccc------------CCCC-CCceeEEEEeechHHHHHHHHHcCCc
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKR-VRLVTD------------KETN-KPRGYAFIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d------------~~tg-~~kg~afVef~~~~~a~~Al~~l~g~ 195 (473)
...|.|-++|+. ....|..+|++||.|.. +.+... +... ...++..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 346788888766 45668889999999876 222110 0000 124578999999999999996 7999
Q ss_pred eeCCEEEEEeeec
Q 011980 196 KLDGRRVLVDVER 208 (473)
Q Consensus 196 ~i~gr~l~V~~a~ 208 (473)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988777643
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.21 E-value=0.011 Score=60.47 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=41.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHH
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 190 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~ 190 (473)
++|||. ++..+++.+|.++|++||.|..+.+-.+. ..||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 589997 78899999999999999999999876543 2799999999999987764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.42 E-value=0.021 Score=49.31 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=28.5
Q ss_pred EEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc
Q 011980 159 RVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 159 ~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~ 195 (473)
.+.|+.+. ..++|||||+|.+.+.|++||+.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 468999999999999999999887764
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.86 E-value=0.016 Score=49.77 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=36.6
Q ss_pred CCCceeEEEEeechHHHHHHHHHc-CCceeCCEEEEEeeecC
Q 011980 169 NKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVDVERG 209 (473)
Q Consensus 169 g~~kg~afVef~~~~~a~~Al~~l-~g~~i~gr~l~V~~a~~ 209 (473)
...+|+++|+|.+.+.|++||+.| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 9999999 999998764
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=90.83 E-value=0.0058 Score=50.19 Aligned_cols=74 Identities=8% Similarity=0.049 Sum_probs=23.3
Q ss_pred ChHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCC-------------------CCCCCCCCCcE
Q 011980 72 GMAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHN-------------------DPNVSGDPYKT 132 (473)
Q Consensus 72 ~~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 132 (473)
.+.++|..|+.+..+.+.... ...++++++.+...+.+..++..+.... .........++
T Consensus 21 ~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~ 99 (115)
T 4f25_A 21 ALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 99 (115)
T ss_dssp HHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--------------
T ss_pred HHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCc
Confidence 455556666655544433221 1235566666666555555554332210 00111223567
Q ss_pred EEEccCCCCCCHHH
Q 011980 133 LFVARLSYETTESK 146 (473)
Q Consensus 133 l~V~nL~~~~te~~ 146 (473)
|||+|||+.+|++.
T Consensus 100 lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 100 VYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------
T ss_pred eEeCCCCCCccccc
Confidence 99999999998764
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.33 E-value=0.98 Score=46.81 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=45.6
Q ss_pred CcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcC
Q 011980 130 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 193 (473)
Q Consensus 130 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~ 193 (473)
...++|+ +|..+...+|..+|+.||.| .|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 88889999999999999954 6766654 379999999999999998874
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.18 E-value=4.3 Score=29.97 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=42.3
Q ss_pred EEEEcc-CCCCCCHHHHHHHHhcCCC-----ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCceeCCEEEEEe
Q 011980 132 TLFVAR-LSYETTESKIKREFESYGP-----IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 205 (473)
Q Consensus 132 ~l~V~n-L~~~~te~~L~~~F~~~G~-----v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i~gr~l~V~ 205 (473)
+|||.. --..+...+|..+|..-+. |-.|.|.. .|.||+... ..|..++..|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566632 2334667778877775443 44555542 489999865 45788889999999999999988
Q ss_pred eec
Q 011980 206 VER 208 (473)
Q Consensus 206 ~a~ 208 (473)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.71 E-value=28 Score=26.58 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCcEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc
Q 011980 129 PYKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 192 (473)
Q Consensus 129 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l 192 (473)
..|-|-|-|+|..+-..++.-.....|---.|..+ -|.|.|.|.+.+....||+.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 46778899999999999888888888865566554 368999999999988888775
No 226
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=58.36 E-value=0.87 Score=36.54 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=42.4
Q ss_pred hHHHHhhcCCCCCCCCCCchhHHHHhhHHHHhhhHHHHHHHHhhcCCCCCCCCCCCCCcEEEEc---------cCCCCCC
Q 011980 73 MAQFVSHFAEPGDPLYAPPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVA---------RLSYETT 143 (473)
Q Consensus 73 ~~~~~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~---------nL~~~~t 143 (473)
+..+|..|+.+..+.+.. ....+++.++.+.....+..++..+..... .+..|.|. +++...+
T Consensus 25 l~~~F~~~G~v~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~------~g~~l~v~~a~~~~~~~~~~~~~~ 96 (115)
T 3lqv_A 25 MYDIFGKYGPIRQIRVGN--TPETRGTAYVVYEDIFDAKNAVDHLSGFNV------SNRYLVVLYYNANRAFQKMDTKKK 96 (115)
T ss_dssp HHHHHHTTSCEEEEEEEC--STTTTTCEEEEESSHHHHHHHHHHHTTCBS------SSCBCEEEECCHHHHTTTSCHHHH
T ss_pred HHHHHHhcCCeEEEEEee--CCCCCcEEEEEECCHHHHHHHHHHcCCCEE------CCeEEEEEEecCChhhhhhhHhHh
Confidence 445555555544433321 122355666666666665555555443211 23344442 4566678
Q ss_pred HHHHHHHHhcCCC
Q 011980 144 ESKIKREFESYGP 156 (473)
Q Consensus 144 e~~L~~~F~~~G~ 156 (473)
+++|..+|++||.
T Consensus 97 ~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 97 EEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 8999999999984
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.16 E-value=96 Score=26.80 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=36.6
Q ss_pred EEEEccCCC-C--------CCHHHHHHHH--hcCCCccEEEecccCCCCCCceeEEEEeec-hHHHHHHHH
Q 011980 132 TLFVARLSY-E--------TTESKIKREF--ESYGPIKRVRLVTDKETNKPRGYAFIEYMH-TRDMKAAYK 190 (473)
Q Consensus 132 ~l~V~nL~~-~--------~te~~L~~~F--~~~G~v~~v~i~~d~~tg~~kg~afVef~~-~~~a~~Al~ 190 (473)
+++|-|++. . .....|.+.| ..|.++. |..+.+. ....|+|.|+|.. ......|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 566778876 1 3447899977 8898875 4444443 2356899999974 344445553
No 228
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=35.01 E-value=55 Score=25.88 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.2
Q ss_pred CccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc
Q 011980 156 PIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 156 ~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~ 195 (473)
.|.++..+ ...+||-|||=....++..||+.+.+.
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46666554 446899999999999999999876554
No 229
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.72 E-value=1.2e+02 Score=20.98 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=41.2
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCccEEEecccCCCCCCceeEEEEeechHHHHHHHHHc
Q 011980 131 KTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 192 (473)
Q Consensus 131 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l 192 (473)
.+|.|.++.-..-...|...|.. ..|..+.+.. ..+-+.|+|.+.+....+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHc
Confidence 46889998877778889999988 7787777643 2457788888666677777653
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.66 E-value=84 Score=23.96 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCc
Q 011980 157 IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 195 (473)
Q Consensus 157 v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~ 195 (473)
|..+.++. ...||.||++...+.+..+|..+.|.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555542 36899999999999888888877774
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.37 E-value=98 Score=27.46 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=28.1
Q ss_pred ccEEEecccCCCCCCceeEEEEeechHHHHHHHHHcCCcee
Q 011980 157 IKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 197 (473)
Q Consensus 157 v~~v~i~~d~~tg~~kg~afVef~~~~~a~~Al~~l~g~~i 197 (473)
|..|... ...+||.|||=.....+..||+.+.+...
T Consensus 139 I~Si~~~-----d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQR-----DNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECC-----TTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEec-----CCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 5655442 34689999999999999999998877644
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.20 E-value=13 Score=31.56 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCccEEEecccCCCCCCceeEEEEee
Q 011980 146 KIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYM 180 (473)
Q Consensus 146 ~L~~~F~~~G~v~~v~i~~d~~tg~~kg~afVef~ 180 (473)
++..+|...|.|+.+. ..+||+||+..
T Consensus 3 ~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 4556666777776542 24689999976
Done!