Query 011982
Match_columns 473
No_of_seqs 170 out of 198
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l51_B Structural maintenance 99.3 3.5E-13 1.2E-17 124.0 -1.1 78 340-424 4-83 (166)
2 2wd5_B Structural maintenance 99.2 1.6E-12 5.6E-17 123.2 0.1 80 352-444 46-129 (213)
3 3nwc_A SMC protein; structural 99.2 1.4E-12 4.7E-17 122.6 -1.1 94 319-424 5-102 (189)
4 1c1g_A Tropomyosin; contractIl 99.2 7.9E-07 2.7E-11 84.2 37.9 92 88-179 4-95 (284)
5 3l51_A Structural maintenance 99.0 2.7E-11 9.4E-16 110.6 -0.1 96 349-452 11-116 (161)
6 2wd5_A Structural maintenance 98.9 1.9E-10 6.4E-15 111.0 -1.0 67 352-424 51-121 (233)
7 1i84_S Smooth muscle myosin he 98.7 1.4E-08 4.9E-13 118.5 9.6 31 90-120 871-901 (1184)
8 1i84_S Smooth muscle myosin he 98.7 3.8E-08 1.3E-12 115.0 11.9 30 94-123 861-890 (1184)
9 1gxl_A SMC, chromosome segrega 98.5 2.1E-08 7.2E-13 94.1 2.1 65 351-422 40-107 (213)
10 1gxj_A SMC, chromosome segrega 98.4 1.9E-08 6.5E-13 92.9 -1.1 65 351-422 28-95 (186)
11 3na7_A HP0958; flagellar bioge 97.9 0.0029 9.8E-08 61.6 23.4 9 407-415 227-235 (256)
12 3na7_A HP0958; flagellar bioge 97.9 0.0042 1.4E-07 60.4 24.3 46 198-243 93-138 (256)
13 2v71_A Nuclear distribution pr 97.9 0.003 1E-07 58.8 21.9 127 151-288 47-177 (189)
14 3ol1_A Vimentin; structural ge 97.8 0.00052 1.8E-08 59.5 14.3 96 148-246 22-117 (119)
15 2v71_A Nuclear distribution pr 97.8 0.012 4E-07 54.8 24.2 147 70-219 4-154 (189)
16 3o0z_A RHO-associated protein 97.4 0.033 1.1E-06 50.7 20.8 62 109-170 11-72 (168)
17 3o0z_A RHO-associated protein 97.4 0.048 1.6E-06 49.6 21.6 131 125-262 6-136 (168)
18 3swk_A Vimentin; cytoskeleton, 97.3 0.0022 7.4E-08 52.4 11.0 81 150-230 4-84 (86)
19 3vkg_A Dynein heavy chain, cyt 97.1 0.8 2.7E-05 58.4 35.2 64 225-288 2016-2079(3245)
20 2efr_A General control protein 97.1 0.16 5.5E-06 45.7 24.7 91 82-176 3-93 (155)
21 2dfs_A Myosin-5A; myosin-V, in 96.8 0.038 1.3E-06 64.0 19.1 81 208-291 976-1056(1080)
22 3tnu_B Keratin, type II cytosk 96.8 0.015 5E-07 50.8 11.7 27 296-322 84-110 (129)
23 2fxo_A Myosin heavy chain, car 96.7 0.2 6.7E-06 43.7 18.4 41 192-232 80-120 (129)
24 3tnu_A Keratin, type I cytoske 96.6 0.013 4.5E-07 51.3 10.3 104 180-322 8-112 (131)
25 3vkg_A Dynein heavy chain, cyt 96.5 1.4 4.7E-05 56.3 31.3 29 259-287 2078-2106(3245)
26 3s4r_A Vimentin; alpha-helix, 96.5 0.047 1.6E-06 45.1 12.4 37 111-147 9-45 (93)
27 2dfs_A Myosin-5A; myosin-V, in 96.3 0.13 4.4E-06 59.6 19.0 21 197-217 993-1013(1080)
28 3tnu_B Keratin, type II cytosk 96.0 0.1 3.5E-06 45.4 12.6 98 180-277 6-108 (129)
29 3tnu_A Keratin, type I cytoske 95.9 0.094 3.2E-06 45.8 11.8 83 197-282 40-122 (131)
30 2fxo_A Myosin heavy chain, car 95.4 1.2 4.1E-05 38.6 19.4 39 192-230 87-125 (129)
31 2ocy_A RAB guanine nucleotide 95.4 1.4 4.9E-05 39.4 19.9 27 102-128 11-37 (154)
32 2efr_A General control protein 95.3 1.5 5.3E-05 39.3 24.1 58 189-246 71-128 (155)
33 3q8t_A Beclin-1; autophagy, AT 94.7 1.3 4.3E-05 36.6 14.4 56 236-291 31-86 (96)
34 3ol1_A Vimentin; structural ge 94.6 0.96 3.3E-05 38.7 14.0 41 150-190 17-57 (119)
35 3q8t_A Beclin-1; autophagy, AT 94.6 1.2 4.1E-05 36.7 14.1 70 219-288 7-76 (96)
36 2jee_A YIIU; FTSZ, septum, coi 94.1 0.84 2.9E-05 36.6 11.4 70 218-287 8-77 (81)
37 2v66_B Nuclear distribution pr 93.6 2.9 0.0001 35.4 15.3 90 172-261 8-101 (111)
38 2eqb_B RAB guanine nucleotide 93.6 1.2 4E-05 36.9 11.8 76 238-335 20-96 (97)
39 3hnw_A Uncharacterized protein 93.5 2.4 8.1E-05 37.3 14.6 44 237-280 89-132 (138)
40 2ocy_A RAB guanine nucleotide 93.3 4.3 0.00015 36.4 21.3 91 192-288 55-145 (154)
41 3ghg_A Fibrinogen alpha chain; 93.2 2.2 7.6E-05 45.0 16.0 94 191-288 60-154 (562)
42 1m1j_B Fibrinogen beta chain; 92.5 3.1 0.00011 43.6 16.2 78 59-143 76-153 (464)
43 3u1c_A Tropomyosin alpha-1 cha 92.5 4 0.00014 33.8 15.4 54 174-227 9-62 (101)
44 3u1c_A Tropomyosin alpha-1 cha 92.4 4.1 0.00014 33.7 15.3 28 92-119 11-38 (101)
45 2jee_A YIIU; FTSZ, septum, coi 92.3 2.4 8.3E-05 33.9 11.6 59 93-151 9-74 (81)
46 3u59_A Tropomyosin beta chain; 91.7 5 0.00017 33.1 14.8 52 174-225 9-60 (101)
47 3hnw_A Uncharacterized protein 91.6 2 6.7E-05 37.8 11.4 9 206-214 93-101 (138)
48 3a7p_A Autophagy protein 16; c 91.5 2.1 7.2E-05 38.2 11.4 63 208-270 67-129 (152)
49 3bas_A Myosin heavy chain, str 90.4 4.8 0.00016 32.5 11.9 68 214-281 19-86 (89)
50 3u59_A Tropomyosin beta chain; 90.1 7.1 0.00024 32.2 15.3 8 98-105 17-24 (101)
51 1ic2_A Tropomyosin alpha chain 89.7 5 0.00017 31.8 11.3 58 173-230 5-62 (81)
52 3ibp_A Chromosome partition pr 89.5 1.8 6E-05 42.7 10.0 87 323-420 91-182 (302)
53 3ghg_A Fibrinogen alpha chain; 89.2 7.4 0.00025 41.1 15.0 10 59-68 40-49 (562)
54 3mq7_A Bone marrow stromal ant 89.0 9.9 0.00034 32.3 14.3 16 215-230 45-60 (121)
55 3trt_A Vimentin; cytoskeleton, 88.5 4.1 0.00014 31.7 9.9 51 179-229 25-76 (77)
56 1ic2_A Tropomyosin alpha chain 88.5 7.1 0.00024 30.9 11.4 34 256-289 39-72 (81)
57 1deq_A Fibrinogen (alpha chain 88.5 17 0.00057 37.0 16.5 44 248-291 117-160 (390)
58 3swk_A Vimentin; cytoskeleton, 88.0 5.2 0.00018 32.2 10.4 60 198-257 3-62 (86)
59 3a7p_A Autophagy protein 16; c 88.0 13 0.00044 33.1 13.7 63 128-190 71-133 (152)
60 1x79_B RAB GTPase binding effe 87.6 12 0.00041 31.7 13.3 20 305-324 88-107 (112)
61 1l8d_A DNA double-strand break 87.6 9.7 0.00033 31.5 12.3 28 201-228 16-43 (112)
62 3s4r_A Vimentin; alpha-helix, 87.0 11 0.00038 30.7 12.4 31 92-122 11-41 (93)
63 3i00_A HIP-I, huntingtin-inter 86.5 3.5 0.00012 35.4 8.9 39 235-273 38-76 (120)
64 3oja_A Leucine-rich immune mol 86.5 17 0.00058 37.5 16.1 12 311-322 466-477 (487)
65 1m1j_B Fibrinogen beta chain; 86.1 27 0.00093 36.5 17.2 56 192-247 97-152 (464)
66 2b9c_A Striated-muscle alpha t 86.1 15 0.00052 32.4 13.2 36 95-130 8-43 (147)
67 2v4h_A NF-kappa-B essential mo 86.1 11 0.00038 31.7 11.5 24 204-227 33-56 (110)
68 2v66_B Nuclear distribution pr 85.1 16 0.00056 30.8 16.7 12 174-185 56-67 (111)
69 1deq_A Fibrinogen (alpha chain 84.8 24 0.00081 35.9 15.3 11 58-68 42-52 (390)
70 3mq9_A Bone marrow stromal ant 84.7 29 0.001 35.5 16.9 33 182-214 397-430 (471)
71 2e7s_A RAB guanine nucleotide 84.3 1.8 6.1E-05 37.9 6.1 41 192-232 43-83 (135)
72 1z2t_A Anchor peptide Ser65-Le 83.6 0.42 1.4E-05 29.1 1.2 14 449-462 3-16 (26)
73 3bas_A Myosin heavy chain, str 83.3 16 0.00056 29.3 12.0 41 90-130 14-54 (89)
74 1m1j_C Fibrinogen gamma chain; 83.1 23 0.00078 36.5 14.9 53 60-119 15-67 (409)
75 3mq9_A Bone marrow stromal ant 83.1 28 0.00096 35.7 15.9 17 171-187 370-386 (471)
76 3i00_A HIP-I, huntingtin-inter 82.5 13 0.00044 31.9 10.7 39 192-230 44-82 (120)
77 3qh9_A Liprin-beta-2; coiled-c 80.9 18 0.00063 28.7 10.1 55 100-154 22-76 (81)
78 2no2_A HIP-I, huntingtin-inter 80.2 25 0.00085 29.4 15.3 96 186-284 6-101 (107)
79 1gk4_A Vimentin; intermediate 80.1 21 0.0007 28.4 12.5 49 156-204 29-77 (84)
80 1x8y_A Lamin A/C; structural p 79.9 15 0.00051 29.4 9.7 51 155-205 30-80 (86)
81 3jsv_C NF-kappa-B essential mo 79.9 13 0.00044 30.5 9.2 29 250-278 60-88 (94)
82 3he5_B Synzip2; heterodimeric 79.1 10 0.00034 26.6 7.1 43 183-231 4-46 (52)
83 1m1j_A Fibrinogen alpha subuni 78.1 68 0.0023 33.4 16.1 41 248-288 115-155 (491)
84 2eqb_B RAB guanine nucleotide 76.9 30 0.001 28.5 13.6 55 113-167 7-61 (97)
85 3mq7_A Bone marrow stromal ant 75.3 37 0.0013 28.8 13.5 78 89-169 31-108 (121)
86 3a7o_A Autophagy protein 16; c 74.9 26 0.00091 27.1 9.1 34 197-230 27-60 (75)
87 1x79_B RAB GTPase binding effe 74.8 38 0.0013 28.6 13.6 64 124-187 37-104 (112)
88 2xzr_A Immunoglobulin-binding 74.5 34 0.0012 28.0 16.0 95 187-288 12-106 (114)
89 4etp_A Kinesin-like protein KA 74.4 6.7 0.00023 40.3 7.7 53 217-269 4-56 (403)
90 2lw1_A ABC transporter ATP-bin 74.3 14 0.00048 29.6 8.1 25 209-233 22-46 (89)
91 2w83_C C-JUN-amino-terminal ki 73.9 29 0.00098 27.3 9.3 46 200-245 28-73 (77)
92 3efg_A Protein SLYX homolog; x 73.6 7.6 0.00026 30.7 6.1 44 213-256 11-54 (78)
93 1m1j_A Fibrinogen alpha subuni 73.6 91 0.0031 32.5 16.3 10 59-68 41-50 (491)
94 1f5n_A Interferon-induced guan 71.9 76 0.0026 34.1 15.6 12 180-191 536-547 (592)
95 1gk7_A Vimentin; intermediate 71.6 9.6 0.00033 26.2 5.5 33 110-142 5-37 (39)
96 2lw1_A ABC transporter ATP-bin 71.3 35 0.0012 27.2 9.8 23 204-226 24-46 (89)
97 3jsv_C NF-kappa-B essential mo 70.5 32 0.0011 28.1 9.2 22 258-279 61-82 (94)
98 2i1j_A Moesin; FERM, coiled-co 70.4 5.3 0.00018 43.0 6.0 94 197-290 365-458 (575)
99 1gk6_A Vimentin; intermediate 69.5 4 0.00014 30.5 3.5 28 295-322 8-35 (59)
100 3l4q_C Phosphatidylinositol 3- 69.3 66 0.0022 29.1 16.4 108 182-289 32-148 (170)
101 4h22_A Leucine-rich repeat fli 67.6 52 0.0018 27.3 10.5 35 255-289 48-82 (103)
102 4h22_A Leucine-rich repeat fli 66.7 53 0.0018 27.3 9.9 48 236-283 36-83 (103)
103 3ghg_B Fibrinogen beta chain; 65.8 1E+02 0.0035 32.1 14.2 61 77-137 82-142 (461)
104 1go4_E MAD1 (mitotic arrest de 63.4 3.5 0.00012 34.3 2.3 77 252-328 13-95 (100)
105 3efg_A Protein SLYX homolog; x 63.3 23 0.00078 27.9 6.9 46 95-140 12-57 (78)
106 2xzr_A Immunoglobulin-binding 62.3 64 0.0022 26.5 16.7 64 192-255 31-94 (114)
107 2i1j_A Moesin; FERM, coiled-co 62.1 12 0.0004 40.3 6.8 15 370-387 551-565 (575)
108 1m1j_C Fibrinogen gamma chain; 60.7 1.5E+02 0.0052 30.3 15.6 9 192-200 35-43 (409)
109 1wt6_A Myotonin-protein kinase 60.4 62 0.0021 25.7 10.0 57 111-167 10-66 (81)
110 3c9i_A Tail needle protein GP2 60.1 1E+02 0.0034 28.7 11.5 67 86-152 80-146 (242)
111 1d7m_A Cortexillin I; coiled-c 59.0 70 0.0024 25.8 15.7 22 183-204 20-41 (101)
112 1wt6_A Myotonin-protein kinase 58.3 68 0.0023 25.5 10.2 57 178-234 14-70 (81)
113 3u06_A Protein claret segregat 57.7 20 0.00069 36.8 7.4 50 219-268 6-55 (412)
114 3viq_B Mating-type switching p 57.1 32 0.0011 27.7 6.7 22 247-268 44-65 (85)
115 3uux_B Mitochondrial division 57.0 1E+02 0.0034 29.4 11.3 68 77-144 157-224 (242)
116 2xnx_M M protein, M1-BC1; cell 56.0 44 0.0015 29.4 8.0 33 198-230 69-101 (146)
117 4emc_A Monopolin complex subun 55.8 57 0.0019 30.0 9.1 14 407-420 128-141 (190)
118 2no2_A HIP-I, huntingtin-inter 55.3 90 0.0031 25.9 16.9 17 121-137 25-41 (107)
119 2oqq_A Transcription factor HY 53.8 50 0.0017 22.9 6.3 33 107-139 6-38 (42)
120 3fpp_A Macrolide-specific effl 52.8 94 0.0032 30.0 11.1 15 371-385 191-205 (341)
121 2d4y_A HAP1, flagellar HOOK-as 52.6 2.1E+02 0.0071 29.3 17.4 81 180-270 63-148 (463)
122 3cl3_D NF-kappa-B essential mo 52.3 36 0.0012 29.3 6.7 42 150-191 66-107 (130)
123 3ghg_C Fibrinogen gamma chain; 52.2 2.1E+02 0.0072 29.3 15.4 55 60-121 15-69 (411)
124 3trt_A Vimentin; cytoskeleton, 51.2 80 0.0027 24.1 9.9 41 245-285 36-76 (77)
125 2yy0_A C-MYC-binding protein; 50.7 12 0.00041 27.4 3.1 26 308-333 19-44 (53)
126 3l4q_C Phosphatidylinositol 3- 50.2 1.4E+02 0.0049 26.8 15.7 48 113-160 19-66 (170)
127 1wle_A Seryl-tRNA synthetase; 50.2 97 0.0033 32.6 11.2 27 256-282 121-147 (501)
128 3ghg_B Fibrinogen beta chain; 50.1 2.4E+02 0.0082 29.3 15.2 48 186-233 86-133 (461)
129 1go4_E MAD1 (mitotic arrest de 49.5 91 0.0031 25.7 8.6 16 153-168 75-90 (100)
130 1p9i_A Cortexillin I/GCN4 hybr 48.6 14 0.00047 23.3 2.6 26 305-330 3-28 (31)
131 4etp_A Kinesin-like protein KA 47.4 46 0.0016 34.0 8.0 37 224-260 4-40 (403)
132 3vmx_A Voltage-gated hydrogen 47.3 76 0.0026 22.7 6.7 40 194-233 3-42 (48)
133 2zqm_A Prefoldin beta subunit 47.3 1.1E+02 0.0039 24.8 13.2 38 252-289 71-108 (117)
134 2dq0_A Seryl-tRNA synthetase; 47.2 91 0.0031 32.3 10.4 25 258-282 76-100 (455)
135 3qne_A Seryl-tRNA synthetase, 46.7 1E+02 0.0035 32.3 10.7 19 263-281 83-101 (485)
136 1joc_A EEA1, early endosomal a 46.6 89 0.003 26.4 8.5 32 181-212 4-35 (125)
137 3m9b_A Proteasome-associated A 46.0 19 0.00064 34.7 4.4 19 396-414 146-164 (251)
138 1t2k_D Cyclic-AMP-dependent tr 45.3 69 0.0024 23.5 6.7 29 256-284 27-55 (61)
139 4b6x_A AVRRPS4, avirulence pro 44.8 74 0.0025 25.2 6.9 57 262-321 26-82 (90)
140 1gmj_A ATPase inhibitor; coile 44.0 1.2E+02 0.0042 24.2 9.0 57 184-243 20-78 (84)
141 3he5_B Synzip2; heterodimeric 43.1 82 0.0028 22.0 7.0 33 84-116 11-43 (52)
142 2oqq_A Transcription factor HY 43.1 70 0.0024 22.2 5.7 33 241-273 7-39 (42)
143 3ghg_C Fibrinogen gamma chain; 42.7 2.9E+02 0.01 28.2 15.7 34 187-220 30-63 (411)
144 1wle_A Seryl-tRNA synthetase; 42.4 1.5E+02 0.0052 31.1 11.2 29 260-288 118-146 (501)
145 1ci6_A Transcription factor AT 42.1 88 0.003 23.3 6.9 9 218-226 46-54 (63)
146 1f5n_A Interferon-induced guan 42.1 3.5E+02 0.012 28.9 14.8 9 60-68 447-455 (592)
147 2yy0_A C-MYC-binding protein; 41.0 46 0.0016 24.2 4.9 27 204-230 21-47 (53)
148 2k48_A Nucleoprotein; viral pr 40.6 1.4E+02 0.0049 24.8 8.3 18 237-254 82-99 (107)
149 3iox_A AGI/II, PA; alpha helix 40.4 3.5E+02 0.012 28.4 16.4 60 123-185 7-66 (497)
150 3he5_A Synzip1; heterodimeric 39.7 91 0.0031 21.5 6.6 10 220-229 35-44 (49)
151 3viq_B Mating-type switching p 39.5 66 0.0023 25.8 6.0 18 311-328 37-54 (85)
152 1ci6_A Transcription factor AT 39.4 96 0.0033 23.1 6.7 33 253-285 25-57 (63)
153 3t98_B Nucleoporin NUP58/NUP45 38.8 1.6E+02 0.0053 23.9 9.9 67 200-266 17-87 (93)
154 1s94_A S-syntaxin; three helix 38.3 2.1E+02 0.0071 25.2 10.9 99 232-334 38-152 (180)
155 1ses_A Seryl-tRNA synthetase; 38.1 1.3E+02 0.0045 30.7 9.8 30 211-240 30-59 (421)
156 1jcd_A Major outer membrane li 37.5 1.2E+02 0.004 22.1 7.9 35 113-147 6-40 (52)
157 1fxk_A Prefoldin; archaeal pro 36.5 1.6E+02 0.0055 23.4 12.6 34 255-288 69-102 (107)
158 3m9b_A Proteasome-associated A 36.3 39 0.0013 32.4 5.0 6 221-226 29-34 (251)
159 3cl3_D NF-kappa-B essential mo 36.3 1.4E+02 0.0047 25.7 7.8 11 295-305 117-127 (130)
160 1cxz_B Protein (PKN); protein- 35.1 1.2E+02 0.0041 24.3 6.9 20 181-200 28-47 (86)
161 2c5k_T Syntaxin TLG1, T-snare 34.4 1.4E+02 0.0046 24.2 7.4 15 236-250 74-88 (95)
162 3qne_A Seryl-tRNA synthetase, 34.4 1.9E+02 0.0064 30.3 10.3 26 263-288 76-101 (485)
163 2xv5_A Lamin-A/C; structural p 33.5 1.7E+02 0.0057 22.7 8.7 39 192-230 16-54 (74)
164 1jcd_A Major outer membrane li 33.4 1.4E+02 0.0047 21.7 7.4 24 200-223 9-32 (52)
165 2dq0_A Seryl-tRNA synthetase; 33.4 1.9E+02 0.0065 29.9 10.2 31 261-291 72-102 (455)
166 3uux_B Mitochondrial division 33.1 3.2E+02 0.011 25.9 12.0 50 88-137 161-210 (242)
167 3lss_A Seryl-tRNA synthetase; 32.6 2.3E+02 0.0077 29.7 10.6 24 260-283 113-136 (484)
168 2pms_C Pneumococcal surface pr 32.4 2.4E+02 0.0081 24.1 9.0 17 214-230 66-82 (125)
169 1ses_A Seryl-tRNA synthetase; 32.3 1.5E+02 0.0051 30.3 9.0 21 206-226 39-59 (421)
170 3hhm_B NISH2 P85alpha; PI3KCA, 32.1 4E+02 0.014 26.7 17.4 31 253-283 221-251 (373)
171 1fxk_C Protein (prefoldin); ar 32.0 2.2E+02 0.0076 23.7 12.9 36 249-284 93-128 (133)
172 2yko_A LINE-1 ORF1P; RNA-bindi 31.7 58 0.002 30.9 5.3 10 445-454 175-184 (233)
173 3he4_A Synzip6; heterodimeric 31.2 1.2E+02 0.0042 21.4 5.5 31 192-222 21-51 (56)
174 2wt7_A Proto-oncogene protein 30.6 1.6E+02 0.0056 21.7 9.5 10 218-227 46-55 (63)
175 3mtu_A Tropomyosin alpha-1 cha 30.5 1.5E+02 0.0052 22.9 6.7 40 156-195 5-44 (75)
176 1t3j_A Mitofusin 1; coiled coi 30.2 1.3E+02 0.0045 24.6 6.5 26 310-335 66-91 (96)
177 1gk6_A Vimentin; intermediate 29.7 1.7E+02 0.0057 21.5 6.7 22 180-201 27-48 (59)
178 2wt7_B Transcription factor MA 29.0 2.3E+02 0.0078 22.9 10.8 28 89-116 20-47 (90)
179 2dq3_A Seryl-tRNA synthetase; 28.5 95 0.0032 31.8 6.8 22 262-283 79-100 (425)
180 4fi5_A Nucleoprotein; structur 28.0 2.7E+02 0.0091 23.4 8.3 12 157-168 26-37 (113)
181 1avy_A Fibritin, gpwac M; bact 27.9 1.5E+02 0.005 22.9 5.9 35 195-229 8-42 (74)
182 2avr_X Adhesion A; antiparalle 27.8 2.8E+02 0.0096 23.5 14.6 21 88-108 7-27 (119)
183 3u06_A Protein claret segregat 27.6 1.4E+02 0.0046 30.6 7.7 9 350-358 108-116 (412)
184 1ez3_A Syntaxin-1A; three heli 27.0 2.6E+02 0.0088 22.8 12.3 26 205-230 8-33 (127)
185 2xv5_A Lamin-A/C; structural p 26.9 2.2E+02 0.0075 22.0 8.2 30 175-204 27-56 (74)
186 3t97_C Nuclear pore glycoprote 25.5 1.6E+02 0.0054 22.2 5.8 47 200-246 10-56 (64)
187 2yko_A LINE-1 ORF1P; RNA-bindi 25.2 1.1E+02 0.0038 28.9 6.0 19 210-228 7-25 (233)
188 3tul_A Cell invasion protein S 25.0 3.5E+02 0.012 23.8 12.6 76 216-291 20-95 (158)
189 2y3a_B Phosphatidylinositol 3- 24.9 4.9E+02 0.017 25.3 11.7 42 181-222 32-73 (302)
190 2wt7_B Transcription factor MA 24.9 2.7E+02 0.0093 22.4 11.2 24 207-230 53-76 (90)
191 2ic9_A Nucleocapsid protein; h 24.7 2.9E+02 0.0098 22.6 8.3 16 238-253 53-68 (96)
192 2ic6_A Nucleocapsid protein; h 24.7 2.6E+02 0.0087 22.0 8.3 16 237-252 52-67 (78)
193 2pms_C Pneumococcal surface pr 24.6 3.3E+02 0.011 23.3 9.8 22 270-291 66-87 (125)
194 2xu6_A MDV1 coiled coil; prote 24.5 2.5E+02 0.0084 21.8 7.1 19 185-203 17-36 (72)
195 2pnv_A Small conductance calci 24.5 1.3E+02 0.0045 20.9 4.7 11 215-225 22-32 (43)
196 3q0x_A Centriole protein; cent 24.4 3.9E+02 0.013 25.1 9.6 40 126-165 179-218 (228)
197 2k48_A Nucleoprotein; viral pr 24.1 3.1E+02 0.011 22.7 9.5 32 89-120 34-65 (107)
198 2p22_A Suppressor protein STP2 23.8 4E+02 0.014 24.0 9.9 83 150-244 9-91 (174)
199 2xu6_A MDV1 coiled coil; prote 23.7 2.6E+02 0.0088 21.7 9.3 55 87-141 11-65 (72)
200 3he5_A Synzip1; heterodimeric 23.7 1.8E+02 0.0062 20.0 6.4 13 128-140 34-46 (49)
201 4e61_A Protein BIM1; EB1-like 23.7 3.2E+02 0.011 22.7 11.0 42 153-194 11-52 (106)
202 4dk0_A Putative MACA; alpha-ha 23.6 2.4E+02 0.0081 27.3 8.5 19 272-290 136-154 (369)
203 4dnd_A Syntaxin-10, SYN10; str 23.0 3.5E+02 0.012 23.0 11.6 95 150-246 31-128 (130)
204 3edv_A Spectrin beta chain, br 22.9 4.7E+02 0.016 24.4 29.3 34 296-329 254-287 (323)
205 1kd8_A GABH AIV, GCN4 acid bas 22.9 1.8E+02 0.006 19.5 4.9 23 118-140 8-30 (36)
206 3m48_A General control protein 22.7 1.1E+02 0.0037 20.2 3.7 25 255-279 4-28 (33)
207 3lss_A Seryl-tRNA synthetase; 22.7 4.2E+02 0.014 27.6 10.4 22 267-288 113-134 (484)
208 2oxj_A Hybrid alpha/beta pepti 22.4 1.7E+02 0.006 19.3 5.0 26 254-279 4-29 (34)
209 1joc_A EEA1, early endosomal a 22.3 3.5E+02 0.012 22.7 8.6 17 214-230 16-32 (125)
210 2dq3_A Seryl-tRNA synthetase; 22.2 2.5E+02 0.0086 28.6 8.6 71 258-328 30-102 (425)
211 3c3g_A Alpha/beta peptide with 21.5 1.8E+02 0.0062 19.1 5.0 26 254-279 3-28 (33)
212 1ez3_A Syntaxin-1A; three heli 21.4 3.3E+02 0.011 22.1 11.1 21 184-204 8-28 (127)
213 1avy_A Fibritin, gpwac M; bact 20.8 1.8E+02 0.0061 22.5 5.2 33 218-250 10-42 (74)
214 3s9g_A Protein hexim1; cyclin 20.7 3.5E+02 0.012 22.2 9.3 23 187-209 36-58 (104)
215 3c3f_A Alpha/beta peptide with 20.6 1.9E+02 0.0065 19.1 5.0 26 254-279 4-29 (34)
216 3a2a_A Voltage-gated hydrogen 20.6 2.2E+02 0.0077 20.8 5.4 40 194-233 10-49 (58)
217 1deb_A APC protein, adenomatou 20.5 2.5E+02 0.0084 20.3 7.7 39 248-286 7-45 (54)
218 2pnv_A Small conductance calci 20.4 2.2E+02 0.0074 19.8 5.2 24 115-138 13-36 (43)
219 3i2w_A Syndapin, LD46328P; EFC 20.3 5.3E+02 0.018 24.0 16.1 15 395-409 264-278 (290)
220 1kd8_B GABH BLL, GCN4 acid bas 20.1 2E+02 0.007 19.2 5.3 13 125-137 15-27 (36)
No 1
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.26 E-value=3.5e-13 Score=124.00 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=68.5
Q ss_pred hhhhhhhhcccCCccccccccccccCCccccccccccccccccccCCc-ceee-cCCCchhhhcccccccCCceeeecCC
Q 011982 340 LSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG-INGV-HADPPPLVLSSSEAEYSGEIVQIPLD 417 (473)
Q Consensus 340 l~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns-~vvv-~d~~a~~~~~~~~~~~~gritf~PLn 417 (473)
|.++.+..++.+++||||+|+||+. | +++|++|+| +..|.. |||| ++++|..++++|.+.+.||+||||||
T Consensus 4 ~~~l~~~~~~~~~~Gv~G~v~dLi~---v-~~~y~~Aie---~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~ 76 (166)
T 3l51_B 4 LDAIIQEKKSGRIPGIYGRLGDLGA---I-DEKYDIAIS---SCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLD 76 (166)
T ss_dssp HHHHHHHHHHTSSTTEEEEGGGSCB---C-CGGGHHHHH---HHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGG
T ss_pred HHHHHHHHHhCCCCCceEEHHHhee---e-CHHHHHHHH---HHHhhCceEEECCHHHHHHHHHHHHHcCCCeEEEEECc
Confidence 5566777778889999999999999 8 899999999 777733 9999 99999999999999999999999999
Q ss_pred CCCcchh
Q 011982 418 DKEVQDL 424 (473)
Q Consensus 418 ~~~~~~~ 424 (473)
.+.++..
T Consensus 77 ~i~~~~~ 83 (166)
T 3l51_B 77 KMTVWAK 83 (166)
T ss_dssp GTGGGTT
T ss_pred ccccccc
Confidence 9986543
No 2
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.20 E-value=1.6e-12 Score=123.21 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=68.0
Q ss_pred CccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhccccccc-CCceeeecCCCCCcchhhhc
Q 011982 352 LTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEY-SGEIVQIPLDDKEVQDLELQ 427 (473)
Q Consensus 352 l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~-~gritf~PLn~~~~~~~~~~ 427 (473)
++|+||||++++. | +++|++|+| ++.|+. |||| ++.+|..++.+|...+ .||+|||||+.+.++.+ .
T Consensus 46 ~~g~~g~l~dli~---v-~~~~e~Ave---~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~--~ 116 (213)
T 2wd5_B 46 QNGYHGIVMNNFE---C-EPAFYTCVE---VTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDT--A 116 (213)
T ss_dssp HTTEEEEGGGSEE---C-CGGGHHHHH---HHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCC--C
T ss_pred CCCceeeHHHhcc---c-CHHHHHHHH---HHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccC--C
Confidence 6889999999999 8 899999999 999988 8888 7789999999998776 99999999999887665 4
Q ss_pred cccccCCCCcccccCCc
Q 011982 428 VVESYTDKVAAVPLTDA 444 (473)
Q Consensus 428 ~p~~~~~~~~~vPl~~~ 444 (473)
+|. ...++|+++.
T Consensus 117 ~~~----~~~~~~l~~~ 129 (213)
T 2wd5_B 117 YPE----TNDAIPMISK 129 (213)
T ss_dssp CCC----CSSEEEGGGG
T ss_pred CCC----CCCceeHHHH
Confidence 554 3567787776
No 3
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.18 E-value=1.4e-12 Score=122.62 Aligned_cols=94 Identities=6% Similarity=-0.034 Sum_probs=73.0
Q ss_pred HHHHhhhhhhhhhhhhhHHhhhhhhhhhhcccCCccccccccccccCCcccccc-ccccccccccccCCc--ceee-cCC
Q 011982 319 ELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNR-LETQGVVAVKEDRNG--INGV-HAD 394 (473)
Q Consensus 319 ~L~~k~neL~~~~~~~~~~~Gl~s~~~~~~~~~l~~v~g~l~el~~~~~v~~~~-~~t~~e~~~~~agns--~vvv-~d~ 394 (473)
.+..|++-|..+.+. .-.+|+.++ . +..++||||||++|+. | +++ |++|+| ++.|+. +||| +++
T Consensus 5 ~~~~r~~~l~~~~~~-~~~~~v~~l---~-~~~~~gv~G~l~dLi~---V-~~~kye~Ave---~aLG~~l~~iVVd~~~ 72 (189)
T 3nwc_A 5 SSERELIAAEAQREV-RGNRAAEEL---K-RSGIGGIYGTLAELIK---V-KDEAYALAIE---VALGNRADNVVVEDEL 72 (189)
T ss_dssp HHHHHHHHHHHHHHH-SSCTHHHHH---T-TSCCCSEEEEHHHHCE---E-SCGGGHHHHH---HHHGGGGGCEEESSHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHH---H-hcCCCCceEEHHHhee---e-ChhhHHHHHH---HHhccccccEEECCHH
Confidence 344566666655544 223444333 2 2468999999999999 8 666 999999 999888 9999 889
Q ss_pred CchhhhcccccccCCceeeecCCCCCcchh
Q 011982 395 PPPLVLSSSEAEYSGEIVQIPLDDKEVQDL 424 (473)
Q Consensus 395 ~a~~~~~~~~~~~~gritf~PLn~~~~~~~ 424 (473)
+|..++++|...+.||+||||||.+.+++.
T Consensus 73 ~A~~~i~~Lk~~~~GRatflpl~~i~~~~~ 102 (189)
T 3nwc_A 73 VAEKAIKYLKEHKLGRLTFLPLNKIKPKHV 102 (189)
T ss_dssp HHHHHHHHHHHTTCCCCCEEETTTCCCCCC
T ss_pred HHHHHHHHHHhcCCCceEEEECCccccccC
Confidence 999999999988999999999999987543
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.16 E-value=7.9e-07 Score=84.18 Aligned_cols=92 Identities=9% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
++..+..++.++..+...+..++..+..+...+......+..+...+..++..+.........+...+..+...+..+..
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555444444444444444444444444444
Q ss_pred HhhchHHHHHHH
Q 011982 168 REGGLEMNIANL 179 (473)
Q Consensus 168 kl~~le~rl~~L 179 (473)
.+..+..++..+
T Consensus 84 ~~~~~~~~~~~~ 95 (284)
T 1c1g_A 84 DVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444333333333
No 5
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.02 E-value=2.7e-11 Score=110.63 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=70.3
Q ss_pred ccCCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchhh
Q 011982 349 VTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLE 425 (473)
Q Consensus 349 ~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~~ 425 (473)
+.++.||||+|++|+. |.+.+|++|+| +..|+. |||| ++++|..+++++ ...||+||||||.+.++.+.
T Consensus 11 ~~~~~gv~G~v~dLi~---v~d~~y~~Ave---~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~tflpL~~i~~~~~~ 82 (161)
T 3l51_A 11 NWNRNSVKGLVASLIN---VKDNSTATALE---VVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYTIIPLNKISARCIA 82 (161)
T ss_dssp TCCGGGEEEEGGGSCE---ESCGGGHHHHH---HHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEEEEETTTCCCCCCC
T ss_pred CCCcCccEEEHHHhee---eCchhHHHHHH---HHhccccceEEECCHHHHHHHHHHH--hhCCcEEEEECccccccCcC
Confidence 4567899999999999 73479999999 989888 9999 999999999986 35899999999999875531
Q ss_pred ---hccccccCCCCcccccCCc----cccCcchh
Q 011982 426 ---LQVVESYTDKVAAVPLTDA----PLIGAPFR 452 (473)
Q Consensus 426 ---~~~p~~~~~~~~~vPl~~~----~~~~~~f~ 452 (473)
+++|........+.|++|. |.|.++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~a~dlv~~d~~~~~a~~ 116 (161)
T 3l51_A 83 PETLRVAQNLVGPDNVHVALSLVDYKPELQKGME 116 (161)
T ss_dssp HHHHHHHHHHHCTTSEEEGGGGEECCGGGHHHHH
T ss_pred HHHHhhhhhcCCCcchhHHHHHhcCCHHHHHHHH
Confidence 1122100001235566665 66666664
No 6
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=98.86 E-value=1.9e-10 Score=110.95 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=58.2
Q ss_pred Ccc-ccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcchh
Q 011982 352 LTS-DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDL 424 (473)
Q Consensus 352 l~~-v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~~~ 424 (473)
++| +||||++++. |.+++|++|+| +..|+. +||| ++.+|..++.+|...+.||+|||||+.+.++..
T Consensus 51 ~~g~v~G~l~dli~---v~~~~ye~Ave---~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~ 121 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQ---PTQKKYQIAVT---KVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPT 121 (233)
T ss_dssp SGGGEEEEHHHHEE---ESSGGGHHHHH---HHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCC
T ss_pred CCCCeeeeHHHhce---eCcHHHHHHHH---HHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCc
Confidence 688 9999999999 64699999999 888887 8888 678999999999888899999999999865443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.74 E-value=1.4e-08 Score=118.48 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNEC 120 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei 120 (473)
..+..++..+..+...+..++.+...+..++
T Consensus 871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.71 E-value=3.8e-08 Score=114.99 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 94 HLRNERESHIQKEATLEGTVQQLQNECDLY 123 (473)
Q Consensus 94 qlE~E~~~l~q~~a~LE~kikeL~eei~~~ 123 (473)
.++.++..+...+..++..+.++..++..+
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 9
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=98.53 E-value=2.1e-08 Score=94.14 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=58.0
Q ss_pred CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcc
Q 011982 351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ 422 (473)
Q Consensus 351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~ 422 (473)
.+.|+||||++++. | +++|++|+| +..|+. +||| ++.+|..++.+|.....||+||+||+.+.++
T Consensus 40 ~~~g~~g~l~~li~---v-~~~~e~Ave---~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~ 107 (213)
T 1gxl_A 40 RFPGLVDVVSNLIE---V-DEKYSLAVS---VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS 107 (213)
T ss_dssp SCTTEEEEGGGTCB---C-CHHHHHHHH---HHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCC
T ss_pred hhCCCceehhheee---e-CHHHHHHHH---HHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCC
Confidence 57899999999999 8 899999999 888888 8888 6788888999998778999999999998754
No 10
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=98.42 E-value=1.9e-08 Score=92.92 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=58.6
Q ss_pred CCccccccccccccCCccccccccccccccccccCCc--ceee-cCCCchhhhcccccccCCceeeecCCCCCcc
Q 011982 351 ALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGV-HADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ 422 (473)
Q Consensus 351 ~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv-~d~~a~~~~~~~~~~~~gritf~PLn~~~~~ 422 (473)
.+.|+||+|++++. | +++|++|+| +..|+. |||| ++.+|..++++|...+.||+||+||+.+.++
T Consensus 28 ~~~g~~g~l~~li~---v-~~~~e~Ave---~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~ 95 (186)
T 1gxj_A 28 RFPGLVDVVSNLIE---V-DEKYSLAVS---VLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGS 95 (186)
T ss_dssp GCTTEEEEHHHHCB---C-CGGGHHHHH---HHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCC
T ss_pred hhCCcceehhheec---c-CHHHHHHHH---HHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCC
Confidence 57899999999999 8 899999999 888888 8888 6789999999998888999999999998754
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.91 E-value=0.0029 Score=61.56 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=5.9
Q ss_pred cCCceeeec
Q 011982 407 YSGEIVQIP 415 (473)
Q Consensus 407 ~~gritf~P 415 (473)
.-|||.|.+
T Consensus 227 ~CgRIL~~~ 235 (256)
T 3na7_A 227 YCGRILYAE 235 (256)
T ss_dssp TTCCEEECS
T ss_pred CCCeeEEeC
Confidence 567777754
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.89 E-value=0.0042 Score=60.36 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 243 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~ 243 (473)
..+..++..+..++..++.++..+...++.+...+......+..+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444333333333333333
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.89 E-value=0.003 Score=58.78 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 151 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE----QKISQLRDESAALNMKRASLEERLKLLEADKD 226 (473)
Q Consensus 151 le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le----~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~ 226 (473)
++.+|..+++.+..|..+. ..++.+.+.|-.+..... ..++.++.++..+......+...|..|+..-+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~-------~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADN-------QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444433 345566666655544333 34788888888888888888888888888888
Q ss_pred HHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 227 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 227 ~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.|....-.....+.+++..++.+-....-|..+.. +...|.-.+++|++++..+...+
T Consensus 120 dlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 120 DLERAKRATIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC--------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777778888888888888777777775554 23444555555555555444433
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.80 E-value=0.00052 Score=59.46 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 148 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 148 e~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
+..++.+|..+......+..+++.++..+.+||..++..+.....++++|..++..++.......+|+.++..|..+|.+
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666677777788888888888888999999999999999999999999999999999999
Q ss_pred HHHHhHhHHHHHhchHHHH
Q 011982 228 WTQMESVSKETIAGLSVDI 246 (473)
Q Consensus 228 L~~ei~~~~e~L~~l~~e~ 246 (473)
++. .++++|..+++++
T Consensus 102 LKk---~heeEl~eLq~qi 117 (119)
T 3ol1_A 102 LKK---LHEEEIQELQAQI 117 (119)
T ss_dssp HHH---HHHHHHHHHHSCC
T ss_pred HHH---HHHHHHHHHHHHh
Confidence 988 6777777776543
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.80 E-value=0.012 Score=54.80 Aligned_cols=147 Identities=12% Similarity=0.085 Sum_probs=94.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 70 SANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA 149 (473)
Q Consensus 70 ~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~ 149 (473)
.--|++.|-..|...=........+++.+.......-..||.. |..++.....+...+...+..|..++..|..+..
T Consensus 4 ~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888877888888888888888887777766643 4556666666666677777777777777666655
Q ss_pred HHHHH----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEET----IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 219 (473)
Q Consensus 150 ~le~e----LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie 219 (473)
....+ +..|+.++..+......+..++..+....|.+-+..=.+...+..+..-+...-.+..-|+.++.
T Consensus 81 ~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 81 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 66666666666666666666666666666665555544444555444444444444444444443
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.40 E-value=0.033 Score=50.69 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 109 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 170 (473)
Q Consensus 109 LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~ 170 (473)
|+.++.+++..+..-.+....+.+...++...+...+....++...+..|......|...+.
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~ 72 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYY 72 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443333333333444444433333333333
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.38 E-value=0.048 Score=49.64 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 125 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 204 (473)
Q Consensus 125 qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el 204 (473)
.++..|+.++.+++..+..-......+.....++......+.....+++.+...+...++.+-+.-+.|+..+..=+...
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444555555555555555555555555555555555555554444434444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN 262 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~ 262 (473)
......+.+++. .|..|..++......+.....+...|...+..|..+..+
T Consensus 86 ~q~se~~~elq~-------ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 86 GHDSEMIGDLQA-------RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333 333333333333334444444444444444444444443
No 18
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=97.32 E-value=0.0022 Score=52.42 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
.++.+|..+......+..++..++....+|+..++..+.....+++++..++..++.+.....+|+.+++.|..+|.+|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666677777777777778888889999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 011982 230 Q 230 (473)
Q Consensus 230 ~ 230 (473)
+
T Consensus 84 k 84 (86)
T 3swk_A 84 K 84 (86)
T ss_dssp T
T ss_pred h
Confidence 4
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.08 E-value=0.8 Score=58.40 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=26.8
Q ss_pred HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 225 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 225 I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
+..++.++....+.+...+.++.++..++..|+++...+.+|...|...++.++..+.+|+.-+
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444444444444444444443333
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.06 E-value=0.16 Score=45.70 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 82 LQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 161 (473)
Q Consensus 82 ~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~e 161 (473)
.+.|.+|+......+........ ++..+.....+......+...|+..+..+-..+.+.+........+-..++.+
T Consensus 3 ~~lE~qlkeaae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeq 78 (155)
T 2efr_A 3 KQLEDKVEELLSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEE 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 35556666553333333333222 77777777777777777777777777777777776666666666666666666
Q ss_pred HHHHHHHhhchHHHH
Q 011982 162 NDLHIQREGGLEMNI 176 (473)
Q Consensus 162 i~~L~~kl~~le~rl 176 (473)
+..|..++..++.|.
T Consensus 79 Ik~L~~kLKEAE~RA 93 (155)
T 2efr_A 79 IKVLSDKLKEAETRA 93 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555444433
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.82 E-value=0.038 Score=64.03 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
..+...++..+..|+.+++.++.++..+..+...+++....++ +.|+++...|..|...|+..++.|...+...+..
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555554 3566777777777777777777777666665554
Q ss_pred HHhh
Q 011982 288 KLQH 291 (473)
Q Consensus 288 l~~a 291 (473)
....
T Consensus 1053 ~~~~ 1056 (1080)
T 2dfs_A 1053 ITET 1056 (1080)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.75 E-value=0.015 Score=50.85 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.5
Q ss_pred hhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 296 QKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 296 ~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
+..++.+|..++..+.++..||+.|++
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334777888888889999999999998
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.68 E-value=0.2 Score=43.65 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
.|+..|..+...+.........|......++.++..|..++
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.59 E-value=0.013 Score=51.28 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 258 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~d 258 (473)
+.+-+.|-+..+ .+..........+...+.++..+...|..|+.+|+.+......++..|.+.+...
T Consensus 8 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~------------ 75 (131)
T 3tnu_A 8 RKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY------------ 75 (131)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------
Confidence 556677777776 6666666555555555555555555555555555444443333333333222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 259 SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 259 eRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
..++..+.. .+..++.+|..++..+.++..||++|++
T Consensus 76 -------------------~~~l~~~q~--------~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 76 -------------------CMQLAQIQE--------MIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -------------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 2334677888888888999999999998
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.54 E-value=1.4 Score=56.31 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 259 SRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 259 eRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
--..|-.|..+=...+..+...+.++-.+
T Consensus 2078 Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2078 LLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 33344444444444455555555554443
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=96.48 E-value=0.047 Score=45.07 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
.+++.|+++++++..++..||.+.+.|..+|..+..+
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999998888764
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.30 E-value=0.13 Score=59.61 Aligned_cols=21 Identities=29% Similarity=0.454 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEER 217 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leee 217 (473)
+..++.++..+..+...+++.
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.00 E-value=0.1 Score=45.39 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH----HHHHHHHHH
Q 011982 180 QSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD----ITQLRMQVV 254 (473)
Q Consensus 180 K~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e----~~~Lk~q~~ 254 (473)
+.+-+.|-+..+ .+..........+...+.++..+...|..|+.+|+.+......++..|.+.+.. +.+++..+.
T Consensus 6 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~ 85 (129)
T 3tnu_B 6 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLA 85 (129)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566776666 666666666666666666666666666666666666666666666555555432 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSL 277 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L 277 (473)
.|..+...++.+.....+..+.|
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.86 E-value=0.094 Score=45.81 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
|..++..+++|..++..+......|+..|...+. .+...+..++..+..+..++..+....-...+|-+.|-..--.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433 2233444444444444444444444444444444444444444
Q ss_pred HHHHHH
Q 011982 277 LRSQLS 282 (473)
Q Consensus 277 L~~eL~ 282 (473)
|..++.
T Consensus 117 Ld~EIa 122 (131)
T 3tnu_A 117 LEQEIA 122 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.39 E-value=1.2 Score=38.57 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
.+...+.........|......++.+|..|..+|+.+..
T Consensus 87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555556666666666666665543
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.39 E-value=1.4 Score=39.43 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 102 HIQKEATLEGTVQQLQNECDLYKEKVA 128 (473)
Q Consensus 102 l~q~~a~LE~kikeL~eei~~~~qk~~ 128 (473)
.+.+.+.|+.++..+..++.....++.
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~ 37 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIE 37 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333
No 32
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.31 E-value=1.5 Score=39.30 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH
Q 011982 189 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI 246 (473)
Q Consensus 189 kEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~ 246 (473)
++...+.+|..+...+.....+....+..+..|+.+|+.+...+...+.....+..++
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666666666666666666666666666555544444433333333
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.72 E-value=1.3 Score=36.64 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
...-..+..++..+..+...|..+-...|++...+...+-.+.+++..++..+..+
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444445555556666677777777777777777777766666555
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.61 E-value=0.96 Score=38.73 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE 190 (473)
.++..|..|+.++..+....+.+...+..++...+.|-.+.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777777777666666666666655555555444
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=94.60 E-value=1.2 Score=36.74 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
..++.++..+..+...+...|..+..+...+..++..+..+-..|-.++.+.|+....+.-.+-.....+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555555555555555555555555555555555544444444
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.06 E-value=0.84 Score=36.58 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 218 LKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 287 (473)
Q Consensus 218 ie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~ 287 (473)
++.|+..|..+-+.|.-+..++..++.++..|..+..++...|..|.++...|......-+..|..+-..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555556666666666666666666666666666666666666666666665555443
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.65 E-value=2.9 Score=35.42 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH
Q 011982 172 LEMNIANLQSEKEFWLQKEAAL----EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT 247 (473)
Q Consensus 172 le~rl~~LK~ERD~wLqkEi~L----e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~ 247 (473)
|+.+...|..|++.|-.+.... ...++.++.++..+......+...|..|+..-+.|.-..-.....+.+++..++
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 4444555677777777666533 345777888888888888888888888888888887766666677777777777
Q ss_pred HHHHHHHHHHHHHH
Q 011982 248 QLRMQVVELEESRN 261 (473)
Q Consensus 248 ~Lk~q~~eL~deRK 261 (473)
.+-....=|..+..
T Consensus 88 ~aiErnalLE~El~ 101 (111)
T 2v66_B 88 QAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666665554443
No 38
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.61 E-value=1.2 Score=36.92 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=41.4
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHH
Q 011982 238 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-SSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE 316 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL-~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~E 316 (473)
+++....++..|...+..-...|...-.+...+...+..|...| +.|..+|..+ -.+
T Consensus 20 ~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a----------------------r~e 77 (97)
T 2eqb_B 20 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA----------------------RKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence 33334444444555555555555555555555555555555443 3355555444 234
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 011982 317 NIELVEKVNDLSVKLDRQS 335 (473)
Q Consensus 317 y~~L~~k~neL~~~~~~~~ 335 (473)
...+..|+..|..|+.|.+
T Consensus 78 ~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 78 KYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5566677778888777764
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.50 E-value=2.4 Score=37.30 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 237 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 280 (473)
Q Consensus 237 e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~e 280 (473)
.++..+..++..++.+++.+..+...|.++...|...+..|+.+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444333334444444444444444333
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.34 E-value=4.3 Score=36.36 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 271 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~ 271 (473)
....++..+...+..-.......+.....++.+++.|+..+ +++-..|= ...+.++..+...-..|......-.
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL---FeEAN~MV---a~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---FDEANNMV---ADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777777888888888888888743 33222221 2334444444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 272 ENVSSLRSQLSSDESKK 288 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l 288 (473)
..+..++..|..++.-+
T Consensus 129 ~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 129 TLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544433
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.20 E-value=2.2 Score=44.99 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011982 191 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQ 269 (473)
Q Consensus 191 i~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~-~Lk~q~~eL~deRK~LwrEe~k 269 (473)
.++...|..+++.+..+.+...+...-+..+-+.+..-..+..+... .-.++. +|+.++..|+.+..+-.....-
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN----tynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN----TYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH----HHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566665555555444444444433333333221111111111 111222 4444555555555444455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 270 LKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l 288 (473)
|+..|..+..+++++|..+
T Consensus 136 LQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555
No 42
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=92.54 E-value=3.1 Score=43.61 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=50.4
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 59 DADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ 138 (473)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq 138 (473)
++--+||+| |-| ...+...+..++..+.+|+.....+.+.......-++.|+..+.....++...+..++.+.
T Consensus 76 ~~G~~CPTt--C~l-----~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 76 ELGVLCPTG--CEL-----QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp TTCEEEECT--THH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCCCc--cHH-----HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 467789998 444 4456667777788888888888777766666666666666666655555555555555554
Q ss_pred HHHHH
Q 011982 139 RQNDL 143 (473)
Q Consensus 139 ~eI~~ 143 (473)
..++.
T Consensus 149 ~~~e~ 153 (464)
T 1m1j_B 149 TEMEL 153 (464)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.52 E-value=4 Score=33.84 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
.++..++.+.|.|+..-..++..+.........+..++.+|...+..++.+++.
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777666666665555444444444444444444444444433
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.40 E-value=4.1 Score=33.74 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 92 VKHLRNERESHIQKEATLEGTVQQLQNE 119 (473)
Q Consensus 92 i~qlE~E~~~l~q~~a~LE~kikeL~ee 119 (473)
+..+..+...+..+...++.+++.+...
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~ 38 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEER 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443433333333333333333
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.34 E-value=2.4 Score=33.91 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 011982 93 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT-------LEETIQQLQRQNDLRMQKEATL 151 (473)
Q Consensus 93 ~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~-------LE~eLkeLq~eI~~~eqke~~l 151 (473)
.+|+..+..++..++-+...+.+|+.+...+.+.... +..++..|+.+...|..++..+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433 4444444444444444443333
No 46
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.66 E-value=5 Score=33.13 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 174 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 225 (473)
Q Consensus 174 ~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI 225 (473)
.++..++.+.|.|+..-..++..+.........+..++..|...+..++.++
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777666666665544444444444444443333333333
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.56 E-value=2 Score=37.84 Aligned_cols=9 Identities=11% Similarity=0.050 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 011982 206 ALNMKRASL 214 (473)
Q Consensus 206 ~L~~ei~~L 214 (473)
+++.++..+
T Consensus 93 ~lK~el~~~ 101 (138)
T 3hnw_A 93 DLKHELIAA 101 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.46 E-value=2.1 Score=38.17 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 208 NMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 270 (473)
Q Consensus 208 ~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL 270 (473)
...+..|+.++..++..|..+..++..-...+..+..++..|+-+++.+.++.+.|..|...|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555566666666666665555556666666666666667777777777766666544
No 49
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.41 E-value=4.8 Score=32.53 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL 281 (473)
++.++..+...+.........+......+..+.++|..++.++.+.+..|......|...+..+...+
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333344444444445555555555555566666666666666666666666665544
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.10 E-value=7.1 Score=32.18 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 011982 98 ERESHIQK 105 (473)
Q Consensus 98 E~~~l~q~ 105 (473)
+...+..+
T Consensus 17 e~e~a~d~ 24 (101)
T 3u59_A 17 DKENAIDR 24 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.74 E-value=5 Score=31.76 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 173 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 173 e~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
+.++..++.+.|.|..+-..++..+.........+..++..|...+..++.+++....
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655555555555544444444444444444444444444433
No 52
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=89.45 E-value=1.8 Score=42.67 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=45.4
Q ss_pred hhhhhhhhhhhhhHHhhhhhhh--hhhcccCCccccccccccccCCccccccccccccccccccCCc--ceeecCCCch-
Q 011982 323 KVNDLSVKLDRQSVAAGLSSAI--GSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNG--INGVHADPPP- 397 (473)
Q Consensus 323 k~neL~~~~~~~~~~~Gl~s~~--~~~~~~~l~~v~g~l~el~~~~~v~~~~~~t~~e~~~~~agns--~vvv~d~~a~- 397 (473)
+-..|..+..+++..-|-...+ .++.+ +.||. |+|+++--++.+-.|.+|.= |.. .|||.|-.++
T Consensus 91 ~k~~Le~~ierLs~pgg~~dprL~~LAe~--~GGvl--LseiYDDI~ieDApyfsAly------Gpar~AIVV~Dl~~~~ 160 (302)
T 3ibp_A 91 RKNAVDEEIERLSQPGGSEDQRLNALAER--FGGVL--LSEIYDDVSLEDAPYFSALY------GPSRHAIVVPDLSQVT 160 (302)
T ss_dssp HHHHHHHHHHHHHSCCCCCCHHHHHHHHH--SSSEE--HHHHSTTCCTTTHHHHHHHT------GGGGSEEECSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHH--hCCEe--hhhhhcCCChhhHHHHHHHh------cccceeeEeCCHHHHH
Confidence 3444444444544444433322 22222 44553 66777754454455777665 444 4555553332
Q ss_pred hhhcccccccCCceeeecCCCCC
Q 011982 398 LVLSSSEAEYSGEIVQIPLDDKE 420 (473)
Q Consensus 398 ~~~~~~~~~~~gritf~PLn~~~ 420 (473)
.-+..+. +-++.|.||+=|--.
T Consensus 161 ~~L~~l~-dcPeDLyLIegd~da 182 (302)
T 3ibp_A 161 EHLEGLT-DCPEDLYLIEGDPQS 182 (302)
T ss_dssp HHHTTCC-SSCSSCEEECSCSTT
T ss_pred HHHhhcc-CCCcceEEeeCChhh
Confidence 3334444 567899999875443
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.23 E-value=7.4 Score=41.12 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=6.3
Q ss_pred ccCCCCCCCc
Q 011982 59 DADRHQSNGA 68 (473)
Q Consensus 59 ~~~~~~~~~~ 68 (473)
|..--||+|-
T Consensus 40 DwGvkCPSGC 49 (562)
T 3ghg_A 40 DWNYKCPSGC 49 (562)
T ss_dssp SBTTEEECHH
T ss_pred ccCCCCCccc
Confidence 4555677776
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.97 E-value=9.9 Score=32.30 Aligned_cols=16 Identities=6% Similarity=-0.080 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 011982 215 EERLKLLEADKDSWTQ 230 (473)
Q Consensus 215 eeeie~Le~EI~~L~~ 230 (473)
+.+......-...|..
T Consensus 45 eaQAaTCNqTV~tL~~ 60 (121)
T 3mq7_A 45 EAQAATANHTVMALMA 60 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 55
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=88.52 E-value=4.1 Score=31.73 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 179 LQSEKEFWLQKEA-ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 179 LK~ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
-+.|-+.|.+..+ .+..........+...+.++..+...+..|+.+|+.++
T Consensus 25 nr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 25 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3678888998887 77777777777777777777777777777777776653
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.52 E-value=7.1 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 256 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 256 L~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+..+...|.+....|...++.+...+..+...|.
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444443
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.52 E-value=17 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 248 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 248 ~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
+|..++.-|+..-..-......|+..+..+..++++++..+.-+
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455556666666666666666666433
No 58
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.98 E-value=5.2 Score=32.19 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 257 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~ 257 (473)
..++.++..+..+...+..++..+...++.++...++--......+.++..++.-++.+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455555555555555555555555555444333322333333333444444443333
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.97 E-value=13 Score=33.08 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 011982 128 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 190 (473)
Q Consensus 128 ~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkE 190 (473)
..++.++..++..|..+...+......++.++.++..|..++..++.++..++.|.+.++..-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444445555555555556666666666666665444444
No 60
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=87.62 E-value=12 Score=31.68 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=2.1
Q ss_pred HhhhhHHHHHHHHHHHHHhh
Q 011982 305 AAGALIDKLITENIELVEKV 324 (473)
Q Consensus 305 ~~~~~~~~l~~Ey~~L~~k~ 324 (473)
..+-.+..|..||.-|..||
T Consensus 88 ~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 88 QVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHTC---------------
T ss_pred HHHHHHHHHHhhccchhhhh
Confidence 34444455555555555443
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.56 E-value=9.7 Score=31.46 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 201 RDESAALNMKRASLEERLKLLEADKDSW 228 (473)
Q Consensus 201 ~~el~~L~~ei~~Leeeie~Le~EI~~L 228 (473)
...+..|...+..+..++..+...+..+
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444333
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.02 E-value=11 Score=30.68 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 92 VKHLRNERESHIQKEATLEGTVQQLQNECDL 122 (473)
Q Consensus 92 i~qlE~E~~~l~q~~a~LE~kikeL~eei~~ 122 (473)
+..|.+.....+.+...||..-+.|..++..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544444443
No 63
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.51 E-value=3.5 Score=35.42 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 235 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 235 ~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~ 273 (473)
....+..+.+.++.|..++.+-...+.....+...|+..
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e 76 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444444444444444433
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.47 E-value=17 Score=37.53 Aligned_cols=12 Identities=25% Similarity=0.016 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 011982 311 DKLITENIELVE 322 (473)
Q Consensus 311 ~~l~~Ey~~L~~ 322 (473)
..+.+.|+++..
T Consensus 466 ~~~~~~~~~~~~ 477 (487)
T 3oja_A 466 ASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhcccHHHHHHH
Confidence 333444444443
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=86.15 E-value=27 Score=36.51 Aligned_cols=56 Identities=5% Similarity=0.168 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT 247 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~ 247 (473)
.++..|..++..++.+.........-+..|...+.....++.+....|.+....+.
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 45555555555555554444433333334444444444443333333333333333
No 66
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.09 E-value=15 Score=32.43 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 130 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L 130 (473)
++.++.....+++....++..+....+...+....+
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~l 43 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVI 43 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 67
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.08 E-value=11 Score=31.69 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKDS 227 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~ 227 (473)
+.....-+..-..+|..+..+|..
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.09 E-value=16 Score=30.80 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 011982 174 MNIANLQSEKEF 185 (473)
Q Consensus 174 ~rl~~LK~ERD~ 185 (473)
.++..+....|.
T Consensus 56 ~~iReLEq~NDD 67 (111)
T 2v66_B 56 KYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhchH
Confidence 333333333333
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.83 E-value=24 Score=35.90 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=8.3
Q ss_pred cccCCCCCCCc
Q 011982 58 VDADRHQSNGA 68 (473)
Q Consensus 58 ~~~~~~~~~~~ 68 (473)
=|.+.-||+|-
T Consensus 42 eDwG~kCPsGC 52 (390)
T 1deq_A 42 EDWNTKCPSGC 52 (390)
T ss_pred hhccCCCCccc
Confidence 35777899996
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.73 E-value=29 Score=35.50 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 182 EKEFWLQKEA-ALEQKISQLRDESAALNMKRASL 214 (473)
Q Consensus 182 ERD~wLqkEi-~Le~~I~~l~~el~~L~~ei~~L 214 (473)
.+..||++.+ .+++.+...+.+.......+..|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 3444455554 44444444444444444433333
No 71
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.31 E-value=1.8 Score=37.95 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 232 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei 232 (473)
.+..++..+...+..-.......+.....++.+++.|+..+
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666677777777777777777743
No 72
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=83.58 E-value=0.42 Score=29.05 Aligned_cols=14 Identities=57% Similarity=0.921 Sum_probs=12.4
Q ss_pred cchhHHHHHHhhcc
Q 011982 449 APFRLVSFVAKYVS 462 (473)
Q Consensus 449 ~~f~~~~~~~~~~~ 462 (473)
+.|||+-||-|||-
T Consensus 3 kgfrlvlfvkryvr 16 (26)
T 1z2t_A 3 KGFRLVLFVKRYVR 16 (26)
T ss_dssp CCTTHHHHHHHHTH
T ss_pred ccEEEeeeHHHHHH
Confidence 46999999999995
No 73
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.29 E-value=16 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 90 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 130 (473)
Q Consensus 90 ~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~L 130 (473)
.++..++.++..+...+...+...++|......+.+....|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333333
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=83.10 E-value=23 Score=36.49 Aligned_cols=53 Identities=4% Similarity=0.008 Sum_probs=34.6
Q ss_pred cCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 60 ADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNE 119 (473)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~ee 119 (473)
+---||+|=.+ ..-+...+..+...+..|+..++.+.+.-..+..-++.++.-
T Consensus 15 ~G~~CPT~C~i-------~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 15 FGSYCPTTCGI-------ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp GCCEEECTTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCcccH-------HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567887532 234566677777888888777777776666666555555554
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.07 E-value=28 Score=35.66 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=7.1
Q ss_pred chHHHHHHHHHHHHHHH
Q 011982 171 GLEMNIANLQSEKEFWL 187 (473)
Q Consensus 171 ~le~rl~~LK~ERD~wL 187 (473)
+.++.+..+..+.+..|
T Consensus 370 t~eeal~~~~~~i~~~l 386 (471)
T 3mq9_A 370 TVDEALKDAQTRITAAR 386 (471)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.52 E-value=13 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
.+...|..+..+++.-.........+.+.|..+++.+..
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555533
No 77
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.89 E-value=18 Score=28.72 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 100 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 154 (473)
Q Consensus 100 ~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~e 154 (473)
..+.+.+..|..++.++.++...+..++.+-..++..|+..+......+..+..+
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3688888888888888888888888888888877777777766665554444433
No 78
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.22 E-value=25 Score=29.39 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 186 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 265 (473)
Q Consensus 186 wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lwr 265 (473)
+|++-.++.+.+...+.....+...+..|+.++..+..+... ....-...|..+..++..-...+..++..+..+..
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~---k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQR---KTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666665555555555555555555555411111 00011233333334444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 266 ENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 266 Ee~kL~~~i~~L~~eL~~a 284 (473)
+...|...+..+..+...+
T Consensus 83 ~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 83 SEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=80.06 E-value=21 Score=28.38 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 156 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 204 (473)
Q Consensus 156 eeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el 204 (473)
..++..+..+...+..++..+...-.++..+++-...|+.+|...+.-+
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444444444444445566666666666666666555443
No 80
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.87 E-value=15 Score=29.40 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 155 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 205 (473)
Q Consensus 155 LeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~ 205 (473)
+..++..+..+...+..++..+...-.++..+++-...|+.+|...+.-+.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 333444444444444444444444455666666666666666666555443
No 81
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.86 E-value=13 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 250 RMQVVELEESRNNLLQENRQLKENVSSLR 278 (473)
Q Consensus 250 k~q~~eL~deRK~LwrEe~kL~~~i~~L~ 278 (473)
++.+..+..+...|+.+...|.+..+.|.
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 82
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.09 E-value=10 Score=26.58 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 183 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 231 (473)
Q Consensus 183 RD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~e 231 (473)
|..++++. |..++...-.+...-..|+.-|..|..+|.-|+.+
T Consensus 4 rnaylrkk------iarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 4 RNAYLRKK------IARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH------HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 45555555 44444433344444444444444444444444433
No 83
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.10 E-value=68 Score=33.38 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 248 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 248 ~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
+|..++.-|++.-..-..-..-|+..+..+..+++++|..+
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554444444556666666666677777766666
No 84
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.89 E-value=30 Score=28.49 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
+..|..++..+...+...+.++..|...+..-.......+.....+..+++.|..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555444444444444444444444444433
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.27 E-value=37 Score=28.79 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 168 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~k 168 (473)
+.++.+...-.....-.-+.-..++..|...+.....+. ...+++|+.+|..+.+++.....+++.|+.....+...
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 333334333333333333444455555554444322222 33455555555555555555555555555555544444
Q ss_pred h
Q 011982 169 E 169 (473)
Q Consensus 169 l 169 (473)
+
T Consensus 108 ~ 108 (121)
T 3mq7_A 108 I 108 (121)
T ss_dssp H
T ss_pred h
Confidence 3
No 86
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.94 E-value=26 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.004 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
+.....++..|+..+.---...+.|..+|=+++-
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNI 60 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTI 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHH
Confidence 3333333333333333333333333333333333
No 87
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=74.82 E-value=38 Score=28.62 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH----HHHHHHHHHHH
Q 011982 124 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI----ANLQSEKEFWL 187 (473)
Q Consensus 124 ~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl----~~LK~ERD~wL 187 (473)
..+......++..|...+...++.+..+...+..++........++..-++++ ..|+.+.|.+.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 34455555555666666666666666666666555555555444444333332 34455544433
No 88
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=74.50 E-value=34 Score=28.04 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 187 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 266 (473)
Q Consensus 187 LqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrE 266 (473)
|....-+...+......+..+...+......|..-..-|...+. .+++..+.++..+.|+.+-..++|.+-..
T Consensus 12 ~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr-------~lQqh~aRlnsqQrQI~ENhkEMKq~aaq 84 (114)
T 2xzr_A 12 LSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTR-------TLQQHSARLDSQQRQINENHKEMKQIEDK 84 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555555555555555554444 34444555666677777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 267 NRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 267 e~kL~~~i~~L~~eL~~ae~~l 288 (473)
...|-+..-.+++++.+...-+
T Consensus 85 saaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 85 IEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888887776554
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.36 E-value=6.7 Score=40.30 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 217 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 269 (473)
Q Consensus 217 eie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~k 269 (473)
+|..++.+|..++.+...+...+..++.++.++..++......|+.|..+..+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666666666666666666666555443
No 90
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.29 E-value=14 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 209 MKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 209 ~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
.++..|...|..|+.+|..|...+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554
No 91
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.91 E-value=29 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHH
Q 011982 200 LRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 245 (473)
Q Consensus 200 l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e 245 (473)
+.-..++|-.+++.|..+.+.+..++.++......+..++..++.+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444444444444443
No 92
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.59 E-value=7.6 Score=30.71 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHH
Q 011982 213 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 256 (473)
Q Consensus 213 ~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL 256 (473)
.++..|..|+..+.++...++.+.+.+...+.++..|+.++..|
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333333333333
No 93
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=73.57 E-value=91 Score=32.45 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=8.1
Q ss_pred ccCCCCCCCc
Q 011982 59 DADRHQSNGA 68 (473)
Q Consensus 59 ~~~~~~~~~~ 68 (473)
|..--||+|-
T Consensus 41 DwGvkCPSGC 50 (491)
T 1m1j_A 41 DWGTKCPSGC 50 (491)
T ss_dssp STTTEECCST
T ss_pred cccCCCCCcc
Confidence 5777899996
No 94
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=71.89 E-value=76 Score=34.10 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEA 191 (473)
Q Consensus 180 K~ERD~wLqkEi 191 (473)
..+|..|++...
T Consensus 536 e~~~~~~~~e~~ 547 (592)
T 1f5n_A 536 ENDRVQLLKEQE 547 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 95
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=71.57 E-value=9.6 Score=26.17 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 110 EGTVQQLQNECDLYKEKVATLEETIQQLQRQND 142 (473)
Q Consensus 110 E~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~ 142 (473)
..+++.|.+.++++..++..++.+...|+.+|.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999988764
No 96
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=71.34 E-value=35 Score=27.19 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKD 226 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~ 226 (473)
+..|...|..|+.+|..|+..+.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 97
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=70.47 E-value=32 Score=28.13 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~ 279 (473)
..|..+..+...|...+..|+.
T Consensus 61 adREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 98
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.35 E-value=5.3 Score=43.01 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 197 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 276 (473)
Q Consensus 197 I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~ 276 (473)
+..+.......+.+...|+......+.+...|..+-....++-..|..++.+....+..|.++...--.|-.+|...+..
T Consensus 365 ~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 444 (575)
T 2i1j_A 365 ILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVED 444 (575)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444443333334444444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHh
Q 011982 277 LRSQLSSDESKKLQ 290 (473)
Q Consensus 277 L~~eL~~ae~~l~~ 290 (473)
.+.....+...+..
T Consensus 445 a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 445 ARRKQDEAAAALLA 458 (575)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 99
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=69.46 E-value=4 Score=30.51 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=24.4
Q ss_pred chhchHHHHHHhhhhHHHHHHHHHHHHH
Q 011982 295 EQKDFSTQIEAAGALIDKLITENIELVE 322 (473)
Q Consensus 295 ~~~dMe~ql~~~~~~~~~l~~Ey~~L~~ 322 (473)
.+..++.+++.++..+..+..||++|++
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999998
No 100
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=69.31 E-value=66 Score=29.08 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhHhHHHHHhchHHHHHHHHHH
Q 011982 182 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK---------DSWTQMESVSKETIAGLSVDITQLRMQ 252 (473)
Q Consensus 182 ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI---------~~L~~ei~~~~e~L~~l~~e~~~Lk~q 252 (473)
++|.+-.....+..+|..++..+.+....+.-.++++...+.-- +.-..++..+.....-+.+.+..+...
T Consensus 32 ~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~s 111 (170)
T 3l4q_C 32 EYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHES 111 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333335555666667777777777776666664333210 011112223334444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
...|.+..+...-....|.+.+.+|.-++..+.....
T Consensus 112 k~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 112 RTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555555555566666666665555554443
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.62 E-value=52 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
+++.+.+...++...+.+..+.|..++..+...|.
T Consensus 48 ql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 48 ESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666666554
No 102
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.65 E-value=53 Score=27.26 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 236 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
++.|..+++.+..++.+..+..-+...+.+....|...+..|+..|..
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444555555555555555554443
No 103
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=65.81 E-value=1e+02 Score=32.12 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
-..-+...+..+...+..|+..+..+.+.-.....-++.|+.........+...+.-+++.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s 142 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEY 142 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHH
Confidence 3456777888888999999999888888888888888888887776666655544333333
No 104
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.37 E-value=3.5 Score=34.25 Aligned_cols=77 Identities=18% Similarity=0.090 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhh----chhchHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 011982 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDE--SKKLQHATS----EQKDFSTQIEAAGALIDKLITENIELVEKVN 325 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae--~~l~~ae~~----~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~n 325 (473)
+++.+..+-.+|.+|..+|.+.+..|+.+|.... .....+.+. .+--.....++..-.++.|..|...|..++-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555543311 000000000 3333444555677888999999999988776
Q ss_pred hhh
Q 011982 326 DLS 328 (473)
Q Consensus 326 eL~ 328 (473)
-|.
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 554
No 105
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.35 E-value=23 Score=27.93 Aligned_cols=46 Identities=15% Similarity=0.043 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 95 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ 140 (473)
Q Consensus 95 lE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~e 140 (473)
++..+..|.-++|..+..+.+|+..+....+.+..+...+..|..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 106
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=62.30 E-value=64 Score=26.45 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 255 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~e 255 (473)
.+...+......+......+......+.+-...+++...++.+--++|.....+...|.++.-.
T Consensus 31 ~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh 94 (114)
T 2xzr_A 31 AIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYH 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444444444444444444444444444444444444444444444333
No 107
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.12 E-value=12 Score=40.25 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=11.0
Q ss_pred cccccccccccccccCCc
Q 011982 370 NNRLETQGVVAVKEDRNG 387 (473)
Q Consensus 370 ~~~~~t~~e~~~~~agns 387 (473)
.+||+|.=. +..||.
T Consensus 551 rdKykTLr~---ir~Gnt 565 (575)
T 2i1j_A 551 RDKYKTLRE---IRKGNT 565 (575)
T ss_dssp CCHHHHHHH---HTCSCH
T ss_pred chHHHHHHH---HhcCCc
Confidence 578888777 677774
No 108
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.72 E-value=1.5e+02 Score=30.30 Aligned_cols=9 Identities=0% Similarity=0.276 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 011982 192 ALEQKISQL 200 (473)
Q Consensus 192 ~Le~~I~~l 200 (473)
.+...+..+
T Consensus 35 ~V~~~l~~L 43 (409)
T 1m1j_C 35 TTDGELLEI 43 (409)
T ss_dssp HHHHHHHHH
T ss_pred cchhHHHHH
Confidence 344444433
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.40 E-value=62 Score=25.68 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 111 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 167 (473)
Q Consensus 111 ~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~ 167 (473)
....+|+..++.-.+.++.+..++..++......+.++...+.+..+|..++..+..
T Consensus 10 ~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777666666555544444444444444433333
No 110
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=60.10 E-value=1e+02 Score=28.74 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 86 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 152 (473)
Q Consensus 86 ~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le 152 (473)
+-++..|.+++-+...+..+++.-+..+..+.-++...+..+..|...+..|...+...+..+..+.
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
No 111
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=58.96 E-value=70 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 183 KEFWLQKEAALEQKISQLRDES 204 (473)
Q Consensus 183 RD~wLqkEi~Le~~I~~l~~el 204 (473)
|+.++++...++..+..++.+.
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~ 41 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEG 41 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 112
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.27 E-value=68 Score=25.46 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 011982 178 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV 234 (473)
Q Consensus 178 ~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~ 234 (473)
.|+...+..++....+..++...+.....+..++.+.+.....|..++..++.++..
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666666666666666666555554443
No 113
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=57.75 E-value=20 Score=36.84 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 219 KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 268 (473)
Q Consensus 219 e~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~ 268 (473)
..|+.++..+++....+...+..+..++..+.+++.+...+|+.|..+..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555555555554444
No 114
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=57.11 E-value=32 Score=27.68 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 247 TQLRMQVVELEESRNNLLQENR 268 (473)
Q Consensus 247 ~~Lk~q~~eL~deRK~LwrEe~ 268 (473)
-++...|+++.|---.|..-.+
T Consensus 44 I~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 44 IDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 4445556666665555444333
No 115
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=56.96 E-value=1e+02 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 77 ERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR 144 (473)
Q Consensus 77 ~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~ 144 (473)
+++.+...-..+..++.=+..|+..+-.+++.|...-+-+-.+++.+++....|+..|..++.+|...
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666665555433
No 116
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=56.01 E-value=44 Score=29.41 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 198 SQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 198 ~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
..+...+......+..++.++..+..++..|+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeA 101 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTI 101 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence 333333344444444444444444444444333
No 117
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.85 E-value=57 Score=29.97 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=9.9
Q ss_pred cCCceeeecCCCCC
Q 011982 407 YSGEIVQIPLDDKE 420 (473)
Q Consensus 407 ~~gritf~PLn~~~ 420 (473)
..++|++||+=.=+
T Consensus 128 ~~~e~~Y~P~l~~r 141 (190)
T 4emc_A 128 QVTEVIYAPVLKQR 141 (190)
T ss_dssp -CCEEEEEECCSSS
T ss_pred CCceEEEecccccc
Confidence 36899999975443
No 118
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.33 E-value=90 Score=25.93 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 121 DLYKEKVATLEETIQQL 137 (473)
Q Consensus 121 ~~~~qk~~~LE~eLkeL 137 (473)
....+.+..|+.++..+
T Consensus 25 ~e~e~~k~eL~~~~~~~ 41 (107)
T 2no2_A 25 VDLEREKKELEDSLERI 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 119
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.77 E-value=50 Score=22.94 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 107 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 139 (473)
Q Consensus 107 a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~ 139 (473)
..||.+.++|+...+.+..++..++.+...|+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555555555555555555555555555543
No 120
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.75 E-value=94 Score=29.97 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=7.9
Q ss_pred ccccccccccccccC
Q 011982 371 NRLETQGVVAVKEDR 385 (473)
Q Consensus 371 ~~~~t~~e~~~~~ag 385 (473)
+.+..-+.+|+...+
T Consensus 191 ~~l~v~~~v~e~~~~ 205 (341)
T 3fpp_A 191 SAMLVKAQVSEADVI 205 (341)
T ss_dssp SEEEEEEECCGGGST
T ss_pred CcEEEEEEECHHHHh
Confidence 455555555555443
No 121
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=52.62 E-value=2.1e+02 Score=29.33 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHH-----HHHH
Q 011982 180 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR-----MQVV 254 (473)
Q Consensus 180 K~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk-----~q~~ 254 (473)
-..|...+.+=..|-..+......+..++..+ ..+|...=.+|+. +-.+|+.|..++.... ..-+
T Consensus 63 ~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~---n~~i~~~V~~iN~-------l~~qIa~LN~qI~~~~~~~~g~~~n 132 (463)
T 2d4y_A 63 PAARQALIGKAEGLVNQFKTTDQYLRDQDKQV---NIAIGSSVAQINN-------YAKQIANLNDQISRMTGVGAGASPN 132 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhccCCCCCch
Confidence 45555555555555555555555544443332 2333333333333 4444444444433321 3455
Q ss_pred HHHHHHHHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQL 270 (473)
Q Consensus 255 eL~deRK~LwrEe~kL 270 (473)
.|.|+|..|.+|..++
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 6777777776665543
No 122
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=52.27 E-value=36 Score=29.31 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 191 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi 191 (473)
.++..|.-=+.....-+.+++.|+.....|=.++|..|+..+
T Consensus 66 smeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 66 SVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334455566666677777777777777664
No 123
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=52.17 E-value=2.1e+02 Score=29.31 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=39.2
Q ss_pred cCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 60 ADRHQSNGAESANLAEAERQHLLQREAILEETVKHLRNERESHIQKEATLEGTVQQLQNECD 121 (473)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~q~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~ 121 (473)
+---||+|=+. ..-+...+..+...+..|+..+..+.+.-.....-++.|+....
T Consensus 15 fG~~CPTtCgl-------~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 15 FGSYCPTTCGI-------ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp CSCEEECSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcCCCcchH-------HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 44467777422 34567777888888888888888888888877777777776543
No 124
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.22 E-value=80 Score=24.12 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 245 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 245 e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
.+.+++.....-.+.......|..+|++.+++|+.+|+.+.
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555556666677778888888888888887654
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.74 E-value=12 Score=27.35 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhh
Q 011982 308 ALIDKLITENIELVEKVNDLSVKLDR 333 (473)
Q Consensus 308 ~~~~~l~~Ey~~L~~k~neL~~~~~~ 333 (473)
+.++.|..|+++|..|++.|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666554443
No 126
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=50.23 E-value=1.4e+02 Score=26.82 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 160 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ 160 (473)
+..+..+.....+.-..+-.....+..+|....+.++.+.+.+.-++.
T Consensus 19 L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~Fee 66 (170)
T 3l4q_C 19 LKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEE 66 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444443333
No 127
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.18 E-value=97 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 256 LEESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 256 L~deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
|..+.+.+..+...|...+..+..++.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 128
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=50.11 E-value=2.4e+02 Score=29.34 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 186 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 186 wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
+++.+-.+...|..++..++.+...-.....-+..+............
T Consensus 86 L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 86 LLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCC
Confidence 333343666777766666666655555555555555555444444333
No 129
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.52 E-value=91 Score=25.71 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 011982 153 ETIKQLRNQNDLHIQR 168 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~k 168 (473)
..+..|+.+++.|+..
T Consensus 75 ~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 75 EDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 130
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=48.63 E-value=14 Score=23.34 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=22.0
Q ss_pred HhhhhHHHHHHHHHHHHHhhhhhhhh
Q 011982 305 AAGALIDKLITENIELVEKVNDLSVK 330 (473)
Q Consensus 305 ~~~~~~~~l~~Ey~~L~~k~neL~~~ 330 (473)
++.+....+..||..|..||.+|..+
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999764
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.36 E-value=46 Score=34.01 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=17.8
Q ss_pred HHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHH
Q 011982 224 DKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR 260 (473)
Q Consensus 224 EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deR 260 (473)
+|..++.++..+++++..++..+..++..+.++.++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444433
No 132
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=47.30 E-value=76 Score=22.73 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
+..|..++.....|-+.+..|+..+..++.||..|+.-+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3457778888888888999999999999999888877543
No 133
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.28 E-value=1.1e+02 Score=24.77 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 252 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 289 (473)
Q Consensus 252 q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~ 289 (473)
-...|......+-.+...|...+..+...+..++..+.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.18 E-value=91 Score=32.32 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLS 282 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~ 282 (473)
.+.+.+..+...|...+..+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444433
No 135
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.73 E-value=1e+02 Score=32.33 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 263 LLQENRQLKENVSSLRSQL 281 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL 281 (473)
|..+...|...+..+..++
T Consensus 83 l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.64 E-value=89 Score=26.45 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRA 212 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~ 212 (473)
.||+.|++.-...+.++..++..+..|+..++
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 57888888887666666655555555554444
No 137
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.96 E-value=19 Score=34.66 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=9.7
Q ss_pred chhhhcccccccCCceeee
Q 011982 396 PPLVLSSSEAEYSGEIVQI 414 (473)
Q Consensus 396 a~~~~~~~~~~~~gritf~ 414 (473)
+..|+..+..+..|+|+-+
T Consensus 146 SlaVVevLp~E~~Gev~tv 164 (251)
T 3m9b_A 146 ALTVVEAGTFEAVGEISTL 164 (251)
T ss_dssp TCCBCCCCCCCCCSEEEEE
T ss_pred ccEEEEecCCCCcccEEEE
Confidence 3344455555555555544
No 138
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.26 E-value=69 Score=23.54 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 256 LEESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 256 L~deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
|+++...|-.+...|...+..|+.++..+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333
No 139
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=44.78 E-value=74 Score=25.21 Aligned_cols=57 Identities=23% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHhhhhHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELV 321 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~~~~~~~l~~Ey~~L~ 321 (473)
.|..++..-...+..|..+|+.|...-+-+ +|..-..+|.++++.+..+..-..-+-
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpa---eIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEANPA---EIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666777888888888888777666 677777788888887777666554443
No 140
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.98 E-value=1.2e+02 Score=24.18 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchH
Q 011982 184 EFWLQKEAALEQK--ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 243 (473)
Q Consensus 184 D~wLqkEi~Le~~--I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~ 243 (473)
+.|-+.+...+.. -......+..|+..+ ..+|.....+|..+...|+.+...|..|.
T Consensus 20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARAKEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 141
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=43.14 E-value=82 Score=21.96 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 84 REAILEETVKHLRNERESHIQKEATLEGTVQQL 116 (473)
Q Consensus 84 ~e~~~~~ei~qlE~E~~~l~q~~a~LE~kikeL 116 (473)
+.+-++..--|++.+-..+.+-++.+...+..|
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 333344333344433333333333333333333
No 142
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.09 E-value=70 Score=22.22 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 241 GLSVDITQLRMQVVELEESRNNLLQENRQLKEN 273 (473)
Q Consensus 241 ~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~ 273 (473)
+|+....++.....+|.+.-..|.+|..-|+..
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444444444444455555544443
No 143
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.69 E-value=2.9e+02 Score=28.24 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 187 LQKEAALEQKISQLRDESAALNMKRASLEERLKL 220 (473)
Q Consensus 187 LqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~ 220 (473)
++.+-.+...|..++..++.+...-.....-+..
T Consensus 30 ~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ 63 (411)
T 3ghg_C 30 STYQTKVDKDLQSLEDILHQVENKTSEVKQLIKA 63 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333355555555555555544444433333333
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.35 E-value=1.5e+02 Score=31.12 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 260 RNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 260 RK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
...|..+-..|...+..|..++..++..+
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 145
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.15 E-value=88 Score=23.31 Aligned_cols=9 Identities=11% Similarity=0.088 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 011982 218 LKLLEADKD 226 (473)
Q Consensus 218 ie~Le~EI~ 226 (473)
+..|+.++.
T Consensus 46 i~~L~~E~~ 54 (63)
T 1ci6_A 46 ADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 146
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.12 E-value=3.5e+02 Score=28.92 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.8
Q ss_pred cCCCCCCCc
Q 011982 60 ADRHQSNGA 68 (473)
Q Consensus 60 ~~~~~~~~~ 68 (473)
|...+.-|+
T Consensus 447 Y~~~~~kg~ 455 (592)
T 1f5n_A 447 YYEEPRKGI 455 (592)
T ss_dssp HHHSSCCCT
T ss_pred HHHhcCCcc
Confidence 443433454
No 147
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.02 E-value=46 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 204 SAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 204 l~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
...|+.+...|+.++..|..+++.+..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 148
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.57 E-value=1.4e+02 Score=24.75 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=7.2
Q ss_pred HHHhchHHHHHHHHHHHH
Q 011982 237 ETIAGLSVDITQLRMQVV 254 (473)
Q Consensus 237 e~L~~l~~e~~~Lk~q~~ 254 (473)
..++.++..+.+++.++.
T Consensus 82 ~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 149
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=40.43 E-value=3.5e+02 Score=28.40 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 011982 123 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 185 (473)
Q Consensus 123 ~~qk~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~ 185 (473)
+..+++..+.++..++...+... +.++..+.+.+.+...+.++....+.|-...|+.++.
T Consensus 7 yq~~la~yq~elarvqkana~ak---a~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAK---AAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444332 2334444444555555555555444444444444444
No 150
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.74 E-value=91 Score=21.49 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 011982 220 LLEADKDSWT 229 (473)
Q Consensus 220 ~Le~EI~~L~ 229 (473)
-|+.+|..|+
T Consensus 35 ylekeianlr 44 (49)
T 3he5_A 35 YLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 151
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.52 E-value=66 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 011982 311 DKLITENIELVEKVNDLS 328 (473)
Q Consensus 311 ~~l~~Ey~~L~~k~neL~ 328 (473)
+.-.+.|-.++..||++.
T Consensus 37 ~~~~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 37 KQTVQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 345677888889999985
No 152
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.44 E-value=96 Score=23.10 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSSDE 285 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae 285 (473)
...|..+-+.|..+...|...++.|+.++..+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 153
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=38.76 E-value=1.6e+02 Score=23.89 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 200 LRDESAALNMKRASLEERLKLLEA--D--KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 266 (473)
Q Consensus 200 l~~el~~L~~ei~~Leeeie~Le~--E--I~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrE 266 (473)
.+..+...+..++.++..+..+.. . -..|..-+...-+..-.|-+++..+-..++.+.++.-.+||-
T Consensus 17 fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~ 87 (93)
T 3t98_B 17 FEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433332 0 123444444444444455555566666666666666666653
No 154
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=38.29 E-value=2.1e+02 Score=25.23 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhchHHHHHHh--
Q 011982 232 ESVSKETIAGLSVDITQLRMQVVELEESRNNLL---QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAA-- 306 (473)
Q Consensus 232 i~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~Lw---rEe~kL~~~i~~L~~eL~~ae~~l~~ae~~~~~dMe~ql~~~-- 306 (473)
...+...+..+...+..+...+..|........ .....++..++.+..++...-..+... |+.|+..+...
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~----Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGK----LKTIELNIEQEEH 113 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhc
Q ss_pred -----------hhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011982 307 -----------GALIDKLITENIELVEKVNDLSVKLDRQ 334 (473)
Q Consensus 307 -----------~~~~~~l~~Ey~~L~~k~neL~~~~~~~ 334 (473)
......|...+.+++..|+.+...-...
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 155
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.07 E-value=1.3e+02 Score=30.69 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Q 011982 211 RASLEERLKLLEADKDSWTQMESVSKETIA 240 (473)
Q Consensus 211 i~~Leeeie~Le~EI~~L~~ei~~~~e~L~ 240 (473)
+-.+..+...+..+++.|+.+.+....+|.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 156
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.48 E-value=1.2e+02 Score=22.07 Aligned_cols=35 Identities=6% Similarity=0.073 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 113 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 147 (473)
Q Consensus 113 ikeL~eei~~~~qk~~~LE~eLkeLq~eI~~~eqk 147 (473)
+.+|..++..+..++..|...+..++..+.....+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555444433333
No 157
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.49 E-value=1.6e+02 Score=23.43 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
.|......+-.+...|...+..++..+..++..+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444
No 158
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.34 E-value=39 Score=32.42 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHH
Q 011982 221 LEADKD 226 (473)
Q Consensus 221 Le~EI~ 226 (473)
++.++.
T Consensus 29 ~~~e~~ 34 (251)
T 3m9b_A 29 LRREAA 34 (251)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 159
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.31 E-value=1.4e+02 Score=25.73 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=0.0
Q ss_pred chhchHHHHHH
Q 011982 295 EQKDFSTQIEA 305 (473)
Q Consensus 295 ~~~dMe~ql~~ 305 (473)
+++|+..||++
T Consensus 117 ql~dL~qqLq~ 127 (130)
T 3cl3_D 117 QLEDLKQQLQQ 127 (130)
T ss_dssp -----------
T ss_pred hHHHHHHHHHH
Confidence 44444444433
No 160
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=35.10 E-value=1.2e+02 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011982 181 SEKEFWLQKEAALEQKISQL 200 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l 200 (473)
+....-++++..+..=...+
T Consensus 28 ~~ir~eI~KElKiKeGaENL 47 (86)
T 1cxz_B 28 ERLRREIRKELKLKEGAENL 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHH
Confidence 33333344443333333333
No 161
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=34.37 E-value=1.4e+02 Score=24.22 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=5.6
Q ss_pred HHHHhchHHHHHHHH
Q 011982 236 KETIAGLSVDITQLR 250 (473)
Q Consensus 236 ~e~L~~l~~e~~~Lk 250 (473)
+..++.+..++..++
T Consensus 74 k~~v~~l~~~i~~lk 88 (95)
T 2c5k_T 74 EAQVKNIKQQLDALK 88 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 162
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.37 E-value=1.9e+02 Score=30.34 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 263 LLQENRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 263 LwrEe~kL~~~i~~L~~eL~~ae~~l 288 (473)
|..+-..|...+..|..++..++..+
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 163
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.49 E-value=1.7e+02 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
.++..+..++.++.....+...|=.---.|+-||...+.
T Consensus 16 ~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 16 EKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444
No 164
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.41 E-value=1.4e+02 Score=21.69 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 200 LRDESAALNMKRASLEERLKLLEA 223 (473)
Q Consensus 200 l~~el~~L~~ei~~Leeeie~Le~ 223 (473)
+...++.|...+..|..++..+..
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 165
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.40 E-value=1.9e+02 Score=29.86 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 261 NNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 261 K~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
..|..+-..|...+..|..++..++..+...
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666666666443
No 166
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=33.10 E-value=3.2e+02 Score=25.89 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQL 137 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeL 137 (473)
+.-++.-+.-.+.++...++.+..++.+|+.......++++.++..=..|
T Consensus 161 i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~L 210 (242)
T 3uux_B 161 LVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLL 210 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33344444444444444444444444444444444444444444433333
No 167
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.56 E-value=2.3e+02 Score=29.69 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 260 RNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 260 RK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
.+.+..+...|...+..+..++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 168
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.36 E-value=2.4e+02 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQ 230 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ 230 (473)
|...+..|+.+|..+..
T Consensus 66 L~~ki~eL~~kvA~le~ 82 (125)
T 2pms_C 66 LSDKIDELDAEIAKLED 82 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33333333333333333
No 169
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.29 E-value=1.5e+02 Score=30.31 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 206 ALNMKRASLEERLKLLEADKD 226 (473)
Q Consensus 206 ~L~~ei~~Leeeie~Le~EI~ 226 (473)
.+..+++.|+.+...+.++|.
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 170
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.14 E-value=4e+02 Score=26.70 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 253 VVELEESRNNLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 253 ~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
...|.+..+....+...|.+.+.+|.-++-.
T Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 221 RRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3333333333333333444444444444433
No 171
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.95 E-value=2.2e+02 Score=23.70 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 249 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 284 (473)
Q Consensus 249 Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~a 284 (473)
+...+..+....+.+......++..+..+...++.+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 172
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.70 E-value=58 Score=30.93 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=6.8
Q ss_pred cccCcchhHH
Q 011982 445 PLIGAPFRLV 454 (473)
Q Consensus 445 ~~~~~~f~~~ 454 (473)
|.++-||+|.
T Consensus 175 pRilyPakLs 184 (233)
T 2yko_A 175 PRISYPAKLS 184 (233)
T ss_dssp CEEETTTEEE
T ss_pred cccccccceE
Confidence 7777777663
No 173
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.21 E-value=1.2e+02 Score=21.39 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 192 ALEQKISQLRDESAALNMKRASLEERLKLLE 222 (473)
Q Consensus 192 ~Le~~I~~l~~el~~L~~ei~~Leeeie~Le 222 (473)
.++.-+..+......|...+..|+.+|..|+
T Consensus 21 klenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 174
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.60 E-value=1.6e+02 Score=21.70 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 011982 218 LKLLEADKDS 227 (473)
Q Consensus 218 ie~Le~EI~~ 227 (473)
|..|..++..
T Consensus 46 i~~L~~e~~~ 55 (63)
T 2wt7_A 46 IANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 175
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.52 E-value=1.5e+02 Score=22.87 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 156 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 195 (473)
Q Consensus 156 eeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~ 195 (473)
+.++++...+..+...+..++..+..|||-+..+--.++.
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455556666666666777777778888877776644433
No 176
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.24 E-value=1.3e+02 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011982 310 IDKLITENIELVEKVNDLSVKLDRQS 335 (473)
Q Consensus 310 ~~~l~~Ey~~L~~k~neL~~~~~~~~ 335 (473)
++..+..+..|++|.+.|...|++..
T Consensus 66 LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 66 LEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888777654
No 177
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.71 E-value=1.7e+02 Score=21.49 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 180 QSEKEFWLQKEAALEQKISQLR 201 (473)
Q Consensus 180 K~ERD~wLqkEi~Le~~I~~l~ 201 (473)
-.++..+++-...|+.+|...+
T Consensus 27 ~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 27 KKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444444444443
No 178
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.03 E-value=2.3e+02 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQL 116 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL 116 (473)
.+++..+...++-+-++.+...+..+.+
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~ 47 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRV 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4455566666666666666666666655
No 179
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.52 E-value=95 Score=31.80 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 262 NLLQENRQLKENVSSLRSQLSS 283 (473)
Q Consensus 262 ~LwrEe~kL~~~i~~L~~eL~~ 283 (473)
.+..+...|...+..+..++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 79 ELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433
No 180
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.03 E-value=2.7e+02 Score=23.36 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 011982 157 QLRNQNDLHIQR 168 (473)
Q Consensus 157 eLe~ei~~L~~k 168 (473)
+|+.++..+..+
T Consensus 26 eLq~Ei~~~E~Q 37 (113)
T 4fi5_A 26 ELQREINAHEGQ 37 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 181
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.88 E-value=1.5e+02 Score=22.95 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 195 QKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 195 ~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
..++.+...+.++..++..++..+.+++.+|..|.
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 44556666666666666666666666666666664
No 182
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.80 E-value=2.8e+02 Score=23.50 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 88 LEETVKHLRNERESHIQKEAT 108 (473)
Q Consensus 88 ~~~ei~qlE~E~~~l~q~~a~ 108 (473)
+..+..+|+.+...|.+....
T Consensus 7 V~s~l~~LEaeyq~L~~kE~q 27 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554443
No 183
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.60 E-value=1.4e+02 Score=30.60 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=5.1
Q ss_pred cCCcccccc
Q 011982 350 TALTSDTEP 358 (473)
Q Consensus 350 ~~l~~v~g~ 358 (473)
+.++.||||
T Consensus 108 F~FD~VF~~ 116 (412)
T 3u06_A 108 FSFDQVFHP 116 (412)
T ss_dssp EECSEEECT
T ss_pred EeeCeEcCC
Confidence 445666665
No 184
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.96 E-value=2.6e+02 Score=22.83 Aligned_cols=26 Identities=0% Similarity=0.027 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 205 AALNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 205 ~~L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
...-.++..+...|..+...+..+..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~ 33 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKR 33 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666655544
No 185
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.88 E-value=2.2e+02 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 175 NIANLQSEKEFWLQKEAALEQKISQLRDES 204 (473)
Q Consensus 175 rl~~LK~ERD~wLqkEi~Le~~I~~l~~el 204 (473)
.+...-.|+..+++-...|+.+|...+.-+
T Consensus 27 e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 27 RMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555666666656666666555443
No 186
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.48 E-value=1.6e+02 Score=22.21 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhchHHHH
Q 011982 200 LRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI 246 (473)
Q Consensus 200 l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~~~~e~L~~l~~e~ 246 (473)
....+..|..++..++..-.+++.++.....+-.+++.-|..++.++
T Consensus 10 NgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 10 NGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666677777777777777776666666666655443
No 187
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=25.25 E-value=1.1e+02 Score=28.94 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011982 210 KRASLEERLKLLEADKDSW 228 (473)
Q Consensus 210 ei~~Leeeie~Le~EI~~L 228 (473)
.++++++.|+.++..++++
T Consensus 7 Rvd~~EErIs~le~rleei 25 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEI 25 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 188
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.97 E-value=3.5e+02 Score=23.75 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011982 216 ERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 216 eeie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~a 291 (473)
..+.+|...|.-|...+......-..+..++..+-..-.++.+-++.-...-..-...++.|+.-++.++..|...
T Consensus 20 ~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 20 VSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666666666666666665556666666666666666666666666666666677777777777777777655
No 189
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=24.88 E-value=4.9e+02 Score=25.31 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 181 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 222 (473)
Q Consensus 181 ~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le 222 (473)
.++|.+-..-..+..+|..++..+....+.+.-.+++|...+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe 73 (302)
T 2y3a_B 32 REYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQE 73 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566666666666666666666665544
No 190
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.86 E-value=2.7e+02 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 207 LNMKRASLEERLKLLEADKDSWTQ 230 (473)
Q Consensus 207 L~~ei~~Leeeie~Le~EI~~L~~ 230 (473)
|..+...|..+++.|..++..+..
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 191
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.72 E-value=2.9e+02 Score=22.56 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=5.9
Q ss_pred HHhchHHHHHHHHHHH
Q 011982 238 TIAGLSVDITQLRMQV 253 (473)
Q Consensus 238 ~L~~l~~e~~~Lk~q~ 253 (473)
.++.++..+.+++.++
T Consensus 53 ~V~~lq~Ki~elkr~l 68 (96)
T 2ic9_A 53 AVSALETKLGELKREL 68 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 192
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.70 E-value=2.6e+02 Score=22.00 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=5.9
Q ss_pred HHHhchHHHHHHHHHH
Q 011982 237 ETIAGLSVDITQLRMQ 252 (473)
Q Consensus 237 e~L~~l~~e~~~Lk~q 252 (473)
..++.++..+.+++.+
T Consensus 52 ~~V~~lq~Ki~elkrq 67 (78)
T 2ic6_A 52 AAVSALETKLGELKRE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 193
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=24.61 E-value=3.3e+02 Score=23.25 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011982 270 LKENVSSLRSQLSSDESKKLQH 291 (473)
Q Consensus 270 L~~~i~~L~~eL~~ae~~l~~a 291 (473)
|...++.|...+..++..+..+
T Consensus 66 L~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 194
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=24.52 E-value=2.5e+02 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=7.6
Q ss_pred HHHHHHH-HHHHHHHHHHHH
Q 011982 185 FWLQKEA-ALEQKISQLRDE 203 (473)
Q Consensus 185 ~wLqkEi-~Le~~I~~l~~e 203 (473)
..-..+| .+..+|..+..-
T Consensus 17 nma~sEI~EID~Ki~nL~~m 36 (72)
T 2xu6_A 17 NSTMSEIRDIEVEVENLRQK 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 3334443 444444433333
No 195
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.47 E-value=1.3e+02 Score=20.94 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 011982 215 EERLKLLEADK 225 (473)
Q Consensus 215 eeeie~Le~EI 225 (473)
+.+|..|+..+
T Consensus 22 E~Ri~~LE~KL 32 (43)
T 2pnv_A 22 EKRIVTLETKL 32 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 196
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.38 E-value=3.9e+02 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 126 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 165 (473)
Q Consensus 126 k~~~LE~eLkeLq~eI~~~eqke~~le~eLeeLe~ei~~L 165 (473)
+...++..+..++.++.+..+.++..+..+.+++...+.+
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333334444444444444444444444444444444444
No 197
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.05 E-value=3.1e+02 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 89 EETVKHLRNERESHIQKEATLEGTVQQLQNEC 120 (473)
Q Consensus 89 ~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei 120 (473)
-..++.++.++..+.+.+.....++++.....
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555554444443
No 198
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.83 E-value=4e+02 Score=23.95 Aligned_cols=83 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 229 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~ 229 (473)
...+-+.+|+..+..++.... ....+.|...+..++..+......+ ......++..+..|+.+...+.
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~---------~~~~e~l~~~q~~lq~sl~~~~~~l---~~g~~~L~~~~~~Le~~~~~L~ 76 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDV---------DYVADKILTRQTVMQESIARFHEII---AIDKNHLRAVEQAIEQTMHSLN 76 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHTGGGGTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhHHHHHhchHH
Q 011982 230 QMESVSKETIAGLSV 244 (473)
Q Consensus 230 ~ei~~~~e~L~~l~~ 244 (473)
..+..+...+..++.
T Consensus 77 ~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 77 AQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 199
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.70 E-value=2.6e+02 Score=21.66 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 87 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN 141 (473)
Q Consensus 87 ~~~~ei~qlE~E~~~l~q~~a~LE~kikeL~eei~~~~qk~~~LE~eLkeLq~eI 141 (473)
.+...+.=..+|++.+-.+++.|...-+-+-.+++.+++....||..+..+..++
T Consensus 11 ml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 11 FLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555554443
No 200
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.69 E-value=1.8e+02 Score=19.97 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 011982 128 ATLEETIQQLQRQ 140 (473)
Q Consensus 128 ~~LE~eLkeLq~e 140 (473)
+-+++++..|++.
T Consensus 34 aylekeianlrkk 46 (49)
T 3he5_A 34 AYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 201
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.69 E-value=3.2e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 011982 153 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 194 (473)
Q Consensus 153 ~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le 194 (473)
.++...+.++..|.+++..++..+..+..|||-+..+--.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555666667777777776663333
No 202
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.62 E-value=2.4e+02 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011982 272 ENVSSLRSQLSSDESKKLQ 290 (473)
Q Consensus 272 ~~i~~L~~eL~~ae~~l~~ 290 (473)
..+..++..+..++..+..
T Consensus 136 ~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 136 ENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444433
No 203
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.98 E-value=3.5e+02 Score=22.98 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 011982 150 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKD 226 (473)
Q Consensus 150 ~le~eLeeLe~ei~~L~~kl~~le~rl~~LK~ERD~wLqkEi~Le~~I~~l~~el~~L~~ei~~Leeeie~L---e~EI~ 226 (473)
.+..++.+.-...+.++.....+..--...-.+--.|+.++ |...+..++.++..|...+.-.+..-... ..+|.
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~E--L~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~ 108 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNE--LRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHH
Q ss_pred HHHHHhHhHHHHHhchHHHH
Q 011982 227 SWTQMESVSKETIAGLSVDI 246 (473)
Q Consensus 227 ~L~~ei~~~~e~L~~l~~e~ 246 (473)
..+.-+...+.+|..++.++
T Consensus 109 ~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 109 ERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 204
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=22.93 E-value=4.7e+02 Score=24.45 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=18.5
Q ss_pred hhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 011982 296 QKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 329 (473)
Q Consensus 296 ~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~~ 329 (473)
++.+-.+.+.+...|..-...|..+...+..|..
T Consensus 254 ~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~ 287 (323)
T 3edv_A 254 VELLMNNHQGIKAEIDARNDSFTTCIELGKSLLA 287 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555566666666666666665555543
No 205
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.92 E-value=1.8e+02 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 118 NECDLYKEKVATLEETIQQLQRQ 140 (473)
Q Consensus 118 eei~~~~qk~~~LE~eLkeLq~e 140 (473)
++.+.+......|+.+...|+..
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333334444444444333
No 206
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.71 E-value=1.1e+02 Score=20.16 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 255 ELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 255 eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
+|.++-.+|..+...|..++.+|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 207
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.65 E-value=4.2e+02 Score=27.64 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011982 267 NRQLKENVSSLRSQLSSDESKK 288 (473)
Q Consensus 267 e~kL~~~i~~L~~eL~~ae~~l 288 (473)
-..|...+..|..++..++..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~ 134 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEER 134 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 208
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.45 E-value=1.7e+02 Score=19.28 Aligned_cols=26 Identities=31% Similarity=0.518 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 254 VELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 254 ~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
++|.++-.+|..+...|...+.+|+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44555555555555555555555543
No 209
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.32 E-value=3.5e+02 Score=22.67 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011982 214 LEERLKLLEADKDSWTQ 230 (473)
Q Consensus 214 Leeeie~Le~EI~~L~~ 230 (473)
.+.+++.|..++.+|..
T Consensus 16 ~e~e~~~l~~~~~el~~ 32 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQR 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33333333333333333
No 210
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.16 E-value=2.5e+02 Score=28.58 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--chhchHHHHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 011982 258 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS--EQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 328 (473)
Q Consensus 258 deRK~LwrEe~kL~~~i~~L~~eL~~ae~~l~~ae~~--~~~dMe~ql~~~~~~~~~l~~Ey~~L~~k~neL~ 328 (473)
|+-..||.+..++...++.|+.+...+...+...... ..+.+-.+...++..+..+..+..++.++++.+.
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555544444332110 2223334455555555555555555555554444
No 211
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.51 E-value=1.8e+02 Score=19.09 Aligned_cols=26 Identities=4% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 254 VELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 254 ~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
++|.|+..+|..+...|..++.+|+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555555555555544
No 212
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.36 E-value=3.3e+02 Score=22.12 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011982 184 EFWLQKEAALEQKISQLRDES 204 (473)
Q Consensus 184 D~wLqkEi~Le~~I~~l~~el 204 (473)
+.|+..-..+...|..++..+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v 28 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENV 28 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345544444444444433333
No 213
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.78 E-value=1.8e+02 Score=22.45 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhchHHHHHHHH
Q 011982 218 LKLLEADKDSWTQMESVSKETIAGLSVDITQLR 250 (473)
Q Consensus 218 ie~Le~EI~~L~~ei~~~~e~L~~l~~e~~~Lk 250 (473)
+..++..|..++.++...+..|..++..+..|+
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 344455555555555555555555555544443
No 214
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.69 E-value=3.5e+02 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011982 187 LQKEAALEQKISQLRDESAALNM 209 (473)
Q Consensus 187 LqkEi~Le~~I~~l~~el~~L~~ 209 (473)
++..+.|+..+..+..+...++.
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 215
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.63 E-value=1.9e+02 Score=19.06 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 254 VELEESRNNLLQENRQLKENVSSLRS 279 (473)
Q Consensus 254 ~eL~deRK~LwrEe~kL~~~i~~L~~ 279 (473)
++|.|+..+|..+...|..++.+|+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455555555555555555555443
No 216
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.56 E-value=2.2e+02 Score=20.85 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011982 194 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 233 (473)
Q Consensus 194 e~~I~~l~~el~~L~~ei~~Leeeie~Le~EI~~L~~ei~ 233 (473)
+..+..++...-+|-..+..|+..+.+.+.||.-|..-+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777778888888888888888888888877544
No 217
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.50 E-value=2.5e+02 Score=20.27 Aligned_cols=39 Identities=28% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 248 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 286 (473)
Q Consensus 248 ~Lk~q~~eL~deRK~LwrEe~kL~~~i~~L~~eL~~ae~ 286 (473)
+|-.|++.|..+-..|+||-..=.+.+++|+++-..+..
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 344444444444444444444444444444444444333
No 218
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.36 E-value=2.2e+02 Score=19.84 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011982 115 QLQNECDLYKEKVATLEETIQQLQ 138 (473)
Q Consensus 115 eL~eei~~~~qk~~~LE~eLkeLq 138 (473)
+++.+.+.+.+++..++..+..|.
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 219
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=20.27 E-value=5.3e+02 Score=24.01 Aligned_cols=15 Identities=7% Similarity=-0.310 Sum_probs=7.5
Q ss_pred CchhhhcccccccCC
Q 011982 395 PPPLVLSSSEAEYSG 409 (473)
Q Consensus 395 ~a~~~~~~~~~~~~g 409 (473)
+..-|..+....+.|
T Consensus 264 ~~~Di~~fi~~~~tg 278 (290)
T 3i2w_A 264 QQKDLKWWSNNHGIN 278 (290)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHcCCC
Confidence 333444555555555
No 220
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.11 E-value=2e+02 Score=19.18 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 011982 125 EKVATLEETIQQL 137 (473)
Q Consensus 125 qk~~~LE~eLkeL 137 (473)
.+...|+.+...|
T Consensus 15 ~~~~~Le~eV~RL 27 (36)
T 1kd8_B 15 SKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3333333333333
Done!