Query 011982
Match_columns 473
No_of_seqs 170 out of 198
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0964 Structural maintenance 100.0 8.9E-46 1.9E-50 400.8 31.3 321 81-454 277-617 (1200)
2 TIGR02169 SMC_prok_A chromosom 99.9 2.1E-19 4.5E-24 209.3 38.8 64 351-421 519-585 (1164)
3 COG1196 Smc Chromosome segrega 99.9 3.4E-19 7.4E-24 208.8 37.5 138 299-452 465-610 (1163)
4 KOG0996 Structural maintenance 99.8 6.6E-16 1.4E-20 172.5 31.9 107 334-452 597-712 (1293)
5 TIGR02168 SMC_prok_B chromosom 99.6 1E-12 2.2E-17 153.1 36.3 66 352-424 518-586 (1179)
6 KOG0933 Structural maintenance 99.5 8.2E-12 1.8E-16 138.4 24.3 60 355-424 521-585 (1174)
7 COG1196 Smc Chromosome segrega 99.3 1.5E-08 3.3E-13 119.7 38.1 167 172-338 805-993 (1163)
8 TIGR02169 SMC_prok_A chromosom 99.3 3.4E-08 7.4E-13 115.7 38.4 44 295-338 959-1002(1164)
9 TIGR02168 SMC_prok_B chromosom 99.2 5.5E-08 1.2E-12 113.7 36.3 39 295-337 966-1008(1179)
10 PF00038 Filament: Intermediat 99.2 4.9E-08 1.1E-12 99.1 30.0 209 111-322 4-290 (312)
11 KOG0018 Structural maintenance 99.2 1E-08 2.2E-13 115.2 26.0 89 352-451 501-597 (1141)
12 KOG0161 Myosin class II heavy 98.9 1.3E-05 2.9E-10 96.9 38.2 44 295-338 1190-1233(1930)
13 KOG0250 DNA repair protein RAD 98.9 1.8E-05 3.8E-10 90.3 37.0 230 148-397 290-534 (1074)
14 PF07888 CALCOCO1: Calcium bin 98.8 0.00013 2.8E-09 79.1 40.7 43 295-337 418-460 (546)
15 PF06470 SMC_hinge: SMC protei 98.8 7.2E-10 1.6E-14 96.5 -0.9 84 353-444 2-88 (120)
16 KOG0964 Structural maintenance 98.8 1E-05 2.2E-10 90.7 30.0 211 81-291 256-493 (1200)
17 PRK04863 mukB cell division pr 98.7 5.3E-05 1.1E-09 91.1 37.3 164 242-414 563-738 (1486)
18 KOG0161 Myosin class II heavy 98.7 0.00011 2.4E-09 89.2 38.5 97 192-288 1045-1141(1930)
19 PRK04778 septation ring format 98.6 5.8E-05 1.3E-09 83.3 31.7 149 192-341 314-502 (569)
20 PRK02224 chromosome segregatio 98.6 0.00021 4.6E-09 82.4 36.3 97 192-288 353-449 (880)
21 PRK02224 chromosome segregatio 98.6 0.00018 3.8E-09 83.1 35.5 46 94-139 255-300 (880)
22 PF00261 Tropomyosin: Tropomyo 98.5 0.00012 2.6E-09 72.1 27.4 146 88-233 6-158 (237)
23 PRK11637 AmiB activator; Provi 98.5 0.00032 7E-09 74.7 31.9 78 205-282 173-250 (428)
24 PF00261 Tropomyosin: Tropomyo 98.5 0.00044 9.6E-09 68.1 30.0 90 195-284 127-216 (237)
25 TIGR00606 rad50 rad50. This fa 98.5 0.00036 7.9E-09 84.0 34.9 43 212-254 884-926 (1311)
26 PF14915 CCDC144C: CCDC144C pr 98.5 0.0023 4.9E-08 64.3 35.3 256 77-335 18-298 (305)
27 PF00038 Filament: Intermediat 98.5 0.0017 3.6E-08 66.0 34.2 64 180-243 186-250 (312)
28 PF07888 CALCOCO1: Calcium bin 98.4 0.0023 4.9E-08 69.6 36.3 36 256-291 348-383 (546)
29 PRK11637 AmiB activator; Provi 98.4 0.00038 8.3E-09 74.2 29.8 65 213-277 188-252 (428)
30 KOG0971 Microtubule-associated 98.4 0.0029 6.2E-08 71.2 36.6 152 105-256 256-443 (1243)
31 TIGR00606 rad50 rad50. This fa 98.4 0.0012 2.6E-08 79.6 36.9 39 295-335 1076-1114(1311)
32 KOG0977 Nuclear envelope prote 98.3 0.00054 1.2E-08 74.3 28.7 244 90-333 42-335 (546)
33 KOG0250 DNA repair protein RAD 98.3 0.002 4.3E-08 74.0 34.0 16 302-317 469-484 (1074)
34 PHA02562 46 endonuclease subun 98.3 0.0013 2.9E-08 71.9 30.4 26 89-114 173-198 (562)
35 KOG0996 Structural maintenance 98.3 0.0047 1E-07 71.3 34.7 18 445-462 1224-1243(1293)
36 KOG0933 Structural maintenance 98.3 0.0096 2.1E-07 67.9 36.5 94 192-285 798-891 (1174)
37 PF09726 Macoilin: Transmembra 98.2 0.003 6.6E-08 71.2 32.2 87 87-173 422-508 (697)
38 PF05701 WEMBL: Weak chloropla 98.2 0.011 2.5E-07 64.7 36.0 96 239-334 304-405 (522)
39 PF12128 DUF3584: Protein of u 98.2 0.006 1.3E-07 73.1 35.1 65 82-146 606-670 (1201)
40 PF15070 GOLGA2L5: Putative go 98.1 0.012 2.5E-07 65.7 34.4 181 77-257 23-215 (617)
41 PRK03918 chromosome segregatio 98.1 0.022 4.8E-07 65.8 37.8 25 261-285 401-425 (880)
42 KOG0977 Nuclear envelope prote 98.1 0.0032 6.9E-08 68.5 28.7 162 68-229 31-217 (546)
43 KOG0995 Centromere-associated 98.1 0.025 5.5E-07 61.4 35.0 191 98-288 260-476 (581)
44 PRK03918 chromosome segregatio 98.1 0.022 4.7E-07 65.8 37.3 27 304-330 401-427 (880)
45 PF05701 WEMBL: Weak chloropla 98.1 0.029 6.3E-07 61.5 37.6 57 88-144 135-191 (522)
46 KOG4674 Uncharacterized conser 98.1 0.028 6.1E-07 68.3 37.5 235 88-322 666-940 (1822)
47 KOG0976 Rho/Rac1-interacting s 98.1 0.021 4.5E-07 63.8 33.5 246 88-334 97-398 (1265)
48 PF10174 Cast: RIM-binding pro 98.0 0.023 4.9E-07 64.8 34.1 85 95-179 229-313 (775)
49 COG1579 Zn-ribbon protein, pos 98.0 0.0029 6.4E-08 62.3 23.4 22 388-415 204-225 (239)
50 KOG0971 Microtubule-associated 98.0 0.051 1.1E-06 61.6 35.2 26 436-461 640-670 (1243)
51 PRK04863 mukB cell division pr 98.0 0.035 7.6E-07 67.5 36.9 34 299-332 563-596 (1486)
52 PF12718 Tropomyosin_1: Tropom 98.0 0.0011 2.5E-08 60.4 19.1 135 176-328 2-142 (143)
53 KOG4674 Uncharacterized conser 98.0 0.031 6.7E-07 67.9 35.7 251 81-331 563-881 (1822)
54 KOG4643 Uncharacterized coiled 98.0 0.042 9.1E-07 62.9 34.6 99 238-336 416-523 (1195)
55 KOG1029 Endocytic adaptor prot 97.9 0.0057 1.2E-07 67.9 26.3 20 401-420 700-719 (1118)
56 PRK01156 chromosome segregatio 97.9 0.061 1.3E-06 62.5 36.8 24 262-285 367-390 (895)
57 COG1340 Uncharacterized archae 97.9 0.033 7.1E-07 56.3 34.4 74 216-289 165-238 (294)
58 COG4942 Membrane-bound metallo 97.9 0.035 7.5E-07 58.8 30.7 201 83-283 38-249 (420)
59 KOG0995 Centromere-associated 97.9 0.042 9.2E-07 59.7 31.7 229 90-322 235-520 (581)
60 PF15070 GOLGA2L5: Putative go 97.9 0.025 5.5E-07 63.0 31.0 89 80-168 5-102 (617)
61 KOG0979 Structural maintenance 97.9 0.01 2.2E-07 67.9 27.8 112 180-291 247-358 (1072)
62 KOG4643 Uncharacterized coiled 97.9 0.096 2.1E-06 60.1 35.1 137 152-288 414-553 (1195)
63 PF10174 Cast: RIM-binding pro 97.9 0.027 5.8E-07 64.2 31.4 31 258-288 465-495 (775)
64 PF09726 Macoilin: Transmembra 97.8 0.0085 1.8E-07 67.6 26.6 81 78-158 434-514 (697)
65 COG1340 Uncharacterized archae 97.8 0.046 1E-06 55.2 33.4 61 91-151 28-88 (294)
66 PF09755 DUF2046: Uncharacteri 97.8 0.057 1.2E-06 54.9 34.9 62 268-329 225-289 (310)
67 KOG0946 ER-Golgi vesicle-tethe 97.7 0.053 1.1E-06 60.9 30.1 205 74-278 648-882 (970)
68 PF13851 GAS: Growth-arrest sp 97.7 0.044 9.5E-07 52.8 25.7 166 90-262 27-196 (201)
69 COG1579 Zn-ribbon protein, pos 97.7 0.027 5.9E-07 55.5 24.3 64 94-157 14-77 (239)
70 PF12128 DUF3584: Protein of u 97.7 0.27 5.8E-06 59.2 37.7 173 159-331 312-513 (1201)
71 KOG0999 Microtubule-associated 97.7 0.13 2.9E-06 55.6 33.2 108 181-288 99-210 (772)
72 KOG4673 Transcription factor T 97.6 0.17 3.7E-06 56.0 32.9 48 270-317 585-635 (961)
73 KOG0980 Actin-binding protein 97.6 0.14 3E-06 58.1 31.3 177 81-257 335-514 (980)
74 COG4942 Membrane-bound metallo 97.6 0.14 3E-06 54.3 32.7 40 250-289 209-248 (420)
75 KOG0018 Structural maintenance 97.6 0.069 1.5E-06 61.7 29.0 255 73-334 649-948 (1141)
76 PF14662 CCDC155: Coiled-coil 97.6 0.073 1.6E-06 50.6 25.3 180 105-291 9-191 (193)
77 PF12718 Tropomyosin_1: Tropom 97.6 0.018 3.9E-07 52.6 20.0 60 111-170 7-66 (143)
78 PF14662 CCDC155: Coiled-coil 97.5 0.091 2E-06 50.0 27.7 54 131-184 66-119 (193)
79 PRK04778 septation ring format 97.5 0.16 3.6E-06 56.2 30.1 18 340-357 427-444 (569)
80 TIGR01843 type_I_hlyD type I s 97.5 0.022 4.8E-07 59.6 22.2 15 371-385 308-322 (423)
81 PF05667 DUF812: Protein of un 97.5 0.28 6.1E-06 54.6 33.1 80 255-334 495-590 (594)
82 KOG0963 Transcription factor/C 97.5 0.26 5.7E-06 54.2 32.1 211 112-332 183-421 (629)
83 PF15619 Lebercilin: Ciliary p 97.5 0.11 2.5E-06 49.7 24.8 67 111-177 12-78 (194)
84 PRK09039 hypothetical protein; 97.5 0.033 7.3E-07 57.9 22.8 32 113-144 62-93 (343)
85 PRK09039 hypothetical protein; 97.4 0.044 9.5E-07 57.0 23.3 70 192-261 113-182 (343)
86 COG4372 Uncharacterized protei 97.4 0.21 4.5E-06 52.1 31.4 184 89-272 94-280 (499)
87 KOG1029 Endocytic adaptor prot 97.4 0.34 7.3E-06 54.5 33.3 28 295-322 564-591 (1118)
88 KOG0612 Rho-associated, coiled 97.4 0.51 1.1E-05 55.5 34.4 59 88-146 470-529 (1317)
89 PF09789 DUF2353: Uncharacteri 97.4 0.055 1.2E-06 55.5 22.7 182 142-331 5-212 (319)
90 KOG0946 ER-Golgi vesicle-tethe 97.3 0.18 3.8E-06 56.9 27.3 66 98-163 651-716 (970)
91 KOG0976 Rho/Rac1-interacting s 97.3 0.45 9.7E-06 53.7 34.4 265 70-334 72-363 (1265)
92 COG4372 Uncharacterized protei 97.3 0.32 7E-06 50.7 30.0 95 78-173 70-164 (499)
93 COG3883 Uncharacterized protei 97.2 0.28 6.1E-06 49.1 28.7 66 92-157 33-98 (265)
94 PF01576 Myosin_tail_1: Myosin 97.2 7.8E-05 1.7E-09 85.9 0.0 156 78-233 126-281 (859)
95 KOG0980 Actin-binding protein 97.2 0.69 1.5E-05 52.8 35.9 150 87-243 362-514 (980)
96 PF10473 CENP-F_leu_zip: Leuci 97.1 0.085 1.8E-06 48.0 18.9 102 188-289 3-104 (140)
97 KOG4673 Transcription factor T 97.1 0.65 1.4E-05 51.7 33.7 51 180-230 514-565 (961)
98 PF10473 CENP-F_leu_zip: Leuci 97.1 0.13 2.8E-06 46.9 19.9 65 195-259 52-116 (140)
99 PF01576 Myosin_tail_1: Myosin 97.1 0.00011 2.3E-09 84.8 0.0 248 86-333 155-451 (859)
100 TIGR03185 DNA_S_dndD DNA sulfu 97.1 0.73 1.6E-05 51.9 36.5 76 210-285 392-469 (650)
101 PF15619 Lebercilin: Ciliary p 97.1 0.28 6.2E-06 47.0 23.7 70 260-333 120-189 (194)
102 PF05667 DUF812: Protein of un 97.1 0.22 4.7E-06 55.5 25.4 84 249-332 445-529 (594)
103 KOG1003 Actin filament-coating 97.1 0.28 6.2E-06 46.8 27.1 185 87-279 8-200 (205)
104 KOG0994 Extracellular matrix g 97.1 0.93 2E-05 53.1 30.0 68 112-179 1564-1631(1758)
105 PF05010 TACC: Transforming ac 97.1 0.32 6.9E-06 47.2 28.6 131 148-281 64-205 (207)
106 PF10481 CENP-F_N: Cenp-F N-te 97.1 0.12 2.7E-06 51.4 20.6 156 123-278 16-189 (307)
107 PRK11281 hypothetical protein; 97.0 1.2 2.6E-05 53.1 33.2 46 246-291 287-332 (1113)
108 PF08317 Spc7: Spc7 kinetochor 97.0 0.3 6.4E-06 50.4 24.1 14 274-287 278-291 (325)
109 KOG0999 Microtubule-associated 97.0 0.77 1.7E-05 50.0 27.5 87 193-279 105-191 (772)
110 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.0 0.16 3.5E-06 45.5 19.2 85 179-266 43-127 (132)
111 PF09730 BicD: Microtubule-ass 97.0 0.39 8.6E-06 54.4 26.2 60 80-139 262-321 (717)
112 PF04849 HAP1_N: HAP1 N-termin 96.9 0.58 1.3E-05 47.8 27.4 135 154-288 161-299 (306)
113 TIGR03185 DNA_S_dndD DNA sulfu 96.9 0.98 2.1E-05 50.9 29.2 22 267-288 393-414 (650)
114 PF05483 SCP-1: Synaptonemal c 96.8 1.2 2.5E-05 49.8 34.1 228 93-328 313-554 (786)
115 PF09730 BicD: Microtubule-ass 96.8 1.4 3.1E-05 50.0 35.0 91 83-173 27-117 (717)
116 TIGR03007 pepcterm_ChnLen poly 96.7 0.23 5E-06 53.8 21.7 27 302-328 356-382 (498)
117 TIGR01005 eps_transp_fam exopo 96.7 0.22 4.8E-06 56.9 22.4 32 300-331 375-406 (754)
118 KOG0963 Transcription factor/C 96.7 1.4 3E-05 48.8 30.9 41 421-463 542-591 (629)
119 COG5185 HEC1 Protein involved 96.7 1.2 2.5E-05 47.8 33.6 150 90-239 271-426 (622)
120 PF06160 EzrA: Septation ring 96.7 1.4 3.1E-05 48.8 34.3 99 258-356 299-439 (560)
121 TIGR02680 conserved hypothetic 96.7 2.6 5.5E-05 51.7 37.3 228 58-288 708-965 (1353)
122 PF08614 ATG16: Autophagy prot 96.6 0.036 7.9E-07 52.9 12.9 111 81-191 72-182 (194)
123 PF09789 DUF2353: Uncharacteri 96.6 1.1 2.4E-05 46.2 25.4 102 130-233 77-178 (319)
124 PF08614 ATG16: Autophagy prot 96.6 0.02 4.3E-07 54.7 10.7 87 194-280 73-159 (194)
125 PF08317 Spc7: Spc7 kinetochor 96.5 1.2 2.7E-05 45.9 26.1 52 223-274 216-267 (325)
126 TIGR01843 type_I_hlyD type I s 96.4 1.4 3E-05 46.1 24.5 7 408-414 346-352 (423)
127 PRK10698 phage shock protein P 96.4 1.1 2.4E-05 43.9 23.1 141 88-228 15-185 (222)
128 KOG0978 E3 ubiquitin ligase in 96.4 2.5 5.3E-05 47.8 30.6 100 192-291 507-620 (698)
129 PF13514 AAA_27: AAA domain 96.4 3.6 7.7E-05 49.4 33.8 22 297-318 936-957 (1111)
130 PF05622 HOOK: HOOK protein; 96.3 0.00097 2.1E-08 75.6 0.0 41 295-335 482-522 (713)
131 TIGR03007 pepcterm_ChnLen poly 96.3 1.4 3E-05 47.8 24.2 8 437-444 458-465 (498)
132 PF05483 SCP-1: Synaptonemal c 96.3 2.6 5.6E-05 47.2 36.2 253 84-336 227-506 (786)
133 PF04111 APG6: Autophagy prote 96.3 0.079 1.7E-06 54.5 13.6 51 241-291 75-125 (314)
134 KOG1853 LIS1-interacting prote 96.2 1.4 3.1E-05 43.7 25.9 84 197-280 93-179 (333)
135 PF04012 PspA_IM30: PspA/IM30 96.2 1.3 2.8E-05 42.9 24.6 107 85-191 11-143 (221)
136 PF05557 MAD: Mitotic checkpoi 96.2 0.061 1.3E-06 61.2 13.6 58 85-142 352-409 (722)
137 PF05010 TACC: Transforming ac 96.2 1.3 2.9E-05 42.9 29.4 125 192-330 80-204 (207)
138 PF05557 MAD: Mitotic checkpoi 96.2 0.012 2.6E-07 66.9 7.8 72 258-329 503-587 (722)
139 KOG0982 Centrosomal protein Nu 96.1 2.4 5.1E-05 45.0 24.1 180 95-291 213-393 (502)
140 KOG0978 E3 ubiquitin ligase in 96.1 3.4 7.3E-05 46.8 34.5 125 160-291 454-585 (698)
141 TIGR01000 bacteriocin_acc bact 96.1 2.2 4.9E-05 45.9 24.3 29 263-291 289-317 (457)
142 PF15066 CAGE1: Cancer-associa 96.1 2.6 5.7E-05 45.1 25.0 83 133-215 391-473 (527)
143 PF05622 HOOK: HOOK protein; 96.0 0.0017 3.6E-08 73.7 0.0 71 88-158 330-403 (713)
144 KOG4360 Uncharacterized coiled 96.0 2.9 6.4E-05 45.3 23.6 132 150-285 163-302 (596)
145 PRK10929 putative mechanosensi 96.0 3.9 8.5E-05 48.9 27.2 21 309-329 259-279 (1109)
146 TIGR02680 conserved hypothetic 96.0 6.1 0.00013 48.5 32.6 38 103-140 741-778 (1353)
147 PRK11281 hypothetical protein; 95.9 4.3 9.2E-05 48.6 27.3 41 130-170 126-166 (1113)
148 PF09728 Taxilin: Myosin-like 95.9 2.4 5.3E-05 43.6 35.3 66 79-144 25-90 (309)
149 PF06160 EzrA: Septation ring 95.9 3.8 8.2E-05 45.5 31.8 58 234-291 376-433 (560)
150 TIGR01005 eps_transp_fam exopo 95.9 2.2 4.7E-05 48.9 24.2 11 407-417 574-584 (754)
151 PRK10929 putative mechanosensi 95.9 5.8 0.00013 47.4 34.0 46 246-291 267-312 (1109)
152 KOG1003 Actin filament-coating 95.9 1.8 3.9E-05 41.5 27.1 62 97-158 4-65 (205)
153 TIGR02977 phageshock_pspA phag 95.8 2.1 4.5E-05 41.7 22.7 101 90-190 17-143 (219)
154 COG3096 MukB Uncharacterized p 95.8 4.8 0.0001 45.6 31.6 138 245-394 565-717 (1480)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 1.5 3.3E-05 39.3 19.2 6 244-249 119-124 (132)
156 PF10481 CENP-F_N: Cenp-F N-te 95.7 1.2 2.6E-05 44.6 18.0 155 111-273 18-191 (307)
157 PF05911 DUF869: Plant protein 95.6 2.1 4.5E-05 49.2 22.4 75 59-137 569-643 (769)
158 TIGR03017 EpsF chain length de 95.5 3.2 7E-05 44.1 22.6 30 123-152 169-198 (444)
159 PLN02939 transferase, transfer 95.5 2.4 5.1E-05 49.8 22.5 62 81-143 127-188 (977)
160 PF09304 Cortex-I_coil: Cortex 95.5 1.1 2.3E-05 38.9 14.8 70 158-227 7-76 (107)
161 COG0419 SbcC ATPase involved i 95.4 7.5 0.00016 45.7 38.5 20 269-288 498-517 (908)
162 PF09304 Cortex-I_coil: Cortex 95.3 1.5 3.3E-05 38.0 15.3 74 182-255 3-76 (107)
163 KOG0979 Structural maintenance 95.3 8 0.00017 45.2 30.6 62 92-153 638-699 (1072)
164 TIGR01000 bacteriocin_acc bact 95.2 3.8 8.2E-05 44.2 21.8 29 114-142 93-121 (457)
165 PF13851 GAS: Growth-arrest sp 95.2 3.3 7.1E-05 40.0 25.1 81 235-322 91-171 (201)
166 COG0419 SbcC ATPase involved i 95.2 9 0.0002 45.0 37.9 12 449-460 874-885 (908)
167 PF04111 APG6: Autophagy prote 95.1 0.47 1E-05 48.9 13.7 68 219-286 46-113 (314)
168 PF12325 TMF_TATA_bd: TATA ele 95.0 1.2 2.5E-05 39.6 14.3 41 192-232 20-60 (120)
169 PF10168 Nup88: Nuclear pore c 94.9 7.6 0.00016 44.5 23.9 51 88-138 541-592 (717)
170 smart00787 Spc7 Spc7 kinetocho 94.8 5.6 0.00012 41.0 25.5 46 243-288 217-262 (312)
171 KOG4809 Rab6 GTPase-interactin 94.8 7.6 0.00017 42.5 25.3 120 172-291 329-454 (654)
172 PF10168 Nup88: Nuclear pore c 94.8 5.8 0.00013 45.4 22.8 84 78-161 538-622 (717)
173 PLN02939 transferase, transfer 94.8 11 0.00025 44.3 32.2 61 263-323 322-387 (977)
174 PF13514 AAA_27: AAA domain 94.7 13 0.00028 44.7 34.3 34 114-147 676-709 (1111)
175 KOG0962 DNA repair protein RAD 94.6 14 0.0003 44.6 33.8 75 88-162 841-915 (1294)
176 KOG1937 Uncharacterized conser 94.6 7.7 0.00017 41.6 31.5 150 195-345 345-499 (521)
177 PF09728 Taxilin: Myosin-like 94.6 6.5 0.00014 40.5 31.5 211 79-289 46-275 (309)
178 KOG0249 LAR-interacting protei 94.5 6.8 0.00015 44.2 21.4 69 174-242 202-270 (916)
179 TIGR00634 recN DNA repair prot 94.5 9.7 0.00021 42.2 25.9 12 455-466 538-549 (563)
180 PF10146 zf-C4H2: Zinc finger- 94.5 1.5 3.2E-05 43.3 14.9 72 216-287 32-103 (230)
181 KOG0962 DNA repair protein RAD 94.4 16 0.00034 44.2 32.0 39 251-289 1041-1079(1294)
182 PF10146 zf-C4H2: Zinc finger- 94.3 2.1 4.5E-05 42.2 15.6 36 250-285 59-94 (230)
183 PF12325 TMF_TATA_bd: TATA ele 94.2 3 6.4E-05 37.1 14.9 48 208-255 67-114 (120)
184 PF15397 DUF4618: Domain of un 94.2 7 0.00015 39.2 28.3 194 123-329 11-221 (258)
185 COG5185 HEC1 Protein involved 94.0 11 0.00023 40.8 31.3 60 85-144 297-356 (622)
186 KOG4360 Uncharacterized coiled 93.9 4.7 0.0001 43.7 18.2 136 141-278 161-302 (596)
187 PF11559 ADIP: Afadin- and alp 93.9 5 0.00011 36.5 17.0 9 315-323 140-148 (151)
188 PF04849 HAP1_N: HAP1 N-termin 93.8 9 0.0002 39.3 28.7 66 213-278 203-268 (306)
189 KOG2991 Splicing regulator [RN 93.8 7.9 0.00017 38.7 26.2 40 50-89 45-96 (330)
190 KOG1850 Myosin-like coiled-coi 93.8 9.2 0.0002 39.3 26.8 104 180-283 221-331 (391)
191 PF00769 ERM: Ezrin/radixin/mo 93.8 7.6 0.00016 38.6 18.6 117 172-288 10-126 (246)
192 KOG0804 Cytoplasmic Zn-finger 93.7 4.4 9.5E-05 43.4 17.3 90 94-190 329-419 (493)
193 COG4477 EzrA Negative regulato 93.6 13 0.00029 40.7 26.1 118 210-327 355-494 (570)
194 PF06008 Laminin_I: Laminin Do 93.6 8.6 0.00019 38.3 29.9 69 84-152 46-114 (264)
195 PF13870 DUF4201: Domain of un 93.4 6.8 0.00015 36.7 22.8 25 253-277 147-171 (177)
196 PRK10884 SH3 domain-containing 93.3 1.4 3E-05 42.7 12.1 74 212-288 96-169 (206)
197 PF06005 DUF904: Protein of un 93.2 2.4 5.3E-05 34.3 11.5 66 91-156 5-70 (72)
198 PF05911 DUF869: Plant protein 93.2 20 0.00043 41.4 26.0 128 113-240 26-165 (769)
199 KOG0249 LAR-interacting protei 93.2 11 0.00024 42.6 20.0 37 242-278 221-257 (916)
200 COG1842 PspA Phage shock prote 92.9 10 0.00022 37.3 22.5 66 82-147 9-74 (225)
201 PF09738 DUF2051: Double stran 92.8 8.1 0.00018 39.7 17.5 33 308-340 219-251 (302)
202 PF11932 DUF3450: Protein of u 92.8 8.1 0.00018 38.2 17.2 90 75-164 27-116 (251)
203 KOG0243 Kinesin-like protein [ 92.8 26 0.00056 41.5 26.2 34 246-279 534-567 (1041)
204 PF15397 DUF4618: Domain of un 92.7 12 0.00026 37.6 29.6 66 111-179 38-107 (258)
205 PF06818 Fez1: Fez1; InterPro 92.7 5.7 0.00012 38.4 15.2 37 128-164 13-49 (202)
206 KOG1899 LAR transmembrane tyro 92.7 19 0.00042 40.2 20.7 77 104-180 111-194 (861)
207 KOG0288 WD40 repeat protein Ti 92.6 6.5 0.00014 41.7 16.5 76 126-201 7-82 (459)
208 TIGR03017 EpsF chain length de 92.5 17 0.00036 38.7 27.1 19 270-288 347-365 (444)
209 PRK15422 septal ring assembly 92.5 2.2 4.7E-05 35.0 10.2 69 219-287 7-75 (79)
210 PF14915 CCDC144C: CCDC144C pr 92.4 14 0.0003 37.7 35.0 34 299-332 269-302 (305)
211 PF11559 ADIP: Afadin- and alp 92.4 8.3 0.00018 35.1 16.9 60 105-164 53-112 (151)
212 COG2433 Uncharacterized conser 92.4 2.5 5.5E-05 46.7 13.7 53 138-190 421-475 (652)
213 PF09755 DUF2046: Uncharacteri 92.2 16 0.00034 37.6 33.4 33 261-293 264-296 (310)
214 PF10498 IFT57: Intra-flagella 92.0 7.2 0.00016 41.0 16.3 74 100-176 216-289 (359)
215 PF11932 DUF3450: Protein of u 91.6 15 0.00033 36.3 19.1 51 182-232 43-93 (251)
216 KOG4687 Uncharacterized coiled 91.6 17 0.00037 36.7 21.7 200 84-286 10-209 (389)
217 KOG0982 Centrosomal protein Nu 91.5 22 0.00048 38.0 23.2 59 204-262 299-357 (502)
218 KOG1850 Myosin-like coiled-coi 91.5 19 0.00041 37.2 32.0 106 225-330 217-328 (391)
219 PRK10246 exonuclease subunit S 91.4 38 0.00083 40.6 37.9 6 357-362 880-885 (1047)
220 KOG0239 Kinesin (KAR3 subfamil 91.4 20 0.00043 40.9 20.0 11 258-268 300-310 (670)
221 PF12795 MscS_porin: Mechanose 91.3 16 0.00034 35.9 23.5 31 93-123 34-64 (240)
222 COG1842 PspA Phage shock prote 91.1 17 0.00036 35.8 21.2 12 297-308 194-205 (225)
223 PRK10869 recombination and rep 91.1 29 0.00063 38.6 27.1 43 95-137 155-197 (553)
224 KOG4603 TBP-1 interacting prot 90.9 9.7 0.00021 35.9 13.9 99 175-273 69-177 (201)
225 KOG0994 Extracellular matrix g 90.9 43 0.00092 40.2 35.4 26 303-328 1691-1716(1758)
226 PF07106 TBPIP: Tat binding pr 90.9 3.5 7.5E-05 38.3 11.4 7 262-268 159-165 (169)
227 COG2433 Uncharacterized conser 90.9 18 0.0004 40.2 18.2 48 197-244 417-464 (652)
228 PF04582 Reo_sigmaC: Reovirus 90.8 0.48 1E-05 48.7 6.0 128 146-287 28-155 (326)
229 PF12795 MscS_porin: Mechanose 90.7 18 0.00039 35.5 24.0 19 89-107 44-62 (240)
230 PLN03188 kinesin-12 family pro 90.7 47 0.001 40.2 30.3 37 313-354 1223-1259(1320)
231 PF10498 IFT57: Intra-flagella 90.6 8.8 0.00019 40.4 15.2 52 182-233 259-311 (359)
232 PF08647 BRE1: BRE1 E3 ubiquit 90.6 7.6 0.00017 32.9 12.2 72 210-281 4-75 (96)
233 COG3074 Uncharacterized protei 90.5 4.8 0.0001 32.3 9.9 65 220-284 8-72 (79)
234 KOG2129 Uncharacterized conser 90.2 29 0.00062 37.1 26.5 93 157-255 133-226 (552)
235 PF06005 DUF904: Protein of un 90.1 6.2 0.00014 31.9 10.7 14 258-271 39-52 (72)
236 COG3096 MukB Uncharacterized p 90.0 41 0.00089 38.6 31.0 44 89-132 835-878 (1480)
237 KOG4438 Centromere-associated 90.0 30 0.00065 37.0 29.0 38 192-229 245-282 (446)
238 PF08647 BRE1: BRE1 E3 ubiquit 90.0 5.8 0.00013 33.7 11.0 88 188-275 2-90 (96)
239 PF15066 CAGE1: Cancer-associa 89.9 32 0.0007 37.2 28.2 176 102-285 315-505 (527)
240 PF04012 PspA_IM30: PspA/IM30 89.7 20 0.00043 34.6 24.2 41 124-164 29-69 (221)
241 PRK10246 exonuclease subunit S 89.6 54 0.0012 39.3 35.0 9 26-34 506-514 (1047)
242 PF13166 AAA_13: AAA domain 89.5 42 0.00092 38.0 26.8 32 357-393 535-570 (712)
243 KOG1899 LAR transmembrane tyro 89.5 41 0.00088 37.8 21.4 54 124-177 110-163 (861)
244 PF10212 TTKRSYEDQ: Predicted 89.4 37 0.00081 37.3 24.4 56 206-264 459-514 (518)
245 KOG0972 Huntingtin interacting 89.4 15 0.00032 37.5 14.8 98 68-165 223-320 (384)
246 KOG2196 Nuclear porin [Nuclear 89.4 24 0.00052 35.0 19.2 170 73-256 76-245 (254)
247 PRK15422 septal ring assembly 89.2 6.9 0.00015 32.2 10.2 68 88-155 9-76 (79)
248 PRK10884 SH3 domain-containing 89.0 7.6 0.00017 37.7 12.4 23 262-284 136-158 (206)
249 PF14197 Cep57_CLD_2: Centroso 89.0 5.8 0.00013 31.8 9.6 59 152-210 4-62 (69)
250 KOG4593 Mitotic checkpoint pro 88.9 47 0.001 37.7 35.3 19 273-291 276-294 (716)
251 PF12329 TMF_DNA_bd: TATA elem 88.8 7.8 0.00017 31.4 10.4 69 102-170 3-71 (74)
252 PRK09841 cryptic autophosphory 88.7 29 0.00063 39.8 18.9 34 299-332 368-401 (726)
253 PF06705 SF-assemblin: SF-asse 88.6 27 0.00058 34.5 33.3 142 150-291 82-230 (247)
254 KOG1103 Predicted coiled-coil 88.6 34 0.00074 35.7 22.5 66 84-149 112-184 (561)
255 COG3074 Uncharacterized protei 88.5 8.3 0.00018 31.0 9.9 58 91-148 12-69 (79)
256 PF14197 Cep57_CLD_2: Centroso 88.5 7.6 0.00017 31.1 10.0 62 109-170 3-64 (69)
257 PF15290 Syntaphilin: Golgi-lo 88.5 24 0.00051 35.8 15.5 16 183-198 102-118 (305)
258 PLN03188 kinesin-12 family pro 88.5 67 0.0015 39.0 25.3 84 262-355 1069-1152(1320)
259 PF04582 Reo_sigmaC: Reovirus 88.2 0.82 1.8E-05 47.1 5.4 121 173-293 34-154 (326)
260 KOG0239 Kinesin (KAR3 subfamil 88.2 54 0.0012 37.5 21.9 7 371-377 390-396 (670)
261 KOG1853 LIS1-interacting prote 88.1 30 0.00066 34.6 23.1 95 87-184 24-122 (333)
262 KOG0288 WD40 repeat protein Ti 87.8 31 0.00067 36.8 16.5 18 407-424 340-357 (459)
263 COG4026 Uncharacterized protei 87.8 5.2 0.00011 39.1 10.1 15 214-228 140-154 (290)
264 PF05278 PEARLI-4: Arabidopsis 87.8 18 0.00039 36.5 14.3 67 208-274 192-258 (269)
265 PF13870 DUF4201: Domain of un 87.7 24 0.00052 32.9 23.3 34 197-230 100-133 (177)
266 PF06785 UPF0242: Uncharacteri 87.6 38 0.00083 35.2 20.4 22 77-98 62-83 (401)
267 PF05384 DegS: Sensor protein 87.5 25 0.00053 32.9 22.1 50 172-221 96-145 (159)
268 PF07106 TBPIP: Tat binding pr 87.3 8.5 0.00018 35.7 11.2 61 197-257 74-136 (169)
269 PRK11519 tyrosine kinase; Prov 87.2 28 0.00061 39.9 17.5 33 299-331 368-400 (719)
270 PF00769 ERM: Ezrin/radixin/mo 87.1 34 0.00073 34.0 18.2 30 257-286 174-203 (246)
271 COG4026 Uncharacterized protei 87.1 9.6 0.00021 37.3 11.5 63 197-259 144-206 (290)
272 TIGR00634 recN DNA repair prot 87.0 55 0.0012 36.4 28.1 38 98-135 162-199 (563)
273 PF14073 Cep57_CLD: Centrosome 86.9 29 0.00062 33.0 21.7 76 153-228 64-139 (178)
274 COG3206 GumC Uncharacterized p 86.3 52 0.0011 35.4 23.8 29 302-330 374-402 (458)
275 PRK10698 phage shock protein P 86.3 35 0.00076 33.4 23.0 43 214-256 97-139 (222)
276 PF10234 Cluap1: Clusterin-ass 86.0 42 0.0009 34.0 17.6 91 193-283 167-257 (267)
277 PF09738 DUF2051: Double stran 85.7 21 0.00046 36.7 14.0 83 88-170 82-164 (302)
278 PRK09841 cryptic autophosphory 85.6 36 0.00078 39.1 17.4 12 407-418 559-570 (726)
279 PF05266 DUF724: Protein of un 85.1 23 0.0005 34.0 13.1 54 236-289 130-183 (190)
280 PF09787 Golgin_A5: Golgin sub 84.9 66 0.0014 35.4 27.9 36 253-288 276-311 (511)
281 PF06785 UPF0242: Uncharacteri 84.8 53 0.0011 34.2 22.2 90 192-284 131-220 (401)
282 PF10234 Cluap1: Clusterin-ass 84.8 47 0.001 33.6 17.7 111 178-288 145-255 (267)
283 PF09787 Golgin_A5: Golgin sub 84.8 67 0.0015 35.3 30.1 26 154-179 215-240 (511)
284 PF10805 DUF2730: Protein of u 84.7 12 0.00025 32.4 10.0 54 195-248 35-90 (106)
285 TIGR02971 heterocyst_DevB ABC 84.6 49 0.0011 33.6 16.9 24 357-385 229-252 (327)
286 PF03999 MAP65_ASE1: Microtubu 84.3 1.1 2.4E-05 50.2 4.4 138 201-339 206-376 (619)
287 KOG1962 B-cell receptor-associ 84.2 16 0.00035 35.7 11.7 61 214-274 149-209 (216)
288 PF15254 CCDC14: Coiled-coil d 84.2 87 0.0019 36.1 21.2 29 108-136 384-412 (861)
289 PF05266 DUF724: Protein of un 83.7 42 0.00092 32.1 14.3 64 228-291 115-178 (190)
290 PRK11519 tyrosine kinase; Prov 83.7 60 0.0013 37.2 18.0 11 407-417 554-564 (719)
291 KOG0243 Kinesin-like protein [ 83.7 1.1E+02 0.0023 36.7 27.6 56 267-322 627-689 (1041)
292 COG5283 Phage-related tail pro 83.2 1.2E+02 0.0025 36.8 27.3 115 116-230 27-141 (1213)
293 KOG4593 Mitotic checkpoint pro 83.0 91 0.002 35.5 34.6 12 407-418 538-549 (716)
294 PF03962 Mnd1: Mnd1 family; I 82.7 31 0.00068 32.9 12.9 25 181-205 103-127 (188)
295 TIGR02977 phageshock_pspA phag 82.7 49 0.0011 32.1 22.9 8 299-306 193-200 (219)
296 PRK04406 hypothetical protein; 82.2 10 0.00022 30.9 8.0 37 214-250 9-45 (75)
297 TIGR02338 gimC_beta prefoldin, 82.1 28 0.0006 30.1 11.4 36 247-282 70-105 (110)
298 COG4717 Uncharacterized conser 82.1 1.1E+02 0.0024 35.8 29.2 17 299-315 424-440 (984)
299 KOG4807 F-actin binding protei 82.0 75 0.0016 33.8 26.2 76 247-322 445-540 (593)
300 TIGR01010 BexC_CtrB_KpsE polys 81.9 52 0.0011 34.2 15.5 21 262-282 282-302 (362)
301 PF15290 Syntaphilin: Golgi-lo 81.8 48 0.0011 33.6 14.1 55 59-123 47-101 (305)
302 KOG4809 Rab6 GTPase-interactin 81.4 93 0.002 34.5 27.7 139 97-235 324-468 (654)
303 PF06705 SF-assemblin: SF-asse 81.4 58 0.0013 32.1 31.8 103 178-280 136-241 (247)
304 TIGR02231 conserved hypothetic 81.4 17 0.00038 39.8 12.2 96 196-291 72-171 (525)
305 KOG0240 Kinesin (SMY1 subfamil 81.4 95 0.0021 34.6 18.7 97 95-191 412-508 (607)
306 PF07798 DUF1640: Protein of u 81.3 48 0.001 31.1 16.3 115 193-310 28-154 (177)
307 PRK03947 prefoldin subunit alp 81.1 40 0.00087 30.1 13.1 33 253-285 96-128 (140)
308 TIGR02449 conserved hypothetic 81.1 19 0.0004 28.7 8.9 60 113-172 2-61 (65)
309 PRK03947 prefoldin subunit alp 81.0 41 0.00088 30.1 14.4 39 246-284 96-134 (140)
310 PF15294 Leu_zip: Leucine zipp 81.0 68 0.0015 32.6 15.7 147 95-269 130-278 (278)
311 PF10267 Tmemb_cc2: Predicted 80.3 87 0.0019 33.5 16.8 17 262-278 302-318 (395)
312 PF13166 AAA_13: AAA domain 80.2 1.1E+02 0.0024 34.6 28.6 9 388-396 530-538 (712)
313 TIGR03752 conj_TIGR03752 integ 80.0 21 0.00046 38.7 11.8 79 205-283 62-141 (472)
314 PRK02119 hypothetical protein; 79.8 11 0.00024 30.5 7.5 25 215-239 8-32 (73)
315 KOG4572 Predicted DNA-binding 79.7 1.3E+02 0.0028 35.1 23.1 49 179-227 985-1034(1424)
316 KOG1937 Uncharacterized conser 79.4 98 0.0021 33.5 32.3 56 258-323 462-517 (521)
317 PF08826 DMPK_coil: DMPK coile 79.0 29 0.00063 27.2 9.6 51 116-166 2-52 (61)
318 PRK02793 phi X174 lysis protei 78.9 10 0.00022 30.6 7.0 37 214-250 6-42 (72)
319 KOG2264 Exostosin EXT1L [Signa 78.8 14 0.00031 40.8 10.0 66 197-262 81-146 (907)
320 PF09744 Jnk-SapK_ap_N: JNK_SA 78.5 58 0.0012 30.4 18.6 61 205-265 85-145 (158)
321 TIGR00998 8a0101 efflux pump m 78.5 42 0.00091 34.1 13.2 15 371-385 239-253 (334)
322 TIGR01010 BexC_CtrB_KpsE polys 78.5 58 0.0012 33.8 14.4 28 182-209 170-198 (362)
323 KOG4302 Microtubule-associated 78.4 1.3E+02 0.0028 34.3 23.5 90 192-281 100-197 (660)
324 PF15035 Rootletin: Ciliary ro 78.4 63 0.0014 30.7 20.6 82 199-283 85-166 (182)
325 PRK04406 hypothetical protein; 78.3 21 0.00046 29.0 8.7 46 94-139 8-53 (75)
326 PRK00409 recombination and DNA 78.2 88 0.0019 36.4 17.0 31 172-202 553-584 (782)
327 PRK04325 hypothetical protein; 78.0 14 0.00031 29.9 7.7 29 216-244 9-37 (74)
328 PF12777 MT: Microtubule-bindi 77.8 9.4 0.0002 39.7 8.3 11 180-190 290-300 (344)
329 PF06810 Phage_GP20: Phage min 77.8 31 0.00067 31.9 10.8 48 214-261 18-68 (155)
330 KOG3990 Uncharacterized conser 77.8 23 0.00049 35.4 10.2 54 59-119 208-261 (305)
331 PF14992 TMCO5: TMCO5 family 77.4 88 0.0019 31.9 15.5 33 110-142 10-42 (280)
332 PF02183 HALZ: Homeobox associ 77.4 10 0.00022 27.9 6.0 42 241-282 2-43 (45)
333 PF14992 TMCO5: TMCO5 family 77.3 88 0.0019 31.8 15.1 43 88-130 9-51 (280)
334 COG3206 GumC Uncharacterized p 77.2 1.1E+02 0.0024 32.9 25.4 24 156-179 242-265 (458)
335 KOG3091 Nuclear pore complex, 77.0 1.2E+02 0.0026 33.2 16.1 53 113-165 336-388 (508)
336 PRK00295 hypothetical protein; 77.0 14 0.0003 29.5 7.1 24 218-241 7-30 (68)
337 PF04912 Dynamitin: Dynamitin 76.7 1.1E+02 0.0023 32.5 19.6 25 77-101 203-227 (388)
338 COG0497 RecN ATPase involved i 76.7 1.3E+02 0.0029 33.6 27.4 20 394-413 453-472 (557)
339 TIGR02231 conserved hypothetic 76.1 35 0.00076 37.4 12.6 27 258-284 145-171 (525)
340 TIGR02449 conserved hypothetic 76.0 27 0.0006 27.7 8.4 31 238-268 15-45 (65)
341 PF10805 DUF2730: Protein of u 75.8 27 0.00058 30.2 9.3 58 201-258 34-93 (106)
342 PF15450 DUF4631: Domain of un 75.7 1.3E+02 0.0029 33.1 33.2 119 105-230 259-379 (531)
343 KOG1962 B-cell receptor-associ 75.3 64 0.0014 31.6 12.6 60 221-280 149-208 (216)
344 COG1382 GimC Prefoldin, chaper 75.3 60 0.0013 28.9 12.6 13 118-130 20-32 (119)
345 COG4477 EzrA Negative regulato 74.8 1.4E+02 0.0031 33.0 29.6 37 152-188 353-389 (570)
346 PRK00736 hypothetical protein; 74.4 17 0.00038 28.9 7.1 11 219-229 8-18 (68)
347 PRK10361 DNA recombination pro 74.3 1.4E+02 0.0031 32.7 25.8 23 439-461 340-362 (475)
348 PRK10476 multidrug resistance 74.2 65 0.0014 33.1 13.4 168 205-385 82-257 (346)
349 PF15188 CCDC-167: Coiled-coil 74.1 16 0.00034 30.6 7.0 28 259-286 37-64 (85)
350 KOG4438 Centromere-associated 73.7 1.4E+02 0.0029 32.2 33.6 18 305-322 363-380 (446)
351 PRK00846 hypothetical protein; 73.4 31 0.00067 28.3 8.4 15 216-230 13-27 (77)
352 PF06103 DUF948: Bacterial pro 73.2 51 0.0011 27.2 10.1 64 201-264 25-88 (90)
353 TIGR01069 mutS2 MutS2 family p 73.2 1.1E+02 0.0023 35.7 15.9 29 170-198 546-575 (771)
354 PF04102 SlyX: SlyX; InterPro 73.1 23 0.00049 28.2 7.5 47 96-142 3-49 (69)
355 PF15456 Uds1: Up-regulated Du 72.8 70 0.0015 28.6 12.5 79 88-167 27-116 (124)
356 KOG2991 Splicing regulator [RN 72.8 1.1E+02 0.0024 30.8 24.1 28 180-207 175-203 (330)
357 PF01486 K-box: K-box region; 72.7 34 0.00074 28.9 9.1 50 270-326 51-100 (100)
358 PRK02119 hypothetical protein; 72.6 32 0.0007 27.8 8.4 43 95-137 7-49 (73)
359 KOG2751 Beclin-like protein [S 72.6 1.4E+02 0.0031 32.1 16.1 27 436-462 356-386 (447)
360 PF06818 Fez1: Fez1; InterPro 72.1 99 0.0022 30.0 23.1 88 87-181 14-101 (202)
361 PF10211 Ax_dynein_light: Axon 71.8 94 0.002 29.6 14.6 102 155-256 86-189 (189)
362 KOG1103 Predicted coiled-coil 71.7 1.4E+02 0.003 31.4 23.0 54 235-288 243-296 (561)
363 PF05529 Bap31: B-cell recepto 71.7 91 0.002 29.4 13.6 20 172-191 91-110 (192)
364 KOG2196 Nuclear porin [Nuclear 71.7 1.1E+02 0.0024 30.5 20.1 65 180-244 98-162 (254)
365 KOG4687 Uncharacterized coiled 71.6 1.2E+02 0.0026 30.8 18.0 161 76-236 83-252 (389)
366 PF13863 DUF4200: Domain of un 71.5 68 0.0015 27.9 17.4 58 234-291 50-107 (126)
367 PF08606 Prp19: Prp19/Pso4-lik 71.5 40 0.00087 27.2 8.4 58 262-327 12-69 (70)
368 PF13863 DUF4200: Domain of un 71.0 70 0.0015 27.8 16.4 97 83-179 11-107 (126)
369 PF02994 Transposase_22: L1 tr 70.9 15 0.00033 38.7 7.8 44 248-291 148-191 (370)
370 KOG2751 Beclin-like protein [S 70.6 1.6E+02 0.0035 31.8 16.0 72 108-179 147-223 (447)
371 KOG3091 Nuclear pore complex, 70.5 1.7E+02 0.0037 32.1 17.2 19 147-165 377-395 (508)
372 PF08826 DMPK_coil: DMPK coile 70.4 50 0.0011 25.9 9.8 49 185-233 8-56 (61)
373 PF10368 YkyA: Putative cell-w 70.3 1.1E+02 0.0023 29.7 17.9 174 131-327 17-193 (204)
374 PF06156 DUF972: Protein of un 70.3 26 0.00057 30.5 7.8 50 237-286 8-57 (107)
375 TIGR03752 conj_TIGR03752 integ 70.0 43 0.00093 36.5 10.9 84 235-332 57-140 (472)
376 COG1382 GimC Prefoldin, chaper 69.5 83 0.0018 28.0 13.5 85 81-166 18-111 (119)
377 KOG4460 Nuclear pore complex, 69.1 2E+02 0.0042 32.2 22.8 85 73-170 556-640 (741)
378 PF12761 End3: Actin cytoskele 69.0 80 0.0017 30.5 11.5 32 197-228 162-193 (195)
379 KOG4302 Microtubule-associated 68.8 2.2E+02 0.0047 32.6 32.4 157 89-245 53-269 (660)
380 PF06548 Kinesin-related: Kine 68.6 1.8E+02 0.0039 31.6 21.0 259 93-355 101-382 (488)
381 PF02050 FliJ: Flagellar FliJ 68.5 68 0.0015 26.7 16.2 50 236-285 58-107 (123)
382 PRK04325 hypothetical protein; 68.4 44 0.00096 27.1 8.3 39 99-137 11-49 (74)
383 PRK00295 hypothetical protein; 67.6 49 0.0011 26.4 8.3 39 99-137 7-45 (68)
384 PF06156 DUF972: Protein of un 67.5 34 0.00074 29.8 8.0 51 229-279 7-57 (107)
385 PRK00846 hypothetical protein; 67.4 39 0.00084 27.8 7.8 33 192-224 17-49 (77)
386 COG2900 SlyX Uncharacterized p 67.4 38 0.00082 27.5 7.5 49 213-261 5-53 (72)
387 PF12777 MT: Microtubule-bindi 67.2 1.6E+02 0.0035 30.5 21.6 60 297-364 273-332 (344)
388 PF07989 Microtub_assoc: Micro 67.1 68 0.0015 26.1 9.5 26 252-277 44-69 (75)
389 PRK00736 hypothetical protein; 67.1 46 0.001 26.5 8.1 41 99-139 7-47 (68)
390 KOG4603 TBP-1 interacting prot 67.0 1.2E+02 0.0026 28.8 11.8 69 189-257 79-150 (201)
391 KOG2264 Exostosin EXT1L [Signa 66.9 37 0.00079 37.7 9.6 55 204-258 95-149 (907)
392 PLN03229 acetyl-coenzyme A car 66.9 2.5E+02 0.0054 32.5 23.2 32 295-330 696-727 (762)
393 PF03915 AIP3: Actin interacti 66.5 1.9E+02 0.0042 31.2 15.7 27 265-291 253-279 (424)
394 KOG4677 Golgi integral membran 66.5 2E+02 0.0043 31.3 24.9 312 79-414 213-532 (554)
395 COG4717 Uncharacterized conser 66.2 2.7E+02 0.0059 32.8 31.1 46 78-123 552-597 (984)
396 COG4913 Uncharacterized protei 66.1 2.6E+02 0.0056 32.4 17.9 106 212-321 670-803 (1104)
397 PF08581 Tup_N: Tup N-terminal 66.1 74 0.0016 26.2 11.3 17 236-252 45-61 (79)
398 PF10212 TTKRSYEDQ: Predicted 66.0 2.2E+02 0.0047 31.5 24.4 28 88-115 300-327 (518)
399 PF13874 Nup54: Nucleoporin co 65.9 42 0.0009 30.4 8.6 86 198-283 40-125 (141)
400 PF15254 CCDC14: Coiled-coil d 65.9 2.6E+02 0.0057 32.4 21.3 52 181-232 480-531 (861)
401 PF07889 DUF1664: Protein of u 65.7 1E+02 0.0022 27.7 12.8 28 251-278 89-116 (126)
402 KOG4807 F-actin binding protei 65.6 1.9E+02 0.0042 30.8 26.0 29 263-291 517-545 (593)
403 PF10267 Tmemb_cc2: Predicted 65.4 2E+02 0.0043 30.9 20.1 85 89-179 211-295 (395)
404 COG1730 GIM5 Predicted prefold 65.1 1.1E+02 0.0025 28.0 13.8 40 247-286 97-136 (145)
405 PRK10361 DNA recombination pro 64.9 2.2E+02 0.0048 31.2 27.0 9 385-393 249-257 (475)
406 PF05278 PEARLI-4: Arabidopsis 64.3 1.7E+02 0.0037 29.7 14.5 53 133-185 194-246 (269)
407 PF04949 Transcrip_act: Transc 64.3 1.2E+02 0.0026 28.0 18.1 93 112-207 46-138 (159)
408 PF07989 Microtub_assoc: Micro 64.2 73 0.0016 25.9 8.8 28 152-179 6-33 (75)
409 cd07665 BAR_SNX1 The Bin/Amphi 64.0 1.6E+02 0.0034 29.2 19.5 143 184-326 21-191 (234)
410 PF03148 Tektin: Tektin family 63.4 2.1E+02 0.0045 30.4 30.9 99 192-291 248-350 (384)
411 cd07664 BAR_SNX2 The Bin/Amphi 63.1 1.6E+02 0.0035 29.1 22.6 180 134-326 3-191 (234)
412 PF01519 DUF16: Protein of unk 62.7 69 0.0015 27.7 8.7 64 101-164 34-99 (102)
413 PRK06975 bifunctional uroporph 62.4 2.8E+02 0.0061 31.6 17.1 43 151-193 383-425 (656)
414 cd07666 BAR_SNX7 The Bin/Amphi 62.4 1.7E+02 0.0037 29.1 25.3 79 192-273 160-239 (243)
415 KOG2077 JNK/SAPK-associated pr 62.3 2.7E+02 0.0058 31.3 15.1 64 107-170 311-374 (832)
416 PF09731 Mitofilin: Mitochondr 62.2 2.6E+02 0.0055 31.1 26.6 50 234-284 375-424 (582)
417 PF13874 Nup54: Nucleoporin co 61.6 62 0.0013 29.3 8.9 36 192-227 90-125 (141)
418 PF07889 DUF1664: Protein of u 61.3 1.2E+02 0.0027 27.1 12.5 50 239-288 70-119 (126)
419 KOG0992 Uncharacterized conser 60.5 2.7E+02 0.0059 30.8 28.3 48 72-119 179-226 (613)
420 KOG4657 Uncharacterized conser 60.4 1.8E+02 0.0039 28.8 19.0 19 445-463 215-233 (246)
421 PRK15178 Vi polysaccharide exp 60.2 2.5E+02 0.0055 30.4 18.7 18 274-291 353-370 (434)
422 PRK13169 DNA replication intia 60.1 53 0.0011 28.8 7.8 48 236-283 7-54 (110)
423 PRK05683 flgK flagellar hook-a 60.0 2.7E+02 0.0058 32.0 15.5 82 181-272 127-211 (676)
424 PF08172 CASP_C: CASP C termin 59.9 1.9E+02 0.0042 28.9 12.9 35 247-281 89-123 (248)
425 PF07111 HCR: Alpha helical co 59.6 3.2E+02 0.007 31.4 35.6 32 318-352 432-463 (739)
426 KOG3478 Prefoldin subunit 6, K 59.5 1.2E+02 0.0027 26.6 13.6 44 213-256 66-109 (120)
427 PF13945 NST1: Salt tolerance 59.3 23 0.00049 34.1 5.8 16 74-89 104-119 (190)
428 PF15233 SYCE1: Synaptonemal c 59.2 1.4E+02 0.003 27.0 17.2 19 247-265 92-110 (134)
429 PRK06975 bifunctional uroporph 59.1 2.9E+02 0.0063 31.5 15.6 103 186-291 343-457 (656)
430 COG5293 Predicted ATPase [Gene 59.1 2.8E+02 0.006 30.4 23.0 35 180-214 333-368 (591)
431 cd00632 Prefoldin_beta Prefold 59.0 1.1E+02 0.0025 26.0 11.2 39 251-289 63-101 (105)
432 PRK00106 hypothetical protein; 58.8 3E+02 0.0064 30.7 22.2 147 71-217 57-206 (535)
433 TIGR02132 phaR_Bmeg polyhydrox 58.7 1.7E+02 0.0037 27.9 12.7 15 319-333 165-179 (189)
434 PF06810 Phage_GP20: Phage min 58.3 93 0.002 28.8 9.6 15 299-313 87-101 (155)
435 PRK13169 DNA replication intia 58.3 60 0.0013 28.4 7.8 51 229-279 7-57 (110)
436 PF10458 Val_tRNA-synt_C: Valy 58.3 58 0.0013 25.5 7.1 18 212-229 7-24 (66)
437 PF12711 Kinesin-relat_1: Kine 57.9 68 0.0015 26.9 7.7 80 197-279 5-84 (86)
438 KOG0240 Kinesin (SMY1 subfamil 57.5 3.2E+02 0.0069 30.7 22.1 35 111-145 341-375 (607)
439 TIGR02971 heterocyst_DevB ABC 57.5 2.2E+02 0.0048 28.8 19.3 23 269-291 183-205 (327)
440 PF03999 MAP65_ASE1: Microtubu 57.4 53 0.0012 37.0 9.4 19 254-272 346-364 (619)
441 PF04728 LPP: Lipoprotein leuc 57.3 88 0.0019 24.2 8.1 45 112-156 4-48 (56)
442 KOG4403 Cell surface glycoprot 57.2 2.9E+02 0.0062 30.0 19.1 35 295-329 391-425 (575)
443 PF11180 DUF2968: Protein of u 57.0 1.9E+02 0.0041 27.9 13.9 69 105-173 99-167 (192)
444 PF05546 She9_MDM33: She9 / Md 57.0 2E+02 0.0043 28.1 14.6 29 263-291 97-125 (207)
445 TIGR01069 mutS2 MutS2 family p 56.9 2E+02 0.0043 33.5 14.0 49 240-288 539-588 (771)
446 PF11180 DUF2968: Protein of u 56.9 1.9E+02 0.0041 27.9 13.6 82 88-169 103-184 (192)
447 cd07647 F-BAR_PSTPIP The F-BAR 56.8 2E+02 0.0044 28.1 17.6 76 253-328 108-187 (239)
448 PF07200 Mod_r: Modifier of ru 56.7 1.5E+02 0.0033 26.6 16.0 16 310-325 126-141 (150)
449 PF13094 CENP-Q: CENP-Q, a CEN 56.0 1.6E+02 0.0035 26.9 13.7 38 128-165 37-74 (160)
450 PRK13729 conjugal transfer pil 55.9 44 0.00095 36.4 7.9 9 455-463 326-334 (475)
451 PF12004 DUF3498: Domain of un 55.9 3.8 8.2E-05 44.8 0.0 61 130-190 374-438 (495)
452 PRK10803 tol-pal system protei 55.5 76 0.0016 31.8 9.2 58 211-268 42-99 (263)
453 PRK08147 flgK flagellar hook-a 54.9 3.3E+02 0.0072 30.1 15.2 19 253-271 195-213 (547)
454 PF08172 CASP_C: CASP C termin 54.8 1.6E+02 0.0035 29.4 11.3 52 179-230 84-135 (248)
455 PF05546 She9_MDM33: She9 / Md 54.8 2.1E+02 0.0046 27.9 16.9 67 135-201 12-80 (207)
456 PF06120 Phage_HK97_TLTM: Tail 54.6 2.6E+02 0.0057 28.8 21.5 9 456-464 276-284 (301)
457 PRK10869 recombination and rep 54.6 3.5E+02 0.0075 30.2 27.5 45 102-146 155-199 (553)
458 PF14389 Lzipper-MIP1: Leucine 54.5 1E+02 0.0023 25.7 8.5 77 257-333 7-86 (88)
459 PF07851 TMPIT: TMPIT-like pro 54.4 1.6E+02 0.0035 30.7 11.5 20 195-214 39-58 (330)
460 PF08580 KAR9: Yeast cortical 54.2 3.9E+02 0.0085 30.7 25.6 20 309-328 310-329 (683)
461 PF06008 Laminin_I: Laminin Do 52.9 2.4E+02 0.0053 27.9 32.2 83 88-170 29-111 (264)
462 PF12130 DUF3585: Protein of u 52.8 1.8E+02 0.0039 26.4 13.3 86 245-333 41-128 (142)
463 PF15035 Rootletin: Ciliary ro 52.3 2.2E+02 0.0047 27.1 17.9 98 238-344 75-172 (182)
464 PF11570 E2R135: Coiled-coil r 52.2 1.8E+02 0.004 26.3 12.9 100 121-227 11-116 (136)
465 PF03961 DUF342: Protein of un 51.8 94 0.002 33.5 9.9 33 251-283 375-407 (451)
466 PF14073 Cep57_CLD: Centrosome 51.7 2.2E+02 0.0048 27.1 22.2 27 86-112 7-33 (178)
467 TIGR03495 phage_LysB phage lys 51.6 1.9E+02 0.0041 26.3 11.0 77 196-272 20-96 (135)
468 KOG4001 Axonemal dynein light 51.6 1.8E+02 0.004 28.3 10.4 71 94-170 182-252 (259)
469 PF10226 DUF2216: Uncharacteri 51.5 2.3E+02 0.005 27.3 14.6 152 211-387 18-183 (195)
470 KOG0993 Rab5 GTPase effector R 51.2 3.5E+02 0.0075 29.2 26.2 177 87-267 296-499 (542)
471 TIGR03794 NHPM_micro_HlyD NHPM 51.0 3.3E+02 0.0071 28.9 18.9 142 150-291 93-246 (421)
472 PRK10803 tol-pal system protei 51.0 1.1E+02 0.0023 30.7 9.5 64 109-172 38-101 (263)
473 KOG0972 Huntingtin interacting 50.9 3E+02 0.0065 28.4 15.6 132 134-276 229-367 (384)
474 PF02090 SPAM: Salmonella surf 50.2 2.1E+02 0.0045 26.3 17.5 119 99-217 11-144 (147)
475 PF05700 BCAS2: Breast carcino 50.2 2.5E+02 0.0054 27.3 16.8 118 155-275 99-220 (221)
476 PRK10476 multidrug resistance 49.6 3.1E+02 0.0066 28.1 18.3 119 114-236 82-207 (346)
477 PF05837 CENP-H: Centromere pr 49.6 1.7E+02 0.0037 25.2 10.4 91 214-347 1-91 (106)
478 PF12072 DUF3552: Domain of un 49.4 2.4E+02 0.0053 26.9 18.3 126 142-276 27-152 (201)
479 smart00502 BBC B-Box C-termina 49.0 1.6E+02 0.0035 24.7 17.1 122 192-330 4-127 (127)
480 PRK11546 zraP zinc resistance 48.7 1.9E+02 0.004 26.6 9.7 73 194-266 46-118 (143)
481 PF01920 Prefoldin_2: Prefoldi 48.7 1.6E+02 0.0034 24.5 12.4 77 212-288 1-99 (106)
482 PF01442 Apolipoprotein: Apoli 48.6 2.1E+02 0.0045 25.9 28.5 192 94-304 2-202 (202)
483 cd00584 Prefoldin_alpha Prefol 48.4 1.9E+02 0.0041 25.3 12.2 87 204-290 1-126 (129)
484 TIGR00414 serS seryl-tRNA synt 48.4 1.4E+02 0.003 32.1 10.3 70 195-264 30-103 (418)
485 PF10458 Val_tRNA-synt_C: Valy 48.4 1.1E+02 0.0025 23.8 7.4 66 206-271 1-66 (66)
486 smart00502 BBC B-Box C-termina 48.4 1.7E+02 0.0036 24.7 15.6 99 114-212 3-103 (127)
487 PF05531 NPV_P10: Nucleopolyhe 48.1 1.4E+02 0.003 24.4 7.9 58 201-258 3-63 (75)
488 cd07651 F-BAR_PombeCdc15_like 48.0 2.7E+02 0.0059 27.0 17.5 127 198-327 56-183 (236)
489 PF04949 Transcrip_act: Transc 47.9 2.3E+02 0.005 26.2 17.3 113 173-285 30-146 (159)
490 PF07111 HCR: Alpha helical co 47.8 4.9E+02 0.011 30.0 38.9 278 75-368 365-687 (739)
491 PF10779 XhlA: Haemolysin XhlA 47.7 1.2E+02 0.0027 24.0 7.6 55 211-265 1-55 (71)
492 TIGR03319 YmdA_YtgF conserved 47.6 4.3E+02 0.0093 29.2 22.3 137 75-211 47-194 (514)
493 TIGR02894 DNA_bind_RsfA transc 47.5 2.4E+02 0.0052 26.5 10.3 73 202-274 83-155 (161)
494 PRK10636 putative ABC transpor 47.4 1.6E+02 0.0034 33.3 11.1 83 198-280 552-634 (638)
495 PF01519 DUF16: Protein of unk 47.3 1.5E+02 0.0033 25.6 8.3 75 172-249 24-100 (102)
496 COG1730 GIM5 Predicted prefold 47.0 2.3E+02 0.0051 26.0 12.7 84 208-291 5-134 (145)
497 PF04728 LPP: Lipoprotein leuc 46.4 1.4E+02 0.003 23.2 7.6 49 194-242 2-50 (56)
498 PF08232 Striatin: Striatin fa 46.3 2E+02 0.0043 25.9 9.6 64 172-235 9-72 (134)
499 COG2900 SlyX Uncharacterized p 46.0 1.4E+02 0.003 24.3 7.4 53 205-257 4-56 (72)
500 PRK12714 flgK flagellar hook-a 46.0 4.9E+02 0.011 29.5 14.9 124 137-270 70-207 (624)
No 1
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.9e-46 Score=400.76 Aligned_cols=321 Identities=18% Similarity=0.257 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 160 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ 160 (473)
+.-.-..+..++.|++.+.....++...|++++++|+.++....+........+..+...|...+.++..+.+.+..+..
T Consensus 277 le~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ 356 (1200)
T KOG0964|consen 277 LENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD 356 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 33344446678888888888888999999999999999999999999999999999999999999998888888777666
Q ss_pred HHHHHHHHhhchHHHHH----------HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 161 QNDLHIQREGGLEMNIA----------NL--QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 161 ei~~L~~kl~~le~rl~----------~L--K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
+...+...+..++.+.. +| |.+||.|+++++ .+..-|.........++.++.+++.++.+..++|..
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~ 436 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKE 436 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555444 44 999999999999 999999999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhh
Q 011982 228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAG 307 (473)
Q Consensus 228 L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~ 307 (473)
+...+++.+.+|..+.+.+..++..++++.+.|+.||||+++|+..+.++..+|..++..|..| |.
T Consensus 437 l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~-------~~------- 502 (1200)
T KOG0964|consen 437 LESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT-------MN------- 502 (1200)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc
Q 011982 308 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG 387 (473)
Q Consensus 308 ~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns 387 (473)
+++++||.+|+.|+..+++.||||||+|||. | +++|+|||| |+||||
T Consensus 503 --------------------------r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~---v-~~~f~tavE---vtaGNs 549 (1200)
T KOG0964|consen 503 --------------------------RSVANGIDSVRKIKEELKPNGVFGTVYELIK---V-PNKFKTAVE---VTAGNS 549 (1200)
T ss_pred --------------------------chhhhhhHHHHHHHHHhcccccceehhhhhc---C-CHHHHhHHh---hhcccc
Confidence 9999999999999999999999999999999 9 999999999 999999
Q ss_pred --ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccccccCCCCcccccCCc----cccCcchhHH
Q 011982 388 --INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA----PLIGAPFRLV 454 (473)
Q Consensus 388 --~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p~~~~~~~~~vPl~~~----~~~~~~f~~~ 454 (473)
|+|| ||++||+||..++++++||||||||||+.++++ .||. .+|++|||++ |.|.+||+-|
T Consensus 550 LF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v--~yp~----~sdaiPli~kl~y~p~fdka~k~V 617 (1200)
T KOG0964|consen 550 LFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDV--EYPK----DSDAIPLISKLRYEPQFDKALKHV 617 (1200)
T ss_pred eEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhc--cCCC----CCCccchHHHhCcchhhHHHHHHH
Confidence 9999 999999999999999999999999999999999 9999 7999999999 9999998855
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.88 E-value=2.1e-19 Score=209.34 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=59.3
Q ss_pred CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCc
Q 011982 351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEV 421 (473)
Q Consensus 351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~ 421 (473)
.++|+||+|++|+. | +++|.+|++ ++.|+. +||| ++++|..++.++...+.||+||||||.+.+
T Consensus 519 ~~~g~~g~l~dli~---v-~~~y~~Aie---~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~ 585 (1164)
T TIGR02169 519 SIQGVHGTVAQLGS---V-GERYATAIE---VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRD 585 (1164)
T ss_pred CCCCceecHHHhcC---c-CHHHHHHHH---HHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCC
Confidence 36899999999999 8 899999999 999988 8888 999999999999988999999999998874
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.87 E-value=3.4e-19 Score=208.76 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=99.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCcccccccccccc
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV 378 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e 378 (473)
+...+..+...+..+..+.+.+..+.+.|...... .+|..++....... ++||||||++|+. | +.+|.+|++
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~-~~Gv~G~v~~li~---v-~~~y~~Aie 536 (1163)
T COG1196 465 LERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESG-LPGVYGPVAELIK---V-KEKYETALE 536 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhcc-CCCccchHHHhcC---c-ChHHHHHHH
Confidence 34444444444455555555555555555554444 55666665554444 9999999999999 8 789999999
Q ss_pred ccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccccccCCCCccccc----CCc-cccCcc
Q 011982 379 VAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPL----TDA-PLIGAP 450 (473)
Q Consensus 379 ~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p~~~~~~~~~vPl----~~~-~~~~~~ 450 (473)
++.|++ |||| ++.+|...+.+|...++||+||||||++.+... .+|.+ .++.+|+ ++. |.|.++
T Consensus 537 ---~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~--~~~~~---~~g~~~~a~dli~~d~~~~~~ 608 (1163)
T COG1196 537 ---AALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRS--LKSDA---APGFLGLASDLIDFDPKYEPA 608 (1163)
T ss_pred ---HHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccc--ccccc---ccchhHHHHHHhcCCHHHHHH
Confidence 999999 9999 999999999999999999999999999997776 33331 3555653 333 556665
Q ss_pred hh
Q 011982 451 FR 452 (473)
Q Consensus 451 f~ 452 (473)
|.
T Consensus 609 ~~ 610 (1163)
T COG1196 609 VR 610 (1163)
T ss_pred HH
Confidence 54
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6.6e-16 Score=172.54 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=85.5
Q ss_pred hhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCc
Q 011982 334 QSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGE 410 (473)
Q Consensus 334 ~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gr 410 (473)
++-..=|.|+.+......|+|+||-|+||-. + +.+|.+|.= ||+.. ++|| |-++|..-+++|-+-+.||
T Consensus 597 ~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~---I-d~kYDvAIs----Tac~~LdyiVVdt~e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 597 RSRNKVLDALMRLKESGRIPGFYGRLGDLGA---I-DEKYDVAIS----TACARLDYIVVDTIETAQECINFLKKNNLGR 668 (1293)
T ss_pred hhhhHHHHHHHHHHHcCCCCccccccccccc---c-chHHHHHHH----HhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence 4455567888887777779999999999998 7 999999887 47777 8888 9999999999999999999
Q ss_pred eeeecCCCCCcchhhhccccccCCCCcccc-cCCc-----cccCcchh
Q 011982 411 IVQIPLDDKEVQDLELQVVESYTDKVAAVP-LTDA-----PLIGAPFR 452 (473)
Q Consensus 411 itf~PLn~~~~~~~~~~~p~~~~~~~~~vP-l~~~-----~~~~~~f~ 452 (473)
-||||||+|..+.-.+.++. ...-|| |+|. |.|.+||=
T Consensus 669 aTFi~LDki~~~~~~l~~i~----tpenvPRLfDLv~~~d~~~r~aFY 712 (1293)
T KOG0996|consen 669 ATFIILDKIKDHQKKLAPIT----TPENVPRLFDLVKCKDEKFRPAFY 712 (1293)
T ss_pred eeEEehHhhhhhhhccCCCC----CCCCcchHhhhhccCCHHHHHHHH
Confidence 99999999996655444444 344455 4444 77777774
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.62 E-value=1e-12 Score=153.11 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=52.7
Q ss_pred CccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchh
Q 011982 352 LTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDL 424 (473)
Q Consensus 352 l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~ 424 (473)
+.|++|++.+++. | +++|..+++ ...|+. ++|| +..+|...+..+.....|+++|+||+.+..+.+
T Consensus 518 ~~~~~g~~~~li~---~-~~~~~~a~~---~~~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~ 586 (1179)
T TIGR02168 518 LSGILGVLSELIS---V-DEGYEAAIE---AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586 (1179)
T ss_pred cCCCccchhceee---e-ChhHHHHHH---HHHHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccc
Confidence 4678999999998 6 789999998 555555 4777 777777767777777899999999999976544
No 6
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.2e-12 Score=138.39 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=53.2
Q ss_pred ccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhc--ccccccCCceeeecCCCCCcchh
Q 011982 355 DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLS--SSEAEYSGEIVQIPLDDKEVQDL 424 (473)
Q Consensus 355 v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~--~~~~~~~gritf~PLn~~~~~~~ 424 (473)
|+|.++.||. |-+..|-||++ ++||+. .||| ++.|+..|++ .+.+ |||.||||.|....+
T Consensus 521 V~G~Va~Li~---vkd~~~~tAle---~~aGgrLynvVv~te~tgkqLLq~g~l~r----RvTiIPLnKI~s~~~ 585 (1174)
T KOG0933|consen 521 VKGLVAKLIK---VKDRSYATALE---TTAGGRLYNVVVDTEDTGKQLLQRGNLRR----RVTIIPLNKIQSFVL 585 (1174)
T ss_pred HHHHHHHHhe---eCcchHHHHHH---HHhcCcceeEEeechHHHHHHhhcccccc----eeEEEechhhhhccC
Confidence 7999999999 85677999999 999999 8889 8999999987 5655 799999999998777
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.29 E-value=1.5e-08 Score=119.70 Aligned_cols=167 Identities=28% Similarity=0.302 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 251 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~ 251 (473)
++.++..+..++..|......+...|..+...+..+...+..+...+..++..+..+..++..+...+..+...+..++.
T Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~ 884 (1163)
T COG1196 805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555444444444444444444444444444444444444444444443333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------h---------------hchhchHHHHHHhhhh
Q 011982 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-------T---------------SEQKDFSTQIEAAGAL 309 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae-------~---------------~~~~dMe~ql~~~~~~ 309 (473)
++..+..+...+..+..++...++.+...+..++..+...+ . ..+..|+.+|.++|++
T Consensus 885 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~V 964 (1163)
T COG1196 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPV 964 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCC
Confidence 33333333333333333333333333333322222221111 0 1678899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982 310 IDKLITENIELVEKVNDLSVKLDRQSVAA 338 (473)
Q Consensus 310 ~~~l~~Ey~~L~~k~neL~~~~~~~~~~~ 338 (473)
+..+++||.++.+||++|..+..|+..++
T Consensus 965 N~~Aiee~e~~~~r~~~l~~~~~dl~~a~ 993 (1163)
T COG1196 965 NLRAIEEYEEVEERYEELKSQREDLEEAK 993 (1163)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987664
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.25 E-value=3.4e-08 Score=115.75 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=39.1
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA 338 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~ 338 (473)
++..+..+|..+|+++..++.+|.++.++|.+|..|++|...+.
T Consensus 959 ~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~ 1002 (1164)
T TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002 (1164)
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999886553
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.20 E-value=5.5e-08 Score=113.72 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=32.2
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHH----HhhhhhhhhhhhhhHH
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELV----EKVNDLSVKLDRQSVA 337 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~----~k~neL~~~~~~~~~~ 337 (473)
.+..+..+|+.+|+ +++||.++. ++|.||..|++|+..+
T Consensus 966 ~~~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~ 1008 (1179)
T TIGR02168 966 DEEEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQ 1008 (1179)
T ss_pred CHHHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888 778888877 8999999999998766
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.17 E-value=4.9e-08 Score=99.10 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-------HHHHHhhchHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK--------EATLEETIKQLRNQND-------LHIQREGGLEMN 175 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk--------e~~le~eLeeLe~ei~-------~L~~kl~~le~r 175 (473)
..+..|++++..+..++..|+.+...|..+|..+... ...+..+|..++..++ .+..+.+.+...
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 4678899999999999999999999999999988776 2234455555555544 444456666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH---------
Q 011982 176 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI--------- 246 (473)
Q Consensus 176 l~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~--------- 246 (473)
+..|+..++.+......++..+..++..++........++..+..|..+|.++.. .|.+.+..+...+
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~---~heeEi~~L~~~~~~~~~~e~~ 160 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ---NHEEEIEELREQIQSSVTVEVD 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTSTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceeec
Confidence 7777888888888888999999999999999999999999999999999998766 3333333333222
Q ss_pred -----------HHHHHHHH-------------------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011982 247 -----------TQLRMQVV-------------------ELE-------ESRNNLLQENRQLKENVSSLRSQLSSDESK-- 287 (473)
Q Consensus 247 -----------~~Lk~q~~-------------------eL~-------deRK~LwrEe~kL~~~i~~L~~eL~~ae~~-- 287 (473)
.+++.++. .+. .....+..|...++..+++|..++..+...
T Consensus 161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 11222221 111 222234444445555555555555544444
Q ss_pred -----HHhhhh----------hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 288 -----KLQHAT----------SEQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 288 -----l~~ae~----------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
+..++. ..+..++.+|..++..+..+..||++|++
T Consensus 241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 333321 17999999999999999999999999997
No 11
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1e-08 Score=115.20 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=69.4
Q ss_pred CccccccccccccCCcccc-ccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhc
Q 011982 352 LTSDTEPMSESSDNMSSLN-NRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQ 427 (473)
Q Consensus 352 l~~v~g~l~el~~~~~v~~-~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~ 427 (473)
.+||||-|+||+.| + .+|+.|+- +.-|-- .|+| +..||.--+.++-.--.|--||+|||.|.+.++...
T Consensus 501 fPgv~GrviDLc~p----t~kkyeiAvt---~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~ 573 (1141)
T KOG0018|consen 501 FPGVYGRVIDLCQP----TQKKYEIAVT---VVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEK 573 (1141)
T ss_pred CCCccchhhhcccc----cHHHHHHHHH---HHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchhhhhcCccccc
Confidence 59999999999996 5 78999887 554444 8888 899999999998877789999999999998887656
Q ss_pred cccccCCCCcccccCCc----cccCcch
Q 011982 428 VVESYTDKVAAVPLTDA----PLIGAPF 451 (473)
Q Consensus 428 ~p~~~~~~~~~vPl~~~----~~~~~~f 451 (473)
.|. -.++.-.+|. |.|.+|+
T Consensus 574 lr~----~~g~rlv~Dvi~ye~e~eka~ 597 (1141)
T KOG0018|consen 574 LRE----LGGVRLVIDVINYEPEYEKAV 597 (1141)
T ss_pred ccC----cCCeEEEEEecCCCHHHHHHH
Confidence 665 3445555666 5555544
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.87 E-value=1.3e-05 Score=96.91 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=36.8
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA 338 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~ 338 (473)
.+.++..|++...-+-..+..++..|...+.+|+.++.++..++
T Consensus 1190 ~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k 1233 (1930)
T KOG0161|consen 1190 SLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEK 1233 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 68888889999999999999999999998888888887665443
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.87 E-value=1.8e-05 Score=90.25 Aligned_cols=230 Identities=15% Similarity=0.132 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 148 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
....+.++..+...++..+.++++++.++..+++.-......-..-..+|...+..++.+..+...++.++......|..
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666665555555555555444444566677778888888888888888888888888888
Q ss_pred HHHHhHhHHHHHhchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hchhchH
Q 011982 228 WTQMESVSKETIAGLSVDI-TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQKDFS 300 (473)
Q Consensus 228 L~~ei~~~~e~L~~l~~e~-~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~------~~~~dMe 300 (473)
++.....+...|..++.+. +.+..++.+..++++.|..+..+|...+.+|..+++.....+..-+. +.+-++.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888888888888888775 88888899999999999999999999999998888888777754421 1333334
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhh---hhhhhhhhcccCC--ccccccccccccCCccccccccc
Q 011982 301 TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG---LSSAIGSDAVTAL--TSDTEPMSESSDNMSSLNNRLET 375 (473)
Q Consensus 301 ~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~G---l~s~~~~~~~~~l--~~v~g~l~el~~~~~v~~~~~~t 375 (473)
.+|+.....+..+ ..=++|.-.+=| .+.+..|.+.+.- +..-|||+-.+. +.+.+|-.
T Consensus 450 k~i~~~~~~l~~l--------------k~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vt---l~~~KWa~ 512 (1074)
T KOG0250|consen 450 KKIENISEELKDL--------------KKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVT---LKEPKWAL 512 (1074)
T ss_pred HHHHHHHHHHHHH--------------HhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeE---ecCcHHHH
Confidence 3333333322222 222222222333 2333444444432 566899999999 65889999
Q ss_pred cccccccccCCc--ceee-cCCCch
Q 011982 376 QGVVAVKEDRNG--INGV-HADPPP 397 (473)
Q Consensus 376 ~~e~~~~~agns--~vvv-~d~~a~ 397 (473)
++| -.-||. ..+| +..-+.
T Consensus 513 aIE---~~L~n~lnaFiv~sh~D~~ 534 (1074)
T KOG0250|consen 513 AIE---RCLGNLLNAFIVTSHKDAR 534 (1074)
T ss_pred HHH---HHHHHhhhhheeCCHhhHH
Confidence 999 777888 5555 433333
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.84 E-value=0.00013 Score=79.05 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=36.5
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 337 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~ 337 (473)
++.+|...+.-++-.-+.+..|.++|+.-+--|...++..+.+
T Consensus 418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7888888888888899999999999999888888877776443
No 15
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=98.78 E-value=7.2e-10 Score=96.47 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=68.1
Q ss_pred ccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhhhccc
Q 011982 353 TSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVV 429 (473)
Q Consensus 353 ~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~~~~p 429 (473)
.||||+|++++. | +++|++|+| +.-|+. +||| +..+|..+++.+...+.||+|||||+.+.........+
T Consensus 2 ~gv~G~l~dli~---v-~~~~~~Ave---~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~ 74 (120)
T PF06470_consen 2 PGVLGRLADLIE---V-DPKYEKAVE---AALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSAD 74 (120)
T ss_dssp TTEEEEGGGSEE---E-SGGGHHHHH---HHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCG
T ss_pred CCeeeeHHhcee---c-CHHHHHHHH---HHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchh
Confidence 588999999999 8 999999999 888888 8888 88999999999998899999999999999887631221
Q ss_pred cccCCCCcccccCCc
Q 011982 430 ESYTDKVAAVPLTDA 444 (473)
Q Consensus 430 ~~~~~~~~~vPl~~~ 444 (473)
.. .....+.||+|.
T Consensus 75 ~~-~~~~~~~~l~d~ 88 (120)
T PF06470_consen 75 QI-RPPGGAGPLIDL 88 (120)
T ss_dssp GH-HSTTSEEEGGGG
T ss_pred hc-cCCcchHHHHHh
Confidence 10 012467888766
No 16
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1e-05 Score=90.73 Aligned_cols=211 Identities=17% Similarity=0.184 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET------ 154 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e------ 154 (473)
+.+.-.....++..+..++..+...+..+.....++..+.....+++..++-.++.|+.+|....+........
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 33334456777888888888888888888888899999999999999999999999999999887764433333
Q ss_pred --------HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 011982 155 --------IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------------ALEQKISQLRDESAALNMKRAS 213 (473)
Q Consensus 155 --------LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------------~Le~~I~~l~~el~~L~~ei~~ 213 (473)
|..+.-....+..+...+..|+..++..+..++.++- =+...|..+...+.+.......
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3344444444444455556666666555555554331 3567788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
++.++..++.++.....++..+...+.+...++.++-..+..+..++.++.+.++.||++...|++.+.+.+..|+++
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999988888888889999999999999999999999999999999999999999999999999999999988
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.73 E-value=5.3e-05 Score=91.13 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh-h-----chhchHHHHHHhhhhHHH
Q 011982 242 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS---QLSSDESKKLQHAT-S-----EQKDFSTQIEAAGALIDK 312 (473)
Q Consensus 242 l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~---eL~~ae~~l~~ae~-~-----~~~dMe~ql~~~~~~~~~ 312 (473)
.+..+.++..+..++.+.|..+..+..+|...++.|.. .+..+...+..... + --..+...++..+...-.
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~ 642 (1486)
T PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERE 642 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666666666666666555543 34444444433310 0 111122344455556666
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc--cee
Q 011982 313 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--ING 390 (473)
Q Consensus 313 l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vv 390 (473)
+..+...+..+...|..++..+....|=.-.+-......++||+ |+|+|+. | ...|.-+++ +.-|.+ ++|
T Consensus 643 ~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~~~~~~Gvl--vsel~~~--v-~~~~~~~~~---A~lg~~~~~iV 714 (1486)
T PRK04863 643 LTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVL--LSEIYDD--V-SLEDAPYFS---ALYGPARHAIV 714 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHHHHhcCCee--hhHhhhc--c-CcchHHHHH---HHHHhhhCeEE
Confidence 77788888888888888888877755543221111124578888 9999984 3 555665555 444555 788
Q ss_pred e-cCCCchhhhcccccccCCceeee
Q 011982 391 V-HADPPPLVLSSSEAEYSGEIVQI 414 (473)
Q Consensus 391 v-~d~~a~~~~~~~~~~~~gritf~ 414 (473)
| +.+.|..-+++|+. -++-|.+|
T Consensus 715 v~d~~~A~~ai~~L~~-~p~d~~li 738 (1486)
T PRK04863 715 VPDLSDAAEQLAGLED-CPEDLYLI 738 (1486)
T ss_pred eCCHHHHHHHHHhccC-Cccceeee
Confidence 8 78888888899987 56677777
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.69 E-value=0.00011 Score=89.18 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.+..++...+..+..+...+..+...+...+.++..+...+++....++.+...+.+|..++.+|.++.......+.++.
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555544444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 272 ENVSSLRSQLSSDESKK 288 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l 288 (473)
+....|..++..+...+
T Consensus 1125 k~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1125 RQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.64 E-value=5.8e-05 Score=83.28 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHhHHHH-------HhchHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEER----------LKLLEADKDSWTQMESVSKET-------IAGLSVDITQLRMQVV 254 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leee----------ie~Le~EI~~L~~ei~~~~e~-------L~~l~~e~~~Lk~q~~ 254 (473)
.+...+...+.....+..++..+... +..+..++..+.......... .+.+...+..+..+++
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555 445555555555544444433 4444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------hchhchHHHHHHhhhhHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT----------------------SEQKDFSTQIEAAGALIDK 312 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~----------------------~~~~dMe~ql~~~~~~~~~ 312 (473)
.+..++..++.....|+.....++..+......+..... ..+..+..+|.+ |+++-.
T Consensus 394 eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ 472 (569)
T PRK04778 394 EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINME 472 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHH
Confidence 555666666666666666655555555555555543321 188999999999 999999
Q ss_pred HHH-HHHHHHHhhhhhhhhhhhhhHHhhhh
Q 011982 313 LIT-ENIELVEKVNDLSVKLDRQSVAAGLS 341 (473)
Q Consensus 313 l~~-Ey~~L~~k~neL~~~~~~~~~~~Gl~ 341 (473)
++. +|.+...++++|..|.+|+-.+..+.
T Consensus 473 ai~~e~~e~~~~~~~L~~q~~dL~~~a~~l 502 (569)
T PRK04778 473 AVNRLLEEATEDVETLEEETEELVENATLT 502 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999998887663
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.00021 Score=82.45 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.+...+..++.....+..++..+...+..++.++..+..++..+...+......+..+...+..+++++..++.+...++
T Consensus 353 ~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~ 432 (880)
T PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555566666666655555555555445556666777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 272 ENVSSLRSQLSSDESKK 288 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l 288 (473)
..+..+...+..++..+
T Consensus 433 ~~~~~~~~~l~~~~~~l 449 (880)
T PRK02224 433 ATLRTARERVEEAEALL 449 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777776544
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=98.60 E-value=0.00018 Score=83.08 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 139 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~ 139 (473)
.++.++..+..++..++..+..+..++.........++.++..|..
T Consensus 255 ~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455554444444444444444433
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.53 E-value=0.00012 Score=72.13 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-------EATLEETIKQLRN 160 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-------e~~le~eLeeLe~ 160 (473)
++.++..++.....+...+...+.....+..++.++.+++..++..+......+.....+ .......+..++.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333444444444444444433333333333333333 3333333333333
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
.......++..++.++...+...+.--++...+...+..+...+.........++..+..|+.+|..+...+.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333333333333444444444444444444444444444444444444433333
No 23
>PRK11637 AmiB activator; Provisional
Probab=98.50 E-value=0.00032 Score=74.73 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
..+......+......++.+...+...+.........|.....+.+..+..|..+++....+..+|......|...|.
T Consensus 173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443333333333333333333333344444444333344444444444444333
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.48 E-value=0.00044 Score=68.06 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 274 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i 274 (473)
..+.........+...+..|+.++..+...+..|.............+...+..|..++..........-+....|.+.+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444333333333333333333333333333333333333333344444444
Q ss_pred HHHHHHHHHH
Q 011982 275 SSLRSQLSSD 284 (473)
Q Consensus 275 ~~L~~eL~~a 284 (473)
+.|..+|...
T Consensus 207 d~le~eL~~~ 216 (237)
T PF00261_consen 207 DRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.00036 Score=83.99 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHH
Q 011982 212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV 254 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~ 254 (473)
..++.++..+..++..+...+......+..+...+..++..+.
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333
No 26
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.47 E-value=0.0023 Score=64.31 Aligned_cols=256 Identities=17% Similarity=0.204 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe 156 (473)
-+-....+|...-.+|.-+......+.+.+. +.-..|...+..+.+++..|..+...|..++..-.+..+.++.+++
T Consensus 18 ik~q~qekE~ky~ediei~Kekn~~Lqk~lK---LneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiE 94 (305)
T PF14915_consen 18 IKNQNQEKEKKYLEDIEILKEKNDDLQKSLK---LNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIE 94 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence 3444455566666666666666655554433 3334456677778888888888888888888877777777777777
Q ss_pred HHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 157 QLRNQNDLHIQREGG----LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 157 eLe~ei~~L~~kl~~----le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
.++..+......... -+..--.|+.+||.|+.-.-.+.-+++.++.....|.+.+...+..+..|+.++-..+..+
T Consensus 95 S~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaL 174 (305)
T PF14915_consen 95 SYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDAL 174 (305)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555333 2223335699999999999999999999999999999999999999999999998887766
Q ss_pred HhHHHHHhchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------chhch
Q 011982 233 SVSKETIAGLSVDITQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------EQKDF 299 (473)
Q Consensus 233 ~~~~e~L~~l~~e~~~Lk~q~~eL~d-------eRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~------~~~dM 299 (473)
..-.--+...+..+.+.+.++.++.. ....-......+...+..|+++---+..+|..|-.. .+-+.
T Consensus 175 rEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 175 REKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 54444455555556555555555552 222222233333333333333333333333333110 11111
Q ss_pred HHHH----HHhhhh----HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982 300 STQI----EAAGAL----IDKLITENIELVEKVNDLSVKLDRQS 335 (473)
Q Consensus 300 e~ql----~~~~~~----~~~l~~Ey~~L~~k~neL~~~~~~~~ 335 (473)
..+. ..+.+. ...+.+-|.+|++++|.|..++-+..
T Consensus 255 Q~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 255 QDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2112 111222 33367778888888888888766554
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.45 E-value=0.0017 Score=66.03 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 243 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~ 243 (473)
+.+-+.|.+..+ .+..........+..+..++..+...+..++.++..+......++..|..++
T Consensus 186 ~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 186 REELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 677777777776 6666666666666666666666666666666666666555555555555444
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.44 E-value=0.0023 Score=69.59 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
|.+.+...|+|+..|.......+..+.++...+..+
T Consensus 348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~ 383 (546)
T PF07888_consen 348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQML 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334445566666666554444444555555444333
No 29
>PRK11637 AmiB activator; Provisional
Probab=98.42 E-value=0.00038 Score=74.16 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
.++.....+...+..+..+...+..........+..|..++.....+...|.++...|...+..+
T Consensus 188 ~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 188 ELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333344444444444433
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.41 E-value=0.0029 Score=71.16 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Q 011982 105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDL---------------------RMQKEATLEETIKQLRNQND 163 (473)
Q Consensus 105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~---------------------~eqke~~le~eLeeLe~ei~ 163 (473)
.+..+.....++.+-.....++.+.|+.+|..-+.+... ..-..+..+++-+.|+.++.
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve 335 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE 335 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555544433333 22223344555667888888
Q ss_pred HHHHHhhchHHHHHHHHHHHHH------------HHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 164 LHIQREGGLEMNIANLQSEKEF------------WLQKE--A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 164 ~L~~kl~~le~rl~~LK~ERD~------------wLqkE--i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
.++.+..+++..+..||+|-.. +.+-| . .|...+-.++.-...-+.....+..+.+.+..|+..|
T Consensus 336 ~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL 415 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEEL 415 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888888888888888666542 22222 2 7888888888888888888888888888888888888
Q ss_pred HHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982 229 TQMESVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
+...+.+..++..++..+.++++|++..
T Consensus 416 ~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 416 RRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888887777643
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=0.0012 Score=79.56 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 335 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~ 335 (473)
++..|+.||.++...+.. .+|....+||..-.+++....
T Consensus 1076 ~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~ 1114 (1311)
T TIGR00606 1076 RQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTE 1114 (1311)
T ss_pred HHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888855 799999999988888776543
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.34 E-value=0.00054 Score=74.27 Aligned_cols=244 Identities=19% Similarity=0.225 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV--------ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 161 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~--------~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e 161 (473)
.+|.+|.+.+...+.+..+||-+-..|..++..+.... ...+.++..++..++.......+++..|..|..+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555555666666666666555555555554443 3446677777777777777777777788888888
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc
Q 011982 162 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 241 (473)
Q Consensus 162 i~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~ 241 (473)
+..+..++...+........+-+.|+..--.+++++..++..+..+..++..|..+...|..+|..++.+++.-----..
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d 201 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVD 201 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777777777888888777788888888888888888888888888888888887777655533322233
Q ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH------------HHhhh
Q 011982 242 LSVDITQLRMQVVELE--------ESRNNLLQEN---------RQLKENVSSLRSQLSSDESK------------KLQHA 292 (473)
Q Consensus 242 l~~e~~~Lk~q~~eL~--------deRK~LwrEe---------~kL~~~i~~L~~eL~~ae~~------------l~~ae 292 (473)
++..+..|...+.-+. +.+....++- .+|...+..++.+.+..-.. +..+.
T Consensus 202 ~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 202 LQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333333222 3333333332 23333333333333221111 01110
Q ss_pred h------------h-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982 293 T------------S-EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333 (473)
Q Consensus 293 ~------------~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~ 333 (473)
+ + ++..|...|-.+.+.+.-+..-|..|..++.+|.-|+++
T Consensus 282 ~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 282 TSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred hhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 0 1 566677777777777777888888888888888887654
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.33 E-value=0.002 Score=74.05 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHhhhhHHHHHHHH
Q 011982 302 QIEAAGALIDKLITEN 317 (473)
Q Consensus 302 ql~~~~~~~~~l~~Ey 317 (473)
++-++|+-+..+..+-
T Consensus 469 kvs~FG~~m~~lL~~I 484 (1074)
T KOG0250|consen 469 KVSAFGPNMPQLLRAI 484 (1074)
T ss_pred hhhhcchhhHHHHHHH
Confidence 4555555555555443
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.27 E-value=0.0013 Score=71.85 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQ 114 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kik 114 (473)
....+.++.++..+...+..++..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.0047 Score=71.30 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=13.1
Q ss_pred cccCcc--hhHHHHHHhhcc
Q 011982 445 PLIGAP--FRLVSFVAKYVS 462 (473)
Q Consensus 445 ~~~~~~--f~~~~~~~~~~~ 462 (473)
..|.|| |+=||.||.||-
T Consensus 1224 DEIDAALDfkNVSIVanYIk 1243 (1293)
T KOG0996|consen 1224 DEIDAALDFKNVSIVANYIK 1243 (1293)
T ss_pred hhHHHhhccccchhHHHHHH
Confidence 344555 677999999983
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.0096 Score=67.93 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.+...+.........-..+...|..++++++.++...+.++..+...++.+..++..+...+......++.+..+.....
T Consensus 798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k 877 (1174)
T KOG0933|consen 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQK 877 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 34444444444445555555666666666666666666666666666666666666666666666666665555555555
Q ss_pred HHHHHHHHHHHHHH
Q 011982 272 ENVSSLRSQLSSDE 285 (473)
Q Consensus 272 ~~i~~L~~eL~~ae 285 (473)
..+..+..++....
T Consensus 878 ~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 878 AKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHhhhHHHhhhh
Confidence 55555544444333
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.22 E-value=0.003 Score=71.16 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 166 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~ 166 (473)
.|+.+++.|..|+....+....|..++..|...-......+..+..+...|+.++.........-...+..+++++.+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888877777666666555555556666666666666655555554444444444444444444
Q ss_pred HHhhchH
Q 011982 167 QREGGLE 173 (473)
Q Consensus 167 ~kl~~le 173 (473)
.....++
T Consensus 502 ~~R~~lE 508 (697)
T PF09726_consen 502 RQRASLE 508 (697)
T ss_pred HHHHHHH
Confidence 4444333
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.22 E-value=0.011 Score=64.70 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=52.5
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h-chhchHHHHHHhhhhHHH
Q 011982 239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-----S-EQKDFSTQIEAAGALIDK 312 (473)
Q Consensus 239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~-~~~dMe~ql~~~~~~~~~ 312 (473)
+..+...+..|+..+.........+..........+.+|..++..+...+..+.. . .+.+|...|+++....+.
T Consensus 304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~ 383 (522)
T PF05701_consen 304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEE 383 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444444444444444433211 1 577888888888888888
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh
Q 011982 313 LITENIELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 313 l~~Ey~~L~~k~neL~~~~~~~ 334 (473)
+..+.......+-.+.....+.
T Consensus 384 Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 384 AKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777776655544
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.16 E-value=0.006 Score=73.07 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ 146 (473)
Q Consensus 82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq 146 (473)
.+..+.+...+..+......+.+.+......+..+...+..........+..+..++.....+..
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ 670 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444444444433
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.14 E-value=0.012 Score=65.68 Aligned_cols=181 Identities=19% Similarity=0.237 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------EKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~---------qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
|+..|-++-..+..++..+.+++.....+...|+..+.+|..++.... .....+..++..|+.++..+..+
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777666555211 22234445555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 148 EATLEETIKQLRNQNDLHIQREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 224 (473)
Q Consensus 148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~E 224 (473)
+......-..|..-......++..++.++..+ ..++...+..-.+=...+++.-.....|+.++..++...-.+..+
T Consensus 103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33332222233222233333344444444444 233444333322333344444555555666666666666666655
Q ss_pred HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982 225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
-..++..+..-.-....|...+.+++.++..+.
T Consensus 183 ~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 183 NMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444333333333333333433333333
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.022 Score=65.79 Aligned_cols=25 Identities=8% Similarity=0.286 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 261 NNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 261 K~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
..+..+...|......+...+..++
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~ 425 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELK 425 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333333
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.0032 Score=68.46 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=72.5
Q ss_pred ccccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 011982 68 AESANLAEAERQHLLQREAI---LEETVKHLRNERESHIQKEATLE---------------GTVQQLQNECDLYKEKVAT 129 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~q~e~~---~~~ei~qlE~E~~~l~q~~a~LE---------------~kikeL~eei~~~~qk~~~ 129 (473)
...-.+-+.||+-+.++=.- --+..+.||.+.+.|...+..++ ..+..+..-++.....++.
T Consensus 31 s~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~ 110 (546)
T KOG0977|consen 31 SPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK 110 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34455667777765554333 23344445555555544333333 4444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 011982 130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------ALEQKISQLRD 202 (473)
Q Consensus 130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------~Le~~I~~l~~ 202 (473)
++.++..|+.++.....++.+........+..+......++.+++.+..++..+..+..... .+...|...+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555555555544443333333333333333333333333333332222222222 33333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 203 ESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 203 el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
.++.-..-..+++..+..|-++|+++.
T Consensus 191 ~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 191 QLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333334444455555555555544
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.025 Score=61.36 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Q 011982 98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL----------HIQ 167 (473)
Q Consensus 98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~----------L~~ 167 (473)
....+.++.+.|+.++..++.-......+....+..+..++.+|...+.+.+.+..+...|+.+++. +-.
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL 339 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3344455555566666666666666666666666667777666666666666666665555554432 222
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HH---------HHHHHh
Q 011982 168 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EAD--KD---------SWTQME 232 (473)
Q Consensus 168 kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L----e~E--I~---------~L~~ei 232 (473)
+...+...+.....++|.|-+.--.++-.+...-.++..+-.....+-..|.-. ..- +. .++...
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V 419 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYV 419 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHh
Confidence 333344444445666666655544333333332222222222222222222111 000 00 001100
Q ss_pred H-hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 233 S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 233 ~-~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
. .+.+-+.+...++.........|++-+.++-.-..++.+.+..+..++..++...
T Consensus 420 ~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~ 476 (581)
T KOG0995|consen 420 KPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKY 476 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1223344444555555555555555555555555555555555555555555444
No 44
>PRK03918 chromosome segregation protein; Provisional
Probab=98.10 E-value=0.022 Score=65.85 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 304 EAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 304 ~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
..+...+..+..+...+....++|...
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~ 427 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKKA 427 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.09 E-value=0.029 Score=61.52 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~ 144 (473)
.+.++..+..++...............+...-......++..|..+|..++..+...
T Consensus 135 ~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 135 VKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777766665555555555555555666666666666666665555543
No 46
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.06 E-value=0.028 Score=68.26 Aligned_cols=235 Identities=22% Similarity=0.229 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI-------KQLRN 160 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL-------eeLe~ 160 (473)
+..++..+..++..+.....+...+++.|...+..+.+....|+.+...|+..|....+....+..+| ..+..
T Consensus 666 l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ 745 (1822)
T KOG4674|consen 666 LQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEA 745 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555555555555666777777777777777777777777777777777776555444444 44455
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 011982 161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL----NMKRASLEERLKLLEADKDSWTQMESVSK 236 (473)
Q Consensus 161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L----~~ei~~Leeeie~Le~EI~~L~~ei~~~~ 236 (473)
++..|+++..-+......|..+++.+....-.+...+..++.....+ .....+++..|..|..++..++..+..-.
T Consensus 746 ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~ 825 (1822)
T KOG4674|consen 746 ELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKS 825 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444555557777777777666666666555544443 34455667777888888888777766555
Q ss_pred HHHhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------
Q 011982 237 ETIAGLS----VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------------------ 294 (473)
Q Consensus 237 e~L~~l~----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~------------------ 294 (473)
..+..+. ..+..++..++++.-...++..+...+...+..|...+..++..|..+...
T Consensus 826 ~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~ 905 (1822)
T KOG4674|consen 826 SDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILED 905 (1822)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhH
Confidence 5555444 445677888888888888888888888888888888888888888655310
Q ss_pred -------chhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 295 -------EQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 295 -------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
++.++..++..+..-|......|.....
T Consensus 906 ~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 906 TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666555555555444
No 47
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.06 E-value=0.021 Score=63.82 Aligned_cols=246 Identities=16% Similarity=0.178 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA----TLEETIK------- 156 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~----~le~eLe------- 156 (473)
++..+.+++..++.|..+...+|.....|++.+..+...+...+.+|..+..+....++.+. .+....+
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~ 176 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNE 176 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 55566666666666666666666666666666666666666666666666555555444422 1111112
Q ss_pred ---HHHHHHHHHHHHhh----chHHHHHHH------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 011982 157 ---QLRNQNDLHIQREG----GLEMNIANL------QSEKEFWLQKEAALEQKIS--------------QLRDESAALNM 209 (473)
Q Consensus 157 ---eLe~ei~~L~~kl~----~le~rl~~L------K~ERD~wLqkEi~Le~~I~--------------~l~~el~~L~~ 209 (473)
+++.+...+.++.+ .+...+.+| +.++--.+.+...+...|. -++.....+.+
T Consensus 177 ~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E 256 (1265)
T KOG0976|consen 177 ELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEE 256 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHH
Confidence 22222222222211 123333333 1111111111112222222 22233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 011982 210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE-----------ESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~-----------deRK~LwrEe~kL~~~i~~L~ 278 (473)
....++..-..+.+...+|+..-.-+.+++++...-+..++..++.++ +.++-|.-+..+|.+..-.++
T Consensus 257 ~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir 336 (1265)
T KOG0976|consen 257 QDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR 336 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444555555555555555555555444 556677788888888888888
Q ss_pred HHHHHHHHHHHhhhhhchhchHHHHH-------HhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982 279 SQLSSDESKKLQHATSEQKDFSTQIE-------AAGALIDKLITENIELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 279 ~eL~~ae~~l~~ae~~~~~dMe~ql~-------~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~ 334 (473)
-+|-.+.++++... .++.+++.+-. .+....+.-..|.+.|..---++..|.|-+
T Consensus 337 c~LlEarrk~egfd-dk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 337 CALLEARRKAEGFD-DKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred HHHHHHHHhhcchh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777765441 02333333322 333333344445555555455555555444
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.02 E-value=0.023 Score=64.78 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM 174 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~ 174 (473)
+..-+.....+++.+|..+..|.+++..+.............+.+++.........+..+++.+.-++....+++..+++
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555554444433333333333333333333333333344444444444444433333
Q ss_pred HHHHH
Q 011982 175 NIANL 179 (473)
Q Consensus 175 rl~~L 179 (473)
++..+
T Consensus 309 ~l~~~ 313 (775)
T PF10174_consen 309 RLETL 313 (775)
T ss_pred HHHHH
Confidence 33333
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.00 E-value=0.0029 Score=62.25 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=15.0
Q ss_pred ceeecCCCchhhhcccccccCCceeeec
Q 011982 388 INGVHADPPPLVLSSSEAEYSGEIVQIP 415 (473)
Q Consensus 388 ~vvv~d~~a~~~~~~~~~~~~gritf~P 415 (473)
|+++++.+.+.|.. .++|+|-|
T Consensus 204 ~m~l~~~~~~~V~~------~d~iv~CP 225 (239)
T COG1579 204 HMKLPSQTLSKVRK------KDEIVFCP 225 (239)
T ss_pred eeeecHHHHHHHhc------CCCCccCC
Confidence 78777777664443 67777777
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.99 E-value=0.051 Score=61.58 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=19.2
Q ss_pred CcccccCCc-----cccCcchhHHHHHHhhc
Q 011982 436 VAAVPLTDA-----PLIGAPFRLVSFVAKYV 461 (473)
Q Consensus 436 ~~~vPl~~~-----~~~~~~f~~~~~~~~~~ 461 (473)
.+|+|+.+. -.=|.+..=.+|+||.+
T Consensus 640 ~ekFp~v~~~~reavt~ghageqyaf~arll 670 (1243)
T KOG0971|consen 640 QEKFPLVENCSREAVTRGHAGEQYAFAARLL 670 (1243)
T ss_pred HhhCCCccccchhhccccchhHHHHHHHHHH
Confidence 468888877 33477788889999854
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.99 E-value=0.035 Score=67.52 Aligned_cols=34 Identities=9% Similarity=0.322 Sum_probs=15.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 332 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~ 332 (473)
.+.+++.+......+.+.+..+..+.++|..+..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~ 596 (1486)
T PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARIQ 596 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 52
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.99 E-value=0.0011 Score=60.40 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982 176 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 255 (473)
Q Consensus 176 l~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e 255 (473)
+..++.+.|.|..+-..++..+..+......+..++.+|...+..++.+++.+...+......+........
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~-------- 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS-------- 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------
Confidence 345678888888888777777777777777776666666666666666666666655444444333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982 256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-----S-EQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~ 328 (473)
....|++.++-|..+|..++..|..+.. . ..+.++.+++++..........|.+|..+|+++.
T Consensus 74 ----------~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 74 ----------NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred ----------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 1115666666666666666666665532 2 6778888999999988888888888888888753
No 53
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.98 E-value=0.031 Score=67.91 Aligned_cols=251 Identities=21% Similarity=0.253 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL----------------------EETIQQLQ 138 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L----------------------E~eLkeLq 138 (473)
.......++..+..+...+..+.......+..+..|..+++.+....... +..+..|+
T Consensus 563 ~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe 642 (1822)
T KOG4674|consen 563 DKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLE 642 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHH
Confidence 44445556677777777777777777777777777777777774333322 33344444
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhc--------------hHHHHHHHHH------HHHHHHHHHH-HH
Q 011982 139 RQNDLRMQK----EATLEETIKQLRNQNDLHIQREGG--------------LEMNIANLQS------EKEFWLQKEA-AL 193 (473)
Q Consensus 139 ~eI~~~eqk----e~~le~eLeeLe~ei~~L~~kl~~--------------le~rl~~LK~------ERD~wLqkEi-~L 193 (473)
..+...... +..+...+..++.++..+...+.. ++.-+..||. +|..|++..| .-
T Consensus 643 ~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~ 722 (1822)
T KOG4674|consen 643 NELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQ 722 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433222 334444455555555555444332 2223333333 4555555555 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ----ENRQ 269 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr----Ee~k 269 (473)
+..+..+..++......+..++.++..|..+-.-+......+...+..+..+...++.-++.++-.-+.+-+ .+.+
T Consensus 723 ~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~ 802 (1822)
T KOG4674|consen 723 EQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDK 802 (1822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555544444445555555554444443333333322221111 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------h---h-------chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982 270 LKENVSSLRSQLSSDESKKLQHA-------T---S-------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l~~ae-------~---~-------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~ 331 (473)
+...+..|..+|+.+...+.... . . .+.+|..-+..+...+..+.++|+.|..++++|..++
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l 881 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRL 881 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443321 1 1 3444444444444445555555555555555555433
No 54
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.98 E-value=0.042 Score=62.88 Aligned_cols=99 Identities=23% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh--h----chhchHHHHHHhhh
Q 011982 238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK---LQHAT--S----EQKDFSTQIEAAGA 308 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l---~~ae~--~----~~~dMe~ql~~~~~ 308 (473)
....|++.++++..+..++++.-|.|.-|..+|...+......+..-...- .+.-. + +.+.+..+|+..+.
T Consensus 416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk 495 (1195)
T KOG4643|consen 416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNK 495 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556666666666666665555555544444331111 11100 0 56777778888888
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 011982 309 LIDKLITENIELVEKVNDLSVKLDRQSV 336 (473)
Q Consensus 309 ~~~~l~~Ey~~L~~k~neL~~~~~~~~~ 336 (473)
.+.....|-..|..+++||..|.+..+.
T Consensus 496 ~L~~r~~elsrl~a~~~elkeQ~kt~~~ 523 (1195)
T KOG4643|consen 496 SLNNRDLELSRLHALKNELKEQYKTCDI 523 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887766554
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0057 Score=67.88 Aligned_cols=20 Identities=30% Similarity=0.014 Sum_probs=10.8
Q ss_pred cccccccCCceeeecCCCCC
Q 011982 401 SSSEAEYSGEIVQIPLDDKE 420 (473)
Q Consensus 401 ~~~~~~~~gritf~PLn~~~ 420 (473)
...+++...+|||.|=|=|-
T Consensus 700 y~FeaRs~dEisf~pGDII~ 719 (1118)
T KOG1029|consen 700 YPFEARSHDEISFEPGDIII 719 (1118)
T ss_pred cccccCCcccccccCCCEEE
Confidence 33455555666666655443
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=97.93 E-value=0.061 Score=62.51 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
.+..+...+...+..+..++..+.
T Consensus 367 ~l~~~l~~~~~~~~~~~~~~~~l~ 390 (895)
T PRK01156 367 SYLKSIESLKKKIEEYSKNIERMS 390 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333333333333444444333333
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.033 Score=56.33 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+++..+......+...+..+..+.++...++..+-...+++.++...+..+.-++...++.+..++.++...+.
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444444444444444444444444444444443
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.035 Score=58.75 Aligned_cols=201 Identities=13% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011982 83 QREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK----QL 158 (473)
Q Consensus 83 q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe----eL 158 (473)
+.-.....+|.+++..+....+..+.|+..+++++.++.+...++......++.++..|......+..+..+-. -|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777777777777777777777777777777777666666555444331 11
Q ss_pred HHHHHHHHHH-hhc---hHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 159 RNQNDLHIQR-EGG---LEMNIA-NLQSEKEFWLQKEA--ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 231 (473)
Q Consensus 159 e~ei~~L~~k-l~~---le~rl~-~LK~ERD~wLqkEi--~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e 231 (473)
-..+..++.- ... +..... -....|-.-+-..+ .....|..+...+..|......+..+..++..-......+
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 000 000000 01222222222222 3344455555555555555555555555554444444444
Q ss_pred hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 232 ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 232 i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
...+..-+.+-+....++...+...+...++|......|...+.++..+...
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~ 249 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK 249 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556666666666666667777777777777777655553
No 59
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.042 Score=59.66 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQND-------LRMQKEATLEETIKQLRNQN 162 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~-------~~eqke~~le~eLeeLe~ei 162 (473)
.++..++...+.+...+. .+......++++..+.+.+...+..++.-.. .+.+.++.+..+++..+.++
T Consensus 235 ~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~ 310 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI 310 (581)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 2222233334444444444444444433333 33333444444444444444
Q ss_pred HHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 011982 163 DLHIQREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETI 239 (473)
Q Consensus 163 ~~L~~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L 239 (473)
+.+..+...|+..+..- -++....-.....+...+..+..+++.+.+.+-+++.+++..=.+|..+-...+.+-.+|
T Consensus 311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333322211 222222222233555556666666666666655555555444444444333333222222
Q ss_pred hchHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 240 AGLSV------------------------------DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 240 ~~l~~------------------------------e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
.---. -+.....++.+...+.-.|..-...+...+..+...+...+-.+.
T Consensus 391 ~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~ 470 (581)
T KOG0995|consen 391 KLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELK 470 (581)
T ss_pred HHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 002223334444444445666666666666666666666666666
Q ss_pred hhhh-----------------hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 290 QHAT-----------------SEQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 290 ~ae~-----------------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
.++. .+++-|+.++....-.+...+.+-.+++.
T Consensus 471 ~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~ 520 (581)
T KOG0995|consen 471 KAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVK 520 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6632 06677776666666666665555555544
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.88 E-value=0.025 Score=63.00 Aligned_cols=89 Identities=20% Similarity=0.248 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 011982 80 HLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---------EAT 150 (473)
Q Consensus 80 ~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---------e~~ 150 (473)
++-|.-+.-..--.++..+...|.++++.+-..+..|..+.......+..|+.+|..|+.++...... +..
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~ 84 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ 84 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH
Confidence 44455555555667788888889999999999999999999999999999999999988777654321 223
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011982 151 LEETIKQLRNQNDLHIQR 168 (473)
Q Consensus 151 le~eLeeLe~ei~~L~~k 168 (473)
+..++..|+++++.+..+
T Consensus 85 Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555554443
No 61
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.88 E-value=0.01 Score=67.88 Aligned_cols=112 Identities=10% Similarity=0.128 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 259 (473)
Q Consensus 180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de 259 (473)
..++..+....-.+.+.+..+.....-+...+..|+.++..+.+++......+......+....+.+......+..+..+
T Consensus 247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~ 326 (1072)
T KOG0979|consen 247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNK 326 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444344444444444444555555555555555555555555544444444444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 260 RNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 260 RK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
...|.+........+.++...+..++..+..+
T Consensus 327 le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 327 LESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555555555555555555555555555555
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.096 Score=60.10 Aligned_cols=137 Identities=16% Similarity=0.098 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL---RDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 152 e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l---~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
.-+++.++..+..+....+.++.....+..|++.++...-.+....... +..++.+.....++......+...|..+
T Consensus 414 s~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknl 493 (1195)
T KOG4643|consen 414 SKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNL 493 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666667677777777778877776555444444433 4555566666667777777777778888
Q ss_pred HHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.+.+++....++.+.+.++.++.|+..+.-.+..+-..-..|...+..++.+-.-+...+
T Consensus 494 nk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 494 NKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888887778888888777777777777776666655555555555555554444444444
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.87 E-value=0.027 Score=64.18 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
++...+..+...|...++.|+.++......+
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l 495 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQL 495 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3334455555555555555555555555444
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.84 E-value=0.0085 Score=67.65 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 157 (473)
Q Consensus 78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee 157 (473)
-+..+|.|..|...+..+.+.-+.+...+..+..+..+|+.++..+.+.+......+..|+.++.........++.+|.+
T Consensus 434 Lq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 434 LQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444555555555555555555555555555555555555555544444444444444
Q ss_pred H
Q 011982 158 L 158 (473)
Q Consensus 158 L 158 (473)
.
T Consensus 514 E 514 (697)
T PF09726_consen 514 E 514 (697)
T ss_pred H
Confidence 3
No 65
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.046 Score=55.25 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL 151 (473)
Q Consensus 91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~l 151 (473)
....+..+...+...+..+..+++++.+...++..+...+-.++..|+..-...-.....+
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555555444444444443333333
No 66
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.79 E-value=0.057 Score=54.95 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh---chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982 268 RQLKENVSSLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 268 ~kL~~~i~~L~~eL~~ae~~l~~ae~~---~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~ 329 (473)
..+.+.+..|+.++.++...+..+... ++..+-...+.++..+-.+..-.+..++|...||-
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R 289 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCR 289 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777666555321 34444455566666677777777777777777774
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.053 Score=60.89 Aligned_cols=205 Identities=15% Similarity=0.190 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 011982 74 AEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK------ 147 (473)
Q Consensus 74 ~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk------ 147 (473)
++.+-+.+...-..++..|+.++-++..+.+....+....++|++++.........+.++...|+.++.-....
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 33344556666667888888888888888888888888888888888888888888888888887777622211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Q 011982 148 ----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-------------ALEQKISQLRDESAALNMK 210 (473)
Q Consensus 148 ----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-------------~Le~~I~~l~~el~~L~~e 210 (473)
.....+.+..+..+...+..++..+...+....+-+..|-.... ..+..+..+...+.....+
T Consensus 728 ~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~ 807 (970)
T KOG0946|consen 728 GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTR 807 (970)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhH
Confidence 11223334444444444444444333333322222222222221 1122333333334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 211 RASLEERLKLLEADKDSWTQMESVSKETIAGLS-------VDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-------~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
..+++.++..++++++.+...+...-+.+..++ .+......+...+..+-+........+...+.+|.
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 555555666666666665555555544444444 33344444555566666655555565655555555
No 68
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.70 E-value=0.044 Score=52.85 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---EATLEETIKQLRNQNDLHI 166 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---e~~le~eLeeLe~ei~~L~ 166 (473)
.-|..+..++....+.....+..+.++..+...+..-+..+..++..|+..+...... +..+..++..+..++..+.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777776654 4466778888899999999
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982 167 QREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245 (473)
Q Consensus 167 ~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e 245 (473)
-+...++.++..+..|||.|..+.. .+..-.. ...-.-.-|+..+..+...++....++.+.-....=--..
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ-------k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~ 179 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ-------KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAA 179 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999998885 3222222 2223333344444444444444444433332222211133
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 246 ITQLRMQVVELEESRNN 262 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~ 262 (473)
+..+...+..+-+....
T Consensus 180 ~~~v~~~l~~~l~~KN~ 196 (201)
T PF13851_consen 180 LSQVSKKLEDVLDSKNQ 196 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445444444443
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.68 E-value=0.027 Score=55.53 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 157 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee 157 (473)
.+..++..+.-+.......++.+..+++........++..+..|+.++...+..+..+..+++.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444333333333333333
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.67 E-value=0.27 Score=59.24 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 011982 159 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKI---SQLRDESAALNMKRASLEERLKLLEADKDSWTQME-- 232 (473)
Q Consensus 159 e~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I---~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei-- 232 (473)
..+...+...++..+.+++.+...+..|...-| .+...+ ...+.++..+...+..|......++...+.+...+
T Consensus 312 ~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~ 391 (1201)
T PF12128_consen 312 NKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE 391 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333 222222 23333344444444444444444444433333332
Q ss_pred ------HhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Q 011982 233 ------SVSKETIAGLSVDITQLRMQVVELEESRNNLLQ-----ENRQLKENVSSLRSQLSSDESKKLQHATS------- 294 (473)
Q Consensus 233 ------~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr-----Ee~kL~~~i~~L~~eL~~ae~~l~~ae~~------- 294 (473)
.....++..+..+....+.+...-.+....-|+ ....+......+..++..++..+..+..+
T Consensus 392 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~ 471 (1201)
T PF12128_consen 392 AFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQL 471 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHH
Confidence 233333444444433333333333333333333 23344444444444444444444333110
Q ss_pred -----chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982 295 -----EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331 (473)
Q Consensus 295 -----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~ 331 (473)
.++..+.+...+...+..+..+...+..+.+....++
T Consensus 472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 513 (1201)
T PF12128_consen 472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL 513 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555444444433
No 71
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.13 Score=55.61 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=75.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982 181 SEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 259 (473)
Q Consensus 181 ~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de 259 (473)
+.+..+....| .++++++.++.++...+.+.+++...-..+-..-...+.+.-.+++.|......-..|...|.+|.++
T Consensus 99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555 88888888888888888888888777777777666677766677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 011982 260 RNNLLQENRQLKEN---VSSLRSQLSSDESKK 288 (473)
Q Consensus 260 RK~LwrEe~kL~~~---i~~L~~eL~~ae~~l 288 (473)
--+|......|+.. ...|+.++.+++..+
T Consensus 179 NIsLQKqVs~LR~sQVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 179 NISLQKQVSNLRQSQVEYEGLKHEIKRLEEET 210 (772)
T ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 77777766666653 445555555555544
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.63 E-value=0.17 Score=56.00 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---hchhchHHHHHHhhhhHHHHHHHH
Q 011982 270 LKENVSSLRSQLSSDESKKLQHAT---SEQKDFSTQIEAAGALIDKLITEN 317 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l~~ae~---~~~~dMe~ql~~~~~~~~~l~~Ey 317 (473)
|-..+..|+..|+..++...+-+. .+|.+|...++++--+.+.++++.
T Consensus 585 lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 585 LVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444444433221 277888888888777777666653
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.62 E-value=0.14 Score=58.13 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET---IKQ 157 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e---Lee 157 (473)
+.+.-.......-++++.+........+++..+..+.-+++.........-.+...|+.+...........+.- +++
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee 414 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEE 414 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666677777777777777777777777777777776666665555555556655555544432222221 344
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 011982 158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE 237 (473)
Q Consensus 158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e 237 (473)
.+.+......+...+...+..|..+--.+|++.-.+..++...+..+.....+...|...++++..+...++...++..+
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~ 494 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAK 494 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44554455555555555555555555555555555555555555555555555555555555555555555554444444
Q ss_pred HHhchHHHHHHHHHHHHHHH
Q 011982 238 TIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~~eL~ 257 (473)
.+..++.++.-+..++..|+
T Consensus 495 ~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.14 Score=54.28 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 250 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 250 k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+.-..+|......-.....+|....++|...+..++....
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555555554443
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.069 Score=61.65 Aligned_cols=255 Identities=15% Similarity=0.195 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 73 LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 73 ~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
-+|.+=+.+.++-..|..+|..+.. ++. ....++.++.-|...+.........+...+..++.++...+.....+.
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFG 724 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3566666666666777777777777 333 666677777777777777777776666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 153 ETIKQLRNQNDLHIQREGGLEMNIANL---------------------QSEKEFWLQKEAALEQKISQLRDESAALNMKR 211 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~kl~~le~rl~~L---------------------K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei 211 (473)
++|.++...++........|+.++... ...-..+-.+...++..+..+...++-.++
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~-- 802 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ-- 802 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--
Confidence 666666555555555555555554443 011112222222555555555555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHH-------HHHhch---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 212 ASLEERLKLLEADKDSWTQMESVSK-------ETIAGL---S----VDITQLRMQVVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~~ei~~~~-------e~L~~l---~----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
.++...++.++..++.+..++.++. ..+... + .....+...+.+..+.-..+..+..+|.+.+..+
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~ 882 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI 882 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3334444444444444444433333 222222 1 1112222333333333334444444455555555
Q ss_pred HHHHHHHHHHHHhhhhh-chh---------chHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982 278 RSQLSSDESKKLQHATS-EQK---------DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 278 ~~eL~~ae~~l~~ae~~-~~~---------dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~ 334 (473)
.+.+.+........-.. +++ .|+.-..-+...-.-|-.+|. |..++++....++..
T Consensus 883 es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 883 ESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRI 948 (1141)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHHHh
Confidence 54444444333222000 222 222222222222234567888 888999998888776
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.59 E-value=0.073 Score=50.64 Aligned_cols=180 Identities=20% Similarity=0.174 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhchHHHHHHHHH
Q 011982 105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQS 181 (473)
Q Consensus 105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL---eeLe~ei~~L~~kl~~le~rl~~LK~ 181 (473)
.+..|+..-+.|.++.....+.+...+.-...|..+|.........+..-+ +.+..++..++.-...+++....|-+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333322222111 22233444444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982 182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 261 (473)
Q Consensus 182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK 261 (473)
.....-+....|.+.|..++.+...+..+.+.+...+..|..+...|..++..++.-+....+-+.+.-.++++|.
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~---- 164 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELK---- 164 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----
Confidence 3222222222666667777777777777777777777777666666666665555555444444443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.-....+.....|+.++.+++..+.++
T Consensus 165 ---~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 165 ---KTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223344455556666666666666543
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.57 E-value=0.018 Score=52.58 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
.....+.+....+..++..++.....+..+|.++..+...++.+++.+...+......+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444445555555444444444
No 78
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.52 E-value=0.091 Score=49.97 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 011982 131 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 184 (473)
Q Consensus 131 E~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD 184 (473)
+.++..|+......+..-..+..+-..++++...|..++..++..-..+..++|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 333344444433333333344444444444444444444433333333333333
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.49 E-value=0.16 Score=56.24 Aligned_cols=18 Identities=17% Similarity=-0.036 Sum_probs=9.6
Q ss_pred hhhhhhhhcccCCccccc
Q 011982 340 LSSAIGSDAVTALTSDTE 357 (473)
Q Consensus 340 l~s~~~~~~~~~l~~v~g 357 (473)
|+.+.+...+++|+|+=.
T Consensus 427 L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 427 LHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHHHHHcCCCCCcH
Confidence 334445555666766533
No 80
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.48 E-value=0.022 Score=59.65 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.7
Q ss_pred ccccccccccccccC
Q 011982 371 NRLETQGVVAVKEDR 385 (473)
Q Consensus 371 ~~~~t~~e~~~~~ag 385 (473)
+.+..-+.||+...|
T Consensus 308 ~~~~v~~~v~~~~~~ 322 (423)
T TIGR01843 308 DPLEIEAKLSPKDIG 322 (423)
T ss_pred CcEEEEEEEChhhhh
Confidence 345555555554444
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.28 Score=54.63 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------chhchHHHHHHhhhhHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS----------------EQKDFSTQIEAAGALIDKLITENI 318 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~----------------~~~dMe~ql~~~~~~~~~l~~Ey~ 318 (473)
++..--+.-..++.+.......|+.++..+...|.++++- +.=-+=.+|...|..+-..+.+--
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG 574 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETG 574 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334445556666666666777777777777666530 111122344556666666666666
Q ss_pred HHHHhhhhhhhhhhhh
Q 011982 319 ELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 319 ~L~~k~neL~~~~~~~ 334 (473)
.++...-+|..|++..
T Consensus 575 ~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 575 TISREIRDLEEQIDTE 590 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777666543
No 82
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.47 E-value=0.26 Score=54.17 Aligned_cols=211 Identities=18% Similarity=0.168 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 011982 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET----IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 187 (473)
Q Consensus 112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wL 187 (473)
....|.++......++..++..+..++..|.....+...++.. ......++.-+..++...+.|+..+..+...+-
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555554444333 444555566666666666666665544443332
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982 188 QKEAALEQKISQLR--DESAALNMKRASLEERLKLLEADKDSWTQM----ESVSKETIAGLSVDITQLRMQVVELEESRN 261 (473)
Q Consensus 188 qkEi~Le~~I~~l~--~el~~L~~ei~~Leeeie~Le~EI~~L~~e----i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK 261 (473)
..-...+ .-..+. ..++.+...+.+.+..|..|..+|..++.. ++.|..+|+.+..++......++++..+.+
T Consensus 263 ~ql~~~N-~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 263 EQLAKAN-SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHhhh-hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 222222 445555555666666666666666555442 223334444444443333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------h-------hh----chhchHHHHHHhhhhHHHHHHHHHHHHHh
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDESKKLQH-------A-------TS----EQKDFSTQIEAAGALIDKLITENIELVEK 323 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a-------e-------~~----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k 323 (473)
+- +..+.++.+|.-+...- .. + .| +..-|+++...++.-+.-+..+-.++..+
T Consensus 342 ~~--------sDYeeIK~ELsiLk~ie-f~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~ 412 (629)
T KOG0963|consen 342 SR--------SDYEEIKKELSILKAIE-FGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKK 412 (629)
T ss_pred hh--------ccHHHHHHHHHHHHHhh-cCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhh
Confidence 21 23333333333322211 10 0 01 45556666666666666666666777777
Q ss_pred hhhhhhhhh
Q 011982 324 VNDLSVKLD 332 (473)
Q Consensus 324 ~neL~~~~~ 332 (473)
+.+|..+-.
T Consensus 413 ~~el~~~~~ 421 (629)
T KOG0963|consen 413 GEELEAKAT 421 (629)
T ss_pred hhhhHHHHH
Confidence 777776544
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.46 E-value=0.11 Score=49.73 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 177 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~ 177 (473)
.++++|.+++.........+..++..|+.-..-....+..++..=.++-.-+..+..+...++.++.
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444443333333333333333333333333333333333333
No 84
>PRK09039 hypothetical protein; Validated
Probab=97.46 E-value=0.033 Score=57.90 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~ 144 (473)
+.+|-+-+.........++..+..|+..+...
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555444433
No 85
>PRK09039 hypothetical protein; Validated
Probab=97.44 E-value=0.044 Score=57.03 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 261 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK 261 (473)
.++..+..+...+...+....+...++..|+.+|+.|+.++..++..|...+.+..+.+.++..|.....
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555544554444444444444444443333
No 86
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.44 E-value=0.21 Score=52.10 Aligned_cols=184 Identities=17% Similarity=0.134 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 168 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k 168 (473)
..++++.+.|+......+...-.+-+....+.....+........+..+.++-......+..+..+...+..+.+.++..
T Consensus 94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666677777777777776666777777777777777777777777
Q ss_pred hhchHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982 169 EGGLEMNIANLQSEKEFWLQKE--A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245 (473)
Q Consensus 169 l~~le~rl~~LK~ERD~wLqkE--i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e 245 (473)
...|+....++|.++-.+-... | .-...+....+.+.....++.+.+.....+...|+.+...+......++.-.+.
T Consensus 174 ~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~ 253 (499)
T COG4372 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7777766666655443332211 1 222233344444555555555555555555555555555555444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 246 ITQLRMQVVELEESRNNLLQENRQLKE 272 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~ 272 (473)
+..-..++..|+-+-.-|.+|..+|..
T Consensus 254 I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 254 IRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434443344333334444433333
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.34 Score=54.46 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=15.7
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
+|.-.+.|+..++.....++---.+|.+
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777776666655544444333
No 88
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.38 E-value=0.51 Score=55.47 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ 146 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~-q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq 146 (473)
|.+.+.++......+. +.++.+....+...........++..++..+..++.+++..++
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 2333333444444444444444444444444444444444433
No 89
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.38 E-value=0.055 Score=55.51 Aligned_cols=182 Identities=17% Similarity=0.182 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 011982 142 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ--------------KEAALEQKISQLRDESAAL 207 (473)
Q Consensus 142 ~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLq--------------kEi~Le~~I~~l~~el~~L 207 (473)
++....+-.+..+|+..+.+.+.++..-..++.|...++..+..|.. ....+..-+...+.....|
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L 84 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKL 84 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666666677777666666662 2236667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS-----VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-----~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
..++..|...+.+++.++.-|+..+....-...++. .+..++-.+++.+..+...|.++...+-.+.+.+..+.+
T Consensus 85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887776553333333 223333333333333333333333333333333333333
Q ss_pred HHHHHHHhhhhhchhchHHHHHHh-------hhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982 283 SDESKKLQHATSEQKDFSTQIEAA-------GALIDKLITENIELVEKVNDLSVKL 331 (473)
Q Consensus 283 ~ae~~l~~ae~~~~~dMe~ql~~~-------~~~~~~l~~Ey~~L~~k~neL~~~~ 331 (473)
....++.+. .++|-++ -.+|+.++-||-=|-+|++.+...+
T Consensus 165 ~yk~K~~RL--------N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 165 AYKCKAHRL--------NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHH--------HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322 1111111 0135567777777777777666543
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.18 Score=56.88 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 163 (473)
Q Consensus 98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~ 163 (473)
....+..-...+..-+..+..+++...+....+..+.+.|+.++.........+..++.-|+.++.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555666666666666666666666666666665555555555555555555544
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.33 E-value=0.45 Score=53.69 Aligned_cols=265 Identities=13% Similarity=0.126 Sum_probs=136.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 70 SANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA 149 (473)
Q Consensus 70 ~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~ 149 (473)
.|.-.|..|.-..|.+-.+.....-+++++..+...+..|...+..+..+...+...++.++..+++-+.+|+....+..
T Consensus 72 eSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh 151 (1265)
T KOG0976|consen 72 ESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLH 151 (1265)
T ss_pred chhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444555666677777788888888888888888888888888888888888888888888887777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA----LEQKISQLRDE------SAALNMKRASLEERLK 219 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~----Le~~I~~l~~e------l~~L~~ei~~Leeeie 219 (473)
.+...|..-...+......+...-+.+..|..++...+..-.. +...+..++.. +..+..+...+..++.
T Consensus 152 ~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl 231 (1265)
T KOG0976|consen 152 KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVL 231 (1265)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 6666655444444444333333333333333333322221111 11111111111 1111111122222222
Q ss_pred HHHHHHHHHHHHhH-------hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011982 220 LLEADKDSWTQMES-------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA 292 (473)
Q Consensus 220 ~Le~EI~~L~~ei~-------~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae 292 (473)
.-.-++.+..+.+. -.++....++.-...+.+...++.-.+.-|-+|...-...+-.++.+|+.......++.
T Consensus 232 ~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21222222111111 22233333333333444455555555555666666555566666666666666665553
Q ss_pred h-----h---chhchH--HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982 293 T-----S---EQKDFS--TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 293 ~-----~---~~~dMe--~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~ 334 (473)
+ + .++.|. .|+..++..+-.+-.--.-|-+|.|+|+.+-++.
T Consensus 312 gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~a 363 (1265)
T KOG0976|consen 312 GDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMA 363 (1265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 2 1 334443 3333443333334444455666888888765543
No 92
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.27 E-value=0.32 Score=50.73 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 157 (473)
Q Consensus 78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee 157 (473)
+.-.+|.+.+ ...++.+..+..........++..-.....++....+.....+.++..++.......+.+..+..+...
T Consensus 70 r~gVfqlddi-~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~ 148 (499)
T COG4372 70 RSGVFQLDDI-RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD 148 (499)
T ss_pred HhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555443 334566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhchH
Q 011982 158 LRNQNDLHIQREGGLE 173 (473)
Q Consensus 158 Le~ei~~L~~kl~~le 173 (473)
++..+..+-.+...+.
T Consensus 149 lqtrl~~l~~qr~ql~ 164 (499)
T COG4372 149 LQTRLKTLAEQRRQLE 164 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555544333
No 93
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.28 Score=49.09 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 157 (473)
Q Consensus 92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee 157 (473)
+...+.++..+.+....++.++..|..++.....+...+..++..++.+|...++++..+..+|.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888888888888888888888888887777777777777766666654
No 94
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.21 E-value=7.8e-05 Score=85.88 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQ 157 (473)
Q Consensus 78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLee 157 (473)
|..|...-+.+...+.++...+..+.+....++..+.+|...++.........+..++.+...+..+..+.......+..
T Consensus 126 rkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e 205 (859)
T PF01576_consen 126 RKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE 205 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777777788888888877777777777777777777777776665555555555
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
+......+..++..+...+..+......+-+....+...+..++..++.-......|...+..++.+++.|..++.
T Consensus 206 l~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle 281 (859)
T PF01576_consen 206 LTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLE 281 (859)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444333333333333444444444444444444444444444444444444433333
No 95
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.18 E-value=0.69 Score=52.79 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI---QQLQRQNDLRMQKEATLEETIKQLRNQND 163 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eL---keLq~eI~~~eqke~~le~eLeeLe~ei~ 163 (473)
.++.....++-+...-.......-.+..+|..+..........+++.. .+....+..++.+.+.+...+.++...-.
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~ 441 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHA 441 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333334467777766666666666665 67777777777777777777777777777
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982 164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 243 (473)
Q Consensus 164 ~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~ 243 (473)
.+..|.+.....+.-- .+...++++....+...+..+..+...++...+....-+++++.++..+..++..++
T Consensus 442 ~lL~K~~di~kQle~~-------~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 442 DLLRKYDDIQKQLESA-------EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666433322221 122223344444444444444444444444444444444444444444444444433
No 96
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.15 E-value=0.085 Score=48.03 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 188 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 267 (473)
Q Consensus 188 qkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe 267 (473)
.+...+...+...+...+++...+..++.++...+.....+...-.+....+..+..++..+-..+..|.-+...+..|.
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666667777777777777776666666666665555556666666555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 268 RQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 268 ~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
..|....+..+..++.++....
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 5555555555555555444443
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.14 E-value=0.65 Score=51.68 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
|.+-...++.-| .+++.+.+.+.....++..+..|+.....++...+.+..
T Consensus 514 Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 514 KEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777777777777 788888888888887777777777777777777777665
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.14 E-value=0.13 Score=46.86 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 259 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de 259 (473)
+.|..+..++..+...+..++.++..+.++...|...+....+.++.|.....++..-+..+.++
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444333
No 99
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.13 E-value=0.00011 Score=84.79 Aligned_cols=248 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 86 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 165 (473)
Q Consensus 86 ~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L 165 (473)
..+..++..+...+..+.+....++..++.+..++..+..+....+..+..+.............+...+......+..+
T Consensus 155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555555544444444444444444444444444444
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982 166 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL-------NMKRASLEERLKLLEADKDSWTQMESVSKET 238 (473)
Q Consensus 166 ~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L-------~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~ 238 (473)
......+...+..++...+...+....+...+..+..++..+ ......++..+..+..++..|+...+.-...
T Consensus 235 ~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 235 QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 433333444444444444444444434444444444444444 4444455555556666666665554432211
Q ss_pred -HhchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------
Q 011982 239 -IAGLS-------VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT----------------- 293 (473)
Q Consensus 239 -L~~l~-------~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~----------------- 293 (473)
+..+. ..+.++..++..+......|-+-..+|...+..+..+|.++.......+-
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~ 394 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22233 33344444555555555555555555555555555555554443322210
Q ss_pred -----------------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982 294 -----------------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333 (473)
Q Consensus 294 -----------------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~ 333 (473)
+++-.|..++......++.+..++..|...+.+|..++++
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~ 451 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD 451 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 0444455555555555555555555555555555554443
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.12 E-value=0.73 Score=51.94 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 210 KRASLEERLKLLEADKDSWTQMESVS--KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L~~ei~~~--~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
.+..+..++..++.+|+.+..++... .+.+..+...+..+..++..+..+...+.++...+...+..++.++.+..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444321 24444444555555555555555555555555555555555555554433
No 101
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.11 E-value=0.28 Score=47.04 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982 260 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333 (473)
Q Consensus 260 RK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~ 333 (473)
|..|.++...+...++.....++.+++.+.-+ ......|+..-..-...+..+++.|..++..|.-+++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~----~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE----NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555555544222 11144555555556666666777777777777665543
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.11 E-value=0.22 Score=55.49 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-EQKDFSTQIEAAGALIDKLITENIELVEKVNDL 327 (473)
Q Consensus 249 Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~-~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL 327 (473)
...++..+..+.+.+..|...-...+..|..++.++-..+.+...+ -|-++=..|..=..+|.+-..+--.|-+..|-|
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433221 334444455555556666666666666666666
Q ss_pred hhhhh
Q 011982 328 SVKLD 332 (473)
Q Consensus 328 ~~~~~ 332 (473)
..+|+
T Consensus 525 ~gkL~ 529 (594)
T PF05667_consen 525 TGKLD 529 (594)
T ss_pred HHHHH
Confidence 66554
No 103
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.09 E-value=0.28 Score=46.75 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE-------TIKQLR 159 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~-------eLeeLe 159 (473)
.+...|..++.+...+..+.+.+..++.++........+....++.....+...+...+.++..... .+++.-
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa 87 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666555555555555555555555555444444332221 222222
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982 160 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET 238 (473)
Q Consensus 160 ~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~ 238 (473)
..+.-+...+..+ .+|-..-...+ .|..++..+.+.+.++...-..+....+..+.+|..+...+..-.-.
T Consensus 88 rkL~iiE~dLE~~--------eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 88 RKLVIIEGELERA--------EERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 2222222222211 22222333344 56666666666666666666666666666666666666654433322
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
-....-.+..|...++.|.+.......+-..+...++..-.
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~ 200 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQ 200 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 22333345555555555555555555544444444444333
No 104
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.08 E-value=0.93 Score=53.12 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L 179 (473)
++....+-++...+.....+.-|+....-|...++.+.++.++....+.......+.++++..+++.|
T Consensus 1564 ~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1564 QAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333444444444444444444444444444444444
No 105
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.08 E-value=0.32 Score=47.15 Aligned_cols=131 Identities=21% Similarity=0.266 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 011982 148 EATLEETIKQLRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQKEAALEQKISQLRDESAALNMKRASL----EE 216 (473)
Q Consensus 148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-------K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~L----ee 216 (473)
.......+..+..+.+.+.+.+.+++..+.+| |.-...|...+..|...+......+....+....| +.
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee 143 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE 143 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555544444444 55555555555555555555555444444444433 44
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 217 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 217 eie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL 281 (473)
.+..-..+|+.++. .+...+..++..+...+.++..|.......-+|..+|...-+.|-..+
T Consensus 144 kL~~ANeei~~v~~---~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 144 KLEKANEEIAQVRS---KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555556665555 566777778888888888888888888888888888877777765543
No 106
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.08 E-value=0.12 Score=51.42 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 202 (473)
Q Consensus 123 ~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~ 202 (473)
..+++..++.++..|+++-...+=+++.++..|...+.+.+.-+.+...++.....|-...+.+-+....+.-++.....
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 44666677777777776666666666666776766666666666666666555555666666666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH------------------HHHHHHHHHHHHHHHHHH
Q 011982 203 ESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI------------------TQLRMQVVELEESRNNLL 264 (473)
Q Consensus 203 el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~------------------~~Lk~q~~eL~deRK~Lw 264 (473)
.+..+...+......|+.|+.+|.-++.+++............+ ...-..+++|+++++.-.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev 175 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence 77777777777777777777777777776664443333222111 112356666776666666
Q ss_pred HHHHHHHHHHHHHH
Q 011982 265 QENRQLKENVSSLR 278 (473)
Q Consensus 265 rEe~kL~~~i~~L~ 278 (473)
.|+.+|..++-.|.
T Consensus 176 eerkrle~e~k~lq 189 (307)
T PF10481_consen 176 EERKRLEAEVKALQ 189 (307)
T ss_pred HHHhhHHHHHHHHh
Confidence 66666665555554
No 107
>PRK11281 hypothetical protein; Provisional
Probab=97.04 E-value=1.2 Score=53.10 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+..|-..+..+.++.+.+.++.......++++.....+.+.+++..
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l 332 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL 332 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677778888888888888888888888888877777555
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.02 E-value=0.3 Score=50.45 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 011982 274 VSSLRSQLSSDESK 287 (473)
Q Consensus 274 i~~L~~eL~~ae~~ 287 (473)
+..|+..+..++..
T Consensus 278 v~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 278 VKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 109
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.77 Score=49.98 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 272 (473)
Q Consensus 193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~ 272 (473)
.-..|-.+.+++..+..++...+++.+.+......+...-...+...-.|..++.+.+---.-|-.++.+|-.|...|..
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33445555555555555555555555555555555544444444455555555555555555555556666666666666
Q ss_pred HHHHHHH
Q 011982 273 NVSSLRS 279 (473)
Q Consensus 273 ~i~~L~~ 279 (473)
.++.|+.
T Consensus 185 qVs~LR~ 191 (772)
T KOG0999|consen 185 QVSNLRQ 191 (772)
T ss_pred HHHHHhh
Confidence 6665554
No 110
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.98 E-value=0.16 Score=45.52 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982 179 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 258 (473)
Q Consensus 179 LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d 258 (473)
....|..-+......-..|..++.++..+...+..+..........+..... .|..+-..+..++..++..+.+|..
T Consensus 43 Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 43 AQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555445556666666666666666666666655555554433 3444444444555555555555554
Q ss_pred HHHHHHHH
Q 011982 259 SRNNLLQE 266 (473)
Q Consensus 259 eRK~LwrE 266 (473)
+-+-|...
T Consensus 120 QN~lLh~Q 127 (132)
T PF07926_consen 120 QNKLLHDQ 127 (132)
T ss_pred HHHHHHHH
Confidence 44444433
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.98 E-value=0.39 Score=54.35 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 80 HLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 139 (473)
Q Consensus 80 ~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~ 139 (473)
.++.=..+|+.++.|++.|+..+...+......+..-+..+.....++..|...+..|..
T Consensus 262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677889999999999999999999888888888888888888888888888888776
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.94 E-value=0.58 Score=47.82 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 154 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 154 eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
.++.|+.++..|..+...++....+|+.+-+.+-.++. ++-+.+......+..|..++..-.++....+.+|..|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555433333322222 44556666667777777777777777777777777777
Q ss_pred HHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 230 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 230 ~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.++.++...+..+..+...|...+....+....|.-|...|.........-+..+...+
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666666666665555555554444444444333
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.93 E-value=0.98 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 267 NRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 267 e~kL~~~i~~L~~eL~~ae~~l 288 (473)
...+...+..++.++..+..++
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444
No 114
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.85 E-value=1.2 Score=49.81 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 93 KHLRNERESHIQKEATL----EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 168 (473)
Q Consensus 93 ~qlE~E~~~l~q~~a~L----E~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k 168 (473)
+.++.+.....+.+..+ +..+.++..-...+...++.+...+..|+.-+..-.++...++..|.-+..+++.....
T Consensus 313 ~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~e 392 (786)
T PF05483_consen 313 KALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSE 392 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence 34444444443333333 45566666666666667777777777777777776776666666666555555444444
Q ss_pred hhchH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982 169 EGGLE-------MNIANLQ---SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET 238 (473)
Q Consensus 169 l~~le-------~rl~~LK---~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~ 238 (473)
+.++. ..+..|+ .+...++...-.++.-...++..-..|..-+...+.++..|+..+.........+..+
T Consensus 393 leEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQ 472 (786)
T PF05483_consen 393 LEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQ 472 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 43211 1111111 1111122222222222222222233333334444555555555555555555555566
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHH
Q 011982 239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENI 318 (473)
Q Consensus 239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~ 318 (473)
+..+..++..-+-+..+|......|..|...+....+....++..+..++... ..|-....-.|+.|...++
T Consensus 473 VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~--------k~qee~~~kqie~Lee~~~ 544 (786)
T PF05483_consen 473 VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS--------KKQEEKMLKQIENLEETNT 544 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 66666666665666667777777777777777777777777777766666444 1122222334444555555
Q ss_pred HHHHhhhhhh
Q 011982 319 ELVEKVNDLS 328 (473)
Q Consensus 319 ~L~~k~neL~ 328 (473)
.|++.++-+.
T Consensus 545 ~Lrneles~~ 554 (786)
T PF05483_consen 545 QLRNELESVK 554 (786)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.78 E-value=1.4 Score=49.98 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 83 QREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 162 (473)
Q Consensus 83 q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei 162 (473)
.+|+.+...|..++.|.+.+...+.........|.............++.+...|+.+|.....++..+-..+.+|+.+.
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 37788888888888888888888888888888888888888888888888888888888888887776666666666665
Q ss_pred HHHHHHhhchH
Q 011982 163 DLHIQREGGLE 173 (473)
Q Consensus 163 ~~L~~kl~~le 173 (473)
-.|......++
T Consensus 107 islQKqvs~Lk 117 (717)
T PF09730_consen 107 ISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.74 E-value=0.23 Score=53.76 Aligned_cols=27 Identities=4% Similarity=0.012 Sum_probs=12.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982 302 QIEAAGALIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 302 ql~~~~~~~~~l~~Ey~~L~~k~neL~ 328 (473)
++..+.-..+....-|..++.|+.+..
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.74 E-value=0.22 Score=56.89 Aligned_cols=32 Identities=3% Similarity=-0.079 Sum_probs=21.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982 300 STQIEAAGALIDKLITENIELVEKVNDLSVKL 331 (473)
Q Consensus 300 e~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~ 331 (473)
+.++..+.-..+...+=|..|+.|+.+..++.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666677777788888887777654
No 118
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.71 E-value=1.4 Score=48.76 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=27.5
Q ss_pred cchhhhccccccCCCCcccccCCc---------cccCcchhHHHHHHhhccc
Q 011982 421 VQDLELQVVESYTDKVAAVPLTDA---------PLIGAPFRLVSFVAKYVSG 463 (473)
Q Consensus 421 ~~~~~~~~p~~~~~~~~~vPl~~~---------~~~~~~f~~~~~~~~~~~~ 463 (473)
..+++++||..|++.-+ ||+.. -..|+.+++.+-.+||++|
T Consensus 542 ~~d~e~~y~~~yee~l~--p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~ 591 (629)
T KOG0963|consen 542 SSDVESQYSAAYEESIS--PFASFRKKERERKYKRLGSFERITLSLGRTLLF 591 (629)
T ss_pred CcchhhhhhhHHHhhcC--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44677788887665443 55443 5667778888878888776
No 119
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.70 E-value=1.2 Score=47.81 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEAT---LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 166 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~---LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~ 166 (473)
.++..+....+.+.+.+.. +-..++.|.+.-.....-...++.-...++...+.|-..+..+..+++..+.++..|.
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433332 3345555555555555555555556666666666676677777777777777777777
Q ss_pred HHhhchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 011982 167 QREGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETI 239 (473)
Q Consensus 167 ~kl~~le~rl~~L---K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L 239 (473)
++.+.+...+..- -++....-+..+.|...+..+..+.+.|...+.+.+-++...=.++...-.+.+++..+|
T Consensus 351 ~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 351 SNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777665544433 233333333333555556666666666665555555444444444444444444444333
No 120
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.70 E-value=1.4 Score=48.83 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------chhchHHHHHHhhhhHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS----------------EQKDFSTQIEAAGALIDKLITENIELV 321 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~----------------~~~dMe~ql~~~~~~~~~l~~Ey~~L~ 321 (473)
+.|+..+.....+...+..+......+...+.+...+ ++..+..+...+...+.....=|+.+.
T Consensus 299 ~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~ 378 (560)
T PF06160_consen 299 EAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ 378 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 4444444444444444444444444444444333110 344444444444444444444555555
Q ss_pred HhhhhhhhhhhhhhH--------------------------HhhhhhhhhhhcccCCcccc
Q 011982 322 EKVNDLSVKLDRQSV--------------------------AAGLSSAIGSDAVTALTSDT 356 (473)
Q Consensus 322 ~k~neL~~~~~~~~~--------------------------~~Gl~s~~~~~~~~~l~~v~ 356 (473)
.++.++..++..... ..-|..+.+...+++|||+=
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 555554444433221 22344555556678888873
No 121
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.69 E-value=2.6 Score=51.67 Aligned_cols=228 Identities=15% Similarity=0.133 Sum_probs=103.3
Q ss_pred cccCCCCCCC---------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 011982 58 VDADRHQSNG---------AESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE--- 125 (473)
Q Consensus 58 ~~~~~~~~~~---------~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~q--- 125 (473)
|+.||+-..| +-.-|-.++=...-..+.+.++.+|..++.++..+...++.++..+..|..+...+=.
T Consensus 708 v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~d 787 (1353)
T TIGR02680 708 IDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRS 787 (1353)
T ss_pred ECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 5666655555 2333445554444455667777777777777777777777777777777766544322
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHH
Q 011982 126 ------KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR---------EGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 126 ------k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k---------l~~le~rl~~LK~ERD~wLqkE 190 (473)
.+......+.....++.....+.......+...+.++...-.+ +..+...+..|...-..|....
T Consensus 788 L~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~ 867 (1353)
T TIGR02680 788 LRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAV 867 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333333444444444444444444433333 1112333333333333332211
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 191 A---ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 267 (473)
Q Consensus 191 i---~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe 267 (473)
. .....+......+..+...+...+.++..+..++..+..++..+.+.+..+ +.++..++.++...+..+..+.
T Consensus 868 ~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el 944 (1353)
T TIGR02680 868 RELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGREL 944 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223333334444444444444444444444444444444444333332221 3333334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 268 RQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 268 ~kL~~~i~~L~~eL~~ae~~l 288 (473)
..+.+....+...+..+...+
T Consensus 945 ~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 945 PRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.64 E-value=0.036 Score=52.91 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 160 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ 160 (473)
+.+.-..+..++..+-..+..+.+++..+...+..+...+......+..+...+..|+.+|......+......++.+..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982 161 QNDLHIQREGGLEMNIANLQSEKEFWLQKEA 191 (473)
Q Consensus 161 ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi 191 (473)
++..+...++.++.++..++.|+..++..-.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887773
No 123
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.60 E-value=1.1 Score=46.20 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 209 (473)
Q Consensus 130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ 209 (473)
...+++.|+.++....+++.++...+.-|+..+............ ..|-.+|..|+..-..+...+..+..++.++..
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~--~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGA--RHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333333222211 112377777777776777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 210 KRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
++.++..+.+.......-|..+++
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666666666666655443
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.58 E-value=0.02 Score=54.71 Aligned_cols=87 Identities=25% Similarity=0.367 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~ 273 (473)
...+..++.++..+......+...+..+..++..++..+......|..+..++..|+..+..+.+..+.+.+-..-|..+
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE 152 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE 152 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344444444444444444444444444444443333333333333333333333333333333333333333333
Q ss_pred HHHHHHH
Q 011982 274 VSSLRSQ 280 (473)
Q Consensus 274 i~~L~~e 280 (473)
+..|+.+
T Consensus 153 ~~~L~l~ 159 (194)
T PF08614_consen 153 LQALQLQ 159 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.52 E-value=1.2 Score=45.89 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 223 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 274 (473)
Q Consensus 223 ~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i 274 (473)
.++..+..++...+..+..++.++..+...+.++..++..+..+..++.+..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444444444444444443333
No 126
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.43 E-value=1.4 Score=46.11 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=3.8
Q ss_pred CCceeee
Q 011982 408 SGEIVQI 414 (473)
Q Consensus 408 ~gritf~ 414 (473)
.|+|++|
T Consensus 346 ~g~V~~i 352 (423)
T TIGR01843 346 NGKVKSI 352 (423)
T ss_pred cEEEEEE
Confidence 4555555
No 127
>PRK10698 phage shock protein PspA; Provisional
Probab=96.40 E-value=1.1 Score=43.90 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-------------------- 147 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-------------------- 147 (473)
+..-+..+++=.+.+.+-+..++..+.++...+.........++.++..++..+..|+.+
T Consensus 15 in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K 94 (222)
T PRK10698 15 INALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK 94 (222)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444555555566666666666666666667777777777777777777777777664
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHH
Q 011982 148 ------EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK--ISQLRD--ESAALNMKRASLEER 217 (473)
Q Consensus 148 ------e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~--I~~l~~--el~~L~~ei~~Leee 217 (473)
...+...+......+..|...+..|+.++..++..++.+.-+....... +...-. ...+.-..++.++..
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~k 174 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERR 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 2244444555555555555566666666666666666665555433222 221111 112233445555555
Q ss_pred HHHHHHHHHHH
Q 011982 218 LKLLEADKDSW 228 (473)
Q Consensus 218 ie~Le~EI~~L 228 (473)
|..++.+.+..
T Consensus 175 i~~~Ea~aea~ 185 (222)
T PRK10698 175 IDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHhHh
Confidence 55555555443
No 128
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=2.5 Score=47.82 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH--------------HHHhchHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK--------------ETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~--------------e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
.+...+..+......+...+..++++...+......+.+++.-+. ..+..++........++++++
T Consensus 507 ~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 507 KLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433333333333332 333333333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.....+..+...+.-....|+.++..+...+.++
T Consensus 587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 587 EQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555544
No 129
>PF13514 AAA_27: AAA domain
Probab=96.35 E-value=3.6 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=9.5
Q ss_pred hchHHHHHHhhhhHHHHHHHHH
Q 011982 297 KDFSTQIEAAGALIDKLITENI 318 (473)
Q Consensus 297 ~dMe~ql~~~~~~~~~l~~Ey~ 318 (473)
..+..+++.+...+..+..+|.
T Consensus 936 a~l~~e~e~~~a~l~~~~~~~~ 957 (1111)
T PF13514_consen 936 AELEQEREEAEAELEELAEEWA 957 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 130
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.32 E-value=0.00097 Score=75.57 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=0.0
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 335 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~ 335 (473)
.+..|..++..+......+..+|....+++-+|..++.+..
T Consensus 482 ~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 482 KLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQ 522 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777766665443
No 131
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.30 E-value=1.4 Score=47.77 Aligned_cols=8 Identities=13% Similarity=0.576 Sum_probs=4.0
Q ss_pred cccccCCc
Q 011982 437 AAVPLTDA 444 (473)
Q Consensus 437 ~~vPl~~~ 444 (473)
..+|.+..
T Consensus 458 g~iP~~~~ 465 (498)
T TIGR03007 458 GVIPMIAT 465 (498)
T ss_pred EecCCCCC
Confidence 34555544
No 132
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.30 E-value=2.6 Score=47.17 Aligned_cols=253 Identities=14% Similarity=0.153 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 163 (473)
Q Consensus 84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~ 163 (473)
.+.....++...+.+...+.-....-+.++++|...+.........|+..-+....-+.........+..+|..+.....
T Consensus 227 leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq 306 (786)
T PF05483_consen 227 LEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQ 306 (786)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666666666666666666665555555555444444444444443333333
Q ss_pred HHH-------HHhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 164 LHI-------QREGGLEMNIANLQSEKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 164 ~L~-------~kl~~le~rl~~LK~ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
... ..+...-..+-++-.+.+.-+.... .....+..++..+..|..-+..-..+...++.++..+..++
T Consensus 307 ~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eL 386 (786)
T PF05483_consen 307 ESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMEL 386 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 2222222222222222222111111 11112222222222222222222222333333333333333
Q ss_pred HhHHHHHhchH-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hch
Q 011982 233 SVSKETIAGLS-------VDITQLRM---QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQ 296 (473)
Q Consensus 233 ~~~~e~L~~l~-------~e~~~Lk~---q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~------~~~ 296 (473)
......|..+. -++..|+. .-..|-++.+.+|+=...|....+.|..-|+..+..+...+. ..-
T Consensus 387 qkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~e 466 (786)
T PF05483_consen 387 QKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESE 466 (786)
T ss_pred HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 32222222222 11222222 112334555555655555555555555555555544443321 012
Q ss_pred hchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 011982 297 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 336 (473)
Q Consensus 297 ~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~ 336 (473)
..+-.|+..+...++.=.--|.+|...+|.|....+....
T Consensus 467 q~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQ 506 (786)
T PF05483_consen 467 QHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQ 506 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444444577777778887776655443
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.27 E-value=0.079 Score=54.50 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 241 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 241 ~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.+..++..++.+...+.++-...|++...+......+..+.+.+...+..+
T Consensus 75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444555555555555555555555544444444
No 134
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.25 E-value=1.4 Score=43.67 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE---ESRNNLLQENRQLKEN 273 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~---deRK~LwrEe~kL~~~ 273 (473)
+..++..+..+....+++..-|.+|+.--+.|+...-...-.+.+++..++.+-....-|. +++..|....+.|+.+
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555554433444455666666666655555554 3334444444444433
Q ss_pred HHHHHHH
Q 011982 274 VSSLRSQ 280 (473)
Q Consensus 274 i~~L~~e 280 (473)
...|+.+
T Consensus 173 ardlrqe 179 (333)
T KOG1853|consen 173 ARDLRQE 179 (333)
T ss_pred HHHHHHH
Confidence 3333333
No 135
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.21 E-value=1.3 Score=42.87 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 011982 85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK----------------- 147 (473)
Q Consensus 85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk----------------- 147 (473)
-+.+..-+..+++=...+.+.+..++..+.++...+.........++.++..+...+..|+.+
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al 90 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL 90 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555556666666777777777777777777777777777777777777777777777665
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982 148 ---------EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 191 (473)
Q Consensus 148 ---------e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi 191 (473)
...+...+..+...+..+...+..++.++..++.+++.+.-...
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22445555566666666666666667777777777776666554
No 136
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.19 E-value=0.061 Score=61.23 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQND 142 (473)
Q Consensus 85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~ 142 (473)
.+.+..++..+..+...+...+..++..+.++...+..+......+...+..|+....
T Consensus 352 ~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~ 409 (722)
T PF05557_consen 352 NASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKA 409 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444333333333333
No 137
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.19 E-value=1.3 Score=42.88 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.+...+.++......+-.....+..-|..+...-+.|...+..+...+...+..+..|+..-.+.- -.-...+.
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL------~~ANeei~ 153 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKL------EKANEEIA 153 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 344445555555555656666666666666666666666666666666665555555544433222 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 272 ENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
....+...++..+...|... +-+++.+-..++.-..||.+|..=.++|..+
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~--------e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKE--------EMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333 1123333334444556666666666666543
No 138
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.18 E-value=0.012 Score=66.89 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhh--chhchHHHHH--HhhhhHHHHHHHHHHHHHhh
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---------ATS--EQKDFSTQIE--AAGALIDKLITENIELVEKV 324 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a---------e~~--~~~dMe~ql~--~~~~~~~~l~~Ey~~L~~k~ 324 (473)
+....|..+...|.+....|+.++..++..|... .++ .+.+=+.... .-...++.|..||..|+.++
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466666666666666666666666666541 111 1222121111 13567778888888888877
Q ss_pred hhhhh
Q 011982 325 NDLSV 329 (473)
Q Consensus 325 neL~~ 329 (473)
-.|..
T Consensus 583 ~~le~ 587 (722)
T PF05557_consen 583 RSLEE 587 (722)
T ss_dssp HHHTT
T ss_pred Hhccc
Confidence 66653
No 139
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.11 E-value=2.4 Score=45.01 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhchH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI-KQLRNQNDLHIQREGGLE 173 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL-eeLe~ei~~L~~kl~~le 173 (473)
.+..+..+..+..+|+.++.+|.+...........+..+...|.......+....+.+-+- +.+..+...+..-+.
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~--- 289 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILI--- 289 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---
Confidence 3445555666677777777777776655555555555555555444333332221111110 011111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHH
Q 011982 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 253 (473)
Q Consensus 174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~ 253 (473)
|.+|..-+..+ .++..+..+..+...+...+..|...++.|..+..-..+.++.+..++ ...+.-+
T Consensus 290 ------k~eReasle~E-nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql-------~~eq~l~ 355 (502)
T KOG0982|consen 290 ------KKEREASLEKE-NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL-------ICEQKLR 355 (502)
T ss_pred ------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHH
Confidence 56666666555 334444444444444444444444444444444433333333333333 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 254 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 254 ~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
..+.+......++...-...+..|..++..+....-.+
T Consensus 356 ~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 356 VRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444455555555555666666666665554333
No 140
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=3.4 Score=46.75 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhchHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 160 NQNDLHIQREGGLEMNIANL---Q----SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 160 ~ei~~L~~kl~~le~rl~~L---K----~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
.+....++-...++.+..+| + ..+..+....+.+......++...+.+...+..+......+ ...+
T Consensus 454 ~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~-------~~~i 526 (698)
T KOG0978|consen 454 SEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL-------ELKI 526 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 33333334444455555555 1 22223333344555555555544444444444444444444 4444
Q ss_pred HhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 233 SVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 233 ~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
..+++++..+......+..+...+......+.+....+....+.|+..+......+.+.
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555556666666666666666667777777777776666666555
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.10 E-value=2.2 Score=45.89 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 263 LLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
...+...+...+..++..+..++..+.++
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444444445555555555444444
No 142
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.06 E-value=2.6 Score=45.10 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 133 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 212 (473)
Q Consensus 133 eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~ 212 (473)
.+..|+..+...+..+.+-+.+-+.|+-++..++.....|++|...--.+++..+..-+.+...+.....++..|+...-
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkg 470 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKG 470 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444555555555555555666655555555554444
Q ss_pred HHH
Q 011982 213 SLE 215 (473)
Q Consensus 213 ~Le 215 (473)
.++
T Consensus 471 elE 473 (527)
T PF15066_consen 471 ELE 473 (527)
T ss_pred HHH
Confidence 443
No 143
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.03 E-value=0.0017 Score=73.68 Aligned_cols=71 Identities=25% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQ---LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 158 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kike---L~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeL 158 (473)
++.+++.|+++...+.+....+|..++. +..++..+.+++..++..+......+..+.-....+..++..+
T Consensus 330 lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 330 LKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666655444 3444444444444444444444444333333333333333333
No 144
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.98 E-value=2.9 Score=45.26 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
.+.++|..++.++..+..+-.-+... -.-+..|-+.-. .+.+++......+.++.+++.....+.....+++..|
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~E----t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTE----TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555553322111 112334444444 4444444445555555555555555555555555555
Q ss_pred HHHhHhHHHHHhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 229 TQMESVSKETIAGLSVDITQL-------RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 229 ~~ei~~~~e~L~~l~~e~~~L-------k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
..++.++...+.-+.-+.+.+ +..-.++.++.+++.+...++-..++..+.+|+.+.
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555544444444 444455555555666666666666666666665554
No 145
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.98 E-value=3.9 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhh
Q 011982 309 LIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 309 ~~~~l~~Ey~~L~~k~neL~~ 329 (473)
.+..+.+.|..|..+++..+.
T Consensus 259 ~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 259 SIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.97 E-value=6.1 Score=48.48 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 103 IQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ 140 (473)
Q Consensus 103 ~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~e 140 (473)
..+++.++..+..|..++......+..+...+..|..+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 147
>PRK11281 hypothetical protein; Provisional
Probab=95.95 E-value=4.3 Score=48.64 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
++..+..+...+..++..++.+..++..++..-+.....+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls 166 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY 166 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 44444444444444444444444444443333333333333
No 148
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.93 E-value=2.4 Score=43.56 Aligned_cols=66 Identities=27% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 79 QHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144 (473)
Q Consensus 79 ~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~ 144 (473)
+.+..+-+.+..+.+.++.+...+.++...+......+..+.......+..|+.=..+|+......
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~l 90 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKL 90 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666676667777777777777766666666666555555544433
No 149
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.90 E-value=3.8 Score=45.52 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=36.9
Q ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 234 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 234 ~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
...+.+..+...+.....+...+.+....|+.++..-+..+..+...+....+.+...
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555666666666666667777777777777777777777776555
No 150
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.87 E-value=2.2 Score=48.85 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=6.9
Q ss_pred cCCceeeecCC
Q 011982 407 YSGEIVQIPLD 417 (473)
Q Consensus 407 ~~gritf~PLn 417 (473)
.+.||..|=+|
T Consensus 574 ~g~rvLlID~D 584 (754)
T TIGR01005 574 GGKRALLIDAD 584 (754)
T ss_pred CCCeEEEEeCC
Confidence 45567777665
No 151
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.87 E-value=5.8 Score=47.45 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+..+-..+....+....+.++.......++.+...+.+.+.+++-.
T Consensus 267 N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 267 NRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666777777788888888888888888888777777554
No 152
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.86 E-value=1.8 Score=41.47 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 97 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 158 (473)
Q Consensus 97 ~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeL 158 (473)
.++..+..++..++..+...+++...+.+++..++....+=...+............+++.+
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~ 65 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQ 65 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444555555555555555555555555555555444444444433333333333333333
No 153
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.79 E-value=2.1 Score=41.69 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---------------------- 147 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---------------------- 147 (473)
.-+..+++=...+.+-+..++..+.++...+.........++.++..++..+..|+.+
T Consensus 17 ~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~ 96 (219)
T TIGR02977 17 ALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQK 96 (219)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444445556666666666666666666666666666666666666666666654
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982 148 ----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 148 ----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE 190 (473)
...+..++..+...+..+..++..++.++..++..++.+.-..
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444444444455555555555555555555444444333
No 154
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.76 E-value=4.8 Score=45.62 Aligned_cols=138 Identities=20% Similarity=0.115 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh--------h--chhchHHHHHHhhhhHH
Q 011982 245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ---LSSDESKKLQHAT--------S--EQKDFSTQIEAAGALID 311 (473)
Q Consensus 245 e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e---L~~ae~~l~~ae~--------~--~~~dMe~ql~~~~~~~~ 311 (473)
-+.++-..+....+.|-.|..+...|...++.+... +-.|...++.... | .++=|..+|..-+
T Consensus 565 l~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Er---- 640 (1480)
T COG3096 565 LIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLERER---- 640 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH----
Confidence 344555555666677777777777777777766542 2233333333311 1 5555663333211
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc-cee
Q 011982 312 KLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG-ING 390 (473)
Q Consensus 312 ~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns-~vv 390 (473)
.+.-+-.+|-.+-+-|..+...++..-|-.-.+-..=--.+.||. |+|+.+.-.+.+-+|.+|.= |.+ |-.
T Consensus 641 e~t~~rD~l~~~r~~ld~qI~RLsqP~GseD~RL~~LAerfGGVL--LSEiYDDvtIeDAPYFSAlY------GPsRHaI 712 (1480)
T COG3096 641 EATVERDELGARKNALDEEIERLSQPGGSEDQRLNALAERFGGVL--LSEIYDDVTIEDAPYFSALY------GPSRHAI 712 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHhccee--HHHHhccCccccchhHHHhh------Cccccee
Confidence 122233344444444444444444333322111100001134552 45555544475677988876 566 544
Q ss_pred -ecCC
Q 011982 391 -VHAD 394 (473)
Q Consensus 391 -v~d~ 394 (473)
|.|=
T Consensus 713 VV~DL 717 (1480)
T COG3096 713 VVPDL 717 (1480)
T ss_pred eeccH
Confidence 4553
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.68 E-value=1.5 Score=39.29 Aligned_cols=6 Identities=17% Similarity=-0.069 Sum_probs=2.1
Q ss_pred HHHHHH
Q 011982 244 VDITQL 249 (473)
Q Consensus 244 ~e~~~L 249 (473)
.++.-|
T Consensus 119 ~QN~lL 124 (132)
T PF07926_consen 119 EQNKLL 124 (132)
T ss_pred HHHHHH
Confidence 333333
No 156
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.66 E-value=1.2 Score=44.59 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE 190 (473)
.+|.+|..+++.+......-.-.+..|+..+....++.+.-..++..|+.+...|..-...++.+...+ ..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKl--------shd 89 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKL--------SHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh--------hHH
Confidence 467777777777777777777777777777666666666666666677777666666666444433332 233
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH----------HHHh--------chHHHHHHHHH
Q 011982 191 A-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK----------ETIA--------GLSVDITQLRM 251 (473)
Q Consensus 191 i-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~----------e~L~--------~l~~e~~~Lk~ 251 (473)
+ .=+..+..+...+.+.+..+..|+.++..+..+++-.......-. ..+. -....+.+|+.
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~e 169 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQE 169 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHH
Confidence 3 444555666666666666666666666666666655433322111 1111 12377889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 252 QVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~ 273 (473)
+|+.-.++||.|--|..-|...
T Consensus 170 kynkeveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 170 KYNKEVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHHHHHhhHHHHHHHHhcc
Confidence 9999999999998888877743
No 157
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.64 E-value=2.1 Score=49.19 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=34.5
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
++.++.+.+.+..-.. +........+..++..++.++..+.-.++....+++.+..++......+..+..++..+
T Consensus 569 ~f~~~ss~e~E~~~~d----ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 569 NFDGDSSSEAEINSED----EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred hhhhcccccccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556555555443333 22233333444555555555555544444444444444444444444444444444333
No 158
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.54 E-value=3.2 Score=44.13 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 123 YKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 123 ~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
.......++.++..++.++...+.++..+.
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444444433
No 159
>PLN02939 transferase, transferring glycosyl groups
Probab=95.52 E-value=2.4 Score=49.77 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDL 143 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~ 143 (473)
-+|.|... .=|+..+..+-.+.+.+...=..+..+-.+.+.+..++..|+..+.+-...+.-
T Consensus 127 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (977)
T PLN02939 127 DFQLEDLV-GMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKL 188 (977)
T ss_pred cccHHHHH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhh
Confidence 34554443 445666666666666666666666666666666666666666666665444443
No 160
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.45 E-value=1.1 Score=38.90 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 158 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 158 Le~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
+.....++..++..++..+...|..++.|....-.|.+.+..++.+..+..+.+.+|+.+|..+...++.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555666666655554555555544444444444444444444444444433
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.43 E-value=7.5 Score=45.66 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011982 269 QLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 269 kL~~~i~~L~~eL~~ae~~l 288 (473)
+|+..+..+...+..+....
T Consensus 498 ~l~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 498 ELREEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33355555555555554444
No 162
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.34 E-value=1.5 Score=37.99 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982 182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 255 (473)
Q Consensus 182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e 255 (473)
+|..+..+...+...+..+...+...+.....|..+.+.|..-+..|..+-.+....+.+++..+.++...++.
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666666666666666666666666666666666555554
No 163
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.29 E-value=8 Score=45.19 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 92 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE 153 (473)
Q Consensus 92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~ 153 (473)
+..+..++......++.++.++......++....+...+..+...+...+..+++....++.
T Consensus 638 ~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~ 699 (1072)
T KOG0979|consen 638 IQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN 699 (1072)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444444433
No 164
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.19 E-value=3.8 Score=44.15 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 114 QQLQNECDLYKEKVATLEETIQQLQRQND 142 (473)
Q Consensus 114 keL~eei~~~~qk~~~LE~eLkeLq~eI~ 142 (473)
..+..++.....++..+..++..|+..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566555555555443
No 165
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.15 E-value=3.3 Score=39.95 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHH
Q 011982 235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 314 (473)
Q Consensus 235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~ 314 (473)
....+..+..++..++-+...|......+.+|+..|.+.....-.+++.--.--.-. |+.+++.+...++.-.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~l-------LEkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLL-------LEKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666666666666666655544444444 5555555555555555
Q ss_pred HHHHHHHH
Q 011982 315 TENIELVE 322 (473)
Q Consensus 315 ~Ey~~L~~ 322 (473)
.+-.+++.
T Consensus 164 aqL~evl~ 171 (201)
T PF13851_consen 164 AQLNEVLA 171 (201)
T ss_pred HHHHHHHH
Confidence 54444443
No 166
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.15 E-value=9 Score=44.99 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=4.8
Q ss_pred cchhHHHHHHhh
Q 011982 449 APFRLVSFVAKY 460 (473)
Q Consensus 449 ~~f~~~~~~~~~ 460 (473)
+-+=+||-|=-+
T Consensus 874 ~qiiIISH~eel 885 (908)
T COG0419 874 RQIIIISHVEEL 885 (908)
T ss_pred CeEEEEeChHHH
Confidence 333344444333
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.06 E-value=0.47 Score=48.88 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
..+..++..+..+...+.+++..++.+...+..++..++.+...+.+++.+.|+....+..++.....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433444444444444444444444444444444444444444444444444443333
No 168
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.01 E-value=1.2 Score=39.64 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
.+...|..+..++..++.++..+......+..+|-.+....
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555543
No 169
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.87 E-value=7.6 Score=44.51 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNE-RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ 138 (473)
Q Consensus 88 ~~~ei~qlE~E-~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq 138 (473)
|....+.+.++ +..+......++..+..|+.+.+.....+..+..+++.|+
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444 2444445555555555555555555555555544444443
No 170
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.84 E-value=5.6 Score=41.01 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 243 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 243 ~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
..++...+.++.++++++..+...........+.++.++..+++.+
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444
No 171
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=7.6 Score=42.52 Aligned_cols=120 Identities=11% Similarity=0.064 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 251 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~ 251 (473)
..+.+..|+.++..+-.+...++..+......+-.++....+|.+.+..+++++.++.--++.-.+.+..+..++..+..
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766666778888888888888899999999999999999999988888888888888888776665
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 252 QVVELE------ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 252 q~~eL~------deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
-..... |.++.|-++.............+++..-..+..+
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 7777777777777777777666666666655555
No 172
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=5.8 Score=45.42 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 78 RQHLLQREAILEET-VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156 (473)
Q Consensus 78 ~~~~~q~e~~~~~e-i~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe 156 (473)
.+.+.+.-..|.++ +..++.-+..+.++...+.....+-..++....+.+..+...-..|.++++....+.+.+..+++
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 45555555555566666666666666666666666666666666665555555555555555555
Q ss_pred HHHHH
Q 011982 157 QLRNQ 161 (473)
Q Consensus 157 eLe~e 161 (473)
.+-..
T Consensus 618 ~vl~~ 622 (717)
T PF10168_consen 618 RVLQL 622 (717)
T ss_pred HHHHH
Confidence 44433
No 173
>PLN02939 transferase, transferring glycosyl groups
Probab=94.79 E-value=11 Score=44.31 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hchhchHHHHHHhhhhHHHHHHHHHHHHHh
Q 011982 263 LLQENRQLKENVSSLRSQLSSDESKKLQHAT-----SEQKDFSTQIEAAGALIDKLITENIELVEK 323 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-----~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k 323 (473)
...+.+.|+..+++|+..|..+.-..-+++. .+++-++..+++-...|...++=|++..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (977)
T PLN02939 322 VLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKE 387 (977)
T ss_pred HhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554433322211 044445556666666666666666665553
No 174
>PF13514 AAA_27: AAA domain
Probab=94.73 E-value=13 Score=44.71 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 114 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 114 keL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
..+..++..........+..+..++..+..|...
T Consensus 676 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1111)
T PF13514_consen 676 EQLEEELQQLEQELEEAEAELQEAQEALEEWQEE 709 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 175
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.62 E-value=14 Score=44.57 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 162 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei 162 (473)
.-+..+....+.....+.+..+....+.....+....+....++..+..|+..+.....+...+.+.+..+....
T Consensus 841 e~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l 915 (1294)
T KOG0962|consen 841 EIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVEL 915 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhH
Confidence 334444444555556666666667777777777777777777788888888777777776665555554443333
No 176
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=7.7 Score=41.57 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM--ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 272 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e--i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~ 272 (473)
..|..+...+.++..++.+-++....|.++++.+-.. .-.+..+|.++-+-+......+..+.++++.|..+...+..
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666665432 22455777777777888888888888888888888887766
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhh
Q 011982 273 NVSSLRSQLSSDES---KKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG 345 (473)
Q Consensus 273 ~i~~L~~eL~~ae~---~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~ 345 (473)
.+++-=.-+..+-- ....+ .+..=.+=++|..+|..+-.-+.+.-.++..+-+|..|+.--..-+-+.++..
T Consensus 425 ~L~Rsfavtdellf~sakhddh-vR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEk 499 (521)
T KOG1937|consen 425 ALNRSFAVTDELLFMSAKHDDH-VRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEK 499 (521)
T ss_pred HHhhhHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence 65544333332110 00000 00111133567777777777777777777777777776665444444444444
No 177
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.55 E-value=6.5 Score=40.46 Aligned_cols=211 Identities=13% Similarity=0.200 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 011982 79 QHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ-KEATLEETIKQ 157 (473)
Q Consensus 79 ~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq-ke~~le~eLee 157 (473)
.....+-..+..+..++..++.........||.=+.+|+................-..-+.++...-+ .+..+...+++
T Consensus 46 ~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee 125 (309)
T PF09728_consen 46 KKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555678888888888888888888888888888877777766555554444444444444322 23344444433
Q ss_pred HHHHHHHHHHHhhchHHHHHHH-------HHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 011982 158 LRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQK---EA-ALEQKISQLRDESAALNMKRASLEE-------RLK 219 (473)
Q Consensus 158 Le~ei~~L~~kl~~le~rl~~L-------K~ERD~wLqk---Ei-~Le~~I~~l~~el~~L~~ei~~Lee-------eie 219 (473)
.......+......+..++..| ..-.+..++. ++ -+.+.+................+.. .+.
T Consensus 126 ~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~ 205 (309)
T PF09728_consen 126 QSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQ 205 (309)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333 1111111111 11 2334444444444444455555555 777
Q ss_pred HHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 220 ~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
.+...-..|+.+++.+.+....+++.++....-+.....++..+-....+|...-..+..-..+....|-
T Consensus 206 ~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 206 TLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7777777777777777777777777766666666666666655555555555555555555555555553
No 178
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.54 E-value=6.8 Score=44.22 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhch
Q 011982 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL 242 (473)
Q Consensus 174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l 242 (473)
+++..-..||-.-+.....|...+...++.+..+....+.+...++.|..+++.|..........+...
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~ 270 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDH 270 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcch
Confidence 334333667777777766777777777777777777777777777777777777774333333444333
No 179
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.50 E-value=9.7 Score=42.24 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.4
Q ss_pred HHHHhhcccccc
Q 011982 455 SFVAKYVSGADL 466 (473)
Q Consensus 455 ~~~~~~~~~~~~ 466 (473)
-=+||-.||.+.
T Consensus 538 ~EiArml~G~~~ 549 (563)
T TIGR00634 538 AELARMLAGLEK 549 (563)
T ss_pred HHHHHHhCCCCc
Confidence 346777777653
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.47 E-value=1.5 Score=43.32 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
.-|..+..+++.|..+...|-++|..+...++.|..-+.++..+|.........+..++..|.++++.+...
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666666666666666666666666666666666666666666666666555
No 181
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.39 E-value=16 Score=44.19 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 251 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 251 ~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+.+.-|...+..+-.+...+-.....+.+.+..+++.|.
T Consensus 1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444444
No 182
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.30 E-value=2.1 Score=42.25 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 250 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 250 k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
...++.|...-+.+|.+..+....+..+..++..+.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.23 E-value=3 Score=37.09 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 255 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e 255 (473)
..++..|+.++..++...+.+-.-+..-.+.+..|+..+.+++.-+..
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554444444444445555555555555444433
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.16 E-value=7 Score=39.22 Aligned_cols=194 Identities=18% Similarity=0.177 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 123 YKEKVATLEETIQQLQRQNDLRMQK----EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 198 (473)
Q Consensus 123 ~~qk~~~LE~eLkeLq~eI~~~eqk----e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~ 198 (473)
+.+....|...+..|...|.+.+.. ...+-.+.+-+...++-+..... .++.+.+++..+|-.+.
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~---~~l~~ak~eLqe~eek~-------- 79 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNH---KQLQQAKAELQEWEEKE-------- 79 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHH--------
Confidence 3344445555555555555555443 22344444445555554444433 24555577777776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH----HHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011982 199 QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK----ETIAGLSVDITQLRM-QVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 199 ~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~----e~L~~l~~e~~~Lk~-q~~eL~deRK~LwrEe~kL~~~ 273 (473)
...+..|..++..+...|.....++..|....+--. -.|..|...+..++. +-.++.+-......+..+|.+.
T Consensus 80 --e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~ 157 (258)
T PF15397_consen 80 --ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRK 157 (258)
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666677777777777666443110 245555555544432 2222222222233333444443
Q ss_pred HHHHHHHHHH-HHHHHHh-hhh------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982 274 VSSLRSQLSS-DESKKLQ-HAT------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 274 i~~L~~eL~~-ae~~l~~-ae~------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~ 329 (473)
++.-...+-. +-...-. ... ...-.|...|...+-.|..+..+...|...|..|..
T Consensus 158 ~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 158 IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 1111111 101 144456666666666666666666666666555554
No 185
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.00 E-value=11 Score=40.79 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 85 EAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144 (473)
Q Consensus 85 e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~ 144 (473)
...+.+..+.+..+...+......++.+....-..+..+.......|.+|+.|+..++..
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333444444444444444444444444444444444433333344444444444333333
No 186
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.92 E-value=4.7 Score=43.73 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 141 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-----QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASL 214 (473)
Q Consensus 141 I~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-----K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~L 214 (473)
.++...++..+..+...++.+..-++.+-......-.++ |..||. +..+ .+.+.|..+..++....++...|
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~Kelrdt--N~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDT--NTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666644444333333 444443 3444 66677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 215 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 215 eeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
.+.|..++.+|-.+..+.+.+..-|......-.++..+..+++|+.-+......+-...+..|+
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777777777777666666666666666666666666666555555555555443
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.86 E-value=5 Score=36.52 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 011982 315 TENIELVEK 323 (473)
Q Consensus 315 ~Ey~~L~~k 323 (473)
.||..|.++
T Consensus 140 ~E~~kLk~r 148 (151)
T PF11559_consen 140 REIEKLKER 148 (151)
T ss_pred HHHHHHHHH
Confidence 334444433
No 188
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.82 E-value=9 Score=39.32 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
++-.++..-..+|..|..++....+.....+.++..|..++..++...+.+--|..+|...+...+
T Consensus 203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555555555555555555555566666666666666666655555555555544443
No 189
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.81 E-value=7.9 Score=38.65 Aligned_cols=40 Identities=10% Similarity=-0.108 Sum_probs=22.1
Q ss_pred Ccccccccc-c-cCCCCCCCccccchHHHHHHH----------HHHHHHHHH
Q 011982 50 PADIQNVQV-D-ADRHQSNGAESANLAEAERQH----------LLQREAILE 89 (473)
Q Consensus 50 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~----------~~q~e~~~~ 89 (473)
+|-+--++| + ..+|.|+-+..-.+.-.++.+ |.|+|+...
T Consensus 45 ~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a~~elq~~ks~~Q~e~~v~ 96 (330)
T KOG2991|consen 45 VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMARDELQLRKSWKQYEAYVQ 96 (330)
T ss_pred CCCCCccchhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444 4 567778877666555554433 566666543
No 190
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=93.79 E-value=9.2 Score=39.33 Aligned_cols=104 Identities=14% Similarity=0.292 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH-------HHHHHHHHH
Q 011982 180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS-------VDITQLRMQ 252 (473)
Q Consensus 180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~-------~e~~~Lk~q 252 (473)
|.+..-|..+...++..+..-.......+.++..+...|..++.+--.|+..-++-...+=.|. ..+..++.+
T Consensus 221 K~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~k 300 (391)
T KOG1850|consen 221 KEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKK 300 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3343333333334444444444455555555555555555555555555443333222222222 223555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
+..|+.-.+.|..++..|...+..+...+..
T Consensus 301 iq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 301 IQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 6666666666666666666666665555544
No 191
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.77 E-value=7.6 Score=38.63 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 251 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~ 251 (473)
++.++.+|+.+-..+.......+..+..+......+..+...|+.....++..+..|..+.....++-..|..++..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444444444555555555556666666666666666666666666665555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.+..|...+...-.|-..|...+...+..+..+...+
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776666677767666666666666666665
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.72 E-value=4.4 Score=43.35 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982 94 HLRNERESHIQKEATLEG-TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 172 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~-kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l 172 (473)
|++..+....+.+..++. +++..+............++.....++..-...+.+...+..+++.+.+++..++
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~------ 402 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER------ 402 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344444444444444444 4444455555555555555555555555555555555555555555544444433
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011982 173 EMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkE 190 (473)
+.-..+.+.-+.|..+-
T Consensus 403 -E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 403 -EENKKLIKNQDVWRGKL 419 (493)
T ss_pred -HHHHHHHhhHHHHHHHH
Confidence 12223455555665554
No 193
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.64 E-value=13 Score=40.70 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
++.++.+.+..+-..++.-..--..+.+.+..+...+...........+....|..++.+-+.....+...+....+-+.
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444555555555555555555555556666666666666666666666555554
Q ss_pred hhh-------------h-h--------chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982 290 QHA-------------T-S--------EQKDFSTQIEAAGALIDKLITENIELVEKVNDL 327 (473)
Q Consensus 290 ~ae-------------~-~--------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL 327 (473)
.+. + + ++.+.+=-+++++.....++..-..|....+++
T Consensus 435 k~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ 494 (570)
T COG4477 435 KSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV 494 (570)
T ss_pred HcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 441 0 0 333333334555566655555555555544443
No 194
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.59 E-value=8.6 Score=38.33 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
.-..++..+..+..+...+..+....-.+...+.............+...+..+...|.....+...+.
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344456667777777777777777777777777777777777777777777777777777766654443
No 195
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.44 E-value=6.8 Score=36.68 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
+....+....|+.....|.+.+..|
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.28 E-value=1.4 Score=42.72 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
..++.++..++.+++.+..+ +.....+++..+..+..++.+|..+...|..+...+....+.|+.+++...+.+
T Consensus 96 p~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332 234444455555556666666666666666666666666666666666655544
No 197
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.22 E-value=2.4 Score=34.26 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156 (473)
Q Consensus 91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe 156 (473)
-..+|+..+..++..++.|+..+..|+.+...+......+..++..|+.+...|...+..+-.+|+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777778888888888888888888888888888888888888887777777777666655554
No 198
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.22 E-value=20 Score=41.43 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH----HHHHHHHHHHHHHHhhchHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA--------TLEET----IKQLRNQNDLHIQREGGLEMNIANLQ 180 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~--------~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK 180 (473)
+-.|+.+++...++...++.++..|...+.....++- .+... -.+..+....|..++.++..++....
T Consensus 26 ~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 26 AASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESA 105 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444444433211 11111 12233333344455555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 240 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~ 240 (473)
.|...+-+.-..-.+-|..+.........++..|...++..+.+..+|+-++.-+..+|.
T Consensus 106 ~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 106 AENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444445555555555555555555555555555555555555554444443
No 199
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.19 E-value=11 Score=42.58 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 242 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 242 l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
|..+...++.++.++.-.++.|...+..|+..+..|+
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455566666666666666666666666665555
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.88 E-value=10 Score=37.27 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
...-+.+..-+..+++=.+.+.+.+..++..+.++...+.........++.++..++.....|+.+
T Consensus 9 ~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 9 DLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777888888899999999999999999999999999999999999999999988876
No 201
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.84 E-value=8.1 Score=39.68 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhh
Q 011982 308 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGL 340 (473)
Q Consensus 308 ~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl 340 (473)
.++.++..|...|...|-.|..||++.-.....
T Consensus 219 vRLkKl~~eke~L~~qv~klk~qLee~~~~~~~ 251 (302)
T PF09738_consen 219 VRLKKLADEKEELLEQVRKLKLQLEERQSEGRR 251 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 348899999999999999999999877655543
No 202
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.78 E-value=8.1 Score=38.24 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 75 EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 154 (473)
Q Consensus 75 ~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e 154 (473)
...-+.+.+..+....++.++..+...+......++.++..|..........++..+.++..|+.+|.....-...+.+-
T Consensus 27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777888888888888888888888888888888888888888888888888888888877777776666665
Q ss_pred HHHHHHHHHH
Q 011982 155 IKQLRNQNDL 164 (473)
Q Consensus 155 LeeLe~ei~~ 164 (473)
+...-..+..
T Consensus 107 m~~m~~~L~~ 116 (251)
T PF11932_consen 107 MEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 203
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.75 E-value=26 Score=41.51 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
...++..+...++....||.....+.+..+.-+.
T Consensus 534 a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~ 567 (1041)
T KOG0243|consen 534 ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQE 567 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHH
Confidence 4455555555555555555555554444333333
No 204
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.75 E-value=12 Score=37.60 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEET----IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~e----LkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L 179 (473)
..+..|-.+.+.+......++.. +...+.++.+|+.+ .+..+..|+.+++.+.+++..++..+..|
T Consensus 38 ~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776654 44445555555443 45566667777777777776666666555
No 205
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.71 E-value=5.7 Score=38.38 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 164 (473)
Q Consensus 128 ~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~ 164 (473)
.-|..++++.+.++......+..+...+.+.+.....
T Consensus 13 sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~ 49 (202)
T PF06818_consen 13 SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRN 49 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444333
No 206
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.69 E-value=19 Score=40.16 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982 104 QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK-------EATLEETIKQLRNQNDLHIQREGGLEMNI 176 (473)
Q Consensus 104 q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk-------e~~le~eLeeLe~ei~~L~~kl~~le~rl 176 (473)
.+++.|+.+...|.-+..-+.+++..--+.|..|+.-|..+..+ +..-.-.+..|+.+.-.|.++..+++-++
T Consensus 111 erLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl 190 (861)
T KOG1899|consen 111 ERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL 190 (861)
T ss_pred HHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH
Confidence 33444443333344444444444444444444444444444333 22222223455666666666666665555
Q ss_pred HHHH
Q 011982 177 ANLQ 180 (473)
Q Consensus 177 ~~LK 180 (473)
..+.
T Consensus 191 talE 194 (861)
T KOG1899|consen 191 TALE 194 (861)
T ss_pred HHHH
Confidence 5553
No 207
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.60 E-value=6.5 Score=41.68 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 126 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 201 (473)
Q Consensus 126 k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~ 201 (473)
+....+..+..++.++...+++...+..++.-++.+.+.+.++++..+..+..||.|........+..+.....+.
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t 82 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLT 82 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666666666666666666666666666665555544444444333
No 208
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.52 E-value=17 Score=38.73 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 270 LKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l 288 (473)
|.+..+..+.-+..+-..+
T Consensus 347 L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 347 LQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 209
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.51 E-value=2.2 Score=35.04 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
+.|+..|...-+.|.-+.-+|..+.+....+..+...+...|..|.++..+|+.....-+..|..+-..
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555666666666666666666666666677777777777776666666665554443
No 210
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.44 E-value=14 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.6
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 332 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~ 332 (473)
-+.|.--+...+..|+.||..|.+++-.....+-
T Consensus 269 ~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEKa 302 (305)
T PF14915_consen 269 SEKQVLLLEERNKELINECNHLKERLYQYEKEKA 302 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555677888999999999998877766554
No 211
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.43 E-value=8.3 Score=35.06 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 164 (473)
Q Consensus 105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~ 164 (473)
....+..++..+..++.........++..+..++.++..++.++..+...+..+......
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555554555444444444444444333
No 212
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=2.5 Score=46.72 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHH
Q 011982 138 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL--QSEKEFWLQKE 190 (473)
Q Consensus 138 q~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L--K~ERD~wLqkE 190 (473)
...+.......+.++.++..|+..+.++...+..|+.++..| ...-+.|...+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~re 475 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE 475 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333333333344444444444444444444444444444444 22233444444
No 213
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.16 E-value=16 Score=37.62 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011982 261 NNLLQENRQLKENVSSLRSQLSSDESKKLQHAT 293 (473)
Q Consensus 261 K~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~ 293 (473)
+.+..+...|++.++.-......+.+.++.+++
T Consensus 264 k~ireEN~rLqr~L~~E~erreal~R~lsesEs 296 (310)
T PF09755_consen 264 KEIREENRRLQRKLQREVERREALCRHLSESES 296 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665555556666655543
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.00 E-value=7.2 Score=41.02 Aligned_cols=74 Identities=7% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982 100 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 176 (473)
Q Consensus 100 ~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl 176 (473)
+.|...+.++..-...+..........+..+..++...-.+|.+.++- +..++..+-.+......++...+.++
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444555554444444444333 22333333333333333444333333
No 215
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.63 E-value=15 Score=36.33 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
..+.|-.....+..++..+..++..+......++..+...+.++..|..++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444433433333333333333
No 216
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.55 E-value=17 Score=36.74 Aligned_cols=200 Identities=15% Similarity=0.186 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 84 REAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 163 (473)
Q Consensus 84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~ 163 (473)
..+.+..+-..+...+......+..|-.++.+...+...+.-....++..+..++.+.+..-.=--.... +.-.+.+
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~---e~gterq 86 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKI---EFGTERQ 86 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchh---hccchhh
Confidence 4455555555666666666666666666666666666666666666666665555544433221000000 1111112
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982 164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 243 (473)
Q Consensus 164 ~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~ 243 (473)
.|...+..++..-.+|.-+|..++++..+|..+...++....+...++..--.+-..-.++-=+|+-...+.-....+++
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLk 166 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLK 166 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHH
Confidence 22222333333333456666677766667777777666666666666555444444444444445555556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 244 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 244 ~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
.....|-..+..+.+...+|.-|+........+|..+|.-+-+
T Consensus 167 ak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLn 209 (389)
T KOG4687|consen 167 AKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALN 209 (389)
T ss_pred HHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 7777777778888888888888888888999999888876543
No 217
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.53 E-value=22 Score=38.02 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 262 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~ 262 (473)
+..+++.+..|+.+-.++...+.-|....+.+.+....+...+..+..++-..++.|+.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666655555555555555566665555555555443
No 218
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=91.49 E-value=19 Score=37.15 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=64.3
Q ss_pred HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h----chhc
Q 011982 225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT--S----EQKD 298 (473)
Q Consensus 225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~--~----~~~d 298 (473)
--.|..++..+-+...+++..+.....-.+...++...+-....+|..+--.-+.-+.++...|-.+.. + .++.
T Consensus 217 e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~ 296 (391)
T KOG1850|consen 217 EGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYET 296 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555555555555533311 1 6777
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
++.+|+.+--.-..|..|-++|..++..|.++
T Consensus 297 lq~kiq~LekLcRALq~ernel~~~~~~~e~~ 328 (391)
T KOG1850|consen 297 LQKKIQRLEKLCRALQTERNELNKKLEDLEAQ 328 (391)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHhcc
Confidence 88888888888888888888888888777763
No 219
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.44 E-value=38 Score=40.60 Aligned_cols=6 Identities=0% Similarity=-0.114 Sum_probs=2.2
Q ss_pred cccccc
Q 011982 357 EPMSES 362 (473)
Q Consensus 357 g~l~el 362 (473)
+.|+++
T Consensus 880 ~~L~~l 885 (1047)
T PRK10246 880 GYLNSL 885 (1047)
T ss_pred HHHHHH
Confidence 333333
No 220
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.41 E-value=20 Score=40.86 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 011982 258 ESRNNLLQENR 268 (473)
Q Consensus 258 deRK~LwrEe~ 268 (473)
.+|+.|+.+..
T Consensus 300 ~~r~kL~N~i~ 310 (670)
T KOG0239|consen 300 EERRKLHNEIL 310 (670)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 221
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.32 E-value=16 Score=35.95 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 93 KHLRNERESHIQKEATLEGTVQQLQNECDLY 123 (473)
Q Consensus 93 ~qlE~E~~~l~q~~a~LE~kikeL~eei~~~ 123 (473)
.....+...+.+.+..+-..++.+..++...
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3333334444444444444444444444433
No 222
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.07 E-value=17 Score=35.82 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=5.8
Q ss_pred hchHHHHHHhhh
Q 011982 297 KDFSTQIEAAGA 308 (473)
Q Consensus 297 ~dMe~ql~~~~~ 308 (473)
.+++.++.++|.
T Consensus 194 ~dl~~e~a~~~~ 205 (225)
T COG1842 194 DDLDKEFAQAGA 205 (225)
T ss_pred ccHHHHHHHhcc
Confidence 445555555444
No 223
>PRK10869 recombination and repair protein; Provisional
Probab=91.07 E-value=29 Score=38.57 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
+-.+.+.+-+....+...+.++........+.+..++-++++|
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555555555555555544
No 224
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=90.90 E-value=9.7 Score=35.86 Aligned_cols=99 Identities=10% Similarity=0.146 Sum_probs=59.3
Q ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhHHHHHhchHHHHHH
Q 011982 175 NIANLQS---EKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEER--LKLLEADKDSWTQMESVSKETIAGLSVDITQ 248 (473)
Q Consensus 175 rl~~LK~---ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leee--ie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~ 248 (473)
+.++|.. +-+.-|...| .+++.+..+.........++..|.+- +.+++++|++|.++..+..++|..+.+..+.
T Consensus 69 ~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 69 DQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred cHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566633 5555555665 66666666666666666666666553 4566677777777777777777777655432
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 249 L----RMQVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 249 L----k~q~~eL~deRK~LwrEe~kL~~~ 273 (473)
. +.++...-...=+-||.+.+.-+.
T Consensus 149 vtpedk~~v~~~y~~~~~~wrk~krmf~e 177 (201)
T KOG4603|consen 149 VTPEDKEQVYREYQKYCKEWRKRKRMFRE 177 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333333334444667777765544
No 225
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.90 E-value=43 Score=40.19 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=13.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982 303 IEAAGALIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 303 l~~~~~~~~~l~~Ey~~L~~k~neL~ 328 (473)
.+++..+-.+|..+-+.-+.++++|.
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444455555555
No 226
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.88 E-value=3.5 Score=38.34 Aligned_cols=7 Identities=0% Similarity=0.145 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 011982 262 NLLQENR 268 (473)
Q Consensus 262 ~LwrEe~ 268 (473)
..|+.+.
T Consensus 159 k~w~kRK 165 (169)
T PF07106_consen 159 KEWKKRK 165 (169)
T ss_pred HHHHHHH
Confidence 3444443
No 227
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=18 Score=40.23 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~ 244 (473)
+......+..+...++.|+.++..|+.++..++.++..++.++..+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 228
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.85 E-value=0.48 Score=48.75 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 146 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 225 (473)
Q Consensus 146 qke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI 225 (473)
..+..+.++|..|+..+..+..-.+.+..++. .+...|..+...+..+..++..+...|..++..|
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iS--------------dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl 93 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTIS--------------DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555443322222 2233333333333344444444444444444444
Q ss_pred HHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 226 DSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 226 ~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
..+...+.++...+...+..+..|+..+..+.-..-+|......+.-.+..|+..+..+|.-
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 44444444444444444444444444444444444444444444444444444444444433
No 229
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=90.67 E-value=18 Score=35.52 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEA 107 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a 107 (473)
...+.++-.+++.+.+.+.
T Consensus 44 ~~~i~~aP~~~~~l~~~l~ 62 (240)
T PF12795_consen 44 QKQIDQAPKEIRELQKELE 62 (240)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333
No 230
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.66 E-value=47 Score=40.24 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCcc
Q 011982 313 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTS 354 (473)
Q Consensus 313 l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~ 354 (473)
+.+|+..+-+.++-|. +....-+..+.....++.|++
T Consensus 1223 ~eqe~~~~~k~~~klk-----rkh~~e~~t~~q~~aes~l~~ 1259 (1320)
T PLN03188 1223 AEQEAAEAYKQIDKLK-----RKHENEISTLNQLVAESRLPK 1259 (1320)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCCh
Confidence 4455555555555554 233345556666555666633
No 231
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.58 E-value=8.8 Score=40.36 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=20.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 182 EKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 182 ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
-|+..|+.+. .+-.+....+..+...+.........+..+..+++.+..+++
T Consensus 259 sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 259 SREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444555543 333333333333333333333333333333333333333333
No 232
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=90.56 E-value=7.6 Score=32.94 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 210 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL 281 (473)
++..++.....+...+.....++..+++.+..+..+++....++-.++-.++.+..|...|+..+..-..-+
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444444444555555555555555555555555555555555555554444433333
No 233
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.48 E-value=4.8 Score=32.30 Aligned_cols=65 Identities=25% Similarity=0.245 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 220 ~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
.|+..|...-+.|.-+.-++..+.+..+.|......++..|..|.++...|......-+..+..+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555556666666666666677777777777766666555555443
No 234
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.23 E-value=29 Score=37.09 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 011982 157 QLRNQNDLHIQREGGLEMNIANLQ-SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS 235 (473)
Q Consensus 157 eLe~ei~~L~~kl~~le~rl~~LK-~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~ 235 (473)
.|-..+..|..+...+++.+.+.+ --+..+.++.-+++++--.....+..|.-+..+|+..+++-+ +.| .+.+
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEq---Eal---vN~L 206 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQ---EAL---VNSL 206 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHH---HHH---HHHH
Confidence 455666666666665555554443 233444444446666555555556666666666655444333 222 2368
Q ss_pred HHHHhchHHHHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQVVE 255 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~e 255 (473)
+.+|..|+.+..-|+.++++
T Consensus 207 wKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 207 WKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88999999888888888754
No 235
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.12 E-value=6.2 Score=31.91 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLK 271 (473)
Q Consensus 258 deRK~LwrEe~kL~ 271 (473)
+++..|..+..+|.
T Consensus 39 ~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 39 EENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 236
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.01 E-value=41 Score=38.58 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE 132 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~ 132 (473)
+..+..+...+..+...+...+..-.++.-+++..++.+..+..
T Consensus 835 E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~Lnk 878 (1480)
T COG3096 835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR 878 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888888888887766654
No 237
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.00 E-value=30 Score=37.00 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
+|..-+..++..+...+.....+.....-|...+..+.
T Consensus 245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~q 282 (446)
T KOG4438|consen 245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQ 282 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 34444444444444555555555555555554444443
No 238
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.96 E-value=5.8 Score=33.66 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=49.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 188 QKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 266 (473)
Q Consensus 188 qkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrE 266 (473)
+.|+ .++.....+.........++..++..+..+..++..-..+.-.....+..+..++..|..++..-.+-...|..-
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455 666666666666666666666667777776666666666554454555555555555555555444444444443
Q ss_pred HHHHHHHHH
Q 011982 267 NRQLKENVS 275 (473)
Q Consensus 267 e~kL~~~i~ 275 (473)
+..+.+.+.
T Consensus 82 E~~~~~~l~ 90 (96)
T PF08647_consen 82 EKEFVRKLK 90 (96)
T ss_pred HHHHHHHHH
Confidence 443333333
No 239
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.87 E-value=32 Score=37.18 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 011982 102 HIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 181 (473)
Q Consensus 102 l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ 181 (473)
|...+..|..+-+.-+.+|..+.-.-.-|+..+++|+..+...+ -+-.-|..|+..+++|...-- ++---|.
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq----vfvDiinkLk~niEeLIedKY----~viLEKn 386 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ----VFVDIINKLKENIEELIEDKY----RVILEKN 386 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHhHh----Hhhhhhh
Confidence 33444444444444455555555555555555555554433222 222233333333333333222 1110133
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------hHHHHHhchHHHHHHHH
Q 011982 182 EKEFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-------VSKETIAGLSVDITQLR 250 (473)
Q Consensus 182 ERD~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~-------~~~e~L~~l~~e~~~Lk 250 (473)
+-+.-++.-. ..++.+..-+.+...|+.++..+...+-.|++.-..--++.+ .....|+.-++++..|+
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333332221 444555556666666666666666666666654433222221 23344444444444444
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 251 MQVVELE----ESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 251 ~q~~eL~----deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
.-.-+|. -...-|.||.......+-+|+.++++-+
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 2223455555555555556666655543
No 240
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.75 E-value=20 Score=34.57 Aligned_cols=41 Identities=12% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 124 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 164 (473)
Q Consensus 124 ~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~ 164 (473)
.+.+..++..+..++..+.........++.++..+...+..
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333333333344444444333333
No 241
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.56 E-value=54 Score=39.33 Aligned_cols=9 Identities=11% Similarity=0.302 Sum_probs=4.2
Q ss_pred ceecCCCCC
Q 011982 26 VAVGADPNH 34 (473)
Q Consensus 26 ~~~~~~~~~ 34 (473)
..|-|.+.|
T Consensus 506 CPVCGS~~H 514 (1047)
T PRK10246 506 CPLCGSTSH 514 (1047)
T ss_pred cCCCCcccC
Confidence 344444444
No 242
>PF13166 AAA_13: AAA domain
Probab=89.50 E-value=42 Score=37.98 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=16.6
Q ss_pred ccccccccCCccccccccccccccccc--cCCcceee--cC
Q 011982 357 EPMSESSDNMSSLNNRLETQGVVAVKE--DRNGINGV--HA 393 (473)
Q Consensus 357 g~l~el~~~~~v~~~~~~t~~e~~~~~--agns~vvv--~d 393 (473)
.||.-|-. +.+|.++--+-... +....|.| |+
T Consensus 535 DPISSLD~-----~~~~~v~~~l~~~~~~~~~~QviIlTHn 570 (712)
T PF13166_consen 535 DPISSLDH-----NRRFGVASRLKEEIKNSKFRQVIILTHN 570 (712)
T ss_pred CCCCCCCH-----HHHHHHHHHHHHHhhcCCcceEEEEeCc
Confidence 35544444 46666665543344 33336666 55
No 243
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.49 E-value=41 Score=37.78 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 011982 124 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 177 (473)
Q Consensus 124 ~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~ 177 (473)
.++++.|+..-..|.-+......+.+...++|..|+--+..+..++...++.+.
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ 163 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ 163 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH
Confidence 344444444444444444444444555556666777777777777776555544
No 244
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.43 E-value=37 Score=37.28 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 011982 206 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 264 (473)
Q Consensus 206 ~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lw 264 (473)
.+..++..+...+..|++++..-+. +++++|+.|.+.+..|..++....|+-..|.
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTRR---NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433333 6666666666666666666666655554443
No 245
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=89.37 E-value=15 Score=37.50 Aligned_cols=98 Identities=10% Similarity=0.051 Sum_probs=51.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 68 AESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
++|-+-.+-=+.++.-+|..+......|..=.+.....+..+...-+.|++++..+.++-..+..++.+++........-
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444445555555555555555555555666666666666666666666666666666665554444333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011982 148 EATLEETIKQLRNQNDLH 165 (473)
Q Consensus 148 e~~le~eLeeLe~ei~~L 165 (473)
...-...|.++-.+++.+
T Consensus 303 v~~rT~~L~eVm~e~E~~ 320 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQL 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344433333333
No 246
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=89.37 E-value=24 Score=35.01 Aligned_cols=170 Identities=11% Similarity=0.097 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 73 LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 73 ~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
+.|--+.|+.+.+.+-+-=. +.-..+..|-+-+-....+|..|..+......--..+..++.-+-....+.+.-+..++
T Consensus 76 LeeliNkWs~el~~Qe~vF~-~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE 154 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFL-QQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLE 154 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665522211 11223444555555555555555555555444444444444444333332222222222
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
..+.....- .+ +.+.-.||..--.--..+...+.++...+..+-..+.....-...-. .|..+.+-+
T Consensus 155 ~k~~~~~g~---~~---------~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~-~~~qi~Kil 221 (254)
T KOG2196|consen 155 TKLELQSGH---TY---------LSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTD-PIIQIEKIL 221 (254)
T ss_pred HHHhccccc---hh---------hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCC-chHHHHHHH
Confidence 222211100 00 11113333333332224444455444444444444433322222111 234445555
Q ss_pred HhHHHHHhchHHHHHHHHHHHHHH
Q 011982 233 SVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 233 ~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
+.+.+.|.-+......+..+++.+
T Consensus 222 nah~~sLqwl~d~st~~e~k~d~i 245 (254)
T KOG2196|consen 222 NAHMDSLQWLDDNSTQLEKKLDKI 245 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 556666666665555555555444
No 247
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.23 E-value=6.9 Score=32.16 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI 155 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL 155 (473)
|+.+|.++=+.+..+.-.+..++.+-..|..+..........+..++..|+.+...|+.++..+-.++
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444444444455566677777666666666655544433
No 248
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.00 E-value=7.6 Score=37.67 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
.|..+..+|...+..++.+++.+
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 249
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.96 E-value=5.8 Score=31.81 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 210 (473)
Q Consensus 152 e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~e 210 (473)
+..+..|+..++.+..+.+..+.....+..|||..+.+--.+-..+..++.++..+..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555666667777777766644444444444444444433
No 250
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.89 E-value=47 Score=37.68 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 011982 273 NVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 273 ~i~~L~~eL~~ae~~l~~a 291 (473)
.+.-|+.++..+++.+.+.
T Consensus 276 tv~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRL 294 (716)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445566666666666555
No 251
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.80 E-value=7.8 Score=31.41 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 102 HIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 102 l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
+.+.++.-...|.+|..+...+..+...+...|+.|+..+...+.....+..++..+...+..+...+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666777777777777777777777777777777777777766666666666666666655443
No 252
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.68 E-value=29 Score=39.79 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=22.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 332 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~ 332 (473)
.+.++..+.-..+....=|..|++|..|+.+...
T Consensus 368 ~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 368 TQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555666667778888888888776543
No 253
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=88.57 E-value=27 Score=34.50 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLK-LLEADKDS 227 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie-~Le~EI~~ 227 (473)
.+......+...++.|..++..++..+...+.+|..-+.... .+...+..+...+..-......-+..|- .+......
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666666666554444 6666666666555554444433333222 12222222
Q ss_pred HHH----HhHhHHHHHhchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 228 WTQ----MESVSKETIAGLSVDITQLRMQVVELEESR-NNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 228 L~~----ei~~~~e~L~~l~~e~~~Lk~q~~eL~deR-K~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+.. +.......++.+...+..+......-.+.- ..+..|...|...+.....+-..+...+-+|
T Consensus 162 l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~a 230 (247)
T PF06705_consen 162 LQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQA 230 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 222 112233444444444444433332222222 2244555555555555444444444444444
No 254
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=88.55 E-value=34 Score=35.71 Aligned_cols=66 Identities=26% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 84 REAILEETVKHLRNERESHIQKE-------ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA 149 (473)
Q Consensus 84 ~e~~~~~ei~qlE~E~~~l~q~~-------a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~ 149 (473)
.|.....-|..|+.++..+.+-- +-||....+|+.+++-....+...+..-+.|...+.....+..
T Consensus 112 aE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 112 AEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666543 3455666666666666666666666666666555555544433
No 255
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.51 E-value=8.3 Score=30.97 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 91 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE 148 (473)
Q Consensus 91 ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke 148 (473)
.+.++=+-+..+.=.+..|..+-..|..+.......+..++.+...|+.+...|+..+
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444555555544444444443
No 256
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.50 E-value=7.6 Score=31.13 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 109 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 109 LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
|+-.+..|.+.+++..++....+..++.|..+-......+.....++..|+.+++.+..++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666555555555555555555555555555555443
No 257
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.48 E-value=24 Score=35.78 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=12.2
Q ss_pred HHHHHHHHH-HHHHHHH
Q 011982 183 KEFWLQKEA-ALEQKIS 198 (473)
Q Consensus 183 RD~wLqkEi-~Le~~I~ 198 (473)
|+.|+..|= .+++++.
T Consensus 102 rEDWIEEECHRVEAQLA 118 (305)
T PF15290_consen 102 REDWIEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 678999886 6666665
No 258
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.47 E-value=67 Score=38.98 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhh
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLS 341 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~ 341 (473)
.||-|...-++...+|+.+|..-+.-. ++|+..++-+=.=-..-++-|++|.+|+|.|.. +++...-|+.
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~--------eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~--~hr~i~egi~ 1138 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCA--------EELKEAMQMAMEGHARMLEQYADLEEKHIQLLA--RHRRIQEGID 1138 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 466666664444566666665433211 223444444444456678899999999999998 6788899999
Q ss_pred hhhhhhcccCCccc
Q 011982 342 SAIGSDAVTALTSD 355 (473)
Q Consensus 342 s~~~~~~~~~l~~v 355 (473)
=|...+.+-|+.|.
T Consensus 1139 dvkkaaakag~kg~ 1152 (1320)
T PLN03188 1139 DVKKAAARAGVRGA 1152 (1320)
T ss_pred HHHHHHHHhccccc
Confidence 99998888888774
No 259
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.20 E-value=0.82 Score=47.10 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHH
Q 011982 173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 252 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q 252 (473)
.+|+..+..-...+-..--.+...|..+...++.+...+.++..++..+...|..+...+.++...+.++...+......
T Consensus 34 ~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ss 113 (326)
T PF04582_consen 34 RERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSS 113 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhh
Confidence 33444444333343334448999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT 293 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~ 293 (473)
+..|+-....+--+..-|++.+......|..+++.|...|.
T Consensus 114 IS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 114 ISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 260
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.15 E-value=54 Score=37.47 Aligned_cols=7 Identities=0% Similarity=-0.225 Sum_probs=2.9
Q ss_pred ccccccc
Q 011982 371 NRLETQG 377 (473)
Q Consensus 371 ~~~~t~~ 377 (473)
|.|..|+
T Consensus 390 DGYnVCI 396 (670)
T KOG0239|consen 390 DGYNVCI 396 (670)
T ss_pred cCcceeE
Confidence 4444443
No 261
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.14 E-value=30 Score=34.60 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK----EATLEETIKQLRNQN 162 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk----e~~le~eLeeLe~ei 162 (473)
.....-.+..++.......-+.+|- .|..++..++.+...++.....|..+......+ .......+..|+..+
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl 100 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL 100 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444454444433333322 223333333333444444444444443333222 222333334444444
Q ss_pred HHHHHHhhchHHHHHHHHHHHH
Q 011982 163 DLHIQREGGLEMNIANLQSEKE 184 (473)
Q Consensus 163 ~~L~~kl~~le~rl~~LK~ERD 184 (473)
....+....++..+..|....|
T Consensus 101 sqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 101 SQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444434444444433333
No 262
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.76 E-value=31 Score=36.81 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=10.2
Q ss_pred cCCceeeecCCCCCcchh
Q 011982 407 YSGEIVQIPLDDKEVQDL 424 (473)
Q Consensus 407 ~~gritf~PLn~~~~~~~ 424 (473)
-+|+||-+.|..-.-+-.
T Consensus 340 ~gg~vtSl~ls~~g~~lL 357 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELL 357 (459)
T ss_pred cCcceeeEeeccCCeEEe
Confidence 466777666655544433
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.75 E-value=5.2 Score=39.14 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSW 228 (473)
Q Consensus 214 Leeeie~Le~EI~~L 228 (473)
+...+.++..+-..|
T Consensus 140 ~kekl~E~~~EkeeL 154 (290)
T COG4026 140 LKEKLEELQKEKEEL 154 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 264
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.75 E-value=18 Score=36.50 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 274 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i 274 (473)
..++......+.....+++.+..++...+..++++...+.+.+..+..|+.++-.+......+++.+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444443333
No 265
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.68 E-value=24 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
|......+..+..++..+..+...+...+..+..
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 266
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.59 E-value=38 Score=35.17 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNE 98 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E 98 (473)
||+...--...++..|+.+-+.
T Consensus 62 e~qlk~aa~~llq~kirk~~e~ 83 (401)
T PF06785_consen 62 EKQLKTAAGQLLQTKIRKITEK 83 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444333333444444444333
No 267
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.51 E-value=25 Score=32.85 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 221 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L 221 (473)
++.+-.+|+..||.+-+....+...|.....-...+..-+.=|..++..+
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33344444555554444444444444444443333333333333333333
No 268
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.26 E-value=8.5 Score=35.75 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hHHHHHhchHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES--VSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~--~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
+..+..++..|..++..+..++..++.++..|..... .+...+..+..++..+...+..|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444443332 233444444444444444444443
No 269
>PRK11519 tyrosine kinase; Provisional
Probab=87.17 E-value=28 Score=39.88 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=23.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011982 299 FSTQIEAAGALIDKLITENIELVEKVNDLSVKL 331 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~ 331 (473)
.+.++..+.-..+....=|..|++|+.++.+..
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 444555666677777788888888888887643
No 270
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.15 E-value=34 Score=34.05 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 257 EESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 257 ~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
..+|-..|.....|...+..|..+|..+..
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELEQLKD 203 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666666666655543
No 271
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.13 E-value=9.6 Score=37.35 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 259 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~de 259 (473)
+..+..+...|..++..++.++.+.+..|..|+.+...+.+.+..+-.++.+|+..+.+|.+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333444444555556666666666666666666665555666666666666666666666544
No 272
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.03 E-value=55 Score=36.36 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 98 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ 135 (473)
Q Consensus 98 E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLk 135 (473)
+++.+......+...+.++..+.....+++..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 273
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=86.90 E-value=29 Score=32.99 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
.+|...+..-.-|..++.-++..+..-..+|+..+...+.++..-..-...+..-...++.|+.++..|...-..-
T Consensus 64 ~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~a 139 (178)
T PF14073_consen 64 SQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLA 139 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444446677777777765555533223333333344455555555554443333
No 274
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=86.29 E-value=52 Score=35.40 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=17.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 302 QIEAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 302 ql~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
++..+-...+...+=|..++.|+-++.++
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555566677777777777763
No 275
>PRK10698 phage shock protein PspA; Provisional
Probab=86.27 E-value=35 Score=33.38 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
....+..|+.++......+..+...+..|+..+.+++.+...|
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 276
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.98 E-value=42 Score=33.96 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 272 (473)
Q Consensus 193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~ 272 (473)
+..-|.....++..++..+..+..+-..|+..|+..+.+++-...++..|+.-.=.-..+++.|+.+.+.|+..=-.=-+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555544444444555555555555444444444
Q ss_pred HHHHHHHHHHH
Q 011982 273 NVSSLRSQLSS 283 (473)
Q Consensus 273 ~i~~L~~eL~~ 283 (473)
.++=|+.++..
T Consensus 247 Nl~yLe~qle~ 257 (267)
T PF10234_consen 247 NLDYLEHQLEE 257 (267)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 277
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.73 E-value=21 Score=36.67 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
+...+..+++..+...=.-|+|...-..|.=+++.++.++..+++.+..++.++.......+.+...+..++.++..+..
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888888888888888888888888888888888888888888776666666666666666666666555
Q ss_pred Hhh
Q 011982 168 REG 170 (473)
Q Consensus 168 kl~ 170 (473)
.+.
T Consensus 162 ~L~ 164 (302)
T PF09738_consen 162 QLK 164 (302)
T ss_pred HHH
Confidence 554
No 278
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.64 E-value=36 Score=39.07 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=6.4
Q ss_pred cCCceeeecCCC
Q 011982 407 YSGEIVQIPLDD 418 (473)
Q Consensus 407 ~~gritf~PLn~ 418 (473)
.+-||.+|=+|-
T Consensus 559 ~G~rVLlID~D~ 570 (726)
T PRK09841 559 SDQKVLFIDADL 570 (726)
T ss_pred CCCeEEEEeCCC
Confidence 344666665543
No 279
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.09 E-value=23 Score=33.95 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=27.8
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+..|..++..+..++.+...+.......+.+..+|......+..++.+++....
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455555666666666666666666555443
No 280
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.95 E-value=66 Score=35.38 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
+.+|..++..+..+...|...+..+..+++.++..+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666665555554
No 281
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.84 E-value=53 Score=34.18 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.++.-+..++.+...++.+++.+..++.+.+++-.+|..++.+.-.-...|.++...--.+-..+-+.|. --+.+|.
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ---~yI~~LE 207 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ---AYIGKLE 207 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH---HHHHHHH
Confidence 4555566666666666666666666666666666666655544444444444443222111112222222 2234455
Q ss_pred HHHHHHHHHHHHH
Q 011982 272 ENVSSLRSQLSSD 284 (473)
Q Consensus 272 ~~i~~L~~eL~~a 284 (473)
+.++.|--|+.++
T Consensus 208 sKVqDLm~EirnL 220 (401)
T PF06785_consen 208 SKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 282
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.78 E-value=47 Score=33.57 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982 178 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 178 ~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
.++..|..-+....++..--..++..+..+..++..++..+..+..+-..|...|+....++...+..+..|+.-+=.-+
T Consensus 145 ~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfm 224 (267)
T PF10234_consen 145 ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFM 224 (267)
T ss_pred hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34777777777766666666777777777777777777777777777777777777766777666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
|+...|-.|-++|....-.-=-.+.-++..+
T Consensus 225 dEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777776666666655443333344444444
No 283
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.76 E-value=67 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982 154 TIKQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 154 eLeeLe~ei~~L~~kl~~le~rl~~L 179 (473)
+..++...++-+.......+..+.+|
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Y 240 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQY 240 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444444444444
No 284
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=84.73 E-value=12 Score=32.43 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhHHHHHhchHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMESVSKETIAGLSVDITQ 248 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~L--e~EI~~L~~ei~~~~e~L~~l~~e~~~ 248 (473)
..+..+...+.....++..++.++..+ ..++..|.-.+.+....++.+.+++..
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334433333333344444444444444 333333333333333333333333333
No 285
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=84.58 E-value=49 Score=33.58 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=13.5
Q ss_pred ccccccccCCccccccccccccccccccC
Q 011982 357 EPMSESSDNMSSLNNRLETQGVVAVKEDR 385 (473)
Q Consensus 357 g~l~el~~~~~v~~~~~~t~~e~~~~~ag 385 (473)
+||..+.+ .+.+..-+.||+...+
T Consensus 229 ~~l~~i~~-----~~~~~v~~~v~e~~~~ 252 (327)
T TIGR02971 229 EGILEMGD-----TSQMYAVAEVYETDIN 252 (327)
T ss_pred CccEEEec-----CCcEEEEEEEcHHHHh
Confidence 56665555 3455666666665444
No 286
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=84.34 E-value=1.1 Score=50.24 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH---------------HHHHHHHHHHHHHHH----
Q 011982 201 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI---------------TQLRMQVVELEESRN---- 261 (473)
Q Consensus 201 ~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~---------------~~Lk~q~~eL~deRK---- 261 (473)
...+..|..-+..|+.........+..+...+..++..|.-..++. ..++.++.-|...++
T Consensus 206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk 285 (619)
T PF03999_consen 206 DENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLK 285 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455555555566666666666666666666666665554443332 333444444443332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982 262 ----NLLQENRQLKENVSSLRSQLSSDESKKLQHAT--------SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 262 ----~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~--------~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~ 329 (473)
.+|.|..+||....--..+............+ .++..|. +.-..+..|..+++++..|.++..+|..
T Consensus 286 ~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk-~~~~~~k~Il~~v~k~~~l~~~~~~Le~ 364 (619)
T PF03999_consen 286 EFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK-EEYESRKPILELVEKWESLWEEMEELEE 364 (619)
T ss_dssp -------------------------------------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543322222211111111100 0444444 3334456778889999999999999987
Q ss_pred hhhh--hhHHhh
Q 011982 330 KLDR--QSVAAG 339 (473)
Q Consensus 330 ~~~~--~~~~~G 339 (473)
.-+| |-..||
T Consensus 365 ~~~D~~Rl~~RG 376 (619)
T PF03999_consen 365 SSKDPSRLNNRG 376 (619)
T ss_dssp HHH-CCGG----
T ss_pred HhcChhhhcccc
Confidence 7665 445666
No 287
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.24 E-value=16 Score=35.68 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 274 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i 274 (473)
++++......++..+++++......+...+.....++.|.+.+.++...|-.+.++|+..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3444444444455555554445555555555555555566665555555555555555444
No 288
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.15 E-value=87 Score=36.10 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 108 TLEGTVQQLQNECDLYKEKVATLEETIQQ 136 (473)
Q Consensus 108 ~LE~kikeL~eei~~~~qk~~~LE~eLke 136 (473)
.+-+-+.-|..+.+.+.+++..+..++.+
T Consensus 384 EIALA~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 384 EIALAMQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666665555
No 289
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.69 E-value=42 Score=32.14 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 228 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 228 L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+..++.........++..+.++...+.+|+++...+..+....+..+.+++.....+...+..+
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444445555555555555555555555444444555555555555544444443
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=83.67 E-value=60 Score=37.22 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=5.2
Q ss_pred cCCceeeecCC
Q 011982 407 YSGEIVQIPLD 417 (473)
Q Consensus 407 ~~gritf~PLn 417 (473)
.+-||..|=+|
T Consensus 554 ~g~rvLlID~D 564 (719)
T PRK11519 554 TNKRVLLIDCD 564 (719)
T ss_pred CCCcEEEEeCC
Confidence 34445555443
No 291
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.65 E-value=1.1e+02 Score=36.67 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----h---hchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 267 NRQLKENVSSLRSQLSSDESKKLQHA----T---SEQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 267 e~kL~~~i~~L~~eL~~ae~~l~~ae----~---~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
+.-+...++.++.....+...+..+- + +-+..++..++-+.-....+.+.++.-..
T Consensus 627 r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~ 689 (1041)
T KOG0243|consen 627 RDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS 689 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555544444444443331 1 14556666777777777777777777666
No 292
>COG5283 Phage-related tail protein [Function unknown]
Probab=83.22 E-value=1.2e+02 Score=36.80 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 116 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 195 (473)
Q Consensus 116 L~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~ 195 (473)
|.+.+....+-...+|.+.+.-.........+.+.+.+.++....-+.++.++..+.-......+..++++-.....++.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777777777667777777777777888888888888888888776666666667777766666556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 196 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 196 ~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
.+..+..+......++.--+.++..+..+|..+..
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k 141 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNK 141 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666666666655555555555666655555555
No 293
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.00 E-value=91 Score=35.47 Aligned_cols=12 Identities=0% Similarity=0.149 Sum_probs=6.1
Q ss_pred cCCceeeecCCC
Q 011982 407 YSGEIVQIPLDD 418 (473)
Q Consensus 407 ~~gritf~PLn~ 418 (473)
+.-||++|-.|.
T Consensus 538 ~~~rVl~~~~np 549 (716)
T KOG4593|consen 538 NITRVLHMSTNP 549 (716)
T ss_pred hccceeeecCCc
Confidence 445555555443
No 294
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.70 E-value=31 Score=32.89 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESA 205 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~ 205 (473)
.+|..++.....+...+..++.++.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.70 E-value=49 Score=32.13 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.0
Q ss_pred hHHHHHHh
Q 011982 299 FSTQIEAA 306 (473)
Q Consensus 299 Me~ql~~~ 306 (473)
++.++..+
T Consensus 193 l~~~l~~l 200 (219)
T TIGR02977 193 LEDEFAEL 200 (219)
T ss_pred HHHHHHHh
Confidence 33333333
No 296
>PRK04406 hypothetical protein; Provisional
Probab=82.24 E-value=10 Score=30.92 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR 250 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk 250 (473)
++..|..|+..+.+....++.+.+.+...+.++..|+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333333
No 297
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.12 E-value=28 Score=30.10 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
..+...++.+....+.|-.....|...+..++..++
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 298
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=82.11 E-value=1.1e+02 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=10.2
Q ss_pred hHHHHHHhhhhHHHHHH
Q 011982 299 FSTQIEAAGALIDKLIT 315 (473)
Q Consensus 299 Me~ql~~~~~~~~~l~~ 315 (473)
...++.+++.+++.-..
T Consensus 424 ~e~k~~a~~q~iD~~e~ 440 (984)
T COG4717 424 REEKIAANSQVIDKEEV 440 (984)
T ss_pred HHHHHHhhcCCCCHHHH
Confidence 55566666666655443
No 299
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.04 E-value=75 Score=33.81 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------h---------c----hhchHHHHHHh
Q 011982 247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT-------S---------E----QKDFSTQIEAA 306 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~-------~---------~----~~dMe~ql~~~ 306 (473)
..|-.+.+.-......-.+|.++|.+.-+.|.+.|..--..+.-.-+ + + +-.-+..|+|+
T Consensus 445 ahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYL 524 (593)
T KOG4807|consen 445 AHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYL 524 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHH
Confidence 33444444444444555677888877777766655543333322211 0 3 33446789999
Q ss_pred hhhHHHHHHHHHHHHH
Q 011982 307 GALIDKLITENIELVE 322 (473)
Q Consensus 307 ~~~~~~l~~Ey~~L~~ 322 (473)
+..|.+|-.|.+....
T Consensus 525 KqEissLkDELQtalr 540 (593)
T KOG4807|consen 525 KQEISSLKDELQTALR 540 (593)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988765
No 300
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.93 E-value=52 Score=34.17 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~ 282 (473)
.|.++..-.......+...++
T Consensus 282 ~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 282 RLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 301
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.79 E-value=48 Score=33.63 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=31.4
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLY 123 (473)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~ 123 (473)
|-+|-.|..|| +++-=-.+-+..|++|...++...+++..-+..|.+|+.++...
T Consensus 47 dNHGikPP~PE----------QYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 47 DNHGIKPPNPE----------QYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred cCCCCCCCCHH----------HhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666666662 22212233345667777777776666666666666666665543
No 302
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.44 E-value=93 Score=34.50 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 011982 97 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 176 (473)
Q Consensus 97 ~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl 176 (473)
-+-+.-...+...+...++|.+.++.........+.++..|+....+..........+|..+.-.++....+.+.++..+
T Consensus 324 rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 324 RDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666666666666666666666666665555555555666666666666666666555444
Q ss_pred HHH-HHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 011982 177 ANL-QSEKEFWL----QKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS 235 (473)
Q Consensus 177 ~~L-K~ERD~wL----qkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~ 235 (473)
.+. +.+-|... ...| .++..++..+........+++++=.-+.+.+.+-..-...+..+
T Consensus 404 kkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiael 468 (654)
T KOG4809|consen 404 KKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAEL 468 (654)
T ss_pred HHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhc
Confidence 443 22222222 2222 44444555555555555555544444444444444333333333
No 303
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.41 E-value=58 Score=32.12 Aligned_cols=103 Identities=11% Similarity=0.208 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc-hHHHHHHHHHHHHH
Q 011982 178 NLQSEKEFWLQKEAALEQKISQLRDE-SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG-LSVDITQLRMQVVE 255 (473)
Q Consensus 178 ~LK~ERD~wLqkEi~Le~~I~~l~~e-l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~-l~~e~~~Lk~q~~e 255 (473)
.|..||..|...+..+-..+...... ...+..+...-+..+..+..++..+........+.+.. +-.+++.++..+..
T Consensus 136 ~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 136 AFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888777555555443322 23455566666777777777777777666666666666 44677777777777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH
Q 011982 256 LEESRNNLLQEN-RQLKENVSSLRSQ 280 (473)
Q Consensus 256 L~deRK~LwrEe-~kL~~~i~~L~~e 280 (473)
....|..--++. .-|.+....|++-
T Consensus 216 e~~~R~~~Dd~Iv~aln~yt~~lQ~~ 241 (247)
T PF06705_consen 216 ESQEREQSDDDIVQALNHYTKALQDG 241 (247)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 777777654443 2333334444333
No 304
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.39 E-value=17 Score=39.82 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 196 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG---L-SVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 196 ~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~---l-~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
.+..++.++..++.++..++.++..++..+..|..--......+.. . .....++..-......++..+..+...|.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666665432111111110 0 11234444444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011982 272 ENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l~~a 291 (473)
..+..++.++..++..+..+
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555443
No 305
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.39 E-value=95 Score=34.59 Aligned_cols=97 Identities=8% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM 174 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~ 174 (473)
++.+...+.+..+.|...+.+...++....+-...+..++..-..-+.........+...+..++...+....+..+.-.
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444444444443333333333333444444455555555555555554555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 175 NIANLQSEKEFWLQKEA 191 (473)
Q Consensus 175 rl~~LK~ERD~wLqkEi 191 (473)
.+..+-..++.|++...
T Consensus 492 al~el~~~~~~~~~~~~ 508 (607)
T KOG0240|consen 492 ALEELAVNYDQKSEEKE 508 (607)
T ss_pred HHHHHHHhhhHHHHHHh
Confidence 56666777777777663
No 306
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.33 E-value=48 Score=31.10 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 193 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK-ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 193 Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~-e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
+..-+...-..+..---...+++.....+...+..++.++.... ..++.+..+...|+.+++.+.+ .|..+..+|.
T Consensus 28 l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~---~L~~ei~~l~ 104 (177)
T PF07798_consen 28 LREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ---ELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHH--------HHHHHHHHHHHHHHhhhhh---chhchHHHHHHhhhhH
Q 011982 272 ENVS--------SLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALI 310 (473)
Q Consensus 272 ~~i~--------~L~~eL~~ae~~l~~ae~~---~~~dMe~ql~~~~~~~ 310 (473)
..+. ..+.+....+..+..+... ++.+|..+|+..+..+
T Consensus 105 a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 105 AEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.14 E-value=40 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
+..+....+.|......|...+..+...+....
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 308
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.11 E-value=19 Score=28.67 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 172 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l 172 (473)
++.|..+++.+......+..++..|+.+...|..+-..+..+.+..+..++.+...+-.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456677777777777777788888888888887777777777777777777766665543
No 309
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=81.05 E-value=41 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 246 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 246 ~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
+.-+...++.+....+.+..+...+...+..+...+..+
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555443
No 310
>PF15294 Leu_zip: Leucine zipper
Probab=81.03 E-value=68 Score=32.65 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhch
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE--ATLEETIKQLRNQNDLHIQREGGL 172 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke--~~le~eLeeLe~ei~~L~~kl~~l 172 (473)
+..++..+...-..+...++.++.+...+.+....++.+|+.++.......... ..-...+..|+.+...+..++...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHH
Q 011982 173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 252 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q 252 (473)
+........++...+.....++-..+..+..... .+...++. ...+..++.-
T Consensus 210 ------------------------~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aek---eLekKfqq-T~ay~NMk~~ 261 (278)
T PF15294_consen 210 ------------------------LQDKESQQKALEETLQSCKHELLRVQEQLSLAEK---ELEKKFQQ-TAAYRNMKEI 261 (278)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchh---hHHHHhCc-cHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQ 269 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~k 269 (473)
++.-.++-|.|++.-.+
T Consensus 262 ltkKn~QiKeLRkrl~k 278 (278)
T PF15294_consen 262 LTKKNEQIKELRKRLAK 278 (278)
T ss_pred HHhccHHHHHHHHHhcC
No 311
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.29 E-value=87 Score=33.47 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLR 278 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~ 278 (473)
.+|.-.......+.+++
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444445555554
No 312
>PF13166 AAA_13: AAA domain
Probab=80.23 E-value=1.1e+02 Score=34.62 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=4.2
Q ss_pred ceeecCCCc
Q 011982 388 INGVHADPP 396 (473)
Q Consensus 388 ~vvv~d~~a 396 (473)
.||+.|-++
T Consensus 530 iiViDDPIS 538 (712)
T PF13166_consen 530 IIVIDDPIS 538 (712)
T ss_pred eEEECCCCC
Confidence 444466433
No 313
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.96 E-value=21 Score=38.69 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~-~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
..|-.++..++.++..+..+-..|.++.+.+..+-..+..++. .+.....++..++..|..+..++...++.|...|..
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555555555555555555555555555555543 334556666777777777777777777777666643
No 314
>PRK02119 hypothetical protein; Provisional
Probab=79.82 E-value=11 Score=30.51 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHH
Q 011982 215 EERLKLLEADKDSWTQMESVSKETI 239 (473)
Q Consensus 215 eeeie~Le~EI~~L~~ei~~~~e~L 239 (473)
+..|..|+..+.+....++.+.+.+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333
No 315
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=79.66 E-value=1.3e+02 Score=35.06 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 179 LQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 179 LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
++..-|...-..+ .++......+..+..+..+...+-.++++++.+|-+
T Consensus 985 le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 985 LECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555444444 667667777777777777776666666666666654
No 316
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.43 E-value=98 Score=33.54 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHh
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 323 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k 323 (473)
.+.-+..++...+.+.+..|+..+..-+.+ .-..+++.+.+++...-+||+.|..+
T Consensus 462 ~ei~E~i~~tg~~~revrdlE~qI~~E~~k----------~~l~slEkl~~Dyqairqen~~L~~~ 517 (521)
T KOG1937|consen 462 MEILEMIRETGALKREVRDLESQIYVEEQK----------QYLKSLEKLHQDYQAIRQENDQLFSE 517 (521)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHhHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554444444332111 12234555666666666666666554
No 317
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.04 E-value=29 Score=27.22 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 116 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 166 (473)
Q Consensus 116 L~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~ 166 (473)
|+.-++.-.+....+..++..++...-..+.++.....+...|..++..|.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555544444444444333333333333333333
No 318
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.86 E-value=10 Score=30.61 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR 250 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk 250 (473)
++..|..|+..+.+....++.+.+.+...+.++..|+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444434433333333333
No 319
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=78.83 E-value=14 Score=40.79 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 262 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~ 262 (473)
+..+...+.+...++.+++....+|+++|++++..++.++..|-.-+.++..|+-.+++.+-+.++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 344444555666666777777777777777776666665555554444444444444444433333
No 320
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.51 E-value=58 Score=30.35 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 265 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr 265 (473)
+.+..+...|...+..|+.+...|.....++.+....+.+.-.+++..++.+++.-..+.+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666665555555555666666566666666666655554443
No 321
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.51 E-value=42 Score=34.05 Aligned_cols=15 Identities=0% Similarity=0.020 Sum_probs=7.0
Q ss_pred ccccccccccccccC
Q 011982 371 NRLETQGVVAVKEDR 385 (473)
Q Consensus 371 ~~~~t~~e~~~~~ag 385 (473)
+.+..-+.+|+...+
T Consensus 239 ~~~~v~~~v~e~~~~ 253 (334)
T TIGR00998 239 EQMYVEANFKETQLK 253 (334)
T ss_pred CcEEEEEecCHHHHh
Confidence 344555555544433
No 322
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.47 E-value=58 Score=33.83 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 011982 182 EKEFWLQKEA-ALEQKISQLRDESAALNM 209 (473)
Q Consensus 182 ERD~wLqkEi-~Le~~I~~l~~el~~L~~ 209 (473)
..-.|++.++ .++.++...+..+...+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777775 555555555444444433
No 323
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.37 E-value=1.3e+02 Score=34.32 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-------HHHhchH-HHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK-------ETIAGLS-VDITQLRMQVVELEESRNNL 263 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~-------e~L~~l~-~e~~~Lk~q~~eL~deRK~L 263 (473)
.|...+..+...+..+..+.+.-..++..+..+|+.+-..+.+.. .--..+. ..+++++.++.+|++++..=
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666666666655541 1111122 45567777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011982 264 LQENRQLKENVSSLRSQL 281 (473)
Q Consensus 264 wrEe~kL~~~i~~L~~eL 281 (473)
.++...+...+..|...|
T Consensus 180 lekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 180 LEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666665554
No 324
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.36 E-value=63 Score=30.74 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 199 QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 199 ~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
.++.+++.....-..|..++..+..+...+..++...+.... .+-.....-+..-+...-.||++...|++.+..++
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~---~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR---EEEENFNQYLSSEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333332222221 12222333334444556689999999999998888
Q ss_pred HHHHH
Q 011982 279 SQLSS 283 (473)
Q Consensus 279 ~eL~~ 283 (473)
....+
T Consensus 162 ~~Ter 166 (182)
T PF15035_consen 162 TATER 166 (182)
T ss_pred HHHHh
Confidence 76543
No 325
>PRK04406 hypothetical protein; Provisional
Probab=78.34 E-value=21 Score=29.04 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 139 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~ 139 (473)
.++..+..|.-+++..+..+.+|+.-+....+.+..+...+..|..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555444444444444444444444433
No 326
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.25 E-value=88 Score=36.39 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEA-ALEQKISQLRD 202 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~ 202 (473)
++.+...|+.+++.++.+.. .++.-+...+.
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555554443 33333443333
No 327
>PRK04325 hypothetical protein; Provisional
Probab=78.00 E-value=14 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhchHH
Q 011982 216 ERLKLLEADKDSWTQMESVSKETIAGLSV 244 (473)
Q Consensus 216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~ 244 (473)
..|..|+..+.+.+..++.+.+.+...+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~ 37 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQ 37 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333333
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.85 E-value=9.4 Score=39.70 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 011982 180 QSEKEFWLQKE 190 (473)
Q Consensus 180 K~ERD~wLqkE 190 (473)
..|+..|...-
T Consensus 290 ~~E~~RW~~~~ 300 (344)
T PF12777_consen 290 SGEKERWSEQI 300 (344)
T ss_dssp HHHHHCCHCHH
T ss_pred cchhhhHHHHH
Confidence 44555554444
No 329
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.81 E-value=31 Score=31.92 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHH---HHHHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSV---DITQLRMQVVELEESRN 261 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~---e~~~Lk~q~~eL~deRK 261 (473)
...++..+..++..+..++......|..|+. .+.+|+.++..|+...+
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443 45666666666665554
No 330
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.76 E-value=23 Score=35.37 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=37.2
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNE 119 (473)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~ee 119 (473)
|-|+++|-| +.. -..|.=+.+.++++|..|+.-+....+.+-.-+.+|.+|...
T Consensus 208 NG~~f~P~~-D~~------~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 208 NGDGFPPFG-DRD------PGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred CCCcCCCCC-CCC------CcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 456677744 111 123555777888888888888888777777777777777776
No 331
>PF14992 TMCO5: TMCO5 family
Probab=77.44 E-value=88 Score=31.87 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 110 EGTVQQLQNECDLYKEKVATLEETIQQLQRQND 142 (473)
Q Consensus 110 E~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~ 142 (473)
+.+...|.+....+.+++...+..+..|..+|.
T Consensus 10 e~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 10 EKDEQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555544444
No 332
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.41 E-value=10 Score=27.86 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 241 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 241 ~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
+++.....|+..++.|......|..|...|..++..|...++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667788888888888888888888888888888876553
No 333
>PF14992 TMCO5: TMCO5 family
Probab=77.33 E-value=88 Score=31.85 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 130 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L 130 (473)
++.+..++......+.+++...|..+..|..++.........-
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~ 51 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS 51 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch
Confidence 4556667777777888888888888888777777665544444
No 334
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.16 E-value=1.1e+02 Score=32.90 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 011982 156 KQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 156 eeLe~ei~~L~~kl~~le~rl~~L 179 (473)
..+..++..........+.++..+
T Consensus 242 ~~ln~ql~~~~~~~~~~~a~l~~~ 265 (458)
T COG3206 242 SALNTQLQSARARLAQAEARLASL 265 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 335
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.97 E-value=1.2e+02 Score=33.25 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 165 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L 165 (473)
-++|..++.--.+.++.+...|+.+.+.+....+.......+|.+++.+..+|
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~L 388 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVEL 388 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666655544444444444444443333
No 336
>PRK00295 hypothetical protein; Provisional
Probab=76.95 E-value=14 Score=29.50 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhc
Q 011982 218 LKLLEADKDSWTQMESVSKETIAG 241 (473)
Q Consensus 218 ie~Le~EI~~L~~ei~~~~e~L~~ 241 (473)
|..|+..+.+....++.+.+.+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~ 30 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333
No 337
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.72 E-value=1.1e+02 Score=32.45 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNERES 101 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E~~~ 101 (473)
.+-....+-+.|+..|..||.-+..
T Consensus 203 ~~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 203 AKSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCC
Confidence 3444566777788888888777665
No 338
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.69 E-value=1.3e+02 Score=33.56 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=11.8
Q ss_pred CCchhhhcccccccCCceee
Q 011982 394 DPPPLVLSSSEAEYSGEIVQ 413 (473)
Q Consensus 394 ~~a~~~~~~~~~~~~gritf 413 (473)
.++++|.++...--+|+|-+
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~ 472 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQ 472 (557)
T ss_pred CCCeEEEecccCCCChHHHH
Confidence 35566666666656666543
No 339
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.08 E-value=35 Score=37.43 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
.++..+-++..+|...+..|+.++..+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444444444444444333
No 340
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.02 E-value=27 Score=27.73 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=12.7
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 238 TIAGLSVDITQLRMQVVELEESRNNLLQENR 268 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~ 268 (473)
....+..++..|..+...+..+|..|.....
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433333
No 341
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.77 E-value=27 Score=30.17 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982 201 RDESAALNMKRASLEERLKLLEADKDSW--TQMESVSKETIAGLSVDITQLRMQVVELEE 258 (473)
Q Consensus 201 ~~el~~L~~ei~~Leeeie~Le~EI~~L--~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d 258 (473)
+..+..+...+...+..+..++.++..+ .+.+..+.-.|.++++++..+..++..+..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555 555555555555555555555555444433
No 342
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=75.70 E-value=1.3e+02 Score=33.10 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 011982 105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQ-LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 183 (473)
Q Consensus 105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLke-Lq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ER 183 (473)
....+-..+..+..-...+..-+......|.. |..++..+..+..-....+.+|...+..-.+..... .+ -.
T Consensus 259 E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a------gk-la 331 (531)
T PF15450_consen 259 EESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLA------GK-LA 331 (531)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh------hh-hh
Confidence 34444444445555555444444444444433 456666666665555666666555554443332211 00 01
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 184 EFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 184 D~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
.......+ .+++....+...+..+...+.+|...|..+...+..-++
T Consensus 332 ~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 332 QQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 11111122 333334444444445555555555555555555444333
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=75.32 E-value=64 Score=31.60 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 221 LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 280 (473)
Q Consensus 221 Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e 280 (473)
++++.+.+...+..+++++......+..++.+...|..+-..+.+|-..|-...++|++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444443
No 344
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=60 Score=28.90 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 011982 118 NECDLYKEKVATL 130 (473)
Q Consensus 118 eei~~~~qk~~~L 130 (473)
.+++...-.+..+
T Consensus 20 ~ql~~~~~qk~~l 32 (119)
T COG1382 20 QQLQKVILQKQQL 32 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 345
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.84 E-value=1.4e+02 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 011982 152 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 188 (473)
Q Consensus 152 e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLq 188 (473)
..+|+++.+.++.+...++.-..+++-++.....|..
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~ 389 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEK 389 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3334444444444444443333333333333333333
No 346
>PRK00736 hypothetical protein; Provisional
Probab=74.37 E-value=17 Score=28.91 Aligned_cols=11 Identities=18% Similarity=-0.021 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 011982 219 KLLEADKDSWT 229 (473)
Q Consensus 219 e~Le~EI~~L~ 229 (473)
..|+..+.+..
T Consensus 8 ~~LE~klafqe 18 (68)
T PRK00736 8 TELEIRVAEQE 18 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 347
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.29 E-value=1.4e+02 Score=32.71 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=12.0
Q ss_pred cccCCccccCcchhHHHHHHhhc
Q 011982 439 VPLTDAPLIGAPFRLVSFVAKYV 461 (473)
Q Consensus 439 vPl~~~~~~~~~f~~~~~~~~~~ 461 (473)
|=|+.+-..=+.+|.|.++-||-
T Consensus 340 VilvsPTTLla~LrtI~~~Wr~e 362 (475)
T PRK10361 340 IMLVSPTTLLVALRTIANLWRYE 362 (475)
T ss_pred EEEeChhHHHHHHHHHHHHHHHH
Confidence 33344444445666666665553
No 348
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.20 E-value=65 Score=33.13 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE---ESRNNLLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~---deRK~LwrEe~kL~~~i~~L~~eL 281 (473)
..+...+..++.++...+.++..+...+......+...+.++..++.++.... +.++.|+....--...++..+..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCC-cccc----
Q 011982 282 SSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL-TSDT---- 356 (473)
Q Consensus 282 ~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l-~~v~---- 356 (473)
..++..+..+ ..++..+...+..+......+...-..|......+....=-+=+.++.....+ .|-|
T Consensus 162 ~~a~~~l~~a--------~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~g 233 (346)
T PRK10476 162 RDAEVSLNQA--------LLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLEDTTVRAPFDGRVVGLKVSVGEFAAPM 233 (346)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCEEECCCCcEEEeeecCCCCCcCCC
Q ss_pred ccccccccCCccccccccccccccccccC
Q 011982 357 EPMSESSDNMSSLNNRLETQGVVAVKEDR 385 (473)
Q Consensus 357 g~l~el~~~~~v~~~~~~t~~e~~~~~ag 385 (473)
.||..+.+ .+.+..-+.||+...|
T Consensus 234 ~~l~~I~~-----~~~l~v~~~v~e~~~~ 257 (346)
T PRK10476 234 QPIFTLID-----TDHWYAIANFRETDLK 257 (346)
T ss_pred CeEEEEec-----CCCEEEEEEEcHHHHh
No 349
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=74.09 E-value=16 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 259 SRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 259 eRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
.|..|-.|...|...+...+.+|..+..
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3334444444444444444444444443
No 350
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.70 E-value=1.4e+02 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=7.7
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 011982 305 AAGALIDKLITENIELVE 322 (473)
Q Consensus 305 ~~~~~~~~l~~Ey~~L~~ 322 (473)
.+.+.+..++..|..+..
T Consensus 363 ~v~~~md~~~~~~n~V~~ 380 (446)
T KOG4438|consen 363 SVKAMMDDNIEKYNVVRQ 380 (446)
T ss_pred HHHHHHHHHHHHhcccch
Confidence 334444444444444443
No 351
>PRK00846 hypothetical protein; Provisional
Probab=73.43 E-value=31 Score=28.35 Aligned_cols=15 Identities=33% Similarity=0.171 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 011982 216 ERLKLLEADKDSWTQ 230 (473)
Q Consensus 216 eeie~Le~EI~~L~~ 230 (473)
..|..|+..+.....
T Consensus 13 ~Ri~~LE~rlAfQe~ 27 (77)
T PRK00846 13 ARLVELETRLSFQEQ 27 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 352
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=73.24 E-value=51 Score=27.18 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 011982 201 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 264 (473)
Q Consensus 201 ~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lw 264 (473)
...++.+...+..++.++..+..++..+-...+..-+.+...-..++.+-....++-+.-+.+|
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444433333333333333333344444444333333
No 353
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.19 E-value=1.1e+02 Score=35.68 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=14.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 011982 170 GGLEMNIANLQSEKEFWLQKEA-ALEQKIS 198 (473)
Q Consensus 170 ~~le~rl~~LK~ERD~wLqkEi-~Le~~I~ 198 (473)
..++.+...|+++++.++.+.. .++.-+.
T Consensus 546 ~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~ 575 (771)
T TIGR01069 546 KELEQEMEELKERERNKKLELEKEAQEALK 575 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666655553 3333333
No 354
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.07 E-value=23 Score=28.20 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 96 RNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQND 142 (473)
Q Consensus 96 E~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~ 142 (473)
+..+..|.-+++..+..+.+|+.-+....+.+..++..+..|..++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555544444444444444443
No 355
>PF15456 Uds1: Up-regulated During Septation
Probab=72.82 E-value=70 Score=28.58 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLY-----------KEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~-----------~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe 156 (473)
++.++..|...+..+..+++ ++.++.++...+..+ .......+..+......++.|..++..++.++.
T Consensus 27 LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 27 LKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67777778888888888877 888888877777766 234556667777777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 011982 157 QLRNQNDLHIQ 167 (473)
Q Consensus 157 eLe~ei~~L~~ 167 (473)
.++..+=++.+
T Consensus 106 ~~~~rLLeH~A 116 (124)
T PF15456_consen 106 EVRQRLLEHTA 116 (124)
T ss_pred HHHHHHHHHHH
Confidence 77666655544
No 356
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=72.80 E-value=1.1e+02 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAAL 207 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L 207 (473)
-.....-|+.+. ....+|...++++...
T Consensus 175 inl~F~rlK~ele~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 175 INLFFLRLKGELEQTKDKLEEAQNELSAW 203 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 333344444444 4555555555555543
No 357
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.67 E-value=34 Score=28.91 Aligned_cols=50 Identities=30% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 011982 270 LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 326 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~ne 326 (473)
|......|..-+.......... |-.++..+..-...+.++|..|..++.|
T Consensus 51 L~~LE~~Le~aL~~VR~rK~~~-------l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 51 LQQLEQQLESALKRVRSRKDQL-------LMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444444444444444 7778888888888888888888887654
No 358
>PRK02119 hypothetical protein; Provisional
Probab=72.62 E-value=32 Score=27.77 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
++..+..|.-+++..+..+.+|+.-+....+.+..+...+..|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 359
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=72.61 E-value=1.4e+02 Score=32.09 Aligned_cols=27 Identities=4% Similarity=-0.052 Sum_probs=13.1
Q ss_pred CcccccCCccccCcchh----HHHHHHhhcc
Q 011982 436 VAAVPLTDAPLIGAPFR----LVSFVAKYVS 462 (473)
Q Consensus 436 ~~~vPl~~~~~~~~~f~----~~~~~~~~~~ 462 (473)
+..+||.---.|.+++. +++|.+++|+
T Consensus 356 sgg~~~f~~tkfD~amvafLd~L~qf~~e~~ 386 (447)
T KOG2751|consen 356 SGGLKFFWSTKFDKAMVAFLDCLKQFADELE 386 (447)
T ss_pred CCCceeeeccccCHHHHHHHHHHHHHHHHHH
Confidence 34455544444444432 4555555554
No 360
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.15 E-value=99 Score=30.01 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 166 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~ 166 (473)
.|+..++....|...-...+-.|.-.++++... ....+..+..++.........+.....++.....+..-+.
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~-------l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAE-------LRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 344444444444444444444444433333333 3333344444444444444444444444444444444444
Q ss_pred HHhhchHHHHHHHHH
Q 011982 167 QREGGLEMNIANLQS 181 (473)
Q Consensus 167 ~kl~~le~rl~~LK~ 181 (473)
.+++.++..+..|+.
T Consensus 87 ekl~~le~El~~Lr~ 101 (202)
T PF06818_consen 87 EKLGQLEAELAELRE 101 (202)
T ss_pred hhhhhhHHHHHHHHH
Confidence 444444444444433
No 361
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.80 E-value=94 Score=29.62 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 011982 155 IKQLRNQNDLHIQREGGLEMNIANL-QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS-WTQME 232 (473)
Q Consensus 155 LeeLe~ei~~L~~kl~~le~rl~~L-K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~-L~~ei 232 (473)
|..+..++..+......+-...-.| -...-..-.....+...|..++.++..|..++..+...++.++..... .....
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHhchHHHHHHHHHHHHHH
Q 011982 233 SVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 233 ~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
..+.+++.-+......++.++..+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 362
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.74 E-value=1.4e+02 Score=31.45 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=36.3
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.+..|..+.-+...|+.+++.....-|.|..|...|+..+..|+.+++-.....
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNe 296 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNE 296 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccc
Confidence 334556666666667777777777777777777777777777777766555443
No 363
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.74 E-value=91 Score=29.41 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEA 191 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi 191 (473)
.+...+.|+++|+.||-.-+
T Consensus 91 ~~~~~~~fraQRN~YIsGf~ 110 (192)
T PF05529_consen 91 DQVLAKKFRAQRNMYISGFA 110 (192)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33457778999999986554
No 364
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=71.71 E-value=1.1e+02 Score=30.46 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHH
Q 011982 180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 244 (473)
Q Consensus 180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~ 244 (473)
--+...|-+--|+....|..+-.+...++..-..|..+++-+..+..+|+.-+..++..+..+..
T Consensus 98 ~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g 162 (254)
T KOG2196|consen 98 ATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSG 162 (254)
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44667898888888888887777777776666666666666666666666666666666666554
No 365
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.64 E-value=1.2e+02 Score=30.82 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 76 AERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI 155 (473)
Q Consensus 76 ~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL 155 (473)
+||+.+.-.....+.+-.++..++..+..+.+.|.-+++-+.+..+++...+..---+...-.++--.|......+-..+
T Consensus 83 terqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~ 162 (389)
T KOG4687|consen 83 TERQDLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAH 162 (389)
T ss_pred chhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHH
Confidence 35666665666666677778888888888888888888777777777766665544444333333334555555555555
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 156 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL---------RDESAALNMKRASLEERLKLLEADKD 226 (473)
Q Consensus 156 eeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l---------~~el~~L~~ei~~Leeeie~Le~EI~ 226 (473)
+.|+..-..|...+..+-.....|--|||.+..+-..|..++.-. -..++.+-.+-.-|...+.--+++++
T Consensus 163 EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeElE 242 (389)
T KOG4687|consen 163 EGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEELE 242 (389)
T ss_pred HHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHH
Confidence 566666555555554444455556677888777766665555432 22445555555555555555555555
Q ss_pred HHHHHhHhHH
Q 011982 227 SWTQMESVSK 236 (473)
Q Consensus 227 ~L~~ei~~~~ 236 (473)
..+..+..++
T Consensus 243 liK~siaKYK 252 (389)
T KOG4687|consen 243 LIKMSIAKYK 252 (389)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 366
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.53 E-value=68 Score=27.87 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=37.3
Q ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 234 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 234 ~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.+..-|..-......+......-...+.....+...|...+..|..++...+..|...
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555566666777777777777777777777777777666
No 367
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=71.49 E-value=40 Score=27.19 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 327 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL 327 (473)
.+..|...+--+.-.|+..+......|+.+ |= |-.+++-||.+++.|-.++...+..|
T Consensus 12 ~lQnEWDa~mLE~f~LRk~l~~~rqELs~a-------LY-q~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 12 TLQNEWDALMLENFTLRKQLDQTRQELSHA-------LY-QHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 344455555555556666666666667777 65 77888999999999999888876655
No 368
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.03 E-value=70 Score=27.80 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 83 QREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 162 (473)
Q Consensus 83 q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei 162 (473)
.....+......+......+..+...|...-..|......+..=+...+.....-......-.........+|..+..++
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555544444444444444445555555666666
Q ss_pred HHHHHHhhchHHHHHHH
Q 011982 163 DLHIQREGGLEMNIANL 179 (473)
Q Consensus 163 ~~L~~kl~~le~rl~~L 179 (473)
..+.+....++..+..+
T Consensus 91 ~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555554444443
No 369
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=70.90 E-value=15 Score=38.69 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 248 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 248 ~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
++...+..+.+....+-.....+...+..+...+..++....+.
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33333333333333333333333334444444444444444443
No 370
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=70.57 E-value=1.6e+02 Score=31.76 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982 108 TLEGTVQQLQNECDLYKEKVATLEETIQ-----QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 108 ~LE~kikeL~eei~~~~qk~~~LE~eLk-----eLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L 179 (473)
.+...+..+..+++.++.=+..++.+.+ .+..+.+.....+..+..+++.+.++...+-..+.+++.+..++
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554333 23333333333444555555555555555555555444444444
No 371
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.49 E-value=1.7e+02 Score=32.08 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 147 KEATLEETIKQLRNQNDLH 165 (473)
Q Consensus 147 ke~~le~eLeeLe~ei~~L 165 (473)
++++++.++.+|...+-.+
T Consensus 377 KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRV 395 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 372
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.40 E-value=50 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 185 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 185 ~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
..++....+..++...+.....+...+.+.+.....|..+|..|+.++.
T Consensus 8 ~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555555555555555555555555555544443
No 373
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=70.31 E-value=1.1e+02 Score=29.65 Aligned_cols=174 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 131 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE---GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 207 (473)
Q Consensus 131 E~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl---~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L 207 (473)
...+-..-..+...+.........|..|+.....++.+. + ....+.....--.+-..+......+...
T Consensus 17 ~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~---------~~d~~~v~~~~~~a~~nv~~R~k~l~~E 87 (204)
T PF10368_consen 17 EEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLG---------KDDNDEVKKLSDEALKNVDEREKELKKE 87 (204)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G----------SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
...+.....++..+...|..+... .....+..+...+...-..+..+.+.++....-+..|-..+..-...++.+...
T Consensus 88 k~ai~~a~~e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~k 165 (204)
T PF10368_consen 88 KEAIEKAKEEFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEK 165 (204)
T ss_dssp HHHHHHHHHHHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHH
Q ss_pred HHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982 288 KLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 327 (473)
Q Consensus 288 l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL 327 (473)
+... -..-..+..+...|.+...+||++
T Consensus 166 i~~i------------N~~y~~~~~~~~~fn~~t~~yN~~ 193 (204)
T PF10368_consen 166 IKAI------------NQSYKEVNKQKEKFNEYTKKYNEE 193 (204)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
No 374
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.25 E-value=26 Score=30.48 Aligned_cols=50 Identities=28% Similarity=0.390 Sum_probs=23.1
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 237 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 237 e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
+.+..++..+..+..++.+|......|..|...|+-+-+.|+..|.....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444433
No 375
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.03 E-value=43 Score=36.46 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=48.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHH
Q 011982 235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 314 (473)
Q Consensus 235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~ 314 (473)
..+.|..+-.++.+++.++..+..+-+.|..|..+|+...++....++.+-...... +..+. +.|.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~-------~~~~~-------~ql~ 122 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQE-------LTKEI-------EQLK 122 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHH-------HHHHH-------HHHH
Confidence 345666666666666666666666666666666666666665555555554443333 34333 3444
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 011982 315 TENIELVEKVNDLSVKLD 332 (473)
Q Consensus 315 ~Ey~~L~~k~neL~~~~~ 332 (473)
.+-+.+...+..|..||+
T Consensus 123 ~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 123 SERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555556666665554
No 376
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=83 Score=28.02 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 81 LLQREAILEETVKHLRNERESHIQKEATLE---------GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATL 151 (473)
Q Consensus 81 ~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE---------~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~l 151 (473)
+.+.-+.+-..+.+++..++.....+..++ ..+=.+-=.. +....+..|++++..|+.+|...+.++..+
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555666666655555544444 1111111111 334445556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 011982 152 EETIKQLRNQNDLHI 166 (473)
Q Consensus 152 e~eLeeLe~ei~~L~ 166 (473)
..+|++++..+....
T Consensus 97 ~e~l~eLq~~i~~~l 111 (119)
T COG1382 97 QERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666655543
No 377
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=2e+02 Score=32.18 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 73 LAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 73 ~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
+.+.=++.+.+.-.-+.+. -+.......+.+..-+..|...++...+.++.++++++.+++. ...+.
T Consensus 556 ~~~E~~~lL~~a~~vfrEq------Yi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~-------a~~La 622 (741)
T KOG4460|consen 556 PPEECLQLLSRATQVFREQ------YILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREM-------AERLA 622 (741)
T ss_pred CcHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3344455555554444332 3333444445555556666666555555555555444444333 33444
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011982 153 ETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~kl~ 170 (473)
.++++.....+.|..++.
T Consensus 623 ~R~eea~e~qe~L~~~~~ 640 (741)
T KOG4460|consen 623 DRYEEAKEKQEDLMNRMK 640 (741)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444444444
No 378
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=69.00 E-value=80 Score=30.47 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
+..++..++.+.+++.-|+.-+..-+.+++.|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555544444444
No 379
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.81 E-value=2.2e+02 Score=32.58 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE-------KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 161 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~q-------k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e 161 (473)
...+.++...+..+.+.++..+-++..|-..+..... ....|...+..|...+.....+..+-..++.++..+
T Consensus 53 ~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 53 KRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777666666554432111 111333344444444444444444444444444444
Q ss_pred HHHHHHH----------------------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 011982 162 NDLHIQR----------------------EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD----------------- 202 (473)
Q Consensus 162 i~~L~~k----------------------l~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~----------------- 202 (473)
++.+-.. +..++.++..|+.++..=+++-..+...|..+-.
T Consensus 133 ie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL 212 (660)
T KOG4302|consen 133 IEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSL 212 (660)
T ss_pred HHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhh
Confidence 4444444 2334555555555555555554444444443322
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982 203 --------------ESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245 (473)
Q Consensus 203 --------------el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e 245 (473)
.++.|..-+..+.++..+.-..+..+..++..++..|....++
T Consensus 213 ~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee 269 (660)
T KOG4302|consen 213 VDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEE 269 (660)
T ss_pred hhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 2334555555555555555555666666666666555544433
No 380
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=68.55 E-value=1.8e+02 Score=31.58 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982 93 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 172 (473)
Q Consensus 93 ~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l 172 (473)
+..+.-+...+.+...|+.-..+-..+|..+.+-+.....+-.--.-.....+.+...++.=+.-.-..-+-+..+..++
T Consensus 101 KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl 180 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSL 180 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982 173 EMNIANLQSEKEFWLQKEA-ALEQKISQLRDESA---AL---NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~---~L---~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e 245 (473)
...-.-|+..++ =.-++ ..+-++..+..++. .. -.+.+-|-.+|..|..++............--..|=..
T Consensus 181 ~~e~KlLk~~~e--n~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~ 258 (488)
T PF06548_consen 181 MHEHKLLKEKYE--NHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQR 258 (488)
T ss_pred hhHhhhhhhhcc--CchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhh
Q ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh------chhchHHHHHHhhhh
Q 011982 246 ITQLRM---------QVVELEESRNNLLQENRQLKEN-VSSLRSQLSSDESKKLQHATS------EQKDFSTQIEAAGAL 309 (473)
Q Consensus 246 ~~~Lk~---------q~~eL~deRK~LwrEe~kL~~~-i~~L~~eL~~ae~~l~~ae~~------~~~dMe~ql~~~~~~ 309 (473)
.-.+.. -...--++=+.-|.|-.+=|-. -+.|+.+|.....-...++.- --++|+..++.+=-=
T Consensus 259 s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~G 338 (488)
T PF06548_consen 259 SYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEG 338 (488)
T ss_pred hhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccc
Q 011982 310 IDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSD 355 (473)
Q Consensus 310 ~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v 355 (473)
-...++-|++|.+|||.|.. +++..--|+.-|...+.+-|+.|.
T Consensus 339 haR~lEqYadLqEk~~~Ll~--~Hr~i~egI~dVKkaAakAg~kG~ 382 (488)
T PF06548_consen 339 HARMLEQYADLQEKHNDLLA--RHRRIMEGIEDVKKAAAKAGVKGA 382 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccc
No 381
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=68.50 E-value=68 Score=26.68 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
...+......+..+..++..+.......+++...+......-........
T Consensus 58 ~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~ 107 (123)
T PF02050_consen 58 EQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEE 107 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444555544444444444444433
No 382
>PRK04325 hypothetical protein; Provisional
Probab=68.41 E-value=44 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 99 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 99 ~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
+..|.-++++.+.++.+|+.-+....+.+..+...+..|
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 383
>PRK00295 hypothetical protein; Provisional
Probab=67.64 E-value=49 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 99 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 99 ~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
+..|.-+++..+..+.+|+..+....+.+..+...+..|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 384
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.52 E-value=34 Score=29.76 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
-+.+..++.+|..+-.++..|+.++.+|.++-..|..|...|+..+..+..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666677777777788888888888888888888888887766
No 385
>PRK00846 hypothetical protein; Provisional
Probab=67.44 E-value=39 Score=27.77 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEAD 224 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~E 224 (473)
.|+..+.=....+..|...+......|..+...
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 386
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.38 E-value=38 Score=27.46 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 261 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK 261 (473)
.++..|..|+..+.+..+.|+++...+....-.+..++.++.-|.++.+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444444444444433
No 387
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.24 E-value=1.6e+02 Score=30.54 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=43.1
Q ss_pred hchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCcccccccccccc
Q 011982 297 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSD 364 (473)
Q Consensus 297 ~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~ 364 (473)
+.+..+|..+...+..|-.|...=.+.+..|..++...-...=|+|. +-+++||+..-+.
T Consensus 273 ~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa--------~isY~G~f~~~~R 332 (344)
T PF12777_consen 273 EETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA--------FISYLGPFTPEYR 332 (344)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH--------HHHCCCCTSHHHH
T ss_pred HHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH--------HHHHcCCCCHHHH
Confidence 33566888888888888888888888888888777777666666554 3456887765443
No 388
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=67.10 E-value=68 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 252 QVVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
+-.+|.-+..+|.++...+...+..+
T Consensus 44 eNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 44 ENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433333333
No 389
>PRK00736 hypothetical protein; Provisional
Probab=67.09 E-value=46 Score=26.48 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 99 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 139 (473)
Q Consensus 99 ~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~ 139 (473)
+..|.-+++..+..+.+|+.-+....+.+..+..++..|..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 390
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.96 E-value=1.2e+02 Score=28.83 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982 189 KEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADK--DSWTQMESVSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 189 kEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI--~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
.+. .+..+|..+...+.++.......+.+|..|.+-+ .++..++..+.....+....+..+++-++...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 444 6666666666666666666666666666666543 34555555555555555555555555555443
No 391
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=66.90 E-value=37 Score=37.72 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 258 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d 258 (473)
+..++.....|.++|+++...|++++..+..-+.++..++.++.+.+.++.+|.+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3334444444444444455555555554444445555555555555555555543
No 392
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.87 E-value=2.5e+02 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=17.7
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
+|+-|++||++- +..++ .-.+|.+|+.+|...
T Consensus 696 kieal~~qik~~---~~~a~-~~~~lkek~e~l~~e 727 (762)
T PLN03229 696 KIEALEQQIKQK---IAEAL-NSSELKEKFEELEAE 727 (762)
T ss_pred HHHHHHHHHHHH---HHHHh-ccHhHHHHHHHHHHH
Confidence 555666555432 22221 145777888888763
No 393
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=66.48 E-value=1.9e+02 Score=31.18 Aligned_cols=27 Identities=0% Similarity=0.126 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 265 QENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 265 rEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.+...+...+..+..-+...+-.+...
T Consensus 253 kdi~~a~~~L~~m~~~i~~~kp~WkKi 279 (424)
T PF03915_consen 253 KDISRASKELKKMKEYIKTEKPIWKKI 279 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 333333333333333333333333333
No 394
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=66.46 E-value=2e+02 Score=31.29 Aligned_cols=312 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 79 QHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL 158 (473)
Q Consensus 79 ~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeL 158 (473)
+.+-..++.+.......-..+..+..++-.+|..+..+-+.+.-..+....-.+++.+++...+... ...-.++|...
T Consensus 213 ~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s 290 (554)
T KOG4677|consen 213 DKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALS 290 (554)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHH
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 011982 159 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET 238 (473)
Q Consensus 159 e~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~ 238 (473)
.....-+.+--. .....+.|....--..-=..+++..+..++..|..++.+++.++..+++...............
T Consensus 291 ~~~e~~i~qs~~----kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~ 366 (554)
T KOG4677|consen 291 HYREHLIIQSPD----KSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKAS 366 (554)
T ss_pred HHHHhhccCCCC----cchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhh
Q ss_pred HhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhchhchHHHHHHhhhhHHHHHHH
Q 011982 239 IAGLSVD-ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK-LQHATSEQKDFSTQIEAAGALIDKLITE 316 (473)
Q Consensus 239 L~~l~~e-~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l-~~ae~~~~~dMe~ql~~~~~~~~~l~~E 316 (473)
+..+-.. ...+..-+.+-+-.-..+.|...++.+.+-.-..+|.+.-..+ .+|-......++.-.-+++-..-...+-
T Consensus 367 ~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~ 446 (554)
T KOG4677|consen 367 ILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIG 446 (554)
T ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccc-cccccccccCCccccc-----cccccccccccccCCccee
Q 011982 317 NIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSD-TEPMSESSDNMSSLNN-----RLETQGVVAVKEDRNGING 390 (473)
Q Consensus 317 y~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v-~g~l~el~~~~~v~~~-----~~~t~~e~~~~~agns~vv 390 (473)
...++.-.+-|-.+|..+.....+-.-.-+.-.++-.+- +.-++.|+.+ . ++ +|.+.|.
T Consensus 447 le~v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~v~~l~~d--~-~~~~q~r~a~s~VD------------ 511 (554)
T KOG4677|consen 447 LERVVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDVVIDLYRD--L-KDRQQLRAARSKVD------------ 511 (554)
T ss_pred HHHHHHHHhhhhhhHHHHHHHhccccccceeeccCCCcccccccchHhhh--h-hhhHHHHHHHhhcc------------
Q ss_pred ecCCCchhhhcccccccCCceeee
Q 011982 391 VHADPPPLVLSSSEAEYSGEIVQI 414 (473)
Q Consensus 391 v~d~~a~~~~~~~~~~~~gritf~ 414 (473)
.+|..+.-+|-.-.+.||.|+
T Consensus 512 ---~~s~~l~~~lr~~psArif~~ 532 (554)
T KOG4677|consen 512 ---KGSAELEKILRLLPSARIFWK 532 (554)
T ss_pred ---hhhHHHHHHHhcCchhHHHHH
No 395
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=66.23 E-value=2.7e+02 Score=32.77 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 78 RQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLY 123 (473)
Q Consensus 78 ~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~ 123 (473)
-..++|.-+.+...+.+++.-+..+..+.+..+-.+..+..+.+..
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~ 597 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEA 597 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445666666666666666666666666666665555555554443
No 396
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.06 E-value=2.6e+02 Score=32.44 Aligned_cols=106 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.++...|.++...++.|+. ..+-+.-........+.....+.-+.+.-|.|-..+.+.+......+.++.+-....
T Consensus 670 ~Sa~rqIael~~~lE~L~~----t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~ 745 (1104)
T COG4913 670 PSAQRQIAELQARLERLTH----TQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQG 745 (1104)
T ss_pred hhHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444444444444444433 223333334444555555555555555556665555555555555555444433222
Q ss_pred hh---------------------h-------chhchHHHHHHhhhhHHHHHHHHHHHH
Q 011982 292 AT---------------------S-------EQKDFSTQIEAAGALIDKLITENIELV 321 (473)
Q Consensus 292 e~---------------------~-------~~~dMe~ql~~~~~~~~~l~~Ey~~L~ 321 (473)
-+ + --.+|+.+|.+..+.+..+..+..--|
T Consensus 746 ~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m 803 (1104)
T COG4913 746 MTGALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRM 803 (1104)
T ss_pred hhHHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 00 0 234566677777777776666654443
No 397
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.06 E-value=74 Score=26.21 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=6.2
Q ss_pred HHHHhchHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQ 252 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q 252 (473)
...+-.|+.....++.+
T Consensus 45 r~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 45 RQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 398
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.97 E-value=2.2e+02 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQ 115 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kike 115 (473)
.++.+..+-........+++.|+.+-..
T Consensus 300 stes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 300 STESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444
No 399
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=65.90 E-value=42 Score=30.40 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
......+......+..+...+..|+..-......+......-..+...+-.+-.....+.-.-..|..++..|+..+..|
T Consensus 40 ~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l 119 (141)
T PF13874_consen 40 EAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEAL 119 (141)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33333444444444444444444433333333333344444444444444444444444444445555555555555555
Q ss_pred HHHHHH
Q 011982 278 RSQLSS 283 (473)
Q Consensus 278 ~~eL~~ 283 (473)
..++..
T Consensus 120 ~~~l~~ 125 (141)
T PF13874_consen 120 EAQLNA 125 (141)
T ss_dssp ------
T ss_pred HHHHcC
Confidence 555443
No 400
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.85 E-value=2.6e+02 Score=32.44 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
..=+.+++.....+-+...++-++......+..++-.++.-+.|-.-|.-.+
T Consensus 480 ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itl 531 (861)
T PF15254_consen 480 EKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITL 531 (861)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHH
Confidence 3333444444445555555555555555555555555555555544444433
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.73 E-value=1e+02 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 251 MQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 251 ~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
.++.++++.......+...+...+..|.
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 402
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.59 E-value=1.9e+02 Score=30.85 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 263 LLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.-.|.+-|..+++.|+++|+.+.+....+
T Consensus 517 KEsEiQYLKqEissLkDELQtalrDKkya 545 (593)
T KOG4807|consen 517 KESEIQYLKQEISSLKDELQTALRDKKYA 545 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34578889999999999999999998777
No 403
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.42 E-value=2e+02 Score=30.85 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 168 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k 168 (473)
...+..+.+++..+......++..+..|+.++... ...+...+.+-+-. .+.-++.+.+-++-...++..|++.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e---~~~~~~~LqEEr~R---~erLEeqlNd~~elHq~Ei~~LKqe 284 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQRE---YQFILEALQEERYR---YERLEEQLNDLTELHQNEIYNLKQE 284 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666666666543311 11222222111111 1111222333344456777777777
Q ss_pred hhchHHHHHHH
Q 011982 169 EGGLEMNIANL 179 (473)
Q Consensus 169 l~~le~rl~~L 179 (473)
++.+++++.-.
T Consensus 285 La~~EEK~~Yq 295 (395)
T PF10267_consen 285 LASMEEKMAYQ 295 (395)
T ss_pred HHhHHHHHHHH
Confidence 77777776544
No 404
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=65.11 E-value=1.1e+02 Score=28.03 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
.-++.++++|...+..+.....+|...+..+...++....
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555554443
No 405
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=64.89 E-value=2.2e+02 Score=31.24 Aligned_cols=9 Identities=11% Similarity=-0.093 Sum_probs=4.1
Q ss_pred CCcceeecC
Q 011982 385 RNGINGVHA 393 (473)
Q Consensus 385 gns~vvv~d 393 (473)
|+.||||..
T Consensus 249 ~~k~ivIDS 257 (475)
T PRK10361 249 QGKDVVIDA 257 (475)
T ss_pred CCCCceEec
Confidence 344555533
No 406
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=64.35 E-value=1.7e+02 Score=29.70 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 011982 133 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 185 (473)
Q Consensus 133 eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~ 185 (473)
+.......+..+..+++.....+...++++..+..+...+..|+..++.++-.
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555444443
No 407
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=64.33 E-value=1.2e+02 Score=28.04 Aligned_cols=93 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 191 (473)
Q Consensus 112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi 191 (473)
+-....+.+......+..-..+|..++.++. .--.....++..+++.|+..-.++.-+......-..|+..||....
T Consensus 46 kKmeVrekVq~~LgrveEetkrLa~ireeLE---~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 46 KKMEVREKVQAQLGRVEEETKRLAEIREELE---VLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555443 2233445555555555555555555444444455777888887764
Q ss_pred HHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAAL 207 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L 207 (473)
.....-..+-..+..|
T Consensus 123 EknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444333333333
No 408
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=64.20 E-value=73 Score=25.92 Aligned_cols=28 Identities=32% Similarity=0.230 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 011982 152 EETIKQLRNQNDLHIQREGGLEMNIANL 179 (473)
Q Consensus 152 e~eLeeLe~ei~~L~~kl~~le~rl~~L 179 (473)
+..|..|+++.=.|+-++--++.++...
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 4445555555555555555555555433
No 409
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.01 E-value=1.6e+02 Score=29.23 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--HHHHHhchHHHHHHH--------
Q 011982 184 EFWLQKEA----ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV--SKETIAGLSVDITQL-------- 249 (473)
Q Consensus 184 D~wLqkEi----~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~--~~e~L~~l~~e~~~L-------- 249 (473)
|.|..... .|+..+..+...+..+-.....|-.-...+-..+..|-....+ +..-++.+.+.-..+
T Consensus 21 D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa 100 (234)
T cd07665 21 DVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQA 100 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----chhchHHHHHHhhhhHHHHHH
Q 011982 250 ----------RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS----EQKDFSTQIEAAGALIDKLIT 315 (473)
Q Consensus 250 ----------k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~----~~~dMe~ql~~~~~~~~~l~~ 315 (473)
...|-.+...-|....++.++|...+.+..++.+-+..+...... ++..+...+..+....+.+..
T Consensus 101 ~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~ 180 (234)
T cd07665 101 NNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER 180 (234)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhh
Q 011982 316 ENIELVEKVND 326 (473)
Q Consensus 316 Ey~~L~~k~ne 326 (473)
+|.+....+..
T Consensus 181 ~fe~is~~ik~ 191 (234)
T cd07665 181 DFERISATVRK 191 (234)
T ss_pred HHHHHHHHHHH
No 410
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=63.39 E-value=2.1e+02 Score=30.37 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHH---HHH-HHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVV---ELE-ESRNNLLQEN 267 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~---eL~-deRK~LwrEe 267 (473)
.+...|.........|..++..+..+|...+..|..|+..+..-..-|+--+..+.. +..+= -.. .---.|..|.
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~-R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN-RTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-HhcCCchHHHHhhHHHHHHHHH
Confidence 455556666666666666666666666666666666665544443333322222211 11111 111 1223566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 268 RQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 268 ~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
..|...+..|...|..++..+...
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~L 350 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQKL 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766555
No 411
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=63.13 E-value=1.6e+02 Score=29.08 Aligned_cols=180 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 011982 134 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD-----ESAALN 208 (473)
Q Consensus 134 LkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~-----el~~L~ 208 (473)
++.+-..+.....+..+-.+-+.+....+..|...+..+......+-..|...-..-...-..+..|-. .+...-
T Consensus 3 ~~~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l 82 (234)
T cd07664 3 VNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRAL 82 (234)
T ss_pred hhHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 209 MKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 209 ~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
..+.++...|..+......... -.+......|-.+...-|.+..++.++|...+.+..+|.+.+..+
T Consensus 83 ~~laev~~ki~~~~~~qa~~d~-------------~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~ 149 (234)
T cd07664 83 SQLAEVEEKIDQLHQDQAFADF-------------YLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAE 149 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhh----chhchHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 011982 289 LQHATS----EQKDFSTQIEAAGALIDKLITENIELVEKVND 326 (473)
Q Consensus 289 ~~ae~~----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~ne 326 (473)
..+... ++..+...+..+......+..+|....+.+..
T Consensus 150 ~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~ 191 (234)
T cd07664 150 AKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRK 191 (234)
T ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=62.71 E-value=69 Score=27.74 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 101 SHIQKEATLEGTVQ--QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 164 (473)
Q Consensus 101 ~l~q~~a~LE~kik--eL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~ 164 (473)
...+++..+|-++. ..-.++..+.+.+...-++|+.|+.++...-..+..+...|....+.++.
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555 44556666666666666667777666665555555555555555555444
No 413
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=62.38 E-value=2.8e+02 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 011982 151 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 193 (473)
Q Consensus 151 le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~L 193 (473)
+..++..++.++.+....+..++..+..|..-|+.|+-.|++.
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~ 425 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQ 425 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence 3334444444444455555555556666667789999888643
No 414
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.36 E-value=1.7e+02 Score=29.14 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD-ITQLRMQVVELEESRNNLLQENRQL 270 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e-~~~Lk~q~~eL~deRK~LwrEe~kL 270 (473)
.++.++..+...+.....+...+..++..++..++.... ..+..+..++.. ..+++..+...-+..-.+..+...+
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~---~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~ 236 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANN---ALKADWERWKQNMQTDLRSAFTDMAENNISYYEECLAT 236 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666666666666665544 244555555533 5666666666666666666666666
Q ss_pred HHH
Q 011982 271 KEN 273 (473)
Q Consensus 271 ~~~ 273 (473)
|..
T Consensus 237 We~ 239 (243)
T cd07666 237 WES 239 (243)
T ss_pred HHH
Confidence 654
No 415
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=62.30 E-value=2.7e+02 Score=31.32 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 107 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 107 a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
.+|=.+..-|+-=...+..++..|..+...|+.++.+.++...+++++|.+++.++..++++..
T Consensus 311 sqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 311 SQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444445555666666666667777766666666667777776666666666554
No 416
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=62.22 E-value=2.6e+02 Score=31.08 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=22.0
Q ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 234 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 234 ~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
.+-..|..+...+..|...+......- ..-+....||.-+..|..-|...
T Consensus 375 ~~~~~l~~~~~~~~~le~~~~~~~~~~-~~~~~~~~l~~a~~~l~~~l~~~ 424 (582)
T PF09731_consen 375 GRLAKLAELNSRLKALEEALDARSEAE-DENRRAQQLWLAVDALKSALDSG 424 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 444445555554444444333322211 12333445555555555555444
No 417
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=61.58 E-value=62 Score=29.27 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
.+-..+..++..--.+..+-+.|...++.+..++..
T Consensus 90 ~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 90 RVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 333333333333334444444444444444444443
No 418
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.25 E-value=1.2e+02 Score=27.14 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=19.7
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 239 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 239 L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
|..+...+.+..+-.....++.-.+.+....+...+..+..-+..++.++
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444444333
No 419
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.47 E-value=2.7e+02 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 72 NLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNE 119 (473)
Q Consensus 72 ~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~ee 119 (473)
|-.|+-+-...|+|..+.......+.+.+.+..++...+......-..
T Consensus 179 ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~s~~e~l~k 226 (613)
T KOG0992|consen 179 IELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEESRLESLGK 226 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555667777777777777777777766666555444333333
No 420
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.37 E-value=1.8e+02 Score=28.75 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=9.6
Q ss_pred cccCcchhHHHHHHhhccc
Q 011982 445 PLIGAPFRLVSFVAKYVSG 463 (473)
Q Consensus 445 ~~~~~~f~~~~~~~~~~~~ 463 (473)
..|.+.--+-+|.+.--||
T Consensus 215 s~vr~tnnFs~FL~n~Rsg 233 (246)
T KOG4657|consen 215 SAVRPTNNFSSFLENKRSG 233 (246)
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 4444444555666554444
No 421
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=60.24 E-value=2.5e+02 Score=30.41 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011982 274 VSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 274 i~~L~~eL~~ae~~l~~a 291 (473)
.+.|..+.+-|+..+..+
T Consensus 353 Ye~L~le~efAe~~y~sA 370 (434)
T PRK15178 353 FEDLRLQSEIAKARWESA 370 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455554444
No 422
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.06 E-value=53 Score=28.81 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
.+.+..++..+..+..++.+|......|..|...|+-+-+.|+..+..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 423
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=60.03 E-value=2.7e+02 Score=32.00 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHH---HHHHHH
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM---QVVELE 257 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~---q~~eL~ 257 (473)
..|...+..=..|-..+..+...+..++.. +..+|...-.+++.+-++|..|..++..+.. .-+.|.
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~----------vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLl 196 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSN----------INSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLL 196 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhH
Confidence 344444444444444444444444443322 2223333333333333444444444333221 245677
Q ss_pred HHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKE 272 (473)
Q Consensus 258 deRK~LwrEe~kL~~ 272 (473)
|+|..|.+|..++-.
T Consensus 197 DqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 197 DARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHHhhcC
Confidence 777777777665543
No 424
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=59.91 E-value=1.9e+02 Score=28.87 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 247 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL 281 (473)
...+....+|+++...+..+...|++++.+|+.+=
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 425
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=59.59 E-value=3.2e+02 Score=31.37 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=17.5
Q ss_pred HHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCC
Q 011982 318 IELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL 352 (473)
Q Consensus 318 ~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l 352 (473)
..|.+|++|-+-+ ..+-+||-|.+.....+..
T Consensus 432 ~sL~~RlSyAvrr---v~tiqGL~Ark~Alaqlrq 463 (739)
T PF07111_consen 432 PSLSNRLSYAVRR---VHTIQGLMARKLALAQLRQ 463 (739)
T ss_pred HHHhHHHHHHhcc---cchhHHHHHHHHHHHHHHh
Confidence 3455566665543 3456777766555444443
No 426
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=59.48 E-value=1.2e+02 Score=26.59 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
++++-.......|+.+..++..++..+..++.+....+..+-.+
T Consensus 66 el~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 66 ELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555444444444433
No 427
>PF13945 NST1: Salt tolerance down-regulator
Probab=59.30 E-value=23 Score=34.06 Aligned_cols=16 Identities=6% Similarity=-0.128 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 011982 74 AEAERQHLLQREAILE 89 (473)
Q Consensus 74 ~~~~~~~~~q~e~~~~ 89 (473)
.|..+..|+.+...-.
T Consensus 104 re~LkeFW~SL~eeER 119 (190)
T PF13945_consen 104 REKLKEFWESLSEEER 119 (190)
T ss_pred HHHHHHHHHccCHHHH
Confidence 4455666766654433
No 428
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=59.17 E-value=1.4e+02 Score=27.02 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 247 TQLRMQVVELEESRNNLLQ 265 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~Lwr 265 (473)
-+...++.++..+.|.||.
T Consensus 92 ~~fe~qLE~lm~qHKdLwe 110 (134)
T PF15233_consen 92 LDFEEQLEDLMGQHKDLWE 110 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445577778888888885
No 429
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=59.10 E-value=2.9e+02 Score=31.51 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=43.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH--
Q 011982 186 WLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN-- 262 (473)
Q Consensus 186 wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~-- 262 (473)
|.+++. .++.++..+....+.+..+... ....+...+..+...+..++.++.+.......|+..+..|...|..
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV---KTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 555554 5555555555544444443322 1222333333333333334444444444444444444444422211
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 263 ---------LLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 263 ---------LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+=...-.|...++.+..-|+.|...|..+
T Consensus 420 laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~ 457 (656)
T PRK06975 420 IAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATS 457 (656)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 11122233334555555555555555444
No 430
>COG5293 Predicted ATPase [General function prediction only]
Probab=59.06 E-value=2.8e+02 Score=30.42 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASL 214 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~L 214 (473)
-++|-.+++.+| .++..+......++.+..+..+.
T Consensus 333 ~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~ 368 (591)
T COG5293 333 TEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEG 368 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998 88888887777777776665543
No 431
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.02 E-value=1.1e+02 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 251 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 251 ~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
.-...|.+....+-.+...|...+..+..++..++..+.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555444443
No 432
>PRK00106 hypothetical protein; Provisional
Probab=58.83 E-value=3e+02 Score=30.73 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 71 ANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT 150 (473)
Q Consensus 71 ~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~ 150 (473)
.|..+++.+.-........+-...+...+..+.+....-...+.+...++..-.+.+..-+..+..-+..+...+..+..
T Consensus 57 ~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~ 136 (535)
T PRK00106 57 HIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTD 136 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 151 LEETIKQLRNQNDLHIQREGGLEMNIANL--QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEER 217 (473)
Q Consensus 151 le~eLeeLe~ei~~L~~kl~~le~rl~~L--K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leee 217 (473)
....++....+++.+..++...=+++..+ .+.++.++..-. ++..+...+-.....--..-.+-...
T Consensus 137 reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~ 206 (535)
T PRK00106 137 KSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAK 206 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 433
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=58.74 E-value=1.7e+02 Score=27.90 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=9.0
Q ss_pred HHHHhhhhhhhhhhh
Q 011982 319 ELVEKVNDLSVKLDR 333 (473)
Q Consensus 319 ~L~~k~neL~~~~~~ 333 (473)
.|++|-|.|..+++.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (189)
T TIGR02132 165 QLLEKQEALAAKLKA 179 (189)
T ss_pred HHHHHHHHHHHHhhh
Confidence 456666666665544
No 434
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=58.35 E-value=93 Score=28.78 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=7.7
Q ss_pred hHHHHHHhhhhHHHH
Q 011982 299 FSTQIEAAGALIDKL 313 (473)
Q Consensus 299 Me~ql~~~~~~~~~l 313 (473)
+...|..+++.+..+
T Consensus 87 i~~al~~akakn~~a 101 (155)
T PF06810_consen 87 IKSALKGAKAKNPKA 101 (155)
T ss_pred HHHHHHHcCCCCHHH
Confidence 555555555555433
No 435
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.31 E-value=60 Score=28.44 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 229 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 229 ~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
=+.+..++.+|..+-.++..|+.++.++.++--.|.-|...|++.+..+..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455566666666777777777888888888888888888888887744
No 436
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=58.30 E-value=58 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011982 212 ASLEERLKLLEADKDSWT 229 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~ 229 (473)
.+|+.++..++.+|..+.
T Consensus 7 ~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 437
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=57.91 E-value=68 Score=26.92 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
|..+....+.......-+..+...|..+|.-|+.+++. .-++..+.-++..|+.++..++.-. -..++.-+-..++.
T Consensus 5 I~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~ 81 (86)
T PF12711_consen 5 IKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISE 81 (86)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHH
Confidence 44444444444444444555556666666666665542 2345555555666666666555444 23344444444444
Q ss_pred HHH
Q 011982 277 LRS 279 (473)
Q Consensus 277 L~~ 279 (473)
|++
T Consensus 82 L~~ 84 (86)
T PF12711_consen 82 LRD 84 (86)
T ss_pred HHh
Confidence 443
No 438
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=57.55 E-value=3.2e+02 Score=30.67 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRM 145 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~e 145 (473)
.+...+.....-...+....-..+..+......|.
T Consensus 341 ~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~ 375 (607)
T KOG0240|consen 341 LTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWR 375 (607)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333444444444444444444443
No 439
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.53 E-value=2.2e+02 Score=28.80 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011982 269 QLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 269 kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
.....+..++..+..++..+..+
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677777777788888777
No 440
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=57.39 E-value=53 Score=37.01 Aligned_cols=19 Identities=37% Similarity=0.505 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 254 VELEESRNNLLQENRQLKE 272 (473)
Q Consensus 254 ~eL~deRK~LwrEe~kL~~ 272 (473)
-++.+++..+|.+...|..
T Consensus 346 l~~v~k~~~l~~~~~~Le~ 364 (619)
T PF03999_consen 346 LELVEKWESLWEEMEELEE 364 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445777777777766644
No 441
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.35 E-value=88 Score=24.18 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 112 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 156 (473)
Q Consensus 112 kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLe 156 (473)
++.+|..++..+..++..|...+..++..+.....+-.....+|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555444444444333333443
No 442
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.18 E-value=2.9e+02 Score=30.02 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=25.0
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~ 329 (473)
-+.|.+++|=.++..+........+-..|.-.++.
T Consensus 391 slDdVD~kIleak~al~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 391 SLDDVDHKILEAKSALSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888777766666655544443
No 443
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.05 E-value=1.9e+02 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Q 011982 105 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 173 (473)
Q Consensus 105 ~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le 173 (473)
.++..|..--.|..+.....+.+..-+.....|+..+.-..++...+..+-...+.+...|..+...++
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaq 167 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQ 167 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555544444444444444444444433333
No 444
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=56.99 E-value=2e+02 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 263 LLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
|-|.+..+...+..+...+..++..+..+
T Consensus 97 Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~ 125 (207)
T PF05546_consen 97 LYRNDHENEQAEEEAKEALEEAEEKVEEA 125 (207)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.94 E-value=2e+02 Score=33.49 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=20.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 240 AGLSVDITQLRMQVVELEESRNNLLQ-ENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 240 ~~l~~e~~~Lk~q~~eL~deRK~Lwr-Ee~kL~~~i~~L~~eL~~ae~~l 288 (473)
..+......+..++..+.++++.++. -..+....+..++.+++..-+.+
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444332 23333344444444444444433
No 446
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=56.94 E-value=1.9e+02 Score=27.88 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
.+...-+|+..+..+.+.++..+.....|+.++.-...+.......-...+.+......+......+|..++.++..|..
T Consensus 103 ~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 103 VEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777777777777777777777777777777777777777777766666666666666666666666655
Q ss_pred Hh
Q 011982 168 RE 169 (473)
Q Consensus 168 kl 169 (473)
..
T Consensus 183 q~ 184 (192)
T PF11180_consen 183 QA 184 (192)
T ss_pred Hh
Confidence 43
No 447
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.76 E-value=2e+02 Score=28.13 Aligned_cols=76 Identities=7% Similarity=0.091 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h--chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT--S--EQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~--~--~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~ 328 (473)
+..++..+..++....+.+......-.++..|......+.. + +++-+..++..+...+...-.+|...++++|...
T Consensus 108 ~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~ 187 (239)
T cd07647 108 MKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDAR 187 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444333322211 1 4555666666666667777777777776666655
No 448
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=56.68 E-value=1.5e+02 Score=26.65 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 011982 310 IDKLITENIELVEKVN 325 (473)
Q Consensus 310 ~~~l~~Ey~~L~~k~n 325 (473)
+..-+.+|-..+..|-
T Consensus 126 ~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 126 VDDFLKQFKEKRKLYH 141 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666443
No 449
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=56.01 E-value=1.6e+02 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 165 (473)
Q Consensus 128 ~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L 165 (473)
......+..|+.++...+...+.....|..+++....+
T Consensus 37 ~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 37 AANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333333333333333333333
No 450
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.94 E-value=44 Score=36.42 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.0
Q ss_pred HHHHhhccc
Q 011982 455 SFVAKYVSG 463 (473)
Q Consensus 455 ~~~~~~~~~ 463 (473)
+|+|-++||
T Consensus 326 A~~AG~l~G 334 (475)
T PRK13729 326 AWGAGFVDG 334 (475)
T ss_pred HHHHHHHHH
Confidence 344444444
No 451
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=55.92 E-value=3.8 Score=44.75 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982 130 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQ----NDLHIQREGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 130 LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e----i~~L~~kl~~le~rl~~LK~ERD~wLqkE 190 (473)
.+.+|..|++.+.....++++++.+|..-+.+ +.+....+..-+.|+.+.+.|.|.-++..
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksI 438 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSI 438 (495)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHH
Confidence 56666677767666677777777666444333 33334445666667777777776666665
No 452
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.46 E-value=76 Score=31.80 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 211 RASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 268 (473)
Q Consensus 211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~ 268 (473)
+..++..+.....-+-+|..+++.+..+|..|++.+..+..++.++.+.-+.+..+..
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444445555555544444444433
No 453
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=54.91 E-value=3.3e+02 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLK 271 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~ 271 (473)
-+.|.|+|..|.+|..++-
T Consensus 195 ~ndL~DqRD~ll~eLS~~v 213 (547)
T PRK08147 195 PNDLLDQRDQLVSELNQIV 213 (547)
T ss_pred cchhHHHHHHHHHHHHhhc
Confidence 3467777777776666543
No 454
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=54.85 E-value=1.6e+02 Score=29.43 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 179 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 179 LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
....||.+-++-.+|++++......+..|+.++..|+.+=..|-+.|-.|..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3777787777777888888888888888888888887777777777777655
No 455
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.79 E-value=2.1e+02 Score=27.85 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 135 QQLQRQNDLRMQKEATL--EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 201 (473)
Q Consensus 135 keLq~eI~~~eqke~~l--e~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~ 201 (473)
..|+..|....+.+..+ ...|+.|+..+..+...+...+.++...|..++.-+......+.+++.+-
T Consensus 12 d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 12 DSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443332 34555666666666666666666666666666666666655555555443
No 456
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=54.59 E-value=2.6e+02 Score=28.81 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.1
Q ss_pred HHHhhcccc
Q 011982 456 FVAKYVSGA 464 (473)
Q Consensus 456 ~~~~~~~~~ 464 (473)
.+-+||+.+
T Consensus 276 ~~~~yi~~~ 284 (301)
T PF06120_consen 276 NREKYINNA 284 (301)
T ss_pred HHHHHHHHH
Confidence 344455443
No 457
>PRK10869 recombination and repair protein; Provisional
Probab=54.55 E-value=3.5e+02 Score=30.18 Aligned_cols=45 Identities=13% Similarity=-0.068 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 102 HIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQ 146 (473)
Q Consensus 102 l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eq 146 (473)
+.+..+.+-...+++..++............++..|+-++.+...
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555555555555555555555555544443
No 458
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=54.53 E-value=1e+02 Score=25.67 Aligned_cols=77 Identities=21% Similarity=0.132 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982 257 EESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 333 (473)
Q Consensus 257 ~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~---~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~ 333 (473)
.+.|..|-.+..+|...++.=..--..++..+....++ .-..++.+.+.+-..|..+..|-..|..++..|+-++-+
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554443333333333333322111 225688899999999999999999999999999987654
No 459
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.44 E-value=1.6e+02 Score=30.72 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASL 214 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~L 214 (473)
..|...+..+..+...+.++
T Consensus 39 ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444433333
No 460
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=54.17 E-value=3.9e+02 Score=30.72 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHhhhhhh
Q 011982 309 LIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 309 ~~~~l~~Ey~~L~~k~neL~ 328 (473)
-+.+.++.|.....+|--+.
T Consensus 310 ~l~~~i~s~~~k~~~~~~~I 329 (683)
T PF08580_consen 310 KLSKQIESKEKKKSHYFPAI 329 (683)
T ss_pred HHHHHHHHHHHHHhccHHHH
Confidence 35666666666665554444
No 461
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.93 E-value=2.4e+02 Score=27.93 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
++..++............+..++..+..|..+...+..+..........+..........-..+...+..+...+..+..
T Consensus 29 ~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~ 108 (264)
T PF06008_consen 29 LTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIE 108 (264)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555666666666666666666666666666666666666666655666666666666666555
Q ss_pred Hhh
Q 011982 168 REG 170 (473)
Q Consensus 168 kl~ 170 (473)
+..
T Consensus 109 ~~~ 111 (264)
T PF06008_consen 109 QVE 111 (264)
T ss_pred HHH
Confidence 543
No 462
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=52.82 E-value=1.8e+02 Score=26.44 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 245 DITQLRMQVVELEESRNNLLQENRQLKEN--VSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 245 e~~~Lk~q~~eL~deRK~LwrEe~kL~~~--i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
.-..+-.++-.|..++..|.|....|.-. ...|......++..+...-. +.+ ..+...-+..-..++.++=.+++
T Consensus 41 ~e~~Ll~ewf~Lv~eKn~LvrreseL~~~~~~~~Le~~~~~L~~ELr~l~~--~~d-~~KT~~d~~rE~~Ll~elv~lV~ 117 (142)
T PF12130_consen 41 EEEELLQEWFKLVNEKNALVRRESELMYMEKEQELEDRQARLEQELRELLA--KPD-WEKTEEDKQREEELLQELVELVN 117 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--ccc-cccChhhHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999887 66677777777777755500 000 01333444555667778888888
Q ss_pred hhhhhhhhhhh
Q 011982 323 KVNDLSVKLDR 333 (473)
Q Consensus 323 k~neL~~~~~~ 333 (473)
+-|+|...++.
T Consensus 118 ~Rd~LV~~le~ 128 (142)
T PF12130_consen 118 KRDALVQDLEE 128 (142)
T ss_pred hhHHHHHcchH
Confidence 88888776654
No 463
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=52.33 E-value=2.2e+02 Score=27.14 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHH
Q 011982 238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN 317 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey 317 (473)
.-.+|...++-|..+++.....-..|..+..+|......+..++..-+..+..-+. -+..-+..=...+-.|=.+.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~----~~~~y~~~eh~rll~LWr~v 150 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE----NFNQYLSSEHSRLLSLWREV 150 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcccccHHHHHHHHH
Confidence 33344444455666666666666666666666666666666666655555422100 01111111122223333455
Q ss_pred HHHHHhhhhhhhhhhhhhHHhhhhhhh
Q 011982 318 IELVEKVNDLSVKLDRQSVAAGLSSAI 344 (473)
Q Consensus 318 ~~L~~k~neL~~~~~~~~~~~Gl~s~~ 344 (473)
..|..-|.+|. -.+.+||.-++
T Consensus 151 ~~lRr~f~elr-----~~TerdL~~~r 172 (182)
T PF15035_consen 151 VALRRQFAELR-----TATERDLSDMR 172 (182)
T ss_pred HHHHHHHHHHH-----HHHHhhHHHHH
Confidence 55555555555 35667776553
No 464
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=52.16 E-value=1.8e+02 Score=26.28 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHHHHHHHHH-HHH
Q 011982 121 DLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-----QSEKEFWLQKEA-ALE 194 (473)
Q Consensus 121 ~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-----K~ERD~wLqkEi-~Le 194 (473)
+.....+.....+|..++..+.....-+..-...++...+.+.+-..++. +.| ..--..|. .+. .+.
T Consensus 11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~------~~~a~~P~~~~~~~wq-lkvr~a~ 83 (136)
T PF11570_consen 11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQD------EFFANNPPHEYGRGWQ-LKVRRAQ 83 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCTT-TTSSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc------ccccCCCccccccHHH-HHHHHHH
Confidence 33444455555556666666666555555555556555555555222211 111 22223454 333 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
.+|...+..+.....++..+.++|.....=|..
T Consensus 84 ~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~ 116 (136)
T PF11570_consen 84 KDVQNKQNKLKAAQKELNAADEELNRIQAALSQ 116 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 677777777777766666666555555444433
No 465
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=51.83 E-value=94 Score=33.48 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 251 MQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 251 ~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
..+..+...+..+..+..+|...+..|...+..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
No 466
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=51.71 E-value=2.2e+02 Score=27.11 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 86 AILEETVKHLRNERESHIQKEATLEGT 112 (473)
Q Consensus 86 ~~~~~ei~qlE~E~~~l~q~~a~LE~k 112 (473)
..|.+.|+++|-|+.........+-..
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~e 33 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRE 33 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345566666666665555544444433
No 467
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.64 E-value=1.9e+02 Score=26.31 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 196 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 272 (473)
Q Consensus 196 ~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~ 272 (473)
....++..+......+......+..+...|..+......-...-..|.............-+..-..|.+|...|++
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 468
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=51.62 E-value=1.8e+02 Score=28.32 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 94 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
+++++...+..+.+.++.+-++|...++..+.+....+....+. .+-.+..+.+++.-|......|++++.
T Consensus 182 qae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~------r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 182 QAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE------REIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=51.51 E-value=2.3e+02 Score=27.27 Aligned_cols=152 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 211 RASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQ 290 (473)
Q Consensus 211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ 290 (473)
.+.+-..+...+.+-..+-- .+..-|......+.....++..|.+.-..|..+.++|+..---|-++-++.+. +++
T Consensus 18 keel~~rLR~~E~ek~~~m~---~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-lar 93 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMV---EHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAR 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhH
Q ss_pred h---hhh--------chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh---HHhhhhhhhhhhcccCCcccc
Q 011982 291 H---ATS--------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS---VAAGLSSAIGSDAVTALTSDT 356 (473)
Q Consensus 291 a---e~~--------~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~---~~~Gl~s~~~~~~~~~l~~v~ 356 (473)
- +++ +...-..+|..+-.....++.||.+|.+ ||.=||... .+.|-.+...+.-...+...-
T Consensus 94 EWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE----lcl~LDeer~~~~~~~~~~~~s~d~~~~~~~~~ 169 (195)
T PF10226_consen 94 EWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE----LCLYLDEERPGSGRGGAGSRSSIDSQASLCNLN 169 (195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHhccccCCCCCCCCCCCChhhcccccccC
Q ss_pred ccccccccCCccccccccccccccccccCCc
Q 011982 357 EPMSESSDNMSSLNNRLETQGVVAVKEDRNG 387 (473)
Q Consensus 357 g~l~el~~~~~v~~~~~~t~~e~~~~~agns 387 (473)
|+-+.+-+ +..|.|
T Consensus 170 ~~~~~~rD-----------------~GdGSS 183 (195)
T PF10226_consen 170 GTSSAARD-----------------VGDGSS 183 (195)
T ss_pred CCCCCCCC-----------------CCCCCC
No 470
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.22 E-value=3.5e+02 Score=29.21 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV----ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 162 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~----~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei 162 (473)
++..+=+||..++..+.+..+.++..++++.+++.-....+ ..-+.-+..|+..|...+........++-.....+
T Consensus 296 ~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i 375 (542)
T KOG0993|consen 296 ILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARLVVASETI 375 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhchHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 163 DLHIQREGGLEMNIANL-----------------------QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 219 (473)
Q Consensus 163 ~~L~~kl~~le~rl~~L-----------------------K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie 219 (473)
..-...+. ...++ ..=+.-+.+...++...+......-..+..++..|...++
T Consensus 376 ~~e~~rl~----q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle 451 (542)
T KOG0993|consen 376 ADEDSRLR----QINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLE 451 (542)
T ss_pred HHHHHHHH----HHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 220 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 267 (473)
Q Consensus 220 ~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe 267 (473)
.....-..++-++..-.+.-+.....+..++.+..-++.+-..+.-+.
T Consensus 452 ~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~ 499 (542)
T KOG0993|consen 452 KERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMN 499 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
No 471
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=51.03 E-value=3.3e+02 Score=28.86 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
.+...+..++..+..+..+...++.....+...+..-+..+. .+...+..++..+..+..++......+......+...
T Consensus 93 ~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 172 (421)
T TIGR03794 93 ELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRD 172 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q ss_pred HHHhHhHH------HHHhchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q 011982 229 TQMESVSK------ETIAGLSVDI-TQLRMQVVELEESRNNLLQENRQLK----ENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 229 ~~ei~~~~------e~L~~l~~e~-~~Lk~q~~eL~deRK~LwrEe~kL~----~~i~~L~~eL~~ae~~l~~a 291 (473)
........ ..+......+ ...+..+..+......+..-...+. ..+..++..+..++..+..+
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~ 246 (421)
T TIGR03794 173 RILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEEL 246 (421)
T ss_pred HHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 472
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.98 E-value=1.1e+02 Score=30.70 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 011982 109 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 172 (473)
Q Consensus 109 LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~l 172 (473)
.+..+..|...+....+....+..+|..|+.+|.......+.+.-+|+.+.....+++..++.+
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=50.91 E-value=3e+02 Score=28.39 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011982 134 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRA 212 (473)
Q Consensus 134 LkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~ 212 (473)
+..+..-....++......+.|+.+.+++..-..+++ -|...|+.+. .+=.+.......+..++....
T Consensus 229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~-----------SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIA-----------SREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDI------TQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~------~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
.+..........++..-.+++-++++|...+... -..+..+..|.++.-.+--+..-+...+..
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHH
No 474
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=50.23 E-value=2.1e+02 Score=26.33 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 011982 99 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK---------------EATLEETIKQLRNQND 163 (473)
Q Consensus 99 ~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk---------------e~~le~eLeeLe~ei~ 163 (473)
.+......+.=+.-+-.++.+...+..+...++.+++.|+.-+...... .+-+..+|.+|.-+..
T Consensus 11 ~~rc~~~~~rCe~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~ 90 (147)
T PF02090_consen 11 LRRCEMFQSRCEQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQ 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 164 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER 217 (473)
Q Consensus 164 ~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leee 217 (473)
.+..+...++.....+.+.|.-|++++-+...=+...+....-..-.-+.++.+
T Consensus 91 ~i~ekR~~l~ke~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~E 144 (147)
T PF02090_consen 91 QIQEKRRQLEKEKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQE 144 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh
No 475
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.19 E-value=2.5e+02 Score=27.29 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 155 IKQLRNQNDLHIQREGGLEMNIANL----QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 155 LeeLe~ei~~L~~kl~~le~rl~~L----K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
+...+..+...+..+.-...|+..| +-....|+..-..|+..+..++..+..++.+++.+.......+.+ .-.
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~---~~~ 175 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE---AGE 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHH
Q ss_pred HhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 231 MESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 275 (473)
Q Consensus 231 ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~ 275 (473)
++..++..-.++-..+-++......|..+...+.++..++....+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 476
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=49.64 E-value=3.1e+02 Score=28.14 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-------HHHHHHH
Q 011982 114 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-------QSEKEFW 186 (473)
Q Consensus 114 keL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-------K~ERD~w 186 (473)
..+...+......+...+..+..++..+............++...+..+......+. |...| +.+.+..
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~----R~~~L~~~g~vS~~~~~~a 157 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLE----RLEPLLAKGYVSAQQVDQA 157 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCcCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 011982 187 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK 236 (473)
Q Consensus 187 LqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~ 236 (473)
.......+..+...+..+..+...+..+......+..-...+......+.
T Consensus 158 ~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 158 RTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 477
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=49.56 E-value=1.7e+02 Score=25.18 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT 293 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~ 293 (473)
|...+..+..++.++...+...+...-.+.....++-.++.++..+.+.-.. ..++...+..++.++....+...-.
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~-- 77 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVM-- 77 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhh
Q 011982 294 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSD 347 (473)
Q Consensus 294 ~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~ 347 (473)
+.+.+||=...+++
T Consensus 78 ----------------------------------------k~v~q~lI~gSgVd 91 (106)
T PF05837_consen 78 ----------------------------------------KNVFQALIVGSGVD 91 (106)
T ss_pred ----------------------------------------HHHHHHHHHhcCCC
No 478
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.41 E-value=2.4e+02 Score=26.92 Aligned_cols=126 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 142 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 221 (473)
Q Consensus 142 ~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L 221 (473)
............-+...+.+-..+..+.. ..-++.|++....++.++...+..+..+...+..-+..+...
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~~ke~~---------~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~ 97 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAIKKEAE---------LEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRR 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 222 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 222 e~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
...+......+......|......+.....++..+..++..-..+...|......
T Consensus 98 ~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk 152 (201)
T PF12072_consen 98 LEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAK 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
No 479
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.97 E-value=1.6e+02 Score=24.73 Aligned_cols=122 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH-HHHhchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK-ETIAGLSVDITQLRMQVVELE-ESRNNLLQENRQ 269 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~-e~L~~l~~e~~~Lk~q~~eL~-deRK~LwrEe~k 269 (473)
.|...+..++.....+...+..++..+..++......+..+.... .-+.-+...-..+..++.... +....|......
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 270 LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
|...+..+..-+..++..+... ......+....+..++..|..+
T Consensus 84 l~~~l~~l~~~~~~~e~~l~~~-----------------~~~e~L~~~~~i~~rl~~l~~~ 127 (127)
T smart00502 84 LTQKQEKLSHAINFTEEALNSG-----------------DPTELLLSKKLIIERLQNLLKQ 127 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----------------CChHHHHHHHHHHHHHHHHhhC
No 480
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.72 E-value=1.9e+02 Score=26.64 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 266 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrE 266 (473)
.++....+...+....+...|..++-..+.|++.|-..-.--.+.|..+..++.+|+.++.++.-++..-..+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.68 E-value=1.6e+02 Score=24.47 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q 011982 212 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL----------------------RMQVVELEESRNNLLQENRQ 269 (473)
Q Consensus 212 ~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~L----------------------k~q~~eL~deRK~LwrEe~k 269 (473)
..+..++..+..++..+..++..+...+..+......| ..-...|.+....+-.+..+
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 270 LKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l 288 (473)
|......+...+..++..+
T Consensus 81 l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 482
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=48.65 E-value=2.1e+02 Score=25.87 Aligned_cols=192 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 011982 94 HLRNERESHIQKEATLEGTV----QQLQNECDLYKEKVAT-LEETIQQLQRQNDLRMQK-EATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~ki----keL~eei~~~~qk~~~-LE~eLkeLq~eI~~~eqk-e~~le~eLeeLe~ei~~L~~ 167 (473)
.++.....+......++..+ .++...+......+.. +...+..+...+...... ...+...+..+...+.....
T Consensus 2 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~ 81 (202)
T PF01442_consen 2 KLDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTS 81 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhc-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhc-hHH
Q 011982 168 REGG-LEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG-LSV 244 (473)
Q Consensus 168 kl~~-le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~-l~~ 244 (473)
.+.. +..+...+..........-. .+...+..+...+......+. ..+...+..+...+......+.. +..
T Consensus 82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~i~~~l~~~~~~l~~~~~~~~~~i~~ 155 (202)
T PF01442_consen 82 ELDESLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEELK------EKIEERLEELSEELTERAEELEAKISE 155 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHhHhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHH
Q 011982 245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE 304 (473)
Q Consensus 245 e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~ 304 (473)
.+..+...+..........+ ......+...+...-..+... |..+++
T Consensus 156 ~~~~l~~~l~~~~~~l~~~l------~~~~~~l~~~~~~~~~~~~~~-------l~~~~~ 202 (202)
T PF01442_consen 156 RLEELRESLEEKAEELKETL------DQRIEELESSIDRISEDIEEA-------LDQVIE 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHCCHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-------HhhccC
No 483
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.39 E-value=1.9e+02 Score=25.30 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH------------------------------------
Q 011982 204 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT------------------------------------ 247 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~------------------------------------ 247 (473)
+..+......+..++..+..++..|...+..+...+..+..=..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 248 ---QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQ 290 (473)
Q Consensus 248 ---~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ 290 (473)
.+.....-+....+.|.....+|...+..+...+......+..
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.38 E-value=1.4e+02 Score=32.09 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM----ESVSKETIAGLSVDITQLRMQVVELEESRNNLL 264 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e----i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lw 264 (473)
..|-.+......+..+++.|..+...+.++|..+... ...+.+++..+..++..+..++..+.+++..+.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.37 E-value=1.1e+02 Score=23.81 Aligned_cols=66 Identities=23% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 206 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 206 ~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
++..++.+|+.++..++.+|..+...+.+..=--..+.+-+..-+.++..+..+...+......|.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 486
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.36 E-value=1.7e+02 Score=24.67 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-
Q 011982 114 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETI-KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA- 191 (473)
Q Consensus 114 keL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eL-eeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi- 191 (473)
..|...+.....+...++..+..+...+..+..........| ..+..-+..+......+-.++.....++-.++....
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRA 212 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~ 212 (473)
.++..+..+...+.....-+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 487
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=48.10 E-value=1.4e+02 Score=24.45 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---HHHHHhchHHHHHHHHHHHHHHHH
Q 011982 201 RDESAALNMKRASLEERLKLLEADKDSWTQMESV---SKETIAGLSVDITQLRMQVVELEE 258 (473)
Q Consensus 201 ~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~---~~e~L~~l~~e~~~Lk~q~~eL~d 258 (473)
.+-+--+...+..+..++.+|+..+..++..+.. +.+.+..+...+..+..+++..++
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=47.97 E-value=2.7e+02 Score=27.05 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKD-SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~-~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
..+......+..+...+...-..+...|. .+...+..+...+. .....+......+...+........+.+.....
T Consensus 56 gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~---~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 56 GGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT---QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 011982 277 LRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 327 (473)
Q Consensus 277 L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL 327 (473)
+-.++..+......+.+.+++-+..+++.+...+...-.+|...++.+|..
T Consensus 133 ~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~ 183 (236)
T cd07651 133 DCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL 183 (236)
T ss_pred HHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=47.86 E-value=2.3e+02 Score=26.24 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHhHHHHHhchHHHHHH
Q 011982 173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKDSWTQMESVSKETIAGLSVDITQ 248 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L----e~EI~~L~~ei~~~~e~L~~l~~e~~~ 248 (473)
+..++.|++.-+..-++...+...+......+..-..++..+..+++.+ ..+++.++..|+...-+|.-+......
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 249 Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
....+.+..+..++..++...|-..+-.|-.+-..+.
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=47.77 E-value=4.9e+02 Score=29.97 Aligned_cols=278 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 011982 75 EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK------- 147 (473)
Q Consensus 75 ~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk------- 147 (473)
+||-++=.-.-..|..++......+..+.+..+..+..++-+.+-+.+....+..-...+...-..+......
T Consensus 365 ~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrr 444 (739)
T PF07111_consen 365 AAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRR 444 (739)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 011982 148 ----------------------------EATLEETIKQLRNQNDLHIQREGGLEMNIANLQ--SEKEFWLQKEAALEQKI 197 (473)
Q Consensus 148 ----------------------------e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK--~ERD~wLqkEi~Le~~I 197 (473)
...+..++..++.+.+.+.+++. +-.++=+.+ .-|+..--....+....
T Consensus 445 v~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLq-lSa~liqqeV~~ArEqgeaE~~~Lse~a 523 (739)
T PF07111_consen 445 VHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQ-LSARLIQQEVGRAREQGEAERQQLSEVA 523 (739)
T ss_pred cchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELE----ESRNNLLQENRQLKE 272 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~-~Lk~q~~eL~----deRK~LwrEe~kL~~ 272 (473)
..++..+......+..+..++..........+.+...+...+.+.+..+. .++.++.++. +....+-+.-..-++
T Consensus 524 qqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARR 603 (739)
T PF07111_consen 524 QQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARR 603 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCC
Q 011982 273 NVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL 352 (473)
Q Consensus 273 ~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l 352 (473)
+..+.--.|..+++...+-..+--+-..-|-++-.-.+..+....++|..--|-|. .++...++.
T Consensus 604 EHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l---------------~rl~~~lps 668 (739)
T PF07111_consen 604 EHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLML---------------QRLLAVLPS 668 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------------HHHHHhcCC
Q ss_pred ---ccccccccccccCCcc
Q 011982 353 ---TSDTEPMSESSDNMSS 368 (473)
Q Consensus 353 ---~~v~g~l~el~~~~~v 368 (473)
.+.|+...+...++++
T Consensus 669 ~~~k~~~~~~~~~s~~~~~ 687 (739)
T PF07111_consen 669 LLEKESSPRPPESSKPASL 687 (739)
T ss_pred cccccccCCCCccccCCCC
No 491
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=47.75 E-value=1.2e+02 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 211 RASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 265 (473)
Q Consensus 211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr 265 (473)
+..+.+++..++..++.+...+..++......+..+..+..++..+.+-.+=+||
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.56 E-value=4.3e+02 Score=29.24 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 75 EAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 154 (473)
Q Consensus 75 ~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e 154 (473)
+.-++.....+..+......++.+.+...+++...|..+.+-.+.++.-.+.+...+..|...+..+......+..+..+
T Consensus 47 e~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e 126 (514)
T TIGR03319 47 TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhc----------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 011982 155 IKQLRNQNDLHIQREGG----------LEMNIANLQSEKEFWLQKEA-ALEQKISQLRDESAALNMKR 211 (473)
Q Consensus 155 LeeLe~ei~~L~~kl~~----------le~rl~~LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei 211 (473)
+..+..+......+.+. ++.--..++.+....++... .++..-...-..+-..-.+.
T Consensus 127 ~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr 194 (514)
T TIGR03319 127 LEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQR 194 (514)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.47 E-value=2.4e+02 Score=26.46 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 202 DESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 274 (473)
Q Consensus 202 ~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i 274 (473)
..+-...+.+.........+..+...|..++..+...+..|+.++..|..+...+.+.++.|..-..+-++.+
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.40 E-value=1.6e+02 Score=33.34 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L 277 (473)
..+......++.++..++..|..++.++..+..++.+..---..-...+..+..++.+++.+...+..+..+|...+.++
T Consensus 552 ~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 552 AELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 011982 278 RSQ 280 (473)
Q Consensus 278 ~~e 280 (473)
..+
T Consensus 632 ~~~ 634 (638)
T PRK10636 632 LLE 634 (638)
T ss_pred hhh
No 495
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=47.29 E-value=1.5e+02 Score=25.65 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKIS--QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 249 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~--~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~L 249 (473)
++..+..|| |+--+.-+.++..+. .+...+..|...+...-++|.++..++...-+.+......|.++..++..+
T Consensus 24 T~kef~efK---d~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 24 THKEFDEFK---DSNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp BHHHHHHH------HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 496
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.96 E-value=2.3e+02 Score=26.01 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHH--------------------------------------
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL-------------------------------------- 249 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~L-------------------------------------- 249 (473)
..++.++...+..++.+|+.|..++..+...+.++...+..+
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 250 --------RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 250 --------k~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
-..+.-|....+.|-.-..+|...+..|...+......+...
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.37 E-value=1.4e+02 Score=23.15 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhch
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL 242 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l 242 (473)
.++|..+..+++.|...+..|..++..+..++.....+-..-..+|..+
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.32 E-value=2e+02 Score=25.90 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 011982 172 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS 235 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~ 235 (473)
|+.....|..+|..|-=....+++.|..|+-+...+..-..+|...|.-|+-.+...+.....+
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 499
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.03 E-value=1.4e+02 Score=24.31 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
..+..++..|+..+.--+.-|+.|...+...+-.+..++..+.-|-.++..++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 500
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=46.02 E-value=4.9e+02 Score=29.48 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 137 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-------------QSEKEFWLQKEAALEQKISQLRDE 203 (473)
Q Consensus 137 Lq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~L-------------K~ERD~wLqkEi~Le~~I~~l~~e 203 (473)
|..++................+..-..-+-..-..+...+..| -..|...+.+=..|-..+..+...
T Consensus 70 l~~q~~~~~s~~~~~~~~~~~l~~le~ll~~~~~gls~~l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~~f~~~~~~ 149 (624)
T PRK12714 70 AISRLLDSGGELSRLQQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQ 149 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ-LRMQVVELEESRNNLLQENRQL 270 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~-Lk~q~~eL~deRK~LwrEe~kL 270 (473)
+..+ ...+..+|...-.+++.+-++|..|..++.. .-..-+.|.|+|..|.+|..++
T Consensus 150 L~~~----------~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~ 207 (624)
T PRK12714 150 MDSL----------SNEVNSGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGY 207 (624)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Done!