BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011983
(473 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/475 (86%), Positives = 443/475 (93%), Gaps = 3/475 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VS++GAVN +PL +NG+ VPS+ F G SLKKV+SK+ Q+ILS + KV +E
Sbjct: 1 MAAAVSSIGAVNR-VPLNLNGADAGPSVPSTAFFGSSLKKVNSKIIHQKILSGNLKVSAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDE+KQT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY+SQGL
Sbjct: 60 YDEQKQTDKDRWGGLAYDISDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYLSQGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN +DG YIAPAFMDKVVVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA+RARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRA 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS +G+E +GKRLVNSKE PPTFEQPKMTLDKLLEYG MLV+EQENVKRVQLADKYL E
Sbjct: 360 WISTIGVENVGKRLVNSKEAPPTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLKE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDANDDAI+NGSFYGKAAQQVKVPVPEGCTDP+A N+DPTARSDDGSC Y+F
Sbjct: 420 AALGDANDDAIQNGSFYGKAAQQVKVPVPEGCTDPSAENFDPTARSDDGSCLYEF 474
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/475 (86%), Positives = 445/475 (93%), Gaps = 3/475 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +ST+GAVN A PL +NGS + VPSS FLG SLKKVSSK++ R S +FKVV+E
Sbjct: 1 MAATISTLGAVNRA-PLNLNGSGTGASVPSSAFLGNSLKKVSSKIAHPRTSSGNFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQTS+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSYDYIS GL
Sbjct: 60 VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDNT+DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIFR+DN+PKED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++ VG+E IGK+LVNSKEGPPTFE+PKMTLDKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN+DAIK+GSFYGKAAQQV +PVPEGCTDP+A N+DPTARSDDGSC YQ
Sbjct: 420 AALGDANEDAIKSGSFYGKAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQI 474
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/477 (86%), Positives = 438/477 (91%), Gaps = 7/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+EAALGDANDDAIK G+FYG+ AQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 NEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/477 (86%), Positives = 437/477 (91%), Gaps = 7/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALR RVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+EAALGDANDDAIK G+FYG+ AQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 NEAALGDANDDAIKTGNFYGQGAQQVHVPVPEGCTDPTAENYDPTARSDDGSCTYKF 474
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/475 (83%), Positives = 433/475 (91%), Gaps = 4/475 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +STVGAVN PL +NGS S VP+S F G SLKK++S + S SFKVVSE
Sbjct: 1 MAATISTVGAVNRT-PLALNGSGAGSSVPTSAFFGSSLKKLNSP-RFSKFSSGSFKVVSE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDEEKQTS DRW GLAYD+SDDQQDITRGKGMVD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 59 YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGG
Sbjct: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIF+TD V ED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299 MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WI VG+E+IGK LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKY+SE
Sbjct: 359 WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALG+AN D+I+ G+FYGKAAQQV +PVPEGCTDP A N+DPTARSDDGSC Y+F
Sbjct: 419 AALGEANQDSIERGTFYGKAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYKF 473
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/473 (83%), Positives = 433/473 (91%), Gaps = 3/473 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
AALGDAN D+I+ G+FYGKAAQQV VPVPEGCTDP+AAN+DPTARSD+GSC Y
Sbjct: 420 AALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/473 (83%), Positives = 432/473 (91%), Gaps = 3/473 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGXSVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
AALGDAN D+I+ G+FYGKAAQQV VPVPEGCTDP+AAN+DPTARSD+GSC Y
Sbjct: 420 AALGDANVDSIERGTFYGKAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/475 (83%), Positives = 432/475 (90%), Gaps = 3/475 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
LR +L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 120 LRTYLENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 180 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDANDDAIK GSFYGKAAQQV VPVPEGCTD AANYDPTARSDDGSC Y
Sbjct: 420 AALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/477 (83%), Positives = 434/477 (90%), Gaps = 5/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA V+ VGA+N A LK+NGSS + +S F G SLKK S +S Q+ LS +FKV +
Sbjct: 1 MATSVTIVGAINMA-QLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFKVSAK 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+Y+EEKQTS+DRWAGLAYD SDDQQDITRGKG VD++FQAPM++GTHYAVMSSYDYIS
Sbjct: 60 IDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPMDAGTHYAVMSSYDYIST 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR ++DNT+DGLYIAPAFMDK+VVHITKNFLNLPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRM
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRM 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DR+GVC GIFRTD VPK+DIVK+VDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
R WIS +G+E IGKRLVNSKEGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEAALGDANDDAIK G+FYG+ AQQV +PV EGC DP+A NYDPTARSDDGSC Y F
Sbjct: 420 SEAALGDANDDAIKTGNFYGQGAQQVPLPVQEGCADPSAENYDPTARSDDGSCTYTF 476
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/479 (84%), Positives = 438/479 (91%), Gaps = 9/479 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 417 SEAALGDANDDAIKNGSFY-GKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEAALGDAN+DAIK G+FY G+AAQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 SEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/475 (83%), Positives = 429/475 (90%), Gaps = 3/475 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
LR +L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 120 LRTYLENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 180 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDANDDAIK GSFYGKAAQQV VPVPEGCTD AANYDPTARSDDGSC Y
Sbjct: 420 AALGDANDDAIKRGSFYGKAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/477 (82%), Positives = 433/477 (90%), Gaps = 7/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS-SKVSQQRILSKSFKVVS 59
MAA VST+GAVN A PL +N S VPSS F G SLKKV+ S+V +I S SFK+V+
Sbjct: 1 MAASVSTIGAVNRA-PLSLNSSEAGDSVPSSAFFGTSLKKVTASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT++DRW GLAYDISDDQQDITRGKGMVD+LFQAP E+GTHYAVMSS++Y+
Sbjct: 60 AEKEIDEQQQTNKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQETGTHYAVMSSFEYL 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
S GL+ +LDN +DG YIAPAFMDK+V HITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVFAKMGINPIMM AGELESGNAGEPAKLIRQRYREAADII KGKMCCLFINDLD GAG
Sbjct: 180 ELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGKMCCLFINDLDVGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTR+DR+GVC GIFRTDNVP+++IVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 415 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
YL+EAALGDAN DAIK G+FYGKAAQQVK+PVPEGCTDP A+N+DPTARSDDG+C Y
Sbjct: 420 YLNEAALGDANQDAIKRGTFYGKAAQQVKIPVPEGCTDPNASNFDPTARSDDGTCLY 476
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/477 (81%), Positives = 435/477 (91%), Gaps = 5/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISPGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSYEYLSQG 119
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELV 179
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 236
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC Y+F
Sbjct: 420 SEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/477 (82%), Positives = 434/477 (90%), Gaps = 7/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A PL +N S + VPSS F G SLKKV +S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNGA-PLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT +DRW GLAYD+SDDQQDITRGKG+VD+LFQAP ++GTHYA+MSSY+Y+
Sbjct: 60 AEKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYL 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
S GL+ +LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTR+DR+GVC+GIFRTDNVPK+DIVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 415 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
YL EAALGDAN D+I G+FYGKAAQQV +PVPEGCTDP A+N+DPTARSDDG+C Y
Sbjct: 420 YLKEAALGDANQDSINRGTFYGKAAQQVNIPVPEGCTDPNASNFDPTARSDDGTCLY 476
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/476 (82%), Positives = 436/476 (91%), Gaps = 6/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 235
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 356 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 416 LSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
LS+AALG+AN DAI+ G+FYG+AAQQVKVP+PEGCTDP AAN+DPTARSDDGSC+Y
Sbjct: 420 LSDAALGEANQDAIERGTFYGQAAQQVKVPIPEGCTDPNAANFDPTARSDDGSCSY 475
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/477 (81%), Positives = 435/477 (91%), Gaps = 5/477 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH ++SSY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQG 119
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 236
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIF++D + KEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG++ IGK+LVNS++GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC Y+F
Sbjct: 420 SEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCTYKF 476
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/476 (82%), Positives = 427/476 (89%), Gaps = 4/476 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
M A VS V AV+ PL +N S + VPSS F G SLKKV+S++ ++ S FK+V+
Sbjct: 1 MVASVSAVRAVSGT-PLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E +E KQT +DRW GLAYD SDDQQDITRGKGMVDT+FQAP +SGTHYAVMSSY+YIS G
Sbjct: 60 EINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTG 119
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDNT+DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQ ELV
Sbjct: 120 LRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELV 179
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMG 239
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 299
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFR DNVP+ED+VK+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 RMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KWI+ VGIE IGK+LVNSKEGPPTF+QPKM+L+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 KWIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN DAIK+GSFYGKAAQQV +P+PEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 420 GAALGDANQDAIKSGSFYGKAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/475 (81%), Positives = 427/475 (89%), Gaps = 7/475 (1%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILS-KSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG +LKK + + ++ S SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT++D+W GLA+DISDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN ++G YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDI+KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W S VG+E I K+LVNSKEGPPT EQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN+DAIK G+FYGKAAQQV +P+PEGCTDP A N+DPTARSDDGSCNY F
Sbjct: 420 AALGDANEDAIKRGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVF 474
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/473 (81%), Positives = 425/473 (89%), Gaps = 7/473 (1%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG SLKK + + S + SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQTS+D+W GLA+D+SDDQQDITRGKGMVDTLFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R + DN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W+ VG+E I K+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
AALGDAN+DAIK+G+FYGKAAQQV +P+PEGCTDP A N+DPTARSDDGSCNY
Sbjct: 420 AALGDANEDAIKSGTFYGKAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNY 472
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/476 (79%), Positives = 418/476 (87%), Gaps = 5/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS S + P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAASAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD YLS
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADTYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIDRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 416/476 (87%), Gaps = 5/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/476 (78%), Positives = 415/476 (87%), Gaps = 5/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/431 (85%), Positives = 401/431 (93%), Gaps = 5/431 (1%)
Query: 48 QRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESG 104
+++ S SFKV++ E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM G
Sbjct: 5 RQVPSGSFKVMAAEKEIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDG 64
Query: 105 THYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 162
THYAVMSSY+YISQGL+ +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGI
Sbjct: 65 THYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGI 124
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 222
WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC
Sbjct: 125 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 184
Query: 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 282
LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVT
Sbjct: 185 ALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVT 244
Query: 283 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 342
GNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVKLVDTFPGQSID
Sbjct: 245 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSID 304
Query: 343 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 402
FFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV E
Sbjct: 305 FFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAE 364
Query: 403 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTA 462
QENVKRVQLADKYLSEAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N+DPTA
Sbjct: 365 QENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTA 424
Query: 463 RSDDGSCNYQF 473
RSDDG+C Y+F
Sbjct: 425 RSDDGTCTYKF 435
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/476 (78%), Positives = 414/476 (86%), Gaps = 5/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/416 (87%), Positives = 392/416 (94%), Gaps = 2/416 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQG
Sbjct: 6 EIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQG 65
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
L+ +LDN +DG YIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 66 LKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 125
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMG
Sbjct: 126 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMG 185
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 186 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 245
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTR+DR+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 246 RMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 305
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KWIS+VG+ +GK+LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLS
Sbjct: 306 KWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLS 365
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
EAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N+DPTARSDDG+C YQF
Sbjct: 366 EAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADNFDPTARSDDGTCTYQF 421
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/436 (83%), Positives = 398/436 (91%), Gaps = 3/436 (0%)
Query: 41 VSSKVSQQRILSKSFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQA 99
V+ + R + + KV++ + DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQA
Sbjct: 1 VNPSLGHGRTSTGTLKVMAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQA 60
Query: 100 PMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVP 157
PM GTH V+SSY+YIS GLR +LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+P
Sbjct: 61 PMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIP 120
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+
Sbjct: 121 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR 180
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRV
Sbjct: 181 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRV 240
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 337
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFP
Sbjct: 241 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFP 300
Query: 338 GQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGR 397
GQSIDFFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG
Sbjct: 301 GQSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGN 360
Query: 398 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 457
MLVQEQENVKRVQLADKYLSEAALGDAN DAIK GSFYGKAAQQ VPVPEGCTD A N
Sbjct: 361 MLVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATN 420
Query: 458 YDPTARSDDGSCNYQF 473
+DPTARSDDGSC Y
Sbjct: 421 FDPTARSDDGSCLYTL 436
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/419 (86%), Positives = 390/419 (93%), Gaps = 2/419 (0%)
Query: 57 VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
+ ++ DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YI
Sbjct: 8 MAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYI 67
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
S GLR +LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQC
Sbjct: 68 STGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQC 127
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAG
Sbjct: 128 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAG 187
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 188 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 247
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 248 RDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDD 307
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADK
Sbjct: 308 EVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADK 367
Query: 415 YLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
YLSEAALGDAN DAIK GSFYGKAAQQ VPVPEGCTD A N+DPTARSDDGSC Y
Sbjct: 368 YLSEAALGDANQDAIKTGSFYGKAAQQANVPVPEGCTDRNATNFDPTARSDDGSCLYTL 426
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/438 (85%), Positives = 405/438 (92%), Gaps = 7/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 417 SEAALGDANDDAIKNGSF 434
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/439 (83%), Positives = 401/439 (91%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYGK 437
AALGDAN D+I+ G+FYG+
Sbjct: 420 AALGDANVDSIERGTFYGQ 438
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/448 (82%), Positives = 403/448 (89%), Gaps = 7/448 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV-KVP 445
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG+ AQQ +P
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLP 438
Query: 446 VPEGCTDPAAANYDPTARSDDGSCNYQF 473
VPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 439 VPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/484 (77%), Positives = 420/484 (86%), Gaps = 13/484 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS------SKVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S SK+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMSKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 168
SSY+YISQGLR ++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 289 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 349 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 409 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 468
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 469 CNYQ 472
C YQ
Sbjct: 480 CTYQ 483
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/438 (83%), Positives = 401/438 (91%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
LR +L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 120 LRTYLENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 180 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYG 436
AALGDANDDAIK GSFYG
Sbjct: 420 AALGDANDDAIKRGSFYG 437
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/421 (85%), Positives = 397/421 (94%), Gaps = 3/421 (0%)
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
SFKVV+EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY
Sbjct: 4 SFKVVAEYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSY 63
Query: 114 DYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+Y+SQGLR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKS
Sbjct: 64 EYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKS 123
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 230
FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 124 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 183
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 184 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 243
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 350
APLIRDGRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRAR
Sbjct: 244 APLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRAR 303
Query: 351 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 410
VYDDEVRKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQ
Sbjct: 304 VYDDEVRKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQ 363
Query: 411 LADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 470
LADKYLSEA+LG+AN D+I G+FYG+AAQQVKVPV EGCTDP AAN+DPTARSDDGSC
Sbjct: 364 LADKYLSEASLGEANQDSIDRGTFYGQAAQQVKVPVAEGCTDPNAANFDPTARSDDGSCT 423
Query: 471 Y 471
Y
Sbjct: 424 Y 424
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/452 (81%), Positives = 403/452 (89%), Gaps = 7/452 (1%)
Query: 28 VPSSVFLGKSLKK-VSSKVSQQRILSKS--FKVVS-EYDEEKQTSQDRWAGLAYDISDDQ 83
P+S FLGK LKK V+S V+ +K+ F V++ E DE KQT QDRW GLAYDISDDQ
Sbjct: 15 TPTS-FLGKKLKKQVTSAVNYHGKSTKANRFTVMAKEVDESKQTDQDRWKGLAYDISDDQ 73
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVV 141
QDITRGKG+VD+LFQAPM GTH AV+SS +YISQGLR DNT+ G YIAPAFMDK+V
Sbjct: 74 QDITRGKGIVDSLFQAPMGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLV 133
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP
Sbjct: 134 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT
Sbjct: 194 AKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPT 253
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 321
NVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+T
Sbjct: 254 NVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQT 313
Query: 322 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 381
DN+ E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IGK+LVNSK+GP +
Sbjct: 314 DNISDESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSSTGIENIGKKLVNSKDGPVS 373
Query: 382 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQ 441
FEQPKMT++KLLEYG MLVQEQ+NVKRVQLADKY+SEAALGDAN DA+K GSFYGK AQQ
Sbjct: 374 FEQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYMSEAALGDANSDAMKTGSFYGKGAQQ 433
Query: 442 VKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+PVPEGCTD A NYDPTARSDDGSC Y F
Sbjct: 434 GNLPVPEGCTDRNAENYDPTARSDDGSCLYTF 465
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/438 (83%), Positives = 404/438 (92%), Gaps = 4/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSS-RFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
WI+ +G++ +GKRLVNSKEGPP+FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVDTVGKRLVNSKEGPPSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYLN 419
Query: 418 EAALGDANDDAIKNGSFY 435
EAALGDAN+DAIK+GSF+
Sbjct: 420 EAALGDANEDAIKSGSFF 437
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/484 (77%), Positives = 419/484 (86%), Gaps = 13/484 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 168
SSY+YISQGLR ++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 289 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 349 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 409 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 468
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 469 CNYQ 472
C YQ
Sbjct: 480 CTYQ 483
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/477 (75%), Positives = 411/477 (86%), Gaps = 4/477 (0%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
R DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEAALGDAN+D+IK G+FYG+AAQ V +PVPEGCTDP AANYDPTARSD+GSC Y+F
Sbjct: 421 SEAALGDANEDSIKRGTFYGQAAQHVNLPVPEGCTDPRAANYDPTARSDNGSCEYEF 477
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/484 (77%), Positives = 418/484 (86%), Gaps = 13/484 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTGGHRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 168
SSY+YISQGLR ++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 289 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 349 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 409 VQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGS 468
VQLADKYL EAALGDAN+DAIKNG+FYG+ AQ + VPEGCTDP A+N+DPTARSDDG+
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYGQGAQSGNLKVPEGCTDPQASNFDPTARSDDGT 479
Query: 469 CNYQ 472
C YQ
Sbjct: 480 CTYQ 483
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/439 (83%), Positives = 398/439 (90%), Gaps = 6/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQ-RILSKSFKVVS 59
MAA VST+GAVN A PL +NGS + PSS F+G SLKKVS++ + + SFK+V+
Sbjct: 1 MAAAVSTIGAVNRA-PLSLNGSGAGASAPSSAFMGNSLKKVSARFNNNGKAPVGSFKIVA 59
Query: 60 --EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS 117
E DE+ QT QDRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YIS
Sbjct: 60 AKEIDEDTQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYIS 119
Query: 118 QGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
QGLR LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCE
Sbjct: 120 QGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCE 179
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR
Sbjct: 180 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 239
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 299
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355
DGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 356 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
VRKWI EVG+ +GK+LVNS+EGPP+FEQP MT++KLLEYG MLV EQENVKRVQLADKY
Sbjct: 360 VRKWIGEVGVNSVGKKLVNSREGPPSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKY 419
Query: 416 LSEAALGDANDDAIKNGSF 434
LSEAALG+ANDDAIK G+F
Sbjct: 420 LSEAALGNANDDAIKRGAF 438
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/438 (83%), Positives = 398/438 (90%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
LR +L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 120 LRTYLENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 180 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYG 436
AALGDANDDAIK GSFYG
Sbjct: 420 AALGDANDDAIKRGSFYG 437
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/475 (75%), Positives = 405/475 (85%), Gaps = 5/475 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +DN L LYIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATL+NIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLLNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVYDDEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRK 357
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/439 (81%), Positives = 398/439 (90%), Gaps = 5/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
S GLR LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 STGLRQLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+
Sbjct: 180 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRL 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
Query: 417 SEAALGDANDDAIKNGSFY 435
+EAALG+AN+DAIK+GSF+
Sbjct: 420 NEAALGNANEDAIKSGSFF 438
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/481 (76%), Positives = 405/481 (84%), Gaps = 27/481 (5%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFK---- 56
AA STVGA + P+S FLG LKK V+S V+ KSFK
Sbjct: 3 AAFSSTVGAP--------------ASTPTS-FLGNKLKKQVTSAVNYH---GKSFKANRF 44
Query: 57 --VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
+ + DE KQT D+W GLAYDISDDQQDITRGKG+VD+LFQAPM GTH AV+SSY+
Sbjct: 45 TVMAKDIDEGKQTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYE 104
Query: 115 YISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
Y+SQGL+ DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSF
Sbjct: 105 YVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 164
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAG
Sbjct: 165 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAG 224
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI VTGNDFSTLYAP
Sbjct: 225 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIXVTGNDFSTLYAP 284
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
LI DGRMEKFYWAPTREDRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 285 LIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 344
Query: 353 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 412
DDEVRKW+S GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLA
Sbjct: 345 DDEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 404
Query: 413 DKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQ 472
D Y+S+AALGDAN DA+K GSFYGK AQQ +PVPEGCTD A N+DPTARSDDGSC Y
Sbjct: 405 DTYMSQAALGDANKDAMKTGSFYGKGAQQGTLPVPEGCTDRDAKNFDPTARSDDGSCLYT 464
Query: 473 F 473
F
Sbjct: 465 F 465
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/475 (75%), Positives = 403/475 (84%), Gaps = 5/475 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/442 (81%), Positives = 401/442 (90%), Gaps = 8/442 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV +S+V ++ SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIASRVPNSKVSGGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQ 173
Y+S GLR +LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQ
Sbjct: 120 YLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQ 179
Query: 174 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233
CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGA
Sbjct: 180 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGA 239
Query: 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293
GR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPL
Sbjct: 240 GRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 299
Query: 294 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYD 353
IRDGRMEKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVYD
Sbjct: 300 IRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYD 359
Query: 354 DEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLAD 413
DEVRKWIS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLAD
Sbjct: 360 DEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLAD 419
Query: 414 KYLSEAALGDANDDAIKNGSFY 435
KYL+EAALG+AN+DAI+ G+F+
Sbjct: 420 KYLNEAALGNANEDAIQRGTFF 441
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/446 (79%), Positives = 395/446 (88%), Gaps = 5/446 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVP 447
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVP
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP 438
Query: 448 EGCTDPAAANYDPTARSDDGSCNYQF 473
EGCTD A NYDPTARSDDGSC Y F
Sbjct: 439 EGCTDQNAKNYDPTARSDDGSCLYTF 464
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/442 (81%), Positives = 400/442 (90%), Gaps = 8/442 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS PSS F G SLKKV S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLR-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQ 173
Y+S GLR +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQ
Sbjct: 120 YLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQ 179
Query: 174 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233
CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGA
Sbjct: 180 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGA 239
Query: 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293
GR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPL
Sbjct: 240 GRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 299
Query: 294 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYD 353
IRDGRMEKFYWAPTR+DRIGVC+GIFRTD++P++D+VK+VDTFPGQSIDFFGALRARVYD
Sbjct: 300 IRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYD 359
Query: 354 DEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLAD 413
DEVRKWIS VG++ IGK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLAD
Sbjct: 360 DEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLAD 419
Query: 414 KYLSEAALGDANDDAIKNGSFY 435
KYL+EAALG+AN+DAI G+F+
Sbjct: 420 KYLNEAALGNANEDAINRGTFF 441
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/439 (82%), Positives = 400/439 (91%), Gaps = 6/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 235
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIR 299
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 356 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 416 LSEAALGDANDDAIKNGSF 434
LS+AALG+AN DAI+ G+F
Sbjct: 420 LSDAALGEANQDAIERGTF 438
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/476 (76%), Positives = 405/476 (85%), Gaps = 6/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILG GGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGSRGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGE KLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLY PLI DG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYGPLILDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKF PTREDRIGV GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 357
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 358 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 417
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK A +V +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 418 QAALGDANADAIGRGTFYGKGAHEVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 473
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/409 (85%), Positives = 374/409 (91%), Gaps = 6/409 (1%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH-- 122
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLRH
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
INPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLDAGAGRMGGTTQY 237
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 363 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 422
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 423 DANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
DANDD YGKAAQ V+VPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 418 DANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/435 (81%), Positives = 391/435 (89%), Gaps = 4/435 (0%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS-EYDE 63
VS+VGAVN P ++GS + V S FLG SLK V+ + R + + KV++ + DE
Sbjct: 2 VSSVGAVNRVRP-SLHGSGSGASVTRSGFLGTSLKTVNPSLGHGRTSTGTLKVMAADLDE 60
Query: 64 EKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR-- 121
KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YIS GLR
Sbjct: 61 SKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSF 120
Query: 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 181
+LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQCELVFAKM
Sbjct: 121 NLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQCELVFAKM 180
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 241
GINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGRMGGTTQ
Sbjct: 181 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQ 240
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
YTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 241 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRMEK 300
Query: 302 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
FYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDDEVRKWI+
Sbjct: 301 FYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIA 360
Query: 362 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 421
E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADKYLSEAAL
Sbjct: 361 EIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAAL 420
Query: 422 GDANDDAIKNGSFYG 436
GDAN DAIK GSFYG
Sbjct: 421 GDANQDAIKTGSFYG 435
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/409 (85%), Positives = 373/409 (91%), Gaps = 6/409 (1%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH-- 122
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLRH
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
INPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDL AGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLYAGAGRMGGTTQY 237
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 363 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 422
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 423 DANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
DANDD YGKAAQ V+VPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct: 418 DANDD----DDLYGKAAQHVRVPVPEGCTDPKAGNFDPTARSDDGSCVY 462
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/438 (81%), Positives = 396/438 (90%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R + DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYG 436
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/436 (82%), Positives = 398/436 (91%), Gaps = 6/436 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGYYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 235
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355
DGRMEKFYWAPTR+DRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTRDDRIGVCIGIFKTDNVPQDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 356 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPAMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 416 LSEAALGDANDDAIKN 431
LS+AALG+AN DAI++
Sbjct: 420 LSDAALGEANQDAIES 435
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/436 (81%), Positives = 395/436 (90%), Gaps = 8/436 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV + RI++ K E
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIA----SRIVAVEEK--KE 53
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 54 IEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGL 113
Query: 121 R-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
R +LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 114 RQYLDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 173
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR+GGT
Sbjct: 174 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGGT 233
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 234 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 293
Query: 300 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
EKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 294 EKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 353
Query: 360 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
IS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLADKYL+EA
Sbjct: 354 ISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNEA 413
Query: 420 ALGDANDDAIKNGSFY 435
ALG+AN+DAI+ G+F+
Sbjct: 414 ALGNANEDAIQRGTFF 429
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/486 (75%), Positives = 406/486 (83%), Gaps = 30/486 (6%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGA N L L + G+ P+S F SLK V SK++ QR+L+++ K+ +
Sbjct: 1 MAASVSTVGAGNRGL-LNLKGAGSGPSWPTSAFFDNSLKTVLGSKITNQRLLTRNLKLAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYD+EKQ S+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY S+G
Sbjct: 60 EYDKEKQPSKDKWKGLAFDTSDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYTSKG 119
Query: 120 LRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR LDN +DG YIA +FMDK+VVHITKNFL LPN+K KGQGKSFQCELV
Sbjct: 120 LRQYKLDNNMDGFYIASSFMDKLVVHITKNFLQLPNIKA--------SKGQGKSFQCELV 171
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 236
FAKMGINP++MSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 172 FAKMGINPVVMSAGELESGNAGEPAKLIRQRYREAADIIKKRGKMCCLFINDLDAGAGRF 231
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 232 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 291
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC+GIF +DNVP+EDIVKLV+TF GQSIDFFGALRAR YDDEV
Sbjct: 292 GRMEKFYWAPTREDRIGVCTGIFGSDNVPREDIVKLVNTFHGQSIDFFGALRARAYDDEV 351
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG+E +GKRLVNSKEGPP EQPKMTL+KLLEYG MLV EQENVKRV+L+DKYL
Sbjct: 352 RKWISGVGVENVGKRLVNSKEGPPILEQPKMTLEKLLEYGNMLVLEQENVKRVRLSDKYL 411
Query: 417 SEAALGDANDDAIKNGSFY-------------GKAAQQVKVPVPEGCTDPAAANYDPTAR 463
EAALGDAN+DA+KNGSFY KAAQQV +PVPE CT+ A TAR
Sbjct: 412 KEAALGDANEDAMKNGSFYEEIIKLLYNFLDTSKAAQQVNLPVPEDCTNSLAE----TAR 467
Query: 464 SDDGSC 469
SDDGSC
Sbjct: 468 SDDGSC 473
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/436 (81%), Positives = 387/436 (88%), Gaps = 9/436 (2%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS---E 60
+ +GA N PL SS + VPSS FLG SLKK V+S+ + +FK+ + E
Sbjct: 3 TAAIGATFNRTPL----SSGVAAVPSSSFLGTSLKKIVNSRHAVNNNKFSTFKIFAAEKE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E KQT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAP +SGTH+AVMSSY+YIS GL
Sbjct: 59 IEETKQTDKDRWRGLAYDMSDDQQDITRGKGMVDSLFQAPQDSGTHFAVMSSYEYISTGL 118
Query: 121 R-HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
R +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVFA
Sbjct: 119 RTYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFA 178
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
KMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 179 KMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 238
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 239 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 298
Query: 300 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
EKFYWAPTR+DRIGVC GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 299 EKFYWAPTRDDRIGVCIGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 358
Query: 360 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
I EVG+E IGK+LVNS+EGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLAD YL A
Sbjct: 359 IGEVGVETIGKKLVNSREGPPTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYLDSA 418
Query: 420 ALGDANDDAIKNGSFY 435
ALGDAN DA++ G F+
Sbjct: 419 ALGDANKDAMETGKFF 434
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/475 (75%), Positives = 400/475 (84%), Gaps = 18/475 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
+A V+T A N+ L N +++ L SS+ KK + + I+ ++ V+
Sbjct: 12 VAVPVTTSTAANSFL--GSNNNNKQKLTVSSI----RKKKQHQQGGRGLIIIRAMAAVNK 65
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE KQT QDRW GLAYD SDDQQDITRGKGM+D+LFQAPM GTH AV+SSYDYISQ
Sbjct: 66 QEVDETKQTEQDRWRGLAYDTSDDQQDITRGKGMIDSLFQAPMGDGTHVAVLSSYDYISQ 125
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GLR NT+DG YIAPAFMDK+V+HI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 126 GLRQY-NTMDGYYIAPAFMDKLVLHIAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 184
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+I KGKM CLFINDLDAGAGRMGG
Sbjct: 185 AKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRMGG 244
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMY++ +NPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 245 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYSKVDNPRVPIIVTGNDFSTLYAPLIRDGR 304
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+KFYWAPTR+DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEVR+
Sbjct: 305 MDKFYWAPTRDDRIGVCKGIFRTDGVPDEHVVQLVDAFPGQSIDFFGALRARVYDDEVRR 364
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++E G+E I +RLVNSKE PPTFEQP+MTLDKL+EYGRML +EQENVKRVQLADKYL+E
Sbjct: 365 WVAETGVENIARRLVNSKEAPPTFEQPRMTLDKLMEYGRMLEEEQENVKRVQLADKYLTE 424
Query: 419 AALGDANDDAIKNGSFYGKAAQQVK--VPVPEGCTDPAAANYDPTARSDDGSCNY 471
AALGDAND FYGKAAQQV VPVPEGCTDP A N+DP ARSDDGSC Y
Sbjct: 425 AALGDAND-------FYGKAAQQVHVPVPVPEGCTDPRAGNFDPVARSDDGSCVY 472
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/472 (75%), Positives = 396/472 (83%), Gaps = 6/472 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+LADKYL+E
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLADKYLNE 416
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 470
AALGDAN+D ++ + A V + T A D + GS N
Sbjct: 417 AALGDANEDDVQFKTSQEAALDVANEDVVQSETSEEVALEDANEDVESGSSN 468
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/441 (80%), Positives = 389/441 (88%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
SQGLR +LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 415 YLSEAALGDANDDAIKNGSFY 435
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/424 (80%), Positives = 380/424 (89%), Gaps = 2/424 (0%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLA DISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 3 ANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 62
Query: 112 SYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 169
SY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQG
Sbjct: 63 SYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQG 122
Query: 170 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 229
KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 123 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 182
Query: 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+ ENPRVPI+VTGNDFSTL
Sbjct: 183 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTL 242
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 243 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQSIDFFGALRA 302
Query: 350 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRV 409
RVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRV
Sbjct: 303 RVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRV 362
Query: 410 QLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSC 469
QLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVPEGCTD A NYDPTARSDDGSC
Sbjct: 363 QLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSC 422
Query: 470 NYQF 473
Y F
Sbjct: 423 LYTF 426
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/439 (79%), Positives = 389/439 (88%), Gaps = 5/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS + + VP++ FLGK + S + S SFKVV+
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKVVTTSRFAQSNKKSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD+SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDMSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD+YL+
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADQYLN 418
Query: 418 EAALGDANDDAIKNGSFYG 436
EAALGDAN DAI G+FYG
Sbjct: 419 EAALGDANADAIDRGTFYG 437
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/444 (78%), Positives = 388/444 (87%), Gaps = 5/444 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQ 441
+AALGDAN DAI G+FYGK ++
Sbjct: 419 QAALGDANADAIGRGTFYGKTEEK 442
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/440 (80%), Positives = 388/440 (88%), Gaps = 6/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV--SQQRILSKSFKVV 58
MA VSTVGA A PL +NGSS + VP+S FLG SLKK +S S R S + K
Sbjct: 1 MATAVSTVGAATKA-PLNLNGSSAGASVPTSAFLGSSLKKHTSVRFPSSSRASSMTVKA- 58
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
++Y+E KQ++ DRWA LA DISDDQ DI RGKGMVD+LFQAPM+SGTH V SS +Y SQ
Sbjct: 59 ADYEESKQSNTDRWAHLATDISDDQLDIRRGKGMVDSLFQAPMDSGTHVPVQSSLEYESQ 118
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR ++DN L YIAP+FMDK+VVHITKN+LNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLRKYNIDNMLGNFYIAPSFMDKIVVHITKNYLNLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC LFINDLDAGAGRM
Sbjct: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFINDLDAGAGRM 238
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 298
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGV +GIFRTDNVP++ +VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVATGIFRTDNVPEDHVVKLVDTFPGQSIDFFGALRARVYDDEV 358
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+SEVGI+ +GK+LVNS++GPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 359 RKWVSEVGIDAVGKKLVNSRDGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 418
Query: 417 SEAALGDANDDAIKNGSFYG 436
SEAALGDAN DAI +G+F+G
Sbjct: 419 SEAALGDANKDAIASGAFFG 438
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/439 (80%), Positives = 399/439 (90%), Gaps = 5/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS 59
MAA VSTVGAVN PL +NGS + VPSS F G +LKKV+S++ + ++ S SFKVV+
Sbjct: 1 MAASVSTVGAVNRT-PLNLNGSGGGASVPSSAFFGSNLKKVASRLPNTTKVSSGSFKVVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E D+ KQT +DRW G AYDISDDQQDITRGKGMVD+LFQAP ++GTHYAV+SSY+YIS
Sbjct: 60 AEIDDSKQTDKDRWKGPAYDISDDQQDITRGKGMVDSLFQAPSDAGTHYAVLSSYEYIST 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLREYNLDNNVDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKL+R+RYREAADII+KGKMC LFIN LDAGAGR+
Sbjct: 180 VFAKMGINPIMMSAGELESGNAGEPAKLMRRRYREAADIIRKGKMCALFINGLDAGAGRL 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EE+PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEESPRVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DR+GVC GIFRTDN+ ++D+VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCKGIFRTDNITEDDVVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWI +G+E +GK+LVNSKEGPPTFEQP MTL KLLEYG MLVQEQENVKRVQLA++Y+
Sbjct: 360 RKWIGGIGVEGVGKKLVNSKEGPPTFEQPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYM 419
Query: 417 SEAALGDANDDAIKNGSFY 435
SEAALG+AN+DAIK+GSF+
Sbjct: 420 SEAALGNANEDAIKSGSFF 438
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/440 (79%), Positives = 386/440 (87%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGK 437
+AALGDAN DAI G+FYGK
Sbjct: 419 QAALGDANADAIGRGTFYGK 438
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/440 (80%), Positives = 388/440 (88%), Gaps = 6/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVV 58
MAA VSTVGA+N A PL +NGS + + VP++ FLGK S S + + SFKVV
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKAVTASRFTQSNNKKSNGSFKVV 59
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+ E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH AV+SSY+YISQ
Sbjct: 60 A-VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHNAVLSSYEYISQ 118
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GL+ +LDN +DGL+IAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLKQYNLDNMMDGLFIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
V AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRM
Sbjct: 179 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRM 238
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 298
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNV EDIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 358
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RK++ +G+E+IGKRLVNS+EGPP FEQP MTL+KL+EYG MLV EQENVKRVQLAD+YL
Sbjct: 359 RKFVEGLGVEKIGKRLVNSREGPPVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYL 418
Query: 417 SEAALGDANDDAIKNGSFYG 436
+EAALGDAN DAI G+FYG
Sbjct: 419 NEAALGDANADAIGRGTFYG 438
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/440 (77%), Positives = 388/440 (88%), Gaps = 7/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA N A PL +N S + VPS+ F GKSLKKV K +S ++ ++S ++V+
Sbjct: 1 MAASVSTIGAANKA-PLSLNNSVSGTSVPSTAFFGKSLKKVYGKGISSPKVSNRSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE+KQT DRW GL D+SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+
Sbjct: 60 EEKEIDEKKQTDGDRWKGLGTDVSDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYL 119
Query: 117 SQGLRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
SQGL+ +DN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFLQLPNIKIPLILGVWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGTMCCLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP E +VK+VD+FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKW+S GIE +G++L+NS++GPPTFEQPKMTL+KLLEYG MLV+EQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAVGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVKEQENVKRVQLAET 419
Query: 415 YLSEAALGDANDDAIKNGSF 434
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGAF 439
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/438 (80%), Positives = 386/438 (88%), Gaps = 7/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +PL +NGS VPSS F+G SLKK S S ++ S SFKVV+E
Sbjct: 1 MAAAVSTIGAVNR-VPLNLNGSGGGGAVPSSSFMGSSLKKAMSNPSG-KVSSGSFKVVAE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+K + DRW GL D+SDDQQDI RGKGMVD+LFQAP GTH A+M+SY+YISQG
Sbjct: 59 --AKKPSPGDRWGGLIEDVSDDQQDIVRGKGMVDSLFQAPSGMGTHDAIMNSYEYISQGQ 116
Query: 121 R---HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
+ HLDNTLDGLYIAPAFMDK+VVH++KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 117 KTYDHLDNTLDGLYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELV 176
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 177 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 236
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 237 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 296
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD VP E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 297 RMEKFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVR 356
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KW+S VG+E IG RLVNS+EGPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 357 KWVSGVGVENIGTRLVNSREGPPKFEQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLK 416
Query: 418 EAALGDANDDAIKNGSFY 435
+AALGDAN DAI+ G+F+
Sbjct: 417 DAALGDANKDAIERGTFF 434
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/444 (79%), Positives = 393/444 (88%), Gaps = 11/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRH---LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
+Y+SQG + +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
SFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 350
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 351 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 410
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L+KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLEKLLEYGGMLVQEQENVKRVQ 419
Query: 411 LADKYLSEAALGDANDDAIKNGSF 434
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/444 (79%), Positives = 392/444 (88%), Gaps = 11/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRH---LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
+Y+SQG + +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
SFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 350
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 351 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 410
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLXKLLEYGGMLVQEQENVKRVQ 419
Query: 411 LADKYLSEAALGDANDDAIKNGSF 434
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/412 (83%), Positives = 374/412 (90%), Gaps = 6/412 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 430
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/441 (79%), Positives = 393/441 (89%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
S GLR + DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 415 YLSEAALGDANDDAIKNGSFY 435
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/440 (77%), Positives = 384/440 (87%), Gaps = 7/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
SQGLR ++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 415 YLSEAALGDANDDAIKNGSF 434
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/437 (78%), Positives = 385/437 (88%), Gaps = 5/437 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VSTVGAVN ++PL ++GSS + P+S F G +LKKV+ ++ R+ + SFKV++
Sbjct: 1 MATAVSTVGAVN-SVPLSLHGSSSGAPAPTSAFFGSNLKKVNPSLTHGRVQTGSFKVMAV 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE KQT DRW L D SDDQQDI RGKG+VD LFQAPM GTH AV++SY+YISQG
Sbjct: 60 DLDETKQTKTDRWQ-LHKDTSDDQQDIVRGKGLVDPLFQAPMGDGTHEAVLNSYEYISQG 118
Query: 120 LRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR ++N +DG YIAP FMDK+VVHITKN+++LPN+KVPLILGIWGGKGQGK+FQCELV
Sbjct: 119 LRDYGMENKMDGFYIAPEFMDKLVVHITKNYMDLPNIKVPLILGIWGGKGQGKTFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMCCLFINDLDAGAGRMG
Sbjct: 179 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTR DRIGVC+GIF TDNV +DIVKLVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTRSDRIGVCTGIFMTDNVAVQDIVKLVDAFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KWIS++G++++GKRLVNS EG PTFEQPKMTL+KL++YG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISDIGVDKVGKRLVNSAEGAPTFEQPKMTLEKLMDYGNMLVQEQENVKRVQLADKYLS 418
Query: 418 EAALGDANDDAIKNGSF 434
EAALGDAN DAIK G F
Sbjct: 419 EAALGDANVDAIKTGKF 435
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/429 (81%), Positives = 372/429 (86%), Gaps = 22/429 (5%)
Query: 28 VPSSVFLGKSLKK----------------VSSKVSQQRILSKSFKVVSEYDEEKQTSQDR 71
PSS FLGK LKK SS+ S R+++ + K V DE KQT DR
Sbjct: 15 TPSS-FLGKKLKKQSNNCFSNNGGSSKTIKSSRPSLVRVMAAANKDV---DEGKQTDGDR 70
Query: 72 WAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDG 129
W GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSY+YISQGLR DNT+DG
Sbjct: 71 WRGLAYDISDDQQDITRGKGIVDALFQAPMGDGTHEAVLSSYEYISQGLRQYDFDNTMDG 130
Query: 130 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189
LYIAPAFMDK+VVH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 131 LYIAPAFMDKLVVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 190 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIAD PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct: 251 NATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEVRKW+ E+G+E I
Sbjct: 311 DRIGVCKGIFRTDGVPDEAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWVGEIGVENIS 370
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
KRLVNSKEGPP FEQPKMT+ KL+EYG MLVQEQENVKRVQLADKYLSEAALG+ANDDA+
Sbjct: 371 KRLVNSKEGPPKFEQPKMTISKLMEYGHMLVQEQENVKRVQLADKYLSEAALGEANDDAM 430
Query: 430 KNGSFYGKA 438
K GSFY KA
Sbjct: 431 KTGSFYAKA 439
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/410 (83%), Positives = 373/410 (90%), Gaps = 6/410 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/417 (80%), Positives = 370/417 (88%), Gaps = 11/417 (2%)
Query: 31 SVFLGKSLKKVSSKVS--------QQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
+ FLGK +KK + ++ R++ ++ E DE KQT DRW GLAYDISDD
Sbjct: 17 TTFLGKKVKKQAGALNYYHGGNKINNRVV-RAMAAKKELDEGKQTDADRWKGLAYDISDD 75
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKV 140
QQDITRGKG+VD+LFQAPM GTH A++SSY+YISQGLR DNT+DGLYIAPAFMDK+
Sbjct: 76 QQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKL 135
Query: 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200
+VH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE
Sbjct: 136 IVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 195
Query: 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 260
PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD P
Sbjct: 196 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAP 255
Query: 261 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
TNVQ PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 256 TNVQFPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 315
Query: 321 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 380
TDNVP E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPP
Sbjct: 316 TDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPP 375
Query: 381 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 437
TF+QPKMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+ G+FYGK
Sbjct: 376 TFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMATGAFYGK 432
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/410 (83%), Positives = 373/410 (90%), Gaps = 6/410 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 57 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 116
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 117 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 176
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 177 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 236
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 237 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 296
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 297 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 356
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 357 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 416
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 417 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 466
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/435 (77%), Positives = 384/435 (88%), Gaps = 6/435 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
L+ LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 418 EAALGDANDDAIKNG 432
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/451 (76%), Positives = 384/451 (85%), Gaps = 7/451 (1%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S VPSS FLG KV + + KS +VV+E + K+ DRWAGL DISDDQQD
Sbjct: 28 SAVPSSAFLG-CKSKVPASAALGLAKGKS-RVVAEAESSKKV--DRWAGLGTDISDDQQD 83
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVH 143
I RGKG+VD LFQ P GT AV+SS+DYISQG R +DN DGLYIAPAFMDK+V+H
Sbjct: 84 IQRGKGLVDALFQGPQGMGTQNAVLSSWDYISQGQRTYSMDNIKDGLYIAPAFMDKLVIH 143
Query: 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 203
I KNF++LP +KVPLILGIWGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAK
Sbjct: 144 IAKNFMDLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAK 203
Query: 204 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
LIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV
Sbjct: 204 LIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 323
QLPG+YN+E PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN
Sbjct: 264 QLPGVYNKETIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDN 323
Query: 324 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 383
V +D+VKLVD FPGQSIDFFGALRARVYDDEVRKWI +VGIE IG+ LVNSK+GPPTF+
Sbjct: 324 VHDDDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWIGKVGIENIGRNLVNSKDGPPTFQ 383
Query: 384 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY-GKAAQQV 442
+P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS ALGDAN DAIK G+FY G AAQ +
Sbjct: 384 KPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSSDALGDANADAIKQGTFYGGNAAQHM 443
Query: 443 KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+ VPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 444 DLKVPEGCTDPNAENFDPTARSDDGTCVYDF 474
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/412 (83%), Positives = 373/412 (90%), Gaps = 7/412 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAP+FMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISK 138
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIR 197
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 258 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 317
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 318 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 377
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 378 MTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 429
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/417 (79%), Positives = 370/417 (88%), Gaps = 3/417 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
R +DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 236
F+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTD+VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLVQEQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYM 360
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
++LGDAN+D + +FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSDDG+C Y F
Sbjct: 361 KGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEYDF 417
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/412 (81%), Positives = 370/412 (89%), Gaps = 8/412 (1%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHIT 145
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 325
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 326 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 385
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 386 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 437
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYGK
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/417 (79%), Positives = 369/417 (88%), Gaps = 3/417 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
R +DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 236
F+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFR+D VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLV+EQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYM 360
Query: 417 SEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
++LGDAN+D + +FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSDDG+C Y F
Sbjct: 361 KGSSLGDANEDEREKDTFYGKAAQQINLPVPEGCTDPNAANFDPTARSDDGTCEYDF 417
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/371 (89%), Positives = 354/371 (95%), Gaps = 2/371 (0%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLY 131
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGL+ +LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFY 60
Query: 132 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191
IAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 192 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251
ELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 252 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 312 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 371
IGVC GIFRTD V EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+
Sbjct: 241 IGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKK 300
Query: 372 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 431
LVNS+EGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 432 GSFYGKAAQQV 442
G+FYGKAAQQV
Sbjct: 361 GTFYGKAAQQV 371
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/438 (77%), Positives = 377/438 (86%), Gaps = 31/438 (7%)
Query: 1 MAAVVSTVGAVNNALPLKINGSS-RFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
WI+ +G++ YG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVD---------------------------TYGSMLVQEQENVKRVQLADKYLN 392
Query: 418 EAALGDANDDAIKNGSFY 435
EAALGDAN+DAIK+GSF+
Sbjct: 393 EAALGDANEDAIKSGSFF 410
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/444 (76%), Positives = 380/444 (85%), Gaps = 16/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSSKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+Y+SQG + LDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 292 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 351
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 352 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 412 ADKYLSEAALGDANDDAIKNGSFY 435
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/444 (76%), Positives = 380/444 (85%), Gaps = 16/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAKPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+Y+SQG + LDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 292 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 351
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 352 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 412 ADKYLSEAALGDANDDAIKNGSFY 435
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/371 (88%), Positives = 355/371 (95%), Gaps = 2/371 (0%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLY 131
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGL+ +LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFY 60
Query: 132 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191
IAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 192 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251
ELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 252 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 312 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 371
+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+
Sbjct: 241 VGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKK 300
Query: 372 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 431
LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 432 GSFYGKAAQQV 442
G+FYGKAAQQV
Sbjct: 361 GTFYGKAAQQV 371
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/444 (76%), Positives = 380/444 (85%), Gaps = 16/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+Y+SQG + LDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 292 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 351
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 352 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 412 ADKYLSEAALGDANDDAIKNGSFY 435
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/440 (75%), Positives = 378/440 (85%), Gaps = 4/440 (0%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
R DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 417 SEAALGDANDDAIKNGSFYG 436
SEAALGDAN+D+IK G+FYG
Sbjct: 421 SEAALGDANEDSIKRGTFYG 440
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/444 (76%), Positives = 380/444 (85%), Gaps = 16/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+Y+SQG + LDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 292 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 351
PLIRDGRMEKFYWAPTR+DR+GVC GIF+TD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 352 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 412 ADKYLSEAALGDANDDAIKNGSFY 435
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/418 (80%), Positives = 369/418 (88%), Gaps = 13/418 (3%)
Query: 28 VPSSVFLGKSLKK-VSSKVSQQRILSKSFK------VVSEYDEEKQTSQDRWAGLAYDIS 80
P+S FLG LKK V+S V+ KSFK + + DE KQT D+W GLAYDIS
Sbjct: 15 TPTS-FLGNKLKKQVTSAVNYH---GKSFKANRFTVMAKDIDEGKQTDGDKWKGLAYDIS 70
Query: 81 DDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMD 138
DDQQDITRGKG+VD+LFQAPM GTH AV+SSY+Y+SQGL+ DNT+ G YIAPAFMD
Sbjct: 71 DDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMD 130
Query: 139 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
K+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA
Sbjct: 131 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190
Query: 199 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
GEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD
Sbjct: 191 GEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250
Query: 259 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 318
PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GI
Sbjct: 251 APTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGI 310
Query: 319 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEG 378
F+TDNV E +VK+VDTFPGQSIDFFGALRARVYD EVRKW+S GIE IGKRLVNS++G
Sbjct: 311 FQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDVEVRKWVSSTGIENIGKRLVNSRDG 370
Query: 379 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
P TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 371 PVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANKDAMKTGSFYG 428
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/413 (80%), Positives = 367/413 (88%), Gaps = 6/413 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/414 (80%), Positives = 367/414 (88%), Gaps = 9/414 (2%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVV 141
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + + DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 321
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 322 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 381
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 382 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 367/409 (89%), Gaps = 5/409 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 367/409 (89%), Gaps = 5/409 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/409 (79%), Positives = 366/409 (89%), Gaps = 5/409 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/409 (79%), Positives = 368/409 (89%), Gaps = 5/409 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGL+ DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYG 427
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/438 (75%), Positives = 373/438 (85%), Gaps = 5/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 419 AALGDANDDAIKNGSFYG 436
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/376 (85%), Positives = 348/376 (92%), Gaps = 2/376 (0%)
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+SQGLR
Sbjct: 6 DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 65
Query: 122 --HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 66 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFR 125
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGT
Sbjct: 126 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 185
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 186 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 245
Query: 300 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
EKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 246 EKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKW 305
Query: 360 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL EA
Sbjct: 306 VSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEA 365
Query: 420 ALGDANDDAIKNGSFY 435
ALGDAN DAI NGSF+
Sbjct: 366 ALGDANADAINNGSFF 381
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/409 (79%), Positives = 365/409 (89%), Gaps = 5/409 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLA DISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/421 (77%), Positives = 365/421 (86%), Gaps = 16/421 (3%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS----------FKVVS--EYDEEKQTSQDRWAGLA 76
S FLGK L K VS+ + KS FKV++ E DE KQ+ QDRW GLA
Sbjct: 19 SSFLGKKLSKQQVSAAAAVNYYHGKSSSSAAANVNRFKVMAAKEVDETKQSDQDRWKGLA 78
Query: 77 YDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAP 134
YD+SDDQQDITRGKGM+D+LFQAPM GTH AV+SSYDYISQG + DN +DG YI+
Sbjct: 79 YDVSDDQQDITRGKGMIDSLFQAPMGDGTHVAVLSSYDYISQGQKTYSFDNMMDGFYISK 138
Query: 135 AFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
+FMDK+VVH++KNF++LPN+KVPLILGIWGGKGQGKSFQCELVF+KMGI PIMMSAGELE
Sbjct: 139 SFMDKLVVHLSKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGIIPIMMSAGELE 198
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 254
SGNAGEPAKLIRQRYREAAD+I KGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLM
Sbjct: 199 SGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 258
Query: 255 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 314
NIADNPTNVQLPGMYN+ +N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV
Sbjct: 259 NIADNPTNVQLPGMYNKVDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 318
Query: 315 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN 374
C GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W++E G+E I K+LVN
Sbjct: 319 CKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVAETGVENIAKKLVN 378
Query: 375 SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 434
SKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYL+EAALG AN+DA+K G+F
Sbjct: 379 SKEGPPTFEQPKMTIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGAANEDAMKTGNF 438
Query: 435 Y 435
+
Sbjct: 439 F 439
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/378 (84%), Positives = 349/378 (92%), Gaps = 2/378 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +DRW GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSYDYISQG
Sbjct: 5 EVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQG 64
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
+ + DN +DG YIA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 65 QKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 124
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMG
Sbjct: 125 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMG 184
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 185 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 244
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 245 RMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVR 304
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
+W+SE G+E I ++LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+
Sbjct: 305 RWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLN 364
Query: 418 EAALGDANDDAIKNGSFY 435
EAALG+AN+DA+K GSF+
Sbjct: 365 EAALGEANEDAMKTGSFF 382
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/444 (72%), Positives = 371/444 (83%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAMGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q M GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAMGMGTQTAIMSSY 116
Query: 114 DYISQGLRHL--DNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+YIS R+ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 230
FQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 350
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + ++D+VKLVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIAEDDMVKLVDAFPGQSIDFFGALRAR 356
Query: 351 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 410
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 411 LADKYLSEAALGDANDDAIKNGSF 434
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/361 (86%), Positives = 344/361 (95%), Gaps = 3/361 (0%)
Query: 79 ISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAF 136
+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQGLR +LDN +DG YIAPAF
Sbjct: 1 MSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAF 60
Query: 137 MDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196
MDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESG
Sbjct: 61 MDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESG 120
Query: 197 NAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 255
NAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMN
Sbjct: 121 NAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMN 180
Query: 256 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 315
IADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 181 IADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 240
Query: 316 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 375
GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG+E IGK+LVNS
Sbjct: 241 IGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNS 300
Query: 376 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKYLS+AALG+AN DAI+ G+FY
Sbjct: 301 REGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFY 360
Query: 436 G 436
G
Sbjct: 361 G 361
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/444 (72%), Positives = 370/444 (83%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAIGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q + GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAIGMGTQNAIMSSY 116
Query: 114 DYISQGLRHL--DNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 171
+YIS R+ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 230
FQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 350
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + +D+V+LVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGISDDDMVRLVDAFPGQSIDFFGALRAR 356
Query: 351 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 410
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 411 LADKYLSEAALGDANDDAIKNGSF 434
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/412 (76%), Positives = 352/412 (85%), Gaps = 4/412 (0%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S +P+S FLG KVS+ V+ KS +VV E + EK+ DRWAGL DISDDQQD
Sbjct: 27 STLPNSAFLG-CKSKVSANVTLGVAKGKS-RVVCEAEGEKKKKVDRWAGLGNDISDDQQD 84
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVH 143
I RGKGMVD LFQ + GT MSS+DY+S G R + DN DGLYIAPAFMDK+++H
Sbjct: 85 IQRGKGMVDALFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIH 144
Query: 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 203
I KNF+NLP +KVPLILGIWGGKGQGKSFQCELV AK+GINPI+MSAGELESGNAGEPAK
Sbjct: 145 IAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAK 204
Query: 204 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
LIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNV
Sbjct: 205 LIRQRYREAADVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNV 264
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 323
QLPG+YN+EE PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN
Sbjct: 265 QLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDN 324
Query: 324 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 383
V +++ KLVD FPGQSIDFFGALRARVYDDEVRKWI+ G+E IGK LVNSK GPPTFE
Sbjct: 325 VSDDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWIAGTGVENIGKNLVNSKNGPPTFE 384
Query: 384 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
+P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS AALGDAN DAIK G+FY
Sbjct: 385 KPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSSAALGDANADAIKQGTFY 436
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/344 (88%), Positives = 327/344 (95%), Gaps = 2/344 (0%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNL 151
D+LFQAPM GTHYAVMSSY+YISQGL+ +LDN +DG YIAPAFMDK+VVHI+KNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSL 60
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 211
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 331
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVK 240
Query: 332 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 391
LVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEK 300
Query: 392 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/403 (76%), Positives = 348/403 (86%), Gaps = 5/403 (1%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDE--EKQTSQDRWAGLAYDISDDQQDITRGKGMVDT 95
+ +VS+ V+ SKS +VV E ++ E DRWAGL DISDDQQDI RGKGMVD
Sbjct: 1 MSRVSANVTLGVASSKS-RVVCEAEKTGEPPKKVDRWAGLGNDISDDQQDIQRGKGMVDA 59
Query: 96 LFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN 153
LFQ + GT MSS+DY+S G R + DN DGLYIAPAFMDK+++HI KNF+NLP
Sbjct: 60 LFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKNFMNLPG 119
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+KVPLILG+WGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAKLIRQRYREAA
Sbjct: 120 IKVPLILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAA 179
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNVQLPG+YN+EE
Sbjct: 180 DVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEE 239
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLV 333
PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +++ KLV
Sbjct: 240 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLV 299
Query: 334 DTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLL 393
D+FPGQSIDFFGALRARVYDDEVRKWIS G++ IGK+LVNSK+GPPTFE+P MT++KL+
Sbjct: 300 DSFPGQSIDFFGALRARVYDDEVRKWISATGVDNIGKKLVNSKDGPPTFEKPAMTIEKLM 359
Query: 394 EYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
EYG MLVQEQ+NVKRVQLAD+YLS AALGDAN DAI G+FYG
Sbjct: 360 EYGNMLVQEQQNVKRVQLADQYLSSAALGDANADAISQGTFYG 402
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/344 (87%), Positives = 328/344 (95%), Gaps = 2/344 (0%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNL 151
D+LFQAPM GTHYAVMSSY+Y+SQGL+ +LDN +DG YIAPAFMDK+VVHITKNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSL 60
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 211
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 331
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTD +P EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVK 240
Query: 332 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 391
LVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+LVNS++GPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEK 300
Query: 392 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/417 (76%), Positives = 348/417 (83%), Gaps = 11/417 (2%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRIL---SKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S VPSS F G SKVS L + +VV+E E +T DRWAGL DISDD
Sbjct: 20 STVPSSAFFG-----CKSKVSANGTLGIANGKSRVVAE-AESSKTKVDRWAGLGNDISDD 73
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKV 140
QQDI RGKGMVD LFQ GT A+MSS+ Y+SQG R +DN DGLYIAPAFMDK+
Sbjct: 74 QQDIQRGKGMVDALFQGAQGLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKL 133
Query: 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200
V+HI KNF+NLP +KVPLILGIWGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGE
Sbjct: 134 VIHIAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGE 193
Query: 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 260
PAKLIRQRYREAAD+IKKGKMC LFINDLDAG GRMGGTTQYTVNNQMVNATLMNIADNP
Sbjct: 194 PAKLIRQRYREAADVIKKGKMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNP 253
Query: 261 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
TNVQLP +YN+E PRVPIIVTGNDF TLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 254 TNVQLPSIYNKETIPRVPIIVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 313
Query: 321 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 380
DNV D+ KLVD FPGQSIDFFGALRARVYDDEVRKWI++VGIE IG+ LVNSK+GPP
Sbjct: 314 LDNVHDYDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWIAKVGIENIGRNLVNSKDGPP 373
Query: 381 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 437
TF++P MT+DKL+EYG +LVQEQ+NVKRVQLADKYLS AL DAN DAI+ G+FYGK
Sbjct: 374 TFQKPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSSDALVDANADAIQQGTFYGK 430
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/372 (81%), Positives = 340/372 (91%), Gaps = 2/372 (0%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
++ VST+GAVN + PL +N + L+P++ F G SLKK++S+++ RI + + K V++
Sbjct: 3 SSAVSTIGAVNRS-PLNLNNNGTGGLLPNTAFFGSSLKKMNSRLTNPRIAAGNIKAVADD 61
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQTS+DRW GLA+D SDDQQDITRGKGMVD+LFQAPM++GTHYAVMSSY+Y+S GLR
Sbjct: 62 DEEKQTSKDRWGGLAFDTSDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLR 121
Query: 122 -HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 180
+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 122 QYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAK 181
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 240
MGINPIMMSAGELESGNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGTT
Sbjct: 182 MGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTT 241
Query: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300
QYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 242 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 301
Query: 301 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 360
KFYWAPTREDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 302 KFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 361
Query: 361 SEVGIERIGKRL 372
S VG++ +GK L
Sbjct: 362 SGVGVQDVGKSL 373
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/334 (89%), Positives = 323/334 (96%), Gaps = 2/334 (0%)
Query: 105 THYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 162
TH V+SSY+YIS GLR +LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGI
Sbjct: 1 THNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGI 60
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 222
WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC
Sbjct: 61 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC 120
Query: 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 282
CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVT
Sbjct: 121 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVT 180
Query: 283 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 342
GNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSID
Sbjct: 181 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSID 240
Query: 343 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 402
FFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQE
Sbjct: 241 FFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQE 300
Query: 403 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
QENVKRVQLADKYLSEAALGDAN DAIK GSFYG
Sbjct: 301 QENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 334
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/391 (76%), Positives = 334/391 (85%), Gaps = 29/391 (7%)
Query: 85 DITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVV 142
DI RGKG VD+LFQAPM SGTH VMS+YDYIS R DNT+DG YIAP+FMDK++V
Sbjct: 2 DIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLV 61
Query: 143 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 202
HI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPA
Sbjct: 62 HISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPA 121
Query: 203 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 262
KL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTN
Sbjct: 122 KLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTN 181
Query: 263 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 322
VQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFR D
Sbjct: 182 VQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRAD 241
Query: 323 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 382
NV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+ IGK+L+NSKEGPPTF
Sbjct: 242 NVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTF 301
Query: 383 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV 442
E+P MT++KLLEYG MLV EQ+NVKRVQL D V
Sbjct: 302 EKPAMTIEKLLEYGNMLVGEQDNVKRVQLVD---------------------------NV 334
Query: 443 KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+PVPEGCTDP AANYDPTARSD+GSC Y+F
Sbjct: 335 NLPVPEGCTDPRAANYDPTARSDNGSCEYEF 365
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/333 (87%), Positives = 317/333 (95%), Gaps = 2/333 (0%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 13 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 72
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 73 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 132
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 133 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 192
Query: 286 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 345
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 193 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 252
Query: 346 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 253 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 312
Query: 406 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 438
VKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 313 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 345
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/431 (71%), Positives = 345/431 (80%), Gaps = 25/431 (5%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S +PSS G S KVS V+ KS +VV E + EK+ DRWAGL DISDDQQD
Sbjct: 28 STLPSSALFGCS-SKVSVNVTLGVAKGKS-RVVCEAEGEKKKV-DRWAGLGNDISDDQQD 84
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVH 143
I RGKGMVD LFQ GT MSS+DY+S R + DNT DGLYIAPAFMDK+V+H
Sbjct: 85 IQRGKGMVDALFQGATGLGTQVVTMSSWDYVSTAQRTYNFDNTSDGLYIAPAFMDKLVIH 144
Query: 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------- 184
+ KNF+NLP +KVPLILG+WGGKGQGKSFQ ELV K+GIN
Sbjct: 145 VCKNFMNLPGIKVPLILGVWGGKGQGKSFQSELVMKKLGINSGRGLLSSLVTLSFEISMC 204
Query: 185 -PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 243
PIMMSAGELESGNAGEPAKLIRQRYREAA II+KGKMCCLFINDLDAGAGRMGGTTQYT
Sbjct: 205 HPIMMSAGELESGNAGEPAKLIRQRYREAAAIIQKGKMCCLFINDLDAGAGRMGGTTQYT 264
Query: 244 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
VNNQMVNATLMNIAD+PTNVQLPG+YN+EE PRVPIIVTGNDFSTLYAPLIRDGRMEKFY
Sbjct: 265 VNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 324
Query: 304 WAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 363
WAPTREDRIGVC GIFR DN+ +++ K+VD FPGQSIDFFGALRARVYDDEVR WIS
Sbjct: 325 WAPTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISAT 384
Query: 364 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGD 423
G+E +GK LVNSK+GPP F++P MT++KL+EYG+MLVQEQ+NVKRVQLA++YL+ AALGD
Sbjct: 385 GVENLGKNLVNSKDGPPEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNSAALGD 444
Query: 424 ANDDAIKNGSF 434
AN DAIK G F
Sbjct: 445 ANADAIKQGKF 455
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/333 (87%), Positives = 317/333 (95%), Gaps = 2/333 (0%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 22 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 81
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 82 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 141
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 142 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 201
Query: 286 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 345
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 202 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 261
Query: 346 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 262 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 321
Query: 406 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKA 438
VKRVQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 322 VKRVQLAEQYLSEAALGDANSDAMKTGSFYGSA 354
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/326 (88%), Positives = 310/326 (95%), Gaps = 2/326 (0%)
Query: 115 YISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
Y+SQGLR DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 22 YLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 81
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG
Sbjct: 82 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 141
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAP
Sbjct: 142 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAP 201
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
LIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVY
Sbjct: 202 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVY 261
Query: 353 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 412
DDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA
Sbjct: 262 DDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLA 321
Query: 413 DKYLSEAALGDANDDAIKNGSFYGKA 438
++YLSEAALGDAN DA+K GSFYG A
Sbjct: 322 EQYLSEAALGDANSDAMKTGSFYGSA 347
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 283/351 (80%), Positives = 319/351 (90%), Gaps = 2/351 (0%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 10 ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 69
Query: 112 SYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 169
SY+Y+SQGL+ DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+P ILGIWGGKGQG
Sbjct: 70 SYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPRILGIWGGKGQG 129
Query: 170 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 229
KSFQCELVFAKMGINPIM+SAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 130 KSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 189
Query: 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTL
Sbjct: 190 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTL 249
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 250 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRA 309
Query: 350 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 400
RV DDEVRKW++ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLV
Sbjct: 310 RVNDDEVRKWVTSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 360
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/313 (90%), Positives = 304/313 (97%)
Query: 161 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 220
GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGK
Sbjct: 2 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 61
Query: 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
MCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+I
Sbjct: 62 MCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVI 121
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 340
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIF+ DNVP ED+VK+VDTFPGQS
Sbjct: 122 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQS 181
Query: 341 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 400
IDFFGALRARVYDDEVRKWIS VG++++GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV
Sbjct: 182 IDFFGALRARVYDDEVRKWISGVGVDKVGKKLVNSREGPPTFEQPKMTVEKLLEYGNMLV 241
Query: 401 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDP 460
QEQENVKRVQLADKYLSEAALGDAN DAI +G+FYGKAAQQVK+PVPEGCTDP+A N+DP
Sbjct: 242 QEQENVKRVQLADKYLSEAALGDANKDAINSGTFYGKAAQQVKLPVPEGCTDPSAQNFDP 301
Query: 461 TARSDDGSCNYQF 473
TARSDDGSC YQ
Sbjct: 302 TARSDDGSCLYQL 314
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/360 (77%), Positives = 319/360 (88%), Gaps = 5/360 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLK+V +K +S ++ +++ ++V+
Sbjct: 1 MAATVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKRVYAKGISSPKVSNRNLRIVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE K+T +DRW GL + SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 QEIDESKETKEDRWKGLYENASDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYVSQ 119
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
L+ +DN LDG YIAP+FMDK+ VHITKNFL+LPN+KVPLILG+WGGKGQGKSFQCEL
Sbjct: 120 ALKTYQMDNKLDGFYIAPSFMDKLAVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRM
Sbjct: 180 VFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRM 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/294 (92%), Positives = 284/294 (96%), Gaps = 2/294 (0%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLY 131
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGLR LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLRTYDLDNNMDGFY 60
Query: 132 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191
IAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 192 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 252 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 312 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 365
IGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/294 (92%), Positives = 284/294 (96%), Gaps = 2/294 (0%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLY 131
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGLR LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFY 60
Query: 132 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191
IAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 192 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 252 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 312 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 365
IGVC+GIFRTDNVP +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/310 (84%), Positives = 296/310 (95%)
Query: 127 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186
+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPI
Sbjct: 1 MDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPI 60
Query: 187 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 246
MMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNN
Sbjct: 61 MMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNN 120
Query: 247 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
QMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAP
Sbjct: 121 QMVNATLMNIADNPTNVQLPGMYNRQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 180
Query: 307 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 366
TR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+
Sbjct: 181 TRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQ 240
Query: 367 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 426
IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKR+QLADKY+SEAALGDAN+
Sbjct: 241 NIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAALGDANE 300
Query: 427 DAIKNGSFYG 436
D+IK G+FYG
Sbjct: 301 DSIKRGTFYG 310
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/304 (86%), Positives = 289/304 (95%)
Query: 132 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191
IA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG
Sbjct: 1 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAG 60
Query: 192 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 251
ELESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 61 ELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA 120
Query: 252 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
TLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 121 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 180
Query: 312 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 371
IGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++
Sbjct: 181 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARK 240
Query: 372 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 431
LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K
Sbjct: 241 LVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKT 300
Query: 432 GSFY 435
GSF+
Sbjct: 301 GSFF 304
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 280/293 (95%)
Query: 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 181
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 241
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
YTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 302 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
FYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 362 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/401 (66%), Positives = 322/401 (80%), Gaps = 6/401 (1%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSK---SFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S+ S F G+S+ S +++ + + ++ KV ++ K + RW GL D+SDD
Sbjct: 12 SMELGSSFTGRSVASPSGRIAGRPLRTQVQNGAKVFAKKTGSK-SQVGRWKGLDEDVSDD 70
Query: 83 QQDITRGKGMVDTLFQA--PMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKV 140
QQDITRG+ MVD+L+Q GTH A++SS +Y+SQ R L+N DG YI+P F+DK+
Sbjct: 71 QQDITRGRNMVDSLYQGFGVGAGGTHNAILSSEEYLSQAQRTLNNIEDGFYISPPFLDKI 130
Query: 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200
+H+ KNFL+LP +KVPLILGIWGGKGQGK+FQC L F K+ INPI+MSAGELESGNAGE
Sbjct: 131 SIHVAKNFLDLPKIKVPLILGIWGGKGQGKTFQCNLAFKKLDINPIVMSAGELESGNAGE 190
Query: 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 260
PAKL+RQRYREA+D+IKKGKM LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNP
Sbjct: 191 PAKLVRQRYREASDVIKKGKMSSLFINDLDAGAGRMGAGTQYTVNNQMVNATLMNIADNP 250
Query: 261 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
TNVQLPG+Y QEE PRVP+I TGNDFSTLYAPLIRDGRMEKFYWAP+R+DR+GVC GIF+
Sbjct: 251 TNVQLPGVYKQEEIPRVPVICTGNDFSTLYAPLIRDGRMEKFYWAPSRDDRVGVCMGIFQ 310
Query: 321 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 380
D V + D+ LVDTFPGQSIDFFGALRARVYDD+VR+++S +G+E IGKRLVNS+E
Sbjct: 311 HDGVNRTDVEHLVDTFPGQSIDFFGALRARVYDDKVREFVSTIGLENIGKRLVNSREAKV 370
Query: 381 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 421
TFE+P+M L+ LL+YG +LV EQENVKRVQLAD YLS A L
Sbjct: 371 TFEKPEMDLNTLLKYGNLLVDEQENVKRVQLADSYLSGAEL 411
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/367 (70%), Positives = 307/367 (83%), Gaps = 3/367 (0%)
Query: 66 QTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQAPMESG-THYAVMSSYDYISQGLRH 122
+T + RW G+ D+ SDDQQDI RG+ MVD+LFQ G TH A+MSS DY+S R+
Sbjct: 41 KTQRGRWRGMDADVDMSDDQQDIARGRQMVDSLFQGGGGMGGTHNAIMSSTDYLSTAARN 100
Query: 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
+N DG YI+PAF+DK+ +H+ KNF++LP +KVPLILGIWGGKGQGK+FQC L + K+G
Sbjct: 101 FNNIEDGFYISPAFLDKMSIHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQCNLAYKKLG 160
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
I+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+MC LFINDLDAGAGRMG TQY
Sbjct: 161 ISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMCSLFINDLDAGAGRMGDATQY 220
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
TVNNQMVNATLMNIAD+PTNVQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+
Sbjct: 221 TVNNQMVNATLMNIADSPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKY 280
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362
YW PTREDRIGVC GIF+ DNV + D+ KLVD FPGQSIDFFGALRARVYDD+VR+WI+
Sbjct: 281 YWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRARVYDDKVREWITG 340
Query: 363 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 422
G+E IGKRL+NS+EG FE+P M L L++YG MLV+EQENVKRVQLAD+Y+S AAL
Sbjct: 341 TGVENIGKRLINSREGKVEFEKPSMNLSTLMQYGNMLVEEQENVKRVQLADEYMSGAALA 400
Query: 423 DANDDAI 429
++ ++
Sbjct: 401 GSSGSSL 407
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/394 (65%), Positives = 316/394 (80%), Gaps = 4/394 (1%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTS-QDRWAGL--AYDISDDQQDITRGKGMVDTLFQA 99
++V++Q + + +F + ++ S + RW G+ D SDDQQDI+RG+ MVD+LFQ
Sbjct: 22 ARVTRQNVSNGAFATMRRSSSSQRPSQKGRWKGMDAGMDASDDQQDISRGREMVDSLFQG 81
Query: 100 PME-SGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPL 158
GTH A++SS DY+S R+ +N DG YI+PAF+DK+ +H+ KNFL+LP +KVPL
Sbjct: 82 GQGMGGTHNAILSSQDYLSTAQRNFNNIEDGFYISPAFLDKISIHVAKNFLDLPKIKVPL 141
Query: 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 218
ILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKK
Sbjct: 142 ILGIWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKK 201
Query: 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 278
G+M LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVP
Sbjct: 202 GRMSSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVP 261
Query: 279 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 338
I+ TGNDFSTLYAPLIRDGRMEK+YW PTREDR+GVC GIF+ DNV + D+ LVD FPG
Sbjct: 262 IVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRADVETLVDAFPG 321
Query: 339 QSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRM 398
QSIDFFGALRARVYDD+VR+WI G+E IGKRLVNS+EG F++P M L L+ YG +
Sbjct: 322 QSIDFFGALRARVYDDKVREWIQGTGVENIGKRLVNSREGKVEFDKPPMPLSTLMNYGNL 381
Query: 399 LVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 432
LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 382 LVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 415
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/383 (68%), Positives = 309/383 (80%), Gaps = 8/383 (2%)
Query: 42 SSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQA 99
S++V+ + + +VV+ ++ RW + D+ SDDQQDITRG+ MVD LFQ
Sbjct: 17 SARVAARSVRRAQLQVVAA----SRSQVGRWRNIDADVDTSDDQQDITRGRQMVDDLFQG 72
Query: 100 PMESG-THYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPL 158
+G TH AV+SS +Y+SQ +N DG YI+PAF+DK+ +HI KNF++LP +KVPL
Sbjct: 73 GFGAGGTHNAVLSSTEYLSQARASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPL 132
Query: 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 218
ILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIR RYREA+DIIKK
Sbjct: 133 ILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRYREASDIIKK 192
Query: 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 278
GKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVP
Sbjct: 193 GKMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVP 252
Query: 279 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 338
I+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + D+ +LVDTFPG
Sbjct: 253 IVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRGDVERLVDTFPG 312
Query: 339 QSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRM 398
QSIDFFGALRARVYDD VRKWI+EVGIE IG +LVN ++ +F + M+LD LL+YGR
Sbjct: 313 QSIDFFGALRARVYDDMVRKWIAEVGIEGIGSKLVNGRQ-KVSFPKVSMSLDVLLKYGRA 371
Query: 399 LVQEQENVKRVQLADKYLSEAAL 421
LV EQENVKRVQLAD YLS A L
Sbjct: 372 LVDEQENVKRVQLADAYLSGAEL 394
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/387 (65%), Positives = 309/387 (79%), Gaps = 5/387 (1%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGL--AYDISDDQQDITRGKGMVDT 95
+K + K + + K+ +V + + Q RWA + D+SDDQQDITRG+ MVD+
Sbjct: 5 MKNTAFKATGAKTAPKAVRVPACKASKSQAG--RWAAIDAGNDMSDDQQDITRGRDMVDS 62
Query: 96 LFQAPMESG-THYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNV 154
LFQ P G TH AV+SS DY+S R+ +N DG YI+PAF+DK+ +H+ KNF++LP +
Sbjct: 63 LFQGPGSGGGTHSAVLSSEDYLSTASRNFNNVEDGFYISPAFLDKMTIHVAKNFMDLPKI 122
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
KVPLILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+D
Sbjct: 123 KVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASD 182
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
+KKGKMC LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y + +
Sbjct: 183 SVKKGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKEVQI 242
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVD
Sbjct: 243 PRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRGEVEVLVD 302
Query: 335 TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLE 394
FPGQSIDFFGALRARVYDD+VR+++ G+E + KRL+NS+EG FE+P M LD L++
Sbjct: 303 AFPGQSIDFFGALRARVYDDKVREFVKNTGVENLSKRLINSREGKVVFEKPSMNLDILMK 362
Query: 395 YGRMLVQEQENVKRVQLADKYLSEAAL 421
YG+ L EQENVKRVQLA++Y+ A+L
Sbjct: 363 YGKFLTNEQENVKRVQLAEEYMMGASL 389
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/345 (73%), Positives = 290/345 (84%), Gaps = 4/345 (1%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
R DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDL+AGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLEAGAGRM 240
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSI
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSI 345
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/390 (65%), Positives = 311/390 (79%), Gaps = 7/390 (1%)
Query: 44 KVSQQRILSKSF--KVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPM 101
+V+ + + K+F VS + RW G+ DISDDQQDI RG+ MVD+ FQ
Sbjct: 82 QVNTRSLAGKNFIGSKVSSVTNGSKVQMSRWKGMDEDISDDQQDIARGRDMVDSKFQGGF 141
Query: 102 -ESGTHYAVMSSYDYISQGLRHLDN-TLDG--LYIAPAFMDKVVVHITKNFLNLPNVKVP 157
GTH AVMSS DYISQG ++LDN ++DG YI+P+F+DK VH+ KNF++LP +KVP
Sbjct: 142 GMGGTHNAVMSSTDYISQGQKNLDNLSVDGNNYYISPSFLDKTAVHVAKNFMDLPKIKVP 201
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
LILG+WGGKGQGK+FQ L+FAK+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+K
Sbjct: 202 LILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVK 261
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
KGK+ LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRV
Sbjct: 262 KGKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVVEIPRV 321
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 337
P+I TGNDFSTLYAPL+RDGRM+KFYWAPT EDR+G+ +GIF+ D V + D+ LV+ F
Sbjct: 322 PVIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGVDEADVRSLVEAFD 381
Query: 338 GQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYG 396
GQSIDFFGALRARVYDD+VR++I E+G+E IGKRLVN ++G +F+ P M+++ LLEYG
Sbjct: 382 GQSIDFFGALRARVYDDKVREFIQEMGLENIGKRLVNVRKGEEVSFDAPAMSIEILLEYG 441
Query: 397 RMLVQEQENVKRVQLADKYLSEAALGDAND 426
+ L EQENVKRVQLAD YL A L +++
Sbjct: 442 KALENEQENVKRVQLADAYLDGAVLAGSDE 471
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/382 (66%), Positives = 305/382 (79%), Gaps = 8/382 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAS--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILG 161
+G TH AV+SS +Y+SQ +N DG YI+PAF+DK+ +HI KNF++LP +KVPLILG
Sbjct: 76 AGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 342 DFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGRML 399
DFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+ L
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGKSL 372
Query: 400 VQEQENVKRVQLADKYLSEAAL 421
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/382 (66%), Positives = 305/382 (79%), Gaps = 8/382 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILG 161
+G TH AV+SS +Y+SQ +N DG YI+PAF+DK+ +HI KNF++LP +KVPLILG
Sbjct: 76 AGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 342 DFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGRML 399
DFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+ L
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGKSL 372
Query: 400 VQEQENVKRVQLADKYLSEAAL 421
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/270 (90%), Positives = 261/270 (96%)
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 60
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFST
Sbjct: 61 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFST 120
Query: 289 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
LYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALR
Sbjct: 121 LYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALR 180
Query: 349 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
ARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKR
Sbjct: 181 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKR 240
Query: 409 VQLADKYLSEAALGDANDDAIKNGSFYGKA 438
VQLA++YLSEAALGDAN DA+K GSFYG A
Sbjct: 241 VQLAEQYLSEAALGDANSDAMKTGSFYGSA 270
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/370 (67%), Positives = 294/370 (79%), Gaps = 6/370 (1%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQ-APMESGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RG+ MVD+ FQ A GTH AVMSS DY+
Sbjct: 31 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGRNMVDSKFQGATGIGGTHNAVMSSQDYL 90
Query: 117 SQGLR----HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
S G++ H + T + YI+P++MDKV+VH+ KNF+ LP +KVP+ILG+WGGKGQGK+F
Sbjct: 91 SAGMKTYSAHDNITTENFYISPSYMDKVIVHVAKNFMKLPKIKVPVILGVWGGKGQGKTF 150
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
Q +L+F K+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 151 QSDLIFKKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 210
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 211 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 270
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
L+RDGRM+KFYW+PTREDR+G+ +GIF D + KED+ LVDTF GQSIDFFGALR+RVY
Sbjct: 271 LVRDGRMDKFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQSIDFFGALRSRVY 330
Query: 353 DDEVRKWISEVGIERIGKRLVNSKEGPPT-FEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
DD VR +I EVG E +G RL+N ++G F PKMTL+ LL YG+ L EQEN+KR+QL
Sbjct: 331 DDLVRDFILEVGYEALGPRLINPRKGEEVNFNPPKMTLEVLLAYGKELENEQENIKRIQL 390
Query: 412 ADKYLSEAAL 421
AD YL A L
Sbjct: 391 ADAYLDGAVL 400
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/360 (69%), Positives = 287/360 (79%), Gaps = 3/360 (0%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRHL 123
K RW G+ DISDDQQDI RG+ MVD+ FQ GTH AVMSS DY+S G + +
Sbjct: 39 KTVMMSRWKGMDEDISDDQQDIARGRNMVDSKFQGGFGLGGTHNAVMSSSDYVSDGFKDV 98
Query: 124 DNTLD-GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
N D G YI+ FMD+ VHI KNF++LP +KVPLILG+WGGKGQGK+FQ L+F K+G
Sbjct: 99 SNMTDEGYYISKGFMDRFCVHIAKNFMDLPKIKVPLILGVWGGKGQGKTFQSMLIFKKLG 158
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
+ PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M LFINDLDAGAGRMGG+TQY
Sbjct: 159 VGPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMSTLFINDLDAGAGRMGGSTQY 218
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
TVNNQMVNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRMEK+
Sbjct: 219 TVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMEKY 278
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362
YW+P+ EDR+GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYDD+VR+WI E
Sbjct: 279 YWSPSFEDRVGVACGIFKADGVAEKDVEVLVRTFDGQSIDFFGALRARVYDDKVREWIRE 338
Query: 363 VGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 421
GIE +G LVN K G TFE P+M+LD LL+YG+ L EQENVKRVQLAD YL A L
Sbjct: 339 TGIEAMGPLLVNPKRGSKVTFEPPRMSLDILLQYGKALEMEQENVKRVQLADAYLDGAVL 398
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/380 (66%), Positives = 294/380 (77%), Gaps = 10/380 (2%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RGK MVD+ FQ GTH AVMSS DY+
Sbjct: 22 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGKNMVDSKFQGGAGIGGTHNAVMSSQDYL 81
Query: 117 SQGLRHLDN----TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
S G++ D T + YI+ ++MDKVVVHI KNF+ LP +KVPLILG+WGGKGQGK+F
Sbjct: 82 SAGMKTYDGHDNITAENFYISKSYMDKVVVHIAKNFMQLPKIKVPLILGVWGGKGQGKTF 141
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
Q +L+F K+GINPI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 142 QSDLIFRKLGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 201
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 202 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 261
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
L+RDGRM+KFYW+PT EDR+G+ +GIF D V ED+ LV TF GQSIDFFGALRARVY
Sbjct: 262 LVRDGRMDKFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQSIDFFGALRARVY 321
Query: 353 DDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
DD+VR +I VG +++GKRL+N ++G FE P MTL+ LL YG+ + EQEN+KR+QL
Sbjct: 322 DDKVRDFILSVGYDQLGKRLINPRKGEEVVFEPPAMTLEVLLAYGKEIENEQENIKRIQL 381
Query: 412 ADKYLSEAAL----GDANDD 427
AD YL A L G +N D
Sbjct: 382 ADAYLDGAVLAGSGGSSNTD 401
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/269 (90%), Positives = 254/269 (94%)
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
+GQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLF
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLF 61
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGND
Sbjct: 62 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGND 121
Query: 286 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 345
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN+ K+DIVK+VDTFPGQSIDFFG
Sbjct: 122 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFG 181
Query: 346 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
ALRARVYDDEVRKW+S VGIE IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLV EQEN
Sbjct: 182 ALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQEN 241
Query: 406 VKRVQLADKYLSEAALGDANDDAIKNGSF 434
VKRVQLADKYL AALGDAN DAIK G F
Sbjct: 242 VKRVQLADKYLEGAALGDANQDAIKEGKF 270
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/355 (68%), Positives = 281/355 (79%), Gaps = 4/355 (1%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRHLDNTLD- 128
RW G+ DISDDQQDI RG+GMVD+ FQ GT A+M DY+S G + L N D
Sbjct: 46 RWKGMDEDISDDQQDIARGRGMVDSKFQGGFGLGGTQNAIMQGSDYVSDGFKDLSNMSDE 105
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G YI+ ++MDK+ VH+ KNF++LP +KVPLILGIWGGKGQGK+FQ L+F ++GI PI+M
Sbjct: 106 GYYISKSYMDKITVHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQSTLIFKRLGIAPIIM 165
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 248
SAGELESGNAGEPAKLIRQRYREA+DIIKKGKM LFINDLDAGAGRMGG+TQYTVNNQM
Sbjct: 166 SAGELESGNAGEPAKLIRQRYREASDIIKKGKMSTLFINDLDAGAGRMGGSTQYTVNNQM 225
Query: 249 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 308
VNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRM+KFYW+PT
Sbjct: 226 VNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMDKFYWSPTF 285
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 368
EDR GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYD +VR+W+ VG E I
Sbjct: 286 EDRCGVACGIFKADGVNEKDVEVLVRTFDGQSIDFFGALRARVYDQKVREWVQTVGQENI 345
Query: 369 GKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 421
G LVN +G FE P M+L+ LL++G+ L EQENVKRVQLAD YL A L
Sbjct: 346 GSYLVNPSRDKGKLEFEPPVMSLEVLLQHGKALEGEQENVKRVQLADAYLDGAVL 400
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/260 (89%), Positives = 249/260 (95%)
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY
Sbjct: 1 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 60
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD+VP E +
Sbjct: 61 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEHV 120
Query: 330 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 389
VKLVD+FPGQSIDFFGALRARVYDDEVRKWI VG++ IGK+LVNS+EGPPTF+QPKM+L
Sbjct: 121 VKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGVGVDNIGKKLVNSREGPPTFDQPKMSL 180
Query: 390 DKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEG 449
+KLLEYG MLVQEQENVKRVQLAD+YLS AALGDAN DA+++GSFYGKAAQQV VPVPEG
Sbjct: 181 EKLLEYGNMLVQEQENVKRVQLADQYLSSAALGDANKDAMQSGSFYGKAAQQVGVPVPEG 240
Query: 450 CTDPAAANYDPTARSDDGSC 469
CTDP A+N+DPTARSDDGSC
Sbjct: 241 CTDPNASNFDPTARSDDGSC 260
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/250 (91%), Positives = 241/250 (96%), Gaps = 2/250 (0%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNL 151
D+LFQAPM GTHYAVMSSY+Y+SQGLR LDN +DG YIAPAFMDK+VVHITKNF+ L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTL 60
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 211
PN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 331
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +D+VK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVK 240
Query: 332 LVDTFPGQSI 341
LVDTFPGQSI
Sbjct: 241 LVDTFPGQSI 250
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/244 (92%), Positives = 235/244 (96%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G YIAPAFMDK+VVHITKNF+ PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM
Sbjct: 1 GFYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 248
SAGELESGNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGTTQYTVNNQM
Sbjct: 61 SAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTTQYTVNNQM 120
Query: 249 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 308
VNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 121 VNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 180
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 368
EDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS VG++ +
Sbjct: 181 EDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVQDV 240
Query: 369 GKRL 372
GK L
Sbjct: 241 GKSL 244
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/246 (89%), Positives = 239/246 (97%)
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 60
Query: 286 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 345
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFR+D+VP+EDIVK+VDTFPGQSIDFFG
Sbjct: 61 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFFG 120
Query: 346 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
ALRARVYDDEVRKWIS VG+E IGK+LVNSKEGPPTF+QPKMT++KLLEYG MLVQEQEN
Sbjct: 121 ALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFDQPKMTVEKLLEYGNMLVQEQEN 180
Query: 406 VKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSD 465
VKRVQLADKYLSEAALGDAN D+IK+G+FYGKAAQQ+ +PVPEGCTDP AAN+DPTARSD
Sbjct: 181 VKRVQLADKYLSEAALGDANQDSIKSGTFYGKAAQQINIPVPEGCTDPLAANFDPTARSD 240
Query: 466 DGSCNY 471
+GSC Y
Sbjct: 241 NGSCLY 246
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/249 (88%), Positives = 236/249 (94%), Gaps = 2/249 (0%)
Query: 115 YISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
Y+S GL+ + DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGALRARVY
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVY 241
Query: 353 DDEVRKWIS 361
DDEVRKW+S
Sbjct: 242 DDEVRKWVS 250
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/259 (83%), Positives = 235/259 (90%)
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN
Sbjct: 1 LIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN 60
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD
Sbjct: 61 ARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVD 120
Query: 335 TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLE 394
FPGQSIDFFGALRARVYDDEVRK++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+E
Sbjct: 121 QFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLME 180
Query: 395 YGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPA 454
YG MLV EQENVKRVQLA+ YLS+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP
Sbjct: 181 YGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPV 240
Query: 455 AANYDPTARSDDGSCNYQF 473
A N+DPTARSDDG+C Y F
Sbjct: 241 AENFDPTARSDDGTCVYNF 259
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/242 (89%), Positives = 233/242 (96%)
Query: 128 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 188 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
R+DR+GVC GIFRTD VP++++ KLVDTFPGQSIDFFGALRA+VYDDEVRKW+S VG++
Sbjct: 183 RDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVSGVGVDG 242
Query: 368 IG 369
IG
Sbjct: 243 IG 244
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/236 (93%), Positives = 229/236 (97%), Gaps = 2/236 (0%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AVMSSY+YISQGLR LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGG
Sbjct: 1 AVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGG 60
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 61 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 120
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 121 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 180
Query: 286 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSI
Sbjct: 181 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/227 (92%), Positives = 221/227 (97%)
Query: 128 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 188 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
MVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
R+DR+GVC GIFRTD VP+E++ +LVDTFPGQSIDFFGALRARVYDD
Sbjct: 183 RDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYDD 229
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/235 (88%), Positives = 222/235 (94%), Gaps = 2/235 (0%)
Query: 115 YISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
Y+S GL+ + DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAL 347
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGAL
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/314 (70%), Positives = 245/314 (78%), Gaps = 51/314 (16%)
Query: 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
+DN DGLYIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMG
Sbjct: 3 MDNMKDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 62
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
INPIMMSAGELESGNAG E A +I++ + GR
Sbjct: 63 INPIMMSAGELESGNAG-----------EPAKLIRQRYL------------GR------- 92
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
G YN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKF
Sbjct: 93 ---------------------DHAGRYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 131
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362
YWAPTR+DRIGVC+GIF+TD+V + DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS
Sbjct: 132 YWAPTRDDRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG 191
Query: 363 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 422
VG++ +GK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLAD+YL+EAALG
Sbjct: 192 VGVDGVGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYLNEAALG 251
Query: 423 DANDDAIKNGSFYG 436
DAN DAI G+F+G
Sbjct: 252 DANSDAIDRGTFFG 265
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/287 (68%), Positives = 243/287 (84%), Gaps = 1/287 (0%)
Query: 130 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189
Y++P F+DKV VHITKNFL+LP VKVPLILGI G KG+GKSFQCELVF +MGI P+ MS
Sbjct: 3 FYVSPRFLDKVAVHITKNFLDLPGVKVPLILGIHGRKGEGKSFQCELVFERMGIEPVHMS 62
Query: 190 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 248
AGELES +AG+PA+LIR RYREA + I+ +G+MC L INDLDAGAGR G TQYTVN Q+
Sbjct: 63 AGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGGTQYTVNTQL 122
Query: 249 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 308
VNATLMNIADNPTNVQLPG Y+++ PRVPI+VTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDEKPLPRVPILVTGNDFSTLYAPLIRDGRMEKFYWDPDY 182
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 368
EDR+G+ SGIF D + ++D +LVDTFP QSIDFFGALR+R YD++VR++I EVG+E++
Sbjct: 183 EDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRFIQEVGVEQV 242
Query: 369 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
RL+NSKEG PTF++P+ TL++LLE+G ++VQEQE V+ +LA++Y
Sbjct: 243 SFRLLNSKEGAPTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEY 289
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/232 (86%), Positives = 216/232 (93%)
Query: 203 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 262
KLI QRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN
Sbjct: 1 KLISQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 60
Query: 263 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 322
VQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD
Sbjct: 61 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 120
Query: 323 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 382
NVP+E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GPPTF
Sbjct: 121 NVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 180
Query: 383 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 434
EQPKMT++KLLEYG MLVQEQENVKRVQLA+ YL EAALGDAN DAI G+F
Sbjct: 181 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 232
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/226 (88%), Positives = 212/226 (93%), Gaps = 2/226 (0%)
Query: 81 DDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMD 138
DDQQDI RGKG VD+LFQAPM SGTH A+MSSYDYIS R LDN +DG YIAPAFMD
Sbjct: 1 DDQQDIRRGKGKVDSLFQAPMGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMD 60
Query: 139 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
K+VVHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+A
Sbjct: 61 KLVVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDA 120
Query: 199 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
GEPAKLIR+RYREAADI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIAD
Sbjct: 121 GEPAKLIRKRYREAADIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIAD 180
Query: 259 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304
NPTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYW
Sbjct: 181 NPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/354 (55%), Positives = 256/354 (72%), Gaps = 20/354 (5%)
Query: 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
+D YI+P F+DK+ VHITKN+L+LPNVKVPLILG+ G KG+GKSFQCELVF +MG
Sbjct: 55 IDAEFMSFYISPRFLDKIAVHITKNYLDLPNVKVPLILGVHGRKGEGKSFQCELVFERMG 114
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQ 241
+N + MSAGELES +AG+PA+LIR RYREAA+++K +GKM L IND+DAGAGR+ TQ
Sbjct: 115 VNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQYTQ 174
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
YTVN Q+VN TLMNIADNPTNVQLPG Y+ E R+PIIVTGNDFSTLY PL+RDGRMEK
Sbjct: 175 YTVNTQLVNGTLMNIADNPTNVQLPGSYDSEPIQRIPIIVTGNDFSTLYQPLVRDGRMEK 234
Query: 302 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
FYW P +DR+G+ +GIF+ D V + DI KLVDTFP Q+IDFFGALR+R++D+++R +I
Sbjct: 235 FYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNFIH 294
Query: 362 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA---DKYLSE 418
VGIER+ +R+VNSKE PP F++P +L L+E G +V EQ+ V+ LA +K+L
Sbjct: 295 SVGIERVSQRVVNSKEAPPEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNKFLYN 354
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQ 472
LGD + + +G D +++N+ T +S+ N Q
Sbjct: 355 RRLGDTDSSTLPR----------------QGSIDSSSSNFFRTYQSESLKNNGQ 392
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/286 (65%), Positives = 233/286 (81%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DKV VHITKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQMV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLDRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD+++R++I ++GIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREFIHKIGIERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/286 (65%), Positives = 233/286 (81%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DKV VH+TKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHVTKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTTTQYTVNTQMV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD++VR++I +VGIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREFIHKVGIERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/304 (60%), Positives = 236/304 (77%), Gaps = 1/304 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P+F+DKV VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F ++G P+ +S
Sbjct: 4 YISPSFLDKVAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDDTPLHRVPIIVTGNDFATLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ SGIF D +P+ +I + VD FP Q+IDFF ALR+R+YD+++R++I +GIE++
Sbjct: 184 DKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGIGIEKVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
KRLVNS E P F +P +L +L+E GR +V +Q +K ++L ++Y G N +
Sbjct: 244 KRLVNSLEAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQNRLFGSQNSGEV 303
Query: 430 KNGS 433
+ S
Sbjct: 304 SSNS 307
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/345 (57%), Positives = 254/345 (73%), Gaps = 9/345 (2%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G YIAP F+DK+ VHITKN+L+LPNVKVPLILGI G KG+GK+F CELVF +MGI + M
Sbjct: 2 GYYIAPRFLDKLSVHITKNYLDLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYM 61
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
SAGELES +AG+P++LIR RYREA + K G+M L IND+DAG GR+ TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQ 121
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
+VNATLMNIADNPTNVQLPG Y+QE R+PII+TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEPD 181
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
R DR+G+ GIF D +P +I KLVD+FP QSIDFFGALR+R+YD+++R+ I EVGIER
Sbjct: 182 RSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEVGIER 241
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY--LSEAALGDAN 425
I R+VNS E P F +P +L L+E G+++V+EQ+ ++ ++L+++Y + A
Sbjct: 242 ISPRVVNSAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEYNRPGQTARSSTP 301
Query: 426 DDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCN 470
D AI + Y + +PE + ++AN A S+ GS +
Sbjct: 302 DGAIASPPAYHQPPY-----LPEPGSHSSSANGH-AAPSEPGSLS 340
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + ++ +LVDTFP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 DKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQVGFEHVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS EGPP F++P+ +L L+E G +V EQ+ V+ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEY 289
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 240/332 (72%), Gaps = 16/332 (4%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y + +
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRL 292
Query: 430 KNGSFYGKAAQQVKV----PVPEGCTDPAAAN 457
G Y A+ ++ P P G P +A+
Sbjct: 293 NRGRSYQPASPVAEIATSQPSPNGVNQPQSAS 324
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/293 (61%), Positives = 231/293 (78%), Gaps = 1/293 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFL +P ++VPLI+GI G KG+GK+FQC+LVF KMGI P+ +S
Sbjct: 4 YISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+L+R RYREA++ +K +G+MC LFINDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DR+G+ IF+TD + DI L+D F Q+IDFF ALR+R+YD+++R +I +VGIE+I
Sbjct: 184 DRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIEKIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 422
+R+VNS E P F QP + +LLEYG+++V EQE ++ + L ++Y G
Sbjct: 244 RRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFG 296
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/323 (57%), Positives = 237/323 (73%), Gaps = 12/323 (3%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKIAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A+ +K +G+MC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+++G+ GIF D + ++ + VDTFP QSIDFF A+R+R+YD+++RK+I E+G E I
Sbjct: 184 EKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEIGFENIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS EGPPTF++P L L+E G +V EQ+ V+ QL D+Y + +
Sbjct: 244 LRVVNSVEGPPTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEY-----------NRL 292
Query: 430 KNGSFYGKAAQQVKVPVPEGCTD 452
G Y A +V+ P+ + T+
Sbjct: 293 NRGRSYQVAPPKVETPISQPSTN 315
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/300 (62%), Positives = 233/300 (77%), Gaps = 3/300 (1%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFL+LP ++VPLILGI G KG+GK+FQCELVF +MGI I +S
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA++IK +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEPDRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ GIF D + +++ +LVD FP Q+IDFF ALR+RVYD+++R++I E GIER+
Sbjct: 184 DKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHETGIERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS EGPP F++P L LLE G +VQEQ+ V+ +L +Y AL AN + I
Sbjct: 244 LRVVNSTEGPPVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY--NQALYYANRNPI 301
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 228/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP+F+DK+ VHITKNFLN+P ++VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM+KFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + +++I + VDTFP QSIDFF ALR+R+YD+++R +I ++G E +
Sbjct: 184 DKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKIGFENVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS EGPP F++P TL L+E G+ +V EQ+ V+ L D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/286 (64%), Positives = 226/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + K +I +LVDTFP QSIDFF ALR+R+YD+++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQVGFERIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSVEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 230/286 (80%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFL++P+V+VPLILGI G KG+GKSFQCELVF +MGI + MS+
Sbjct: 6 YISPRFIDKLAVHITKNFLDIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHMSS 65
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++I+ KGKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 66 GELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQLV 125
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
+ TLMNIADNPTNVQLPG Y+ + RVPIIVTGNDFSTLYAPL RDGRM KFYW P RE
Sbjct: 126 HGTLMNIADNPTNVQLPGSYDSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEPNRE 185
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIG+ SGIF D + +I +L+DTF Q+IDFF ALR+R+YD+++RK+I ++GI+R+
Sbjct: 186 DRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDIGIDRVS 245
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNSK+GPP FE P ++ +L+E+G ++ EQ+ ++ LA +Y
Sbjct: 246 SRVVNSKQGPPKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/319 (57%), Positives = 235/319 (73%), Gaps = 12/319 (3%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP+F+DK+ VHITKNFLNLP ++VPLILGI G KG+GKSFQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPL RDGRMEKFYW P R+
Sbjct: 124 NATLMNIADSPTDVQLPGSYDSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + +I +LVD F QSIDFF LR+R+YD+++R++I +G E +
Sbjct: 184 DKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTIGFENVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS EGPP F++P +L L++ G+ +V EQ+ V+ QL D+Y + +
Sbjct: 244 SRVVNSAEGPPAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY-----------NRL 292
Query: 430 KNGSFYGKAAQQVKVPVPE 448
G Y AA + PV +
Sbjct: 293 NRGKSYQPAASIAETPVSQ 311
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DKV VHITKNFL+LP ++VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFLDKVAVHITKNFLDLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDPTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ GIF D + + +I +LVDTF QSIDFF ALR+R+YD+++R +I EVG+ER+
Sbjct: 184 DKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEVGVERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+R+VNS EGPP F +P L L+E G ++V EQ+ V QL +Y
Sbjct: 244 RRVVNSLEGPPQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEY 289
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 226/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP+F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLHLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + +I +LVDTF Q+IDFF +LR+R+YD ++R +I +VG E+I
Sbjct: 184 DKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQVGFEQIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
KR+VNS EGPP F++P L L+E G+++V EQ+ V+ L D+Y
Sbjct: 244 KRVVNSLEGPPEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 231/286 (80%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DKV VHITKNFL++P +KVPLILGI G KG+GK+FQCELVF MGI P+M+S
Sbjct: 4 YISPRFLDKVSVHITKNFLDIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P++L+R RYREAA+ ++ KG+MC +FIND DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y++ R+PII+TGNDFSTLYAPLIRDGRM+KFYW P+RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIITGNDFSTLYAPLIRDGRMDKFYWEPSRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRI + GIF D++ I+KLVD F GQ+IDFF A+R+R+YD+++R++I G+++I
Sbjct: 184 DRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYHQGLDKIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+RLVNS + PP QP +L L+E GR +V+EQ+ +++++L ++Y
Sbjct: 244 RRLVNSVDKPPELPQPDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQC+LVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQMV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + ++ +LVDTFP QSIDF+ ALR+R+YD +VR++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQVGFERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E PP F++P +L L+ G +V EQ+ V+ QL D+Y
Sbjct: 244 SRIVNSAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/341 (56%), Positives = 243/341 (71%), Gaps = 16/341 (4%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLQLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + + +LVDTF QS+DFF ALR+R+YD+++R++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQVGFERVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS E PP F++P +L L+E G ++V EQ+ V+ L D Y + +
Sbjct: 244 LRVVNSAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDY-----------NRL 292
Query: 430 KNGSFYGKAAQQVKVPVPEGCTD----PAAANYDPTARSDD 466
G Y A+ + PV + T+ P A+N T + +
Sbjct: 293 NRGRSYQAASPAAETPVSQPSTNGFPKPEASNSHLTLETQE 333
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 224/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P+F+DK+ VHITKNFL LP V+VPLILGI G KG+GKSFQCELVF +MGI I MSA
Sbjct: 4 YISPSFLDKLAVHITKNFLELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHMSA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P +L+R RYREA+++ K +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPT+VQLPG Y+ R+PIIVTGNDFSTLYAPLIRDGRMEKF+W P R+
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ SGIF D +PK DI KLVDTF Q IDFF ALR+R+YD+++R +I G E++
Sbjct: 184 DKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTTGFEKVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E PTF +P L +L+EYG ++V+EQ+ V+ L +Y
Sbjct: 244 LRVVNSTEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREY 289
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/288 (62%), Positives = 228/288 (79%), Gaps = 1/288 (0%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G YIAP F+DK+ VHITKNFLN+P V+VPLILG+ G KG+GKSFQCELVF +MGI ++
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLI 61
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
S GELES +AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
R+D++GV GIF D + + ++ +LVDTFP QSIDF+ A+R+R+YD++V +I ++G+E
Sbjct: 182 RDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDIGVEN 241
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+ +R+VNS E P F +P +L +LLE G +V EQ++V+ QL ++Y
Sbjct: 242 VSQRVVNSAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQY 289
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/330 (57%), Positives = 235/330 (71%), Gaps = 9/330 (2%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G YIAP F+DK+ VHITKNFL LP V+VP+ILGI G KG+GK+FQC+LVF KMGI +
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHV 61
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
S GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
R+D++G+ GIF D + ++++ +LVDTF QSIDFF ALR+R+YD+++R +I +VG ER
Sbjct: 182 RDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQVGFER 241
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD 427
+ +VNS EGPP F++P L L+E G LV EQ+ V+ L D Y + G
Sbjct: 242 VSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDY-NRLNRG----- 295
Query: 428 AIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 457
+N AA + P G T A N
Sbjct: 296 --RNSQSASPAATPINQPSSNGATQEAKTN 323
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 232/286 (81%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCELVF +MGI + MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHMSA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P++L+R RYREAA++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQMV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ RVPI+VTGNDF+TLYAPLIRDGRMEKF+W PTR+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEPTRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+++G+ GI+ D + + +I +LVD F Q++DFFGALR+R+YD+++R++I +VG ++
Sbjct: 184 EKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVGYNKVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+VNS +GPP F++P +L +L+E+G ++ QEQ+ V+ +L ++Y
Sbjct: 244 SAVVNSVDGPPIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F++K+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF +MG+ + MSA
Sbjct: 4 YISPRFLNKLSVHITKNYLDLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHMSA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA++I+ +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPT+VQLPG Y+ RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEPDRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIG+ SGIF D +P++ I +LVDTFPGQ IDFF ALR+R+YD+++ ++I ++G ERI
Sbjct: 184 DRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKIGFERIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E P F +P L +L+E+G +L EQ+ V+ + L +Y
Sbjct: 244 SRIVNSAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 225/287 (78%), Gaps = 1/287 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VH+ KNF+ LPNV VPLILGI GGKG+GKSFQCEL F K+GI PI MS
Sbjct: 4 YISPRFLDKLAVHLAKNFMKLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRMSG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA+++K +GKMC L INDLDAGAGR+ TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPL+RDGRMEKF+W P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMPDRT 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIG+ SGIF DN+P+ +I +LVD +P +SIDFFG+LR+ +YD++VRK++ ++G+ER+
Sbjct: 184 DRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDIGLERLS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RLVNS E P F P L L E G L+ E + V + L +Y+
Sbjct: 244 LRLVNSTEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLKLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEPDRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + ++++ +LVDTFP QSIDF+ A+R+R+YD+++R +I +VG E++
Sbjct: 184 DKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKVGFEQVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+VNS EGPP F++P L L+E G ++V EQ+ V+ QL D+Y
Sbjct: 244 LSVVNSVEGPPEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/287 (63%), Positives = 230/287 (80%), Gaps = 2/287 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAPAF+DK+ VHITKNFL+LP VKVPLILG+ G KG+GK+FQCELVF +M + I +SA
Sbjct: 4 YIAPAFLDKLAVHITKNFLDLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIHISA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+ A+LIR RYREAA+IIK +G+M L IND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIAD+PTNVQLPG Y+ PR+PIIVTGND STLYAPLIRDGRMEK+YW PTRE
Sbjct: 124 NATLMNIADHPTNVQLPGSYDSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWVPTRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D+IG+ GIF DN+ + +IV LVD FP +++DFF A+RAR+YD+++R +I +VG+ER+
Sbjct: 184 DKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKVGLERLS 243
Query: 370 KRLVNSKEG-PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+VN G PTF +P TL +L+E+G +LVQEQ++V +L ++Y
Sbjct: 244 IEVVNPASGIKPTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 192/204 (94%)
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAP
Sbjct: 2 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 61
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
LIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVY
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 121
Query: 353 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 412
DDEVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA
Sbjct: 122 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 181
Query: 413 DKYLSEAALGDANDDAIKNGSFYG 436
DKYL EAALGDAN DAI NGSF+
Sbjct: 182 DKYLKEAALGDANADAINNGSFFA 205
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 226/286 (79%), Gaps = 2/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFL + N++VPLILGI G KG+GK+FQCELVF KMG P+ +S
Sbjct: 4 YISPRFLDKLAVHITKNFLKISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P++LIR RYREA++ K +G+MC LFIND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P +
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNSK 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+R+ + GIF+ + + K+DI+KLVD FP QS+DFF ALR+R+YD++++ +I ++GIE+I
Sbjct: 184 ERVEIVEGIFQQE-LLKQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQMGIEKIS 242
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
KR+VNS E PP F +P LLE G +V EQ ++ ++L ++Y
Sbjct: 243 KRIVNSTEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEY 288
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/192 (93%), Positives = 187/192 (97%)
Query: 128 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 188 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 308 REDRIGVCSGIF 319
R+DR+GVC GIF
Sbjct: 183 RDDRVGVCKGIF 194
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/202 (89%), Positives = 192/202 (95%), Gaps = 2/202 (0%)
Query: 115 YISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 172
Y+S GL+ + DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 13 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 72
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 73 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 132
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 133 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 192
Query: 293 LIRDGRMEKFYWAPTREDRIGV 314
LIRDGRMEKFYWAPTR+DR+GV
Sbjct: 193 LIRDGRMEKFYWAPTRDDRVGV 214
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/289 (61%), Positives = 227/289 (78%), Gaps = 2/289 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ VHITKNFLNLP + VPLILGI G KG+GKSFQCELVF MGI P+ MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLNLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVRMSA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P +LIR RYREAAD+IK +GKMC L IND+DAGAGR+ +TQYTVN Q+V
Sbjct: 64 GELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPT+VQLPG Y E RVPI++TGNDFSTLYAPL+RDGRMEKFYW PT+E
Sbjct: 124 NGTLMNIADNPTDVQLPGSYETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWEPTKE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIG+ +GIF+ D + ++++ +L+ FP QSIDFFGALR++VYD +VR +I E+GI ++
Sbjct: 184 DRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREIGINKVS 243
Query: 370 KRLVNSKEGPPTFEQ-PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
+VN+ + F+Q P L L++ G M+V EQ+ V+ L ++Y +
Sbjct: 244 THIVNNPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEYTT 292
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 223/286 (77%), Gaps = 2/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F DK+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFQDKLSVHITKNYLDLPKVRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRE
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPTRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + K+D+ +LVD F Q++DF+ ALR+R+YD+++R++I G++R+
Sbjct: 184 DKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRFIQNKGVDRVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
++VNS P+F++PK L L+E ++V+EQ+ V L ++Y
Sbjct: 244 SQVVNSN-NIPSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEY 288
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/292 (60%), Positives = 222/292 (76%), Gaps = 1/292 (0%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
SAGELES +AG+P +LIR RYREAA++IK +GKMC L INDLDAGAGRM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQTTQYTVNTQ 121
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPN 181
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 HEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
+ LVNS E + P +TLD L+ G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/334 (53%), Positives = 245/334 (73%), Gaps = 7/334 (2%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F++ + VHITKNFL LP VK+PLI GI G KG+GK+FQCELV+ +MG+N + +S
Sbjct: 4 YISPRFLNALAVHITKNFLELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAAD++K +G+M L INDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPTNVQLPG Y++ PR+PI+VTGNDF+TLYAPL+RDGRM+KFYW P R+
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDETPLPRIPIVVTGNDFATLYAPLVRDGRMQKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DR+G+ GIF D++ + DI LVDTFP Q+IDF+GALR+++YD+++ +I VG+E +
Sbjct: 184 DRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRVGVENVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD-A 428
+ +VN+K PP+F++P + L+E G+ LV+EQ ++ + L +Y AL ++ +
Sbjct: 244 RNVVNTKT-PPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEY--NQALNKVEENRS 300
Query: 429 IKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTA 462
NG++Y A Q VP +P A+ P
Sbjct: 301 NGNGNYY--RAYQPAPSVPLQPVEPNGASNTPAV 332
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/292 (60%), Positives = 222/292 (76%), Gaps = 1/292 (0%)
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
SAGELES +AG+P +LIR RYREAA++IK +GKMC L INDLDAGA RM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQTTQYTVNTQ 121
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P+
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPS 181
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 DEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
+ LVNS E + P + LD L+E G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALALDYLIELGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 229/357 (64%), Gaps = 81/357 (22%)
Query: 78 DISDDQQDITRGKGMVDTLFQAPMES--GTHYAVMSSYDYISQGLRHLDNTLDGLYIAPA 135
D+SDDQQDI RG+ MVD+LFQ GTH AV+SS +Y+S
Sbjct: 6 DVSDDQQDIARGRDMVDSLFQGFGSGIGGTHNAVLSSTEYLSTA---------------- 49
Query: 136 FMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 195
GK+FQC L + K+GI PI+MSAGELES
Sbjct: 50 ---------------------------------GKTFQCNLAYKKLGIAPIVMSAGELES 76
Query: 196 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 255
GNAGEPAKLIRQRYREA+D+IKKG+MC LFINDLDAGAGRMG TQYTVNNQMVNATLMN
Sbjct: 77 GNAGEPAKLIRQRYREASDVIKKGRMCSLFINDLDAGAGRMGDATQYTVNNQMVNATLMN 136
Query: 256 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 315
IADNPTNVQLPG+Y EE PRVPI DRIGVC
Sbjct: 137 IADNPTNVQLPGVYKNEEIPRVPI------------------------------DRIGVC 166
Query: 316 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 375
GIF+ DNV + D+ KLVD FPGQSIDFFGA+RARVYDD+V WI G+E IGKRL+NS
Sbjct: 167 MGIFQHDNVDRADVEKLVDAFPGQSIDFFGAIRARVYDDKVHDWIMGTGVENIGKRLINS 226
Query: 376 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 432
KEG TF++P M L L++YG +LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 227 KEGKVTFDKPSMDLGTLMKYGNLLVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 283
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 219/273 (80%), Gaps = 1/273 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F++K+ V ITKN+LN+P ++VPLILG+ G KG+GKSFQC+LVF KMGI +S
Sbjct: 4 YIAPRFLEKIAVFITKNYLNIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P++L+R RYRE A++I+ +GKMC + INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y++ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDRS 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ +GI+ D + +I +LVDTF QS+DFF ALR+R+YD+++R +I ++GIE++
Sbjct: 184 DKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKIGIEQVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 402
+R+VNS + PP F +PK L +L+E G ++V+E
Sbjct: 244 RRVVNSADRPPEFSKPKFNLSRLIEMGNLMVKE 276
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/297 (58%), Positives = 230/297 (77%), Gaps = 4/297 (1%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI+P F+DK+ +HITKN+L+LP+V+VP+ILG+ G KG+GK+FQCELV+ +MG+ + +S
Sbjct: 4 YISPRFLDKLAIHITKNYLSLPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA++++ +G M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPTNVQLPG Y+ + RVPII TGNDFSTLY PL+RDGRMEKFYW P R
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDDQPIRRVPIIATGNDFSTLYEPLVRDGRMEKFYWMPDRS 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRIG+ +GIF D + I +LVDTF Q++DFFGALRAR+YD++VR +I VG++++
Sbjct: 184 DRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVGLDKVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 426
+R+VNS E PTF +P TL L+E G+ +V EQ+ ++ ++L D+Y AL + ND
Sbjct: 244 QRVVNS-ETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQY--NRALREKND 297
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 226/286 (79%), Gaps = 2/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F++K+ VHITKN+L+LP VKVPLILGI G KG+GK+FQCELVF +MG+ + +S
Sbjct: 4 YIAPRFLNKLAVHITKNYLDLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA++++ +G+M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N TLMNIADNPTNVQLPG Y+++ PR+PII TGNDF+TLYAPLIRDGRM+KFYW P+ E
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDEKALPRIPIIATGNDFATLYAPLIRDGRMQKFYWQPSEE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DR+G+ G+F D + EDI +LV F Q++DFFGA+R+++YD+++ ++I +VGIE++
Sbjct: 184 DRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQVGIEKVA 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
+VN+ + PTF +P TLD L+ G LV+EQ+ V+ + L ++Y
Sbjct: 244 TNVVNTPQK-PTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP+F DK+ VHITKN+L L V+VPLILGI G KG+GKSFQCELVF +MGI I +S
Sbjct: 9 YIAPSFRDKLAVHITKNYLELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHISG 68
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYREAA++IK +GKMC L INDLDAG GR TTQYTVN Q+V
Sbjct: 69 GELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQLV 128
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
+ATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEK+YW P+RE
Sbjct: 129 SATLMNIADHPTDVQLPGSYDANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPSRE 188
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+RIG+ GIF D +P+ DI +LVD FP Q+IDFF ALR+R+YD ++ +I +VG++++
Sbjct: 189 ERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDVGLDQVS 248
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+V S E PP FE+P + L+E+G++++ EQ V++ L +Y
Sbjct: 249 FRVVRSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREY 294
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/287 (59%), Positives = 221/287 (77%), Gaps = 1/287 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YI P F+ V +H+TKN L LP+V VPLILGI G KG+GK+FQC L+F +M + + +S
Sbjct: 4 YIPPTFLKVVALHLTKNHLPLPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA++IR RYREAA+ I+K G+M L INDLDAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
+ATLMNIADNPTNVQLPG Y+ + PRVPII TGNDFSTLYAPLIRDGRM KFYW P+R
Sbjct: 124 SATLMNIADNPTNVQLPGSYDPKPLPRVPIIATGNDFSTLYAPLIRDGRMRKFYWEPSRT 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DRI + GIF+ D + E+I +LVD FP Q+IDFFGALRA++YD++V ++I EVG+E I
Sbjct: 184 DRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEVGLEGIA 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RL+ SKEG P F P+ +L++L++ G L EQ V+ +L+++YL
Sbjct: 244 FRLLKSKEGAPQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/286 (59%), Positives = 220/286 (76%), Gaps = 2/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F++K+ VHITKNFL+LP + PLILGI G KG+GKSFQCELVF +M + I +SA
Sbjct: 4 YIAPRFLNKLAVHITKNFLDLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHLSA 63
Query: 191 GELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+P++L+R RYREAADII K GK+ L IND+DAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPTNVQLPG Y+ E PRVPIIVTGNDF TLYAPL+RDGRM+KFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEPNRE 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
DR+ + +GIF D + ++ I +LV F GQSIDFF ALRA +YD+++ +I + G ++IG
Sbjct: 184 DRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQTGFDKIG 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
++ NS E +F +P L+ L+E G +V+EQ++++ ++L Y
Sbjct: 244 LKVANSTE-KHSFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAY 288
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/190 (86%), Positives = 181/190 (95%)
Query: 249 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 308
VNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 60
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 368
+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E I
Sbjct: 61 DDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENI 120
Query: 369 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDA 428
GKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA
Sbjct: 121 GKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDA 180
Query: 429 IKNGSFYGKA 438
+K GSFYG A
Sbjct: 181 MKTGSFYGSA 190
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 225/473 (47%), Positives = 258/473 (54%), Gaps = 119/473 (25%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSS--YDYISQG 119
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A + + G
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPG 112
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
H HI+KN + LPN+ QGKSFQCELVFA
Sbjct: 113 QHH-------------------GHISKNLMKLPNI-------------QGKSFQCELVFA 140
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
KMGIN IMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMSAGELESGNAGEPAKLIRQRYREAADMINKGKMCLLFINDLDAG------- 193
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR-VPIIVTGNDFSTLYAPLIRDGR 298
V+ + + AD + G +Q PR V + PLIRDGR
Sbjct: 194 RHDAVHGEQPDGE--RDAD-----EHRGQPHQRAAPRDVQPPCPHHRHRQRLLPLIRDGR 246
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+KFYWAPTREDRIGVC GIFR+D VP D FP S
Sbjct: 247 MDKFYWAPTREDRIGVCRGIFRSDKVP--------DAFPSTSSG---------------- 282
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
R G+ G +EQENVKRV+LADKYLSE
Sbjct: 283 --------RCGR-------------------------GCTATREQENVKRVRLADKYLSE 309
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 471
AALGDAN D+ G FYGKAAQQ VPVP GCTD AANYDPTARSDDGSC Y
Sbjct: 310 AALGDANHDS---GEFYGKAAQQSPVPVPAGCTDQRAANYDPTARSDDGSCVY 359
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/201 (80%), Positives = 180/201 (89%)
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 332
ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+
Sbjct: 1 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 60
Query: 333 VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKL 392
VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKMT++KL
Sbjct: 61 VDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKL 120
Query: 393 LEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTD 452
LEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYGK AQQ +PVP GCTD
Sbjct: 121 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYGKGAQQGTLPVPAGCTD 180
Query: 453 PAAANYDPTARSDDGSCNYQF 473
A N+DPTARSDDGSC Y F
Sbjct: 181 QTAKNFDPTARSDDGSCLYTF 201
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 235/344 (68%), Gaps = 13/344 (3%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D ++T G G+VD LF V +DY + R + YIAPAF+DK
Sbjct: 90 DNLNVTVGARAGIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPAFLDK 146
Query: 140 VVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 197
V HI KN++ L N+K+PLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGELES
Sbjct: 147 VACHIVKNYIGHLLNNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESEK 206
Query: 198 AGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
AGEP +LIR RYR A+ +I+ +GK+ CL INDLDAG GR G TQ TVNNQ+ TLMN+
Sbjct: 207 AGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTLMNL 265
Query: 257 ADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 315
ADNP V + + + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRED I +
Sbjct: 266 ADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTREDIISIV 325
Query: 316 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVN 374
G++R D + E++ ++VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ +L+
Sbjct: 326 HGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAKLLK 385
Query: 375 SKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
K+G PTF PK +L+ L+E G LV+EQE + +L+ +Y+
Sbjct: 386 RKKGEELPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEYM 429
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/187 (86%), Positives = 177/187 (94%)
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
MVNATLMNIADNPTNVQLPGMYN+E+NPRVPI+VTGND STLYAPLIRDGRMEKFYWAPT
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAPT 60
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
REDRIGVC GIF+TDNV +E +V +VDTFPGQSIDFFGALRARVYDDEVRKWIS VG++
Sbjct: 61 REDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDL 120
Query: 368 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD 427
IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLVQEQENV+RVQLADKYL+EAALG+ANDD
Sbjct: 121 IGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYLNEAALGNANDD 180
Query: 428 AIKNGSF 434
AIK G+F
Sbjct: 181 AIKRGTF 187
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 163/310 (52%), Positives = 227/310 (73%), Gaps = 7/310 (2%)
Query: 113 YDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKS 171
+DY + R ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQGKS
Sbjct: 113 FDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQGKS 172
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230
FQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+D
Sbjct: 173 FQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 232
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTL 289
AG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFST+
Sbjct: 233 AGIGRFG-QTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFSTI 291
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q++DF+GALR+
Sbjct: 292 YAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGALRS 351
Query: 350 RVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENV 406
R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ+ +
Sbjct: 352 RTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQLI 411
Query: 407 KRVQLADKYL 416
+L+ +Y+
Sbjct: 412 METKLSKEYM 421
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 231/332 (69%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G+VD+LF V +DY + R + YIAP F+DKVV HI KN+L
Sbjct: 96 GVVDSLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQGDYYIAPLFLDKVVCHIVKNYLA 152
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
+ NVKVPLILGIWGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP +LIR+RY
Sbjct: 153 HRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGRLIRERY 212
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +++ +GKM CL INDLDAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 RTASQVVQNQGKMSCLMINDLDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 271
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFST+YAPLIRDGRMEKFYW P RED + + ++ D + ++
Sbjct: 272 WRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRD 331
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQ 384
++V +V+ FP Q++DF+GALR+R YD + KW+ ++ GIE +GK+L+ K E P F
Sbjct: 332 EVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIENLGKQLLRRKKDEKLPEFTP 391
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 392 PEQTMEALLESGHSLIREQQLIMETKLSKEYM 423
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/178 (91%), Positives = 170/178 (95%), Gaps = 2/178 (1%)
Query: 92 MVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFL 149
MVD+LFQAP +GTHYAVMSSYDYIS+GLR DNT+ G YIAPAFMDK+VVHITKNFL
Sbjct: 1 MVDSLFQAPQMAGTHYAVMSSYDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFL 60
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
NLPN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct: 61 NLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 120
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
REA+DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG
Sbjct: 121 REASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 178
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 174/332 (52%), Positives = 228/332 (68%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G+VD LF V +DY + R + YIAP F+DKV HI KN+L
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPLFLDKVACHIVKNYLA 165
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 166 HILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRY 225
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 226 RTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQK 284
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + E
Sbjct: 285 WRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGLSFE 344
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQ 384
D+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PTF
Sbjct: 345 DVSKIVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPTFIP 404
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 405 PKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 228/332 (68%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G++D LF V +DY + R + YIAP FMDKVV HI KN++
Sbjct: 110 GIIDDLFVGNFLGRDSDIV---FDYRQKVTRSFEYLQGDYYIAPVFMDKVVCHIVKNYIA 166
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
+L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 167 HLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 226
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+ TLMN++DNPT V +
Sbjct: 227 RTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQIAVGTLMNLSDNPTRVSIGQD 285
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT ED I + ++ D + ++
Sbjct: 286 WRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKDGISRD 345
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQ 384
+V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E +G +L+ + E P F
Sbjct: 346 AVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKLPVFVP 405
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 406 PKQTIDALLESGYSLIKEQQLIMETKLSKEYM 437
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 174/332 (52%), Positives = 228/332 (68%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G+VD LF V +DY + R + YIAP F+DKV HI KN+L
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPLFLDKVACHIVKNYLA 165
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 166 HILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRY 225
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 226 RTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQK 284
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + E
Sbjct: 285 WRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFE 344
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQ 384
D+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PTF
Sbjct: 345 DVSKVVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPTFIP 404
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 405 PKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/332 (50%), Positives = 228/332 (68%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLN 150
GM+D +F V +DY + R ++ YIAP+F+DKV VHI KN+L
Sbjct: 100 GMIDDVFIGDFLGKDSDIV---FDYRQKATRSFEHLQGDYYIAPSFLDKVAVHIVKNYLA 156
Query: 151 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
N+K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 157 PSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRY 216
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 217 RTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQE 275
Query: 269 YNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D + ++
Sbjct: 276 WREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRK 335
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQ 384
D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ K+ P F
Sbjct: 336 DVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTA 395
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 396 PEQTVEALLESGYSLINEQKLIMETKLSKEYM 427
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/332 (50%), Positives = 229/332 (68%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLN 150
GM+D +F V +DY + R ++ YIAP+F+DKV VHI KN+L
Sbjct: 87 GMIDDVFIGDFLGKDSDIV---FDYRQKATRSFEHLQGDYYIAPSFLDKVAVHIVKNYLA 143
Query: 151 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
N+K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 144 PSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRDRY 203
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 204 RTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVGQE 262
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D + ++
Sbjct: 263 WREADIVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRK 322
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQ 384
D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ SK+ P F
Sbjct: 323 DVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEVPQFTP 382
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 383 PEQTVEALLESGYSLINEQKLIMETKLSKEYM 414
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/343 (49%), Positives = 233/343 (67%), Gaps = 12/343 (3%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +I G+ G++D LF V +DY + R YIAP FMDK
Sbjct: 78 DNMNIAVGQRAGVIDDLFAGNFLGKDSDIV---FDYRQKATRSFQYLQGYYYIAPLFMDK 134
Query: 140 VVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
VV HI KN+L +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES A
Sbjct: 135 VVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFHAMGMEPVIMSAGELESERA 194
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++
Sbjct: 195 GEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLS 253
Query: 258 DNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED +
Sbjct: 254 DNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNIVH 313
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNS 375
++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E G +++
Sbjct: 314 RMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGTKILKR 373
Query: 376 K--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
+ + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 374 RKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 416
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 225/311 (72%), Gaps = 8/311 (2%)
Query: 113 YDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKS 171
+DY + R ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQGKS
Sbjct: 113 FDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQGKS 172
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230
FQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+D
Sbjct: 173 FQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 232
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTL 289
AG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFST+
Sbjct: 233 AGIGRF-GQTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFSTI 291
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ-SIDFFGALR 348
YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q + F+GALR
Sbjct: 292 YAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQGNFGFYGALR 351
Query: 349 ARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
+R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ+
Sbjct: 352 SRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQL 411
Query: 406 VKRVQLADKYL 416
+ +L+ +Y+
Sbjct: 412 IMETKLSKEYM 422
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 233/346 (67%), Gaps = 13/346 (3%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +IT G GM+D+LF V +++ H+ YIAPAFMDK
Sbjct: 104 DNLNITVGARTGMIDSLFTGDFLGKEADIVFKYRQKVTRSFEHITGDY---YIAPAFMDK 160
Query: 140 VVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
VV HI KN+L + KVPLILG+WGGKGQGKSFQ EL+F MGI PI+MSAGE+ES A
Sbjct: 161 VVTHIVKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIFKAMGIEPIIMSAGEMESEWA 220
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP KLIR+RYR A +I +GKM CL INDLDAG GR TQ TVNNQMV TLMN+A
Sbjct: 221 GEPGKLIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFE-NTQMTVNNQMVVGTLMNLA 279
Query: 258 DNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNP V + + + + RVPIIVTGNDFST++APLIRDGRM+KFYW PTR+D + +
Sbjct: 280 DNPNRVSVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGRMDKFYWQPTRDDLVKIVY 339
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNS 375
+++ D + + DI ++DTFP Q++DF+GALR+R YD V +W++E+ G E+IG +L+
Sbjct: 340 QMYKKDGLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLEWVNEIGGAEQIGPKLLRR 399
Query: 376 KEGP---PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
K+G P F P+ +D L++ G LV+EQ V ++L+D+Y+ +
Sbjct: 400 KKGDAPLPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDEYMKK 445
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 170/343 (49%), Positives = 233/343 (67%), Gaps = 12/343 (3%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +I G+ G++D+LF V +DY + R YIAP FMDK
Sbjct: 85 DNMNIAVGQRAGVIDSLFAGNFLGKDSDIV---FDYRQKVTRSFQYLQGDYYIAPLFMDK 141
Query: 140 VVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
VV HI KN+L + N KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES A
Sbjct: 142 VVCHIVKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 201
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++
Sbjct: 202 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLS 260
Query: 258 DNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNPT V + + + + R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 261 DNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNIVH 320
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNS 375
++ D++ ++++ ++V+TFP Q++DF+GALR+R YD + KWI ++ G+E G +L+
Sbjct: 321 RMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKLLKR 380
Query: 376 K--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
+ + P F P+ T+D LLE G L++EQ + +L+ +Y+
Sbjct: 381 RKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYM 423
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/343 (48%), Positives = 233/343 (67%), Gaps = 12/343 (3%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +IT G G++D LF V +DY + R + YIAP F+D+
Sbjct: 113 DNTNITVGARPGVIDDLFTGNFLGRDSDIV---FDYRQKVTRSFEYLRGDYYIAPVFLDQ 169
Query: 140 VVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
VV HI KNF+ +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGE+ES A
Sbjct: 170 VVCHIVKNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGEMESEKA 229
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP +LIR+RYR A+ +++ GK+ CL INDLDAG GR G TQ TVNNQ TLMN+A
Sbjct: 230 GEPGRLIRERYRAASQVVQNHGKLSCLMINDLDAGIGRFG-NTQVTVNNQTAAGTLMNLA 288
Query: 258 DNPTNVQLPGMYNQEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNPT V + + + + R+P+IVTGNDFST+YAPLIRDGRM+KFYW PT +D + +
Sbjct: 289 DNPTRVSIGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPTHDDIVNIVH 348
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNS 375
++ D + +++V +V+TFP Q++DF+GA+R+R YD V KW+ ++ GI+ +G +L+
Sbjct: 349 RMYEKDGISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGIDNLGAKLLQL 408
Query: 376 KEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
++G P F P+ ++ LLE G L++EQ+ + + +LA +Y+
Sbjct: 409 RKGDELPVFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYM 451
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 174/347 (50%), Positives = 228/347 (65%), Gaps = 25/347 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G+VD LF V +DY + R + YIAP F+DKV HI KN+L
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPLFLDKVACHIVKNYLA 165
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 166 HILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRY 225
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 226 RTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQK 284
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + E
Sbjct: 285 WRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGLSFE 344
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERIGKR 371
D+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++ ++
Sbjct: 345 DVSKIVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEK 404
Query: 372 LVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 405 LLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/347 (50%), Positives = 228/347 (65%), Gaps = 25/347 (7%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G+VD LF V +DY + R + YIAP F+DKV HI KN+L
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPLFLDKVACHIVKNYLA 165
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 166 HILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRY 225
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 226 RTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQK 284
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + E
Sbjct: 285 WRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFE 344
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERIGKR 371
D+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++ ++
Sbjct: 345 DVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEK 404
Query: 372 LVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 405 LLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 166/332 (50%), Positives = 225/332 (67%), Gaps = 12/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G++D LF V +DY + R + YIAP FM + HI KN++
Sbjct: 110 GIIDDLFVGNFLGRDSDIV---FDYRQKVTRSFEYLQGDYYIAPVFM--AMCHIVKNYIA 164
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
+L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RY
Sbjct: 165 HLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 224
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+ TLMN++DNPT V +
Sbjct: 225 RTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQIAVGTLMNLSDNPTRVSIGQD 283
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT ED I + ++ D + ++
Sbjct: 284 WRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKDGISRD 343
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQ 384
+V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E +G +L+ + E P F
Sbjct: 344 AVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKLPVFVP 403
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 404 PKQTIDALLESGYSLIKEQQLIMETKLSKEYM 435
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 222/332 (66%), Gaps = 10/332 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL- 149
G++D LF V +DY + R + YIAP+F+DKV HI KN+L
Sbjct: 105 GIIDDLFVGKFLGRDSDIV---FDYRQKVTRKFEYLQGDYYIAPSFLDKVACHIVKNYLA 161
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
N N+KVPLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RY
Sbjct: 162 NNLNIKVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESERAGEPGRLIRDRY 221
Query: 210 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
R A+ +I+ +GKM CL INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 222 RTASQVIQNQGKMSCLMINDLDAGVGRFG-NTQMTVNNQIVVGTLMNLADNPTRVSIGQK 280
Query: 269 YNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
+ + + RVPII TGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + E
Sbjct: 281 WRESDITHRVPIIATGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYMKDGLSFE 340
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG---IERIGKRLVNSKEGPPTFEQ 384
++ ++VDTFP Q++DF+GALR+R YD + +W++++G +E PTF
Sbjct: 341 EVSRIVDTFPNQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKKKKREKLPTFIP 400
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
PK TLD L+E G LV+EQE + +L+ +Y+
Sbjct: 401 PKPTLDALIESGDSLVKEQELIMNSKLSKEYM 432
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/310 (50%), Positives = 217/310 (70%), Gaps = 7/310 (2%)
Query: 113 YDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKS 171
+DY + R YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+
Sbjct: 105 FDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKT 164
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230
FQ EL+F MG+ P++MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+D
Sbjct: 165 FQTELIFRAMGVEPVIMSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDID 224
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTL 289
AG GR G TQ TVNNQ+V TLMN+ DNPT V + + + + R+PIIVTGND ST+
Sbjct: 225 AGLGRFG-NTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTI 283
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRM+KFYW P +ED + + ++ D + ++++ K+V TFP Q++DF+GALR+
Sbjct: 284 YAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRS 343
Query: 350 RVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENV 406
R YD + KW+ ++ G E + + + + P F P+ T+D LLE G L++EQ+ +
Sbjct: 344 RTYDRSILKWVDDIGGAESFTSKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLI 403
Query: 407 KRVQLADKYL 416
+L+ +Y+
Sbjct: 404 METKLSKEYM 413
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 164/170 (96%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DNT+DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNTVDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 162/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+EENP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 171
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/310 (50%), Positives = 218/310 (70%), Gaps = 8/310 (2%)
Query: 113 YDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKS 171
+DY + R + YIAP F+ ++ HI KN++ +L NVKVPLILGIWGGKGQGKS
Sbjct: 116 FDYRQKVTRSFEYLKGDYYIAPVFL-VMICHIVKNYIAHLLNVKVPLILGIWGGKGQGKS 174
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230
FQ ELVF MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+D
Sbjct: 175 FQTELVFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 234
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTL 289
AG GR G TQ TVNNQ+V TLMN+ DNPT V + + + R+PIIVTGNDFST+
Sbjct: 235 AGLGRFG-NTQMTVNNQIVVGTLMNLVDNPTRVSTGQDWRESDITNRIPIIVTGNDFSTI 293
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRMEKF+W P +ED + + ++ D + ++++V +V TFP Q++DF+GALR+
Sbjct: 294 YAPLIRDGRMEKFFWQPNQEDIVNIVHRMYEKDGISRDEVVSIVKTFPNQALDFYGALRS 353
Query: 350 RVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENV 406
R YD + KWI ++ G+E +G +L+ + E P + P+ T++ L E G L++EQ+ +
Sbjct: 354 RTYDMSISKWIDDIGGVENLGNKLLKRRKNETLPVYTPPEQTVEALFESGYSLIREQQLI 413
Query: 407 KRVQLADKYL 416
+L+ +Y+
Sbjct: 414 METKLSKEYM 423
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 163/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AVMSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 163/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 162/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 162/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/169 (88%), Positives = 162/169 (95%), Gaps = 2/169 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AVMSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+N
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDN 170
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 162/170 (95%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AVMSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGM N+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMNNKEDNP 171
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 149/170 (87%), Positives = 161/170 (94%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLP MYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPCMYNKEDNP 171
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 224/346 (64%), Gaps = 22/346 (6%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLN 150
GM+D++F + H + ++ + R +N + YIAP F++K+ +HI KNFL
Sbjct: 80 GMIDSIFTGNVLG--HKSDIADGSLRTYEFRTYNNIVGDYYIAPRFLEKIALHIAKNFLL 137
Query: 151 L-----PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
+VPLILGIWGGKGQGK+FQ EL F K+G+ PI+MSAGELE+ AG P KLI
Sbjct: 138 EFGALDSATRVPLILGIWGGKGQGKTFQTELCFKKLGVEPIIMSAGELENEWAGVPGKLI 197
Query: 206 RQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 264
R+RYR AA++ K GK+ CL INDLDAG G TQ TVNNQMV TLMNI DNPT +
Sbjct: 198 RERYRRAAEVSKVHGKLSCLMINDLDAGIGHFE-NTQITVNNQMVVGTLMNICDNPTRIS 256
Query: 265 L-PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 323
+ G + R+PIIVTGNDFST++APL+RDGRM+KFYW PT ED +G+ +++ D
Sbjct: 257 IGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGRMDKFYWQPTEEDLVGILHQMYKDDG 316
Query: 324 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE-----------RIGKRL 372
+ + D+ L+ FPGQ++DFFGALR+ YD ++R+WI + I +G+RL
Sbjct: 317 LSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQWIKQDVIHGEIAEDNQNMRELGRRL 376
Query: 373 VNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
+ +E P FE +TL L+E GR L EQ+ V ++L+D+YL +
Sbjct: 377 LR-QEDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNSMRLSDEYLKK 421
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/170 (87%), Positives = 160/170 (94%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
A+MSSY+YIS GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESG AGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGKAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDL+AGAGRMGGTTQYTVNNQMVNATLMNIA NPT VQLPGMYN+EENP
Sbjct: 122 INDLEAGAGRMGGTTQYTVNNQMVNATLMNIAHNPTCVQLPGMYNKEENP 171
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/158 (93%), Positives = 153/158 (96%)
Query: 174 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233
CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGA
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGA 60
Query: 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293
GRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPL
Sbjct: 61 GRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 120
Query: 294 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 331
IRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK
Sbjct: 121 IRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 158
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/150 (96%), Positives = 150/150 (100%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
LG+WGGKGQG+SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 60
Query: 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
KMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPI
Sbjct: 61 KMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 120
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
IVTGNDFSTLYAPLIRDGRM+KFYWAPTRE
Sbjct: 121 IVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 229/343 (66%), Gaps = 12/343 (3%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +IT G +GM+D++F V + +++ HL YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDSVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDY---YIAPAFL-- 128
Query: 140 VVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGE+ES A
Sbjct: 129 VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERA 188
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN+A
Sbjct: 189 GEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMNLA 247
Query: 258 DNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 248 DNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVY 307
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLVNS 375
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ + S
Sbjct: 308 RMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFRQS 367
Query: 376 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
K+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 368 KKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 228/343 (66%), Gaps = 12/343 (3%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139
D +IT G +GM+D +F V + +++ HL YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDNVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDY---YIAPAFL-- 128
Query: 140 VVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 198
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGE+ES A
Sbjct: 129 VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERA 188
Query: 199 GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257
GEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN+A
Sbjct: 189 GEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMNLA 247
Query: 258 DNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 316
DNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 248 DNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVY 307
Query: 317 GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLVNS 375
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ + S
Sbjct: 308 RMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFRQS 367
Query: 376 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
K+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 368 KKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/170 (85%), Positives = 159/170 (93%), Gaps = 2/170 (1%)
Query: 108 AVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165
AV+SSY +S GLR + DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVLSSYQNLSTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
INDLDAGAGRMGGTTQ+TVNNQMVNATLMNIADNPT VQLPG YN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQFTVNNQMVNATLMNIADNPTCVQLPGRYNKEDNP 171
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 156/326 (47%), Positives = 214/326 (65%), Gaps = 24/326 (7%)
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQC 174
R N + Y++P F+D V +HI KN++ P+ +VPLILGIWG KGQGK+FQ
Sbjct: 71 FRSFANIVGDYYVSPRFLDAVAMHIVKNWMVDNGAFDPSHRVPLILGIWGPKGQGKTFQT 130
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 233
EL F K+GI P++MSAGELES AG P +LIR RYR AA++ K +G++ CL INDLDAG
Sbjct: 131 ELTFKKLGIEPVVMSAGELESEWAGAPGRLIRDRYRRAAEVAKVRGRLPCLMINDLDAGV 190
Query: 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAP 292
G + Q TVNNQMV+ TLMN+ DNP V + ++ + RVPIIVTGNDFSTL+AP
Sbjct: 191 G-IQENVQRTVNNQMVSGTLMNLCDNPNRVSVFQVWRDSDLVQRVPIIVTGNDFSTLFAP 249
Query: 293 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 352
L+RDGRM KFYW P R D + + +++ D + ED L+DTFPGQS+DFFGALRA Y
Sbjct: 250 LVRDGRMAKFYWEPDRIDLLNILHQMYKEDGLSVEDTQTLLDTFPGQSLDFFGALRAATY 309
Query: 353 DDEVRKWISE-----------VGIERIGKRLVNS-----KEGPPTFEQPKMTLDKLLEYG 396
D+++R+WI E + + KRL++ ++ P+FE + L+ LL+ G
Sbjct: 310 DNQIRRWIKEEVVKADITDEDANMRELSKRLIDHMHVVRRKDLPSFEPVDLKLEDLLKEG 369
Query: 397 RMLVQEQENVKRVQLADKYLSEAALG 422
L +EQENV R++L+++Y+ + G
Sbjct: 370 HRLAEEQENVNRLKLSEEYMKNSGGG 395
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 217/351 (61%), Gaps = 48/351 (13%)
Query: 113 YDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKS 171
+DY + R YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+
Sbjct: 105 FDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKT 164
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230
FQ EL+F MG+ P++MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+D
Sbjct: 165 FQTELIFRAMGVEPVIMSAGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDID 224
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTL 289
AG GR G TQ TVNNQ+V TLMN+ DNPT V + + + + R+PIIVTGND ST+
Sbjct: 225 AGLGRFG-NTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTI 283
Query: 290 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 349
YAPLIRDGRM+KFYW P +ED + + ++ D + ++++ K+V TFP Q++DF+GALR+
Sbjct: 284 YAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRS 343
Query: 350 RVYDDEVRK-----------------------------------------WISEV-GIER 367
R YD + K W+ ++ G E
Sbjct: 344 RTYDRSILKGVELEEKPLSKESPVSYLLCTSNAVGITHTDRLIPQHLPTPWVDDIGGAES 403
Query: 368 IGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
+ + + + P F P+ T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 404 FASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 454
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 183/236 (77%), Gaps = 1/236 (0%)
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGT 239
MG+ ++S GELES +AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
TQYTVN Q+VNATLMNIAD+PT+VQLPG Y+ + RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPIRRVPIIVTGNDFSTLYAPLIRDGRM 120
Query: 300 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
EKFYW P +D++G+ GIF D + +I +LV+TFP QSIDFF ALR+R+YD+++R +
Sbjct: 121 EKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRDF 180
Query: 360 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
I E+G +R+ R+VNS E PP F++P+ TL L+E G ++V EQ++V+ L +Y
Sbjct: 181 IHEIGYDRVSMRVVNSMEPPPQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 213/346 (61%), Gaps = 44/346 (12%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLN 150
G+VD LF V +DY + R + YIAP F+DKV
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEYLQGDYYIAPLFLDKV---------- 155
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
GIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR
Sbjct: 156 ----------GIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYR 205
Query: 211 EAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + +
Sbjct: 206 TASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIGQKW 264
Query: 270 NQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKED 328
+ + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D + ED
Sbjct: 265 RESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLSFED 324
Query: 329 IVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERIGKRL 372
+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++ ++L
Sbjct: 325 VSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLNEKL 384
Query: 373 VNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 385 LKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 430
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 193/284 (67%), Gaps = 3/284 (1%)
Query: 127 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186
+ G +I F D++++HI KN+ LP V+ PLILGI G KG+GKSF + V ++ N I
Sbjct: 1 MAGYFIPDRFRDRIILHIAKNYAALPKVQTPLILGIHGPKGEGKSFMVDRVLQELQANVI 60
Query: 187 MMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVN 245
++S+ ELES +AGEP +LIR RYREAA+++K +G++ + I+D+DAGAG TTQYTVN
Sbjct: 61 VISSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQYTVN 120
Query: 246 NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 305
Q+VNA LM IADNPTNVQLPG Y+ PR+P +VTGNDFS LYAPL+RDGRM KF W
Sbjct: 121 TQLVNAALMAIADNPTNVQLPGSYDPTPLPRIPFVVTGNDFSKLYAPLVRDGRMSKFSWE 180
Query: 306 PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 363
PT ++ + + +F D + D+ +L+ F Q +DFF A+R+R YDD + + +
Sbjct: 181 PTFAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQVKAW 240
Query: 364 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVK 407
G+E + + LVN PP FE ++ LD+ L +G ++ +Q+ ++
Sbjct: 241 GLENVSRNLVNHGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAIE 284
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 149/159 (93%)
Query: 315 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN 374
C+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG++ +GK+LVN
Sbjct: 2 CTGIFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGVGKKLVN 61
Query: 375 SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 434
SKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL+EAALGDAN DAIK+GSF
Sbjct: 62 SKEGPPTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKSGSF 121
Query: 435 YGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
YGKAAQQ+ VPVPEGCTDP A+N+DPTARSDDG+C Y F
Sbjct: 122 YGKAAQQIGVPVPEGCTDPNASNFDPTARSDDGTCLYTF 160
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 207/344 (60%), Gaps = 24/344 (6%)
Query: 93 VDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL--- 149
+D+LF E H + ++ + R +N + Y+APAF+ KV +H+ KN+L
Sbjct: 129 IDSLFAG--EVLGHKSDIADGSLRAVDFRVFNNIVGDYYVAPAFLMKVAMHMAKNYLFDL 186
Query: 150 --NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
N +VPLILGIWG KG GK+FQ EL K+G ++MS+GELE AG P KLIR+
Sbjct: 187 GAMSANTRVPLILGIWGEKGMGKTFQTELALKKLGAETVVMSSGELEHEWAGTPGKLIRE 246
Query: 208 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
RYR+A+++ K +GKM L I+D+DAG G Q TVNNQ+V TLMNI DNP NV
Sbjct: 247 RYRKASEMSKVRGKMTALLIHDIDAGLGHFD-HVQVTVNNQIVIGTLMNICDNP-NVVST 304
Query: 267 GM--YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 324
G + R PIIVTGNDFS ++APLIRDGRM+K+YW PTRED + + +++ D +
Sbjct: 305 GQDWFAVSRIRRTPIIVTGNDFSKMFAPLIRDGRMDKYYWKPTREDMVNIVLQMYQDDGI 364
Query: 325 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE-----------VGIERIGKRLV 373
+ D+ L+D F Q +DF+GALRA YD+++R WI + + K L+
Sbjct: 365 TRRDVEALLDRFRHQPLDFYGALRASTYDEQIRDWIKTDVTGEEFIADAANLSNMAKTLL 424
Query: 374 N-SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
+ + P FE ++TLD L+ G L EQ+ V +L+++YL
Sbjct: 425 SVDRSEMPKFEPVRLTLDMLVAEGERLEMEQQQVNDHKLSEQYL 468
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 124/135 (91%), Positives = 130/135 (96%)
Query: 191 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 250
GELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN
Sbjct: 4 GELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 63
Query: 251 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 310
ATLMNIADNPT+VQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDGRMEK +WAP RED
Sbjct: 64 ATLMNIADNPTSVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAPNRED 123
Query: 311 RIGVCSGIFRTDNVP 325
RIGVC GIFRTDN P
Sbjct: 124 RIGVCMGIFRTDNCP 138
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 221/382 (57%), Gaps = 27/382 (7%)
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E + T +D L S+ + ++ KG+VD +F + ++ + + D +
Sbjct: 78 AEETHARGTGEDYLYELGRQSSNLRTEVGARKGVVDDVFAGT--ANANFVLGADADIATG 135
Query: 119 GLRH-----LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQ 173
LR+ L N +DG Y+ P FMDKV VH+ KN L +VPLILGIWG KG GKS+
Sbjct: 136 ELRYTEARSLTNVVDGCYVPPRFMDKVCVHLVKNHLAEGVGQVPLILGIWGEKGCGKSYT 195
Query: 174 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--------GKMCCLF 225
EL M +PI++SAGELE AG P + IR+RYR A+ ++ + G++ CL
Sbjct: 196 LELCLRAMRASPIIVSAGELEDEWAGAPGRRIRERYRAASRLMSQARSISTLTGRLACLV 255
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP--RVPIIVTG 283
INDLDAGAG TQ TVN QMV TLMN+ D+PT+V + +E+ RVPII+TG
Sbjct: 256 INDLDAGAGTYRA-TQKTVNMQMVMGTLMNLCDHPTSVSVGAEEWREDRELRRVPIIITG 314
Query: 284 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS--- 340
ND STLYAPL+RDGRM+KF WAP+ ++R + V D ++LV F Q+
Sbjct: 315 NDLSTLYAPLLRDGRMDKFMWAPSIDERAAAVHAVMADAGVTARDALELVRAFSNQARSP 374
Query: 341 IDFFGALRARVYDDEVRKWISEVGIER-IGKRLV----NSKEGPPT-FEQPKMTLDKLLE 394
+DFFGAL AR D V +WI+ G R +G L+ +++ P ++TL+ LLE
Sbjct: 375 LDFFGALHARTVDAAVLEWIARNGGARGMGDALLRGDARTRKAPSVDRSSSRLTLEALLE 434
Query: 395 YGRMLVQEQENVKRVQLADKYL 416
GR L +EQ+ V V+L D+Y+
Sbjct: 435 IGRELEREQQRVLDVRLVDEYM 456
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 136/145 (93%)
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N+E+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTDN+ I
Sbjct: 1 NKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAI 60
Query: 330 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 389
VK+VD+FPGQSI+FFGALRARVYDDEVRKWI EVG+E IGK+LVNS++GPPTFE+P MT+
Sbjct: 61 VKIVDSFPGQSINFFGALRARVYDDEVRKWIGEVGVEGIGKKLVNSRDGPPTFEKPAMTV 120
Query: 390 DKLLEYGRMLVQEQENVKRVQLADK 414
+KLLEYG MLV+EQENVKRVQLADK
Sbjct: 121 EKLLEYGNMLVKEQENVKRVQLADK 145
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 6/240 (2%)
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTT 240
GI PI+MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G T
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFG-NT 59
Query: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRM 299
Q TVNNQ+ TLMN++DNPT V + + + + R+P+IVTGNDFSTLYAPLIRDGRM
Sbjct: 60 QVTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRM 119
Query: 300 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
EKFYW PT ED I + ++ D + ++ + +VD+FP Q++DF+GALR+R YD KW
Sbjct: 120 EKFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKW 179
Query: 360 ISEV-GIERIGKRLVNS-KEGP-PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
I E+ G E + +L+ KEG PTF PK TL+ LLE G L++EQE + +L+ +Y+
Sbjct: 180 IDEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYM 239
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 172/241 (71%), Gaps = 6/241 (2%)
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGT 239
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM L IND+DAG GR G
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 59
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGR 298
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 60 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGR 119
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYW PTRED + + S ++ D + ++D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 120 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 179
Query: 359 WISEV-GIERIGKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
W+ E G+E +GK L+ K+ P F P+ T++ LLE G L+ EQ+ + +L+ +Y
Sbjct: 180 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEY 239
Query: 416 L 416
+
Sbjct: 240 M 240
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 194/319 (60%), Gaps = 22/319 (6%)
Query: 108 AVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL----NLPNVKVPLILGIW 163
A ++S ++ G R N Y+ FM++V H+ KN L L + K ++LGIW
Sbjct: 63 ADVASGEHREGGFRSFGNVEGEFYVPERFMERVATHVAKNLLADRDGLRSAKPAVMLGIW 122
Query: 164 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMC 222
G KG GK+F EL +MG+ PI+ SAGELE G AGEP ++R+RY AA +++ G++
Sbjct: 123 GHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLRRRYLTAARAMRETGRLS 182
Query: 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE---ENPRVPI 279
CL IND+DAG GR TVNNQ+ + TLMNI DNPT V + + N RVPI
Sbjct: 183 CLIINDIDAGIGRFRDDLG-TVNNQITHGTLMNICDNPTLVSEGNAWRHDAKMTNARVPI 241
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC-SGIFRTDNVPKEDIVKLVDTFPG 338
IVTGNDFS LYAPL RDGRM+ W +C + I + D + ++D LVDTFP
Sbjct: 242 IVTGNDFSRLYAPLTRDGRMD--LW---------ICYTAITKDDGLSEKDCETLVDTFPQ 290
Query: 339 QSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP-PTFEQPKMTLDKLLEYGR 397
Q +DFFGA+RARVYDD VR +I +VG+ + + LV E T + +L++L++ G
Sbjct: 291 QPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRKTLGKVNASLERLIQAGH 350
Query: 398 MLVQEQENVKRVQLADKYL 416
L +EQENV +QLA +Y+
Sbjct: 351 ELCEEQENVSNIQLAREYM 369
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 184/292 (63%), Gaps = 26/292 (8%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRH-----LDNTLDGLYIAPAFMDKVVVHIT 145
G+VD +F ++ + + + + D S LR+ +N + ++ F+D+V +HI
Sbjct: 108 GVVDDVFAG--KNNSKFNLGADSDIASGKLRYTMERSFNNLVGEFHVPKQFVDRVALHIA 165
Query: 146 KNFL-----------NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
KN L L +VPLILGIWG KG GK+F EL +G++P++MSAGELE
Sbjct: 166 KNLLMDSTNPGVGENALGLTRVPLILGIWGSKGCGKTFNLELACKALGVHPVVMSAGELE 225
Query: 195 SGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 253
AGEP +LIR+RYR AA+I+K +GK CL IND+DAG G TQ TVN QMV TL
Sbjct: 226 DEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFK-QTQATVNTQMVMGTL 284
Query: 254 MNIADNPTNV------QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
MNI D+P V ++ + E RVPII+TGND STLYAPL+RDGRM+KFYW+PT
Sbjct: 285 MNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPLLRDGRMDKFYWSPT 344
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359
RED + +++ D+VP+ + +LV + Q +DFFGA+R+R+YD+ + +W
Sbjct: 345 REDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYDEAIARW 396
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 182/299 (60%), Gaps = 10/299 (3%)
Query: 127 LDGLYIAPAFMDKVVVHITKNFLN----LPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
LDG ++ F ++V H+ KN L L LILGIWG KG GK+ EL KMG
Sbjct: 83 LDGFHVPERFAERVATHVVKNLLKDKGALGATSPALILGIWGHKGCGKTMNVELACKKMG 142
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQ 241
+ PI+ SAGELE AGEP ++R+RY AA +++ GK+ CL IND+DAG G+
Sbjct: 143 LQPIVTSAGELEDSTAGEPGAMLRRRYLTAARAMRETGKLSCLIINDIDAGIGKFKDDLG 202
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMY---NQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TVNNQ+ + TLMNI DNPT V ++ ++ N RVPIIVTGNDFS LYAPL RDGR
Sbjct: 203 -TVNNQITHGTLMNICDNPTIVSEGLVWRTDSKSTNARVPIIVTGNDFSRLYAPLTRDGR 261
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+ + W PT ++ + + + + D + LV TFP Q +DFFGALRARVYDD V
Sbjct: 262 MDLWMWEPTSQELVEMIHAMMKDDGLTTACCETLVATFPNQPLDFFGALRARVYDDAVSD 321
Query: 359 WISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
++ VG++ + LV E +TL++LL GR +V EQENV +QLA +Y+
Sbjct: 322 FVFNVGLDGLNDSLVGLDERRRLKLGDVTITLERLLACGRNVVGEQENVNNIQLAREYM 380
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 206/382 (53%), Gaps = 58/382 (15%)
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLD--------NTLDGLYIAPAFMDKVV 141
KG++D +F + + + + D S LR+ D N ++ P F+DKV
Sbjct: 122 KGIIDDVFAG--TANAKFNLGADSDIASGRLRYRDVEHVRSFKNLFGDFHVPPLFVDKVS 179
Query: 142 VHITKNFLNLPN------------VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189
+H+ KN + + KVPLILG+WG KG GK+F EL + I P++MS
Sbjct: 180 LHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCGKTFNLELACKALDITPVVMS 239
Query: 190 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 248
AGELE AG P +LIR RYR+AA+II+ GKM CL IND+DAG GR TQ TVN QM
Sbjct: 240 AGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFK-RTQATVNTQM 298
Query: 249 VNATLMNIADNPTNV------QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
V TLMN+ D+PT V ++ +E RVPIIVTGND STLYAPL+RDGRMEKF
Sbjct: 299 VMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPLLRDGRMEKF 358
Query: 303 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-- 360
YW PTR D + ++R D+V +E + +LV GQ +DFFGA RAR+YD + +W
Sbjct: 359 YWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYDRCIVEWAES 418
Query: 361 --SEVGIERIGKRLVN-----------SKEGP-------------PTFEQPKMTLDKLLE 394
SE G+R V ++E P P F + + L+
Sbjct: 419 FRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQDCSEEALMR 478
Query: 395 YGRMLVQEQENVKRVQLADKYL 416
+ L +EQ V +L++ Y+
Sbjct: 479 HADDLAREQRLVNEKRLSEDYM 500
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 178/303 (58%), Gaps = 13/303 (4%)
Query: 128 DGLYIAPAFMDKVVVHITKNFLNLPNVKV---------PLILGIWGGKGQGKSFQCELVF 178
D + ++++ +TKN+L K PL+LGIWGGKG GKSF EL
Sbjct: 76 DDFTVPERLLERIGTFLTKNYLMHYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELAC 135
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMG 237
AK+G+ PI+ SAGELE AGEP KL+R+RY A + ++ G CL IND+DAG GR
Sbjct: 136 AKLGVLPIVTSAGELEDATAGEPGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFK 195
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNV--QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
TT TVNNQ+V TLMNIADNPTNV + N+ PRVP+IVTGNDFS LYAPL R
Sbjct: 196 HTTSSTVNNQIVQGTLMNIADNPTNVYEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLAR 255
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355
DGRM+KF+W P+RE+ +G+ + IF + K D KLV FP Q +DFF A+R R D
Sbjct: 256 DGRMDKFFWEPSREEIVGIMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAF 315
Query: 356 VRKWISEVGIERIGKRL-VNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
V + E + L N + ++ + L R + EQ+NV +QL+ +
Sbjct: 316 VLDFCVENEMAFTSALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSRE 375
Query: 415 YLS 417
YL+
Sbjct: 376 YLA 378
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 29/314 (9%)
Query: 78 DISDDQQDITRGKGMVDTLFQ----APMESGTHYAVMS-SYDYISQGLRHLDNTLDGLYI 132
D + ++ +G+VD +F + G + S Y Q R N + +
Sbjct: 30 DTGNTNTNVGARQGVVDDVFTRNATGEFQLGADSDIASGELRYRYQEARKFKNLVGDYHC 89
Query: 133 APAFMDKVVVHITKNFL---NLPNVK--------------VPLILGIWGGKGQGKSFQCE 175
PAFM+KV H+ KNFL L +V+ PLILG+WGGKG GKSF E
Sbjct: 90 PPAFMEKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKGCGKSFNLE 149
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 234
L MG+ PI+ SAGELE NAG P +LIR+RY+ A +I+++ G M CL IND+DAG G
Sbjct: 150 LACKAMGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAGIG 209
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE----ENPRVPIIVTGNDFSTLY 290
TQ+TVNNQ V TLMN+ D+P V L ++ + RVPIIVTGND ST+Y
Sbjct: 210 WF-KDTQHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLSTVY 268
Query: 291 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTD-NVPKEDIVKLVDTFPGQSIDFFGALRA 349
APL+RDGRM+K+YW P+R+D + +F+ + + + +LV+ FPGQ +DFFGA RA
Sbjct: 269 APLLRDGRMDKWYWNPSRDDICDIVHALFKDEVDWSPDATARLVNAFPGQPLDFFGAARA 328
Query: 350 RVYDDEVRKWISEV 363
+VYDD V +W+ EV
Sbjct: 329 KVYDDAVSRWMCEV 342
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 166/255 (65%), Gaps = 16/255 (6%)
Query: 118 QGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSF 172
Q +R +N + ++ F++KV +H+ KNF+ N PNV PLILG+WGGKG GK+F
Sbjct: 159 QEVRQFNNLVGDYFVPEQFIEKVALHVCKNFMCAAQPNSPNV--PLILGVWGGKGCGKTF 216
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDA 231
EL K+G+ PI+ SAGELE +AG P +LIRQRYR A ++++ GKM CL +ND+DA
Sbjct: 217 NLELACKKLGMMPIVTSAGELEDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVNDIDA 276
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP-----RVPIIVTGNDF 286
G G T Q TVNNQ V TLMN+ D+P V L G +E+ R+PIIVTGND
Sbjct: 277 GLGWFKDTQQ-TVNNQTVCGTLMNLCDHPELVSL-GEERREDGSNLQTVRIPIIVTGNDL 334
Query: 287 STLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK-EDIVKLVDTFPGQSIDFFG 345
S LYAPL+RDGRMEK+YW P +D + + +F+ D + +D LV FP Q +DFFG
Sbjct: 335 SRLYAPLLRDGRMEKWYWDPQFDDIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLDFFG 394
Query: 346 ALRARVYDDEVRKWI 360
A R+ VYDD +R W+
Sbjct: 395 ATRSTVYDDAIRNWM 409
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 185/311 (59%), Gaps = 19/311 (6%)
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
LR L N ++ F DK H+ KN L N++ PLILGIWGGKG GKSF EL
Sbjct: 6 LRSLANVQGDYHVPERFRDKFATHLVKNALASSNLQTPLILGIWGGKGCGKSFNVELCCR 65
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGG 238
MG+ PI+ SAGELE AGEP L+R+RY A+ I+ GK DLDAG GR
Sbjct: 66 DMGVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRH-R 119
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP---RVPIIVTGNDFSTLYAPLIR 295
+ TVNNQ+V ATLMN+ D+PT V + G + ++ RVPI+VTGND S +YAPL R
Sbjct: 120 DDKTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTR 179
Query: 296 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPK-----EDIVKLVDTFPGQSIDFFGALRAR 350
GRM+ + W PTR++ + + + D P ED + VD F Q +DFFGA R+R
Sbjct: 180 SGRMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGIEDARRFVDAFDAQPLDFFGAARSR 239
Query: 351 VYDDEVRKWISEVGIERIGKRLVNS----KEGPPTFEQPKMTLDKLLEYGRMLVQEQENV 406
DD+VR ++ VG+E +G RL++S K + ++L+ L+ GR + +EQ+NV
Sbjct: 240 CVDDDVRAFVDRVGVESLGTRLLSSGDKIKSKSVVVGRGDVSLEALVRAGRAIEREQQNV 299
Query: 407 KRVQLADKYLS 417
V+L+ +YL+
Sbjct: 300 LDVRLSREYLA 310
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 180/308 (58%), Gaps = 26/308 (8%)
Query: 131 YIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP 185
+I F+D+ HI KN L NL +V PLIL +WGGKG GKSF EL ++G+ P
Sbjct: 92 HIPDRFLDRFATHIAKNLLIDGGANLGSV--PLILCVWGGKGCGKSFNLELCCKRLGVFP 149
Query: 186 IMMSAGELESGNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 244
+++SAGELE AGEP ++R+RY A + G C+ +ND+DAG GR + TV
Sbjct: 150 VVVSAGELEDPTAGEPGAMLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRF-KDDKATV 208
Query: 245 NNQMVNATLMNIADNPTNVQLPGMYNQEEN---PRVPIIVTGNDFSTLYAPLIRDGRMEK 301
NNQ+ ATLMN+ D P V + G + ++ PRVPI+VT ND S LYAPL R+GR +
Sbjct: 209 NNQIAQATLMNLCDEPNRVSVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDL 268
Query: 302 FYWAPTREDRIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
+ W PTR + + D P + D ++LV+ FP Q +DFFGA+R+R DD VR
Sbjct: 269 WMWEPTRGEITKMVHDAL--DGAPGYGGESDALELVNAFPSQPLDFFGAVRSRCADDAVR 326
Query: 358 KWISEVGIERIGKRLVNSK---EGPPTFEQPKMT-----LDKLLEYGRMLVQEQENVKRV 409
++I+ VG+E +G L + G P + +T L LLE G + +EQ+NV V
Sbjct: 327 RFIARVGLENLGATLCGHRGREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDV 386
Query: 410 QLADKYLS 417
L+ +Y++
Sbjct: 387 ALSREYVA 394
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/160 (67%), Positives = 123/160 (76%), Gaps = 2/160 (1%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQ-GLRHLDNTLD 128
RW GL D+SDDQQDITRG+ MVD+LFQ GTH AVMSS + Q D D
Sbjct: 93 RWRGLDEDVSDDQQDITRGRHMVDSLFQGQQGLGGTHNAVMSSGPNVHQKNFGDSDVMQD 152
Query: 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
GLYIAP F+DK+ VHI KNFL LP VKVPLILGIWGGKGQGK+FQ EL + K+GINPI+M
Sbjct: 153 GLYIAPDFLDKMTVHIAKNFLELPLVKVPLILGIWGGKGQGKTFQTELGYRKLGINPIVM 212
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
SAGELESGNAGEPAKL+R +EA++ IKKGKMC LFIN+
Sbjct: 213 SAGELESGNAGEPAKLVRAGNKEASEFIKKGKMCFLFINE 252
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 141/200 (70%), Gaps = 5/200 (2%)
Query: 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPI 279
M CL INDLDAG GR G TQ TVNNQ+ TLMN+ADNPT V + + + + RVPI
Sbjct: 1 MSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPI 59
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 339
IVTGNDFSTLYAPLIRDGRMEKFYW P RED I + G++ D + E++ ++VD FP Q
Sbjct: 60 IVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQ 119
Query: 340 SIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQPKMTLDKLLEYG 396
++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PTF PK TL+ L+E G
Sbjct: 120 ALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESG 179
Query: 397 RMLVQEQENVKRVQLADKYL 416
LV+EQE + +L+ +Y+
Sbjct: 180 YSLVKEQELIMSSKLSKEYM 199
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 141/202 (69%), Gaps = 5/202 (2%)
Query: 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRV 277
GKM CL INDLDAG GR G TQ TVNNQ+V TLMN+ADNP V + + + + R+
Sbjct: 1 GKMSCLMINDLDAGLGRFG-NTQMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRI 59
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 337
PII TGNDFSTLYAPLIRDGRMEKFYW PTRED I + ++ D + E++ +VDTFP
Sbjct: 60 PIIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFP 119
Query: 338 GQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLE 394
Q++DF+GALR+R YD + +W++++ G E++G++L+ K E PTF PK TLD L++
Sbjct: 120 NQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQ 179
Query: 395 YGRMLVQEQENVKRVQLADKYL 416
G LV+EQ V L+ +Y+
Sbjct: 180 SGNSLVEEQAFVMNSNLSKEYM 201
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 177/323 (54%), Gaps = 23/323 (7%)
Query: 108 AVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLN-----LPNVKVPLILGI 162
+ +YD+ R +N + Y+APAF++KV +H+ KN+L NV+VPLILGI
Sbjct: 13 GTLRAYDF-----RTFNNIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVRVPLILGI 67
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKM 221
WG KG GK+FQ EL ++G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM
Sbjct: 68 WGEKGMGKTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKM 127
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPII 280
L I+D+DAG G Q TVNNQ+V TLMNI DNP V + + E+ R PII
Sbjct: 128 TALLIHDIDAGLGHF-DHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRIRRTPII 186
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIV-KLVDTFPGQ 339
VTG P R R + T+ S + N P V V F Q
Sbjct: 187 VTGR------GPTRRFSRYLLRVTSVTQPHSTNHLSNCYLPTNTPCCTYVYTYVCRFKRQ 240
Query: 340 SIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLV--NSKEGPPTFEQPKMTLDKLLEYG 396
+DFFGALRA YD+++R+WI ++ G+ V K G P FE ++T+D L+ G
Sbjct: 241 PLDFFGALRASTYDEQIRQWIRRDITGGLWGEVCVGGTDKSGLPRFEPVRLTVDMLVAEG 300
Query: 397 RMLVQEQENVKRVQLADKYLSEA 419
L EQ+ V +L+ YL
Sbjct: 301 ERLENEQQQVLNHKLSADYLRHV 323
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 138/275 (50%), Gaps = 135/275 (49%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIA 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193
VPLILGIWGGK MGINPIMMSAGEL
Sbjct: 47 ----------------------VPLILGIWGGK--------------MGINPIMMSAGEL 70
Query: 194 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 253
ESGNAGEPA KMCCLFINDLDAGAG
Sbjct: 71 ESGNAGEPA-----------------KMCCLFINDLDAGAG------------------- 94
Query: 254 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 313
RVPIIVTGNDFSTLYAPLI RIG
Sbjct: 95 ----------------------RVPIIVTGNDFSTLYAPLI----------------RIG 116
Query: 314 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
VC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 117 VCTGIFR-----------LVDTFPGQSIDFFGALR 140
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 98/108 (90%)
Query: 305 APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG 364
APTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW VG
Sbjct: 1 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVG 60
Query: 365 IERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 412
+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 61 VERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 108
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 96/102 (94%)
Query: 307 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 366
TREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SEVG++
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 367 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 136/233 (58%), Gaps = 52/233 (22%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS--SYDYISQG 119
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A + + G
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPG 112
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
H HI+KN + LPN+ QGKSFQC+LVFA
Sbjct: 113 QHH-------------------GHISKNLMKLPNI-------------QGKSFQCDLVFA 140
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232
KMGIN IMMSAGE PAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMSAGE--------PAKLIRQRYREAADMINKGKMCVLFINDLDAG 185
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 86/131 (65%), Gaps = 34/131 (25%)
Query: 341 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 400
IDFFGALRARVY DEVR+W++E+G+E IG+RL
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
Query: 401 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDP 460
ENVKRV+LADKYLSEAALGDAN D+ G FYGKA QQ VPVP GCTD AANYDP
Sbjct: 301 ---ENVKRVRLADKYLSEAALGDANHDS---GEFYGKAEQQSPVPVPAGCTDQRAANYDP 354
Query: 461 TARSDDGSCNY 471
TARSDDGSC Y
Sbjct: 355 TARSDDGSCVY 365
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+K
Sbjct: 2 TVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDK 61
Query: 302 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
FYW P RED + ++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+
Sbjct: 62 FYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVD 121
Query: 362 EV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
++ G+E G +++ + + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 122 DIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 179
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 90/100 (90%)
Query: 320 RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP 379
RTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GP
Sbjct: 1 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 60
Query: 380 PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419
PTFEQPKMT++KLL YG MLVQEQENVKRVQLA+ YL EA
Sbjct: 61 PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLKEA 100
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 346 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 405
ALRARVYDDEVRKWIS VG+E +GK+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQEN
Sbjct: 1 ALRARVYDDEVRKWISGVGVEGVGKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQEN 60
Query: 406 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
VKRVQLADKYL+EAALGDAN DAI G+F+G
Sbjct: 61 VKRVQLADKYLNEAALGDANADAINRGAFFG 91
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 84/94 (89%)
Query: 343 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 402
FFGAL+ARVYDDEVRKWIS VG++ IGK+LVNSKEGPP F+QPKMTL KLLEYG MLVQE
Sbjct: 18 FFGALKARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPNFDQPKMTLSKLLEYGNMLVQE 77
Query: 403 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
QENV+RVQLAD YL EAALGDAN D+I G+FYG
Sbjct: 78 QENVERVQLADMYLKEAALGDANQDSINRGTFYG 111
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 112/187 (59%), Gaps = 5/187 (2%)
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGT 239
MG+ P+ +SAGELE AGEP + +R+RY AA + G+ CL I+DLDAG G T
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYN--QEENPRVPIIVTGNDFSTLYAPLIRDG 297
TVN Q + +LM + D+P V + + RVPI VT ND + LYAPL+R+G
Sbjct: 61 AN-TVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRALRVPIYVTANDLTCLYAPLVREG 119
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RM+KFY+ P+R + +F + D+ L+D FP Q +DFFG+++AR+ D VR
Sbjct: 120 RMDKFYFEPSRGEMAAALRALF-APQLGAADVKVLLDAFPEQPMDFFGSIKARLVDGAVR 178
Query: 358 KWISEVG 364
+W+ + G
Sbjct: 179 RWLHQAG 185
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 139 bits (349), Expect = 4e-30, Method: Composition-based stats.
Identities = 66/68 (97%), Positives = 66/68 (97%)
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC LFIN
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFIN 60
Query: 228 DLDAGAGR 235
DLDAGAGR
Sbjct: 61 DLDAGAGR 68
>gi|22255887|gb|AAM94806.1| rubisco activase alpha [Gossypium hirsutum]
Length = 76
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%)
Query: 398 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAAN 457
MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FYGKAAQQV VPVPEGCTDP A N
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYGKAAQQVGVPVPEGCTDPNADN 60
Query: 458 YDPTARSDDGSCNYQF 473
+DPTARSDDG+C Y+F
Sbjct: 61 FDPTARSDDGTCTYKF 76
>gi|301323237|gb|ADK70390.1| rubisco activase [Musa AB Group]
Length = 68
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 60/67 (89%)
Query: 405 NVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARS 464
NVKRVQLADKYLSEAALGDAN DAIK G FYGKAAQQV +PVPEGCTDP A N+DPTARS
Sbjct: 2 NVKRVQLADKYLSEAALGDANQDAIKTGQFYGKAAQQVNIPVPEGCTDPIATNFDPTARS 61
Query: 465 DDGSCNY 471
DDGSC Y
Sbjct: 62 DDGSCLY 68
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 254 MNIADNPTNVQLPGMYNQEE----NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
MN+ D+P V + + RVPIIVT ND ST+YAPL+RDGRM+K+YW+PTR+
Sbjct: 1 MNLCDHPELVSVGEDRGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTRD 60
Query: 310 DRIGVCSGIFR-TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 367
D + +F+ + E +LVD FPGQ +DFFGA RA+VYDD + W+ ER
Sbjct: 61 DICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWMCVDARER 119
>gi|18476502|gb|AAL50316.1| ultraviolet-B-repressible rubisco activase [Pisum sativum]
Length = 50
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 434
PKMTL+KLLEYG MLVQEQENVKRVQLADKYLSEAALGDAN+DAIK G+F
Sbjct: 1 PKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>gi|62176924|emb|CAG25592.1| putative rubisco activase [Triticum durum]
Length = 50
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 46/50 (92%)
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 436
MT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 50
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 78.2 bits (191), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 42/61 (68%), Gaps = 17/61 (27%)
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
+MGINPIMMSAGELESGNAGEPA KMCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVC 57
Query: 240 T 240
T
Sbjct: 58 T 58
>gi|22255885|gb|AAM94805.1| rubisco activase beta [Gossypium hirsutum]
Length = 37
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 35/37 (94%)
Query: 398 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 434
MLV EQENVKRVQLADKYLSEAALG+ANDDAIK G+F
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 37
>gi|86611442|gb|ABD14394.1| chloroplast RuBisCO small isoform precursor [Oryza sativa Japonica
Group]
Length = 31
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 444 VPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+PVPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 2 LPVPEGCTDPVAKNFDPTARSDDGSCLYTF 31
>gi|428221330|ref|YP_007105500.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994670|gb|AFY73365.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 515
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 209
LP+ K L++GI +G GKS C A + P++ + G+L G+ RQ
Sbjct: 265 LPHPKGVLLMGI---QGTGKSL-CAKAIAHLWNLPLLRLDVGKLFGSLLGQSESRTRQTI 320
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
++A I C L+I+++D G + G + + +Q V ATL+ +
Sbjct: 321 QQAEAI----SPCILWIDEIDKAFGGISGISMDSGTSQRVFATLLT-------------W 363
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNV 324
QE+ V I+ T N+ L L+R GR ++ ++ P E+R + V FR D+V
Sbjct: 364 MQEKTSSVFIVATANNIHVLPPELLRKGRFDEIFFINLPNYEERKQILKVHLQRFRPDSV 423
Query: 325 P--KEDIVKLVDTFPGQSID 342
+ I ++ + F G I+
Sbjct: 424 AFDLDAIAQITEDFSGAEIE 443
>gi|337283526|ref|YP_004623000.1| cell division control protein [Pyrococcus yayanosii CH1]
gi|334899460|gb|AEH23728.1| cell division control protein [Pyrococcus yayanosii CH1]
Length = 836
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 35/261 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A G V ++++N L M EEN V +I
Sbjct: 640 AIIFIDEIDAIAPARGAVEGERVTDRLINQLLTE------------MDGIEENSGVVVIA 687
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR--TDNVP------KEDIVKLV 333
N L L+R GR ++ P ++R + IFR T N+P E++ K
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDERARLE--IFRVHTRNMPLAKDVNLEELAKKT 745
Query: 334 DTFPGQSIDFF---GALRA--RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMT 388
+ + G I AL A RV ++ + E E +GK +V K+ ++ K +
Sbjct: 746 EGYTGADIAALVREAALNAMRRVLLTLPKRLVEEENEEFLGKLVVTRKDFEEALKRVKPS 805
Query: 389 LDK-LLEYGRMLVQEQENVKR 408
+ K ++EY R Q +E+ KR
Sbjct: 806 VTKYMMEYYR---QFEESRKR 823
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MSS + + G LD+ D + A + V+ + +F L V P + ++G G
Sbjct: 525 MSSSETLHTGGIGLDDVGDMTEVKQALTEAVLWPLQYPDSFARL-GVDAPRGVLLYGPPG 583
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + + EL GE + +R+ +R+A+D +F++
Sbjct: 584 CGKTFLLRALAGTGQLNVLSVKGAELLDKYVGESERAVRELFRKASD----AAPALVFLD 639
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R GG+T V +++V A L +L G E ++V +
Sbjct: 640 EVDALAPRRGGSTDSGVADRVVAALL---------TELDGAQPLREV----VVVGATNRP 686
Query: 288 TLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 344
L P L+R GR+E+ + P E R + R N P D V L + G +D +
Sbjct: 687 ELIDPALLRPGRLERLVYVPPPDAEARAAILRAAGR--NTPLADDVDLDEL--GAELDGY 742
Query: 345 GA 346
A
Sbjct: 743 SA 744
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
VK P L + G G GK+ V A+ G + +S+G++ AGE K +R+ + A
Sbjct: 237 GVKFPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKVFERA 296
Query: 213 ADIIKKGKMCCLFINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
++KKG C + I++LDA R G + V Q++ TLM+ A + V
Sbjct: 297 RKLVKKGSPCVIVIDELDAMCPTRRDGNAHEARVVAQLL--TLMDGAGESSEVH------ 348
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
VP++ T + + + L R GR ++
Sbjct: 349 ------VPVVATTSRPNAIDPALRRPGRFDR 373
>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
malayi]
Length = 467
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 146 LSEQIRELREVVELPLVNPDLFRRVGITPPKGCL------------LYGPPGTGKTLLAR 193
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 194 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 249
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + RV II+ N TL L+R
Sbjct: 250 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIMATNRPDTLDPALLR 299
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ V S I + ++ E +VKL D F G +
Sbjct: 300 PGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAG 359
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 360 LFAIRAEREYVIDEDFMKAVRKVG 383
>gi|256810701|ref|YP_003128070.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
AG86]
Length = 903
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 327
V +I N + L+R GR+++ P +++ + G+ ++V E
Sbjct: 587 PKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRGMNLAEDVDLE 646
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEG 378
++ K + + G I+ A + VRK I + GIE + L+N +G
Sbjct: 647 ELAKKTEGYTGADIEALCREAAMLA---VRKSIGKPWGIETALRDLINYLQG 695
>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
gi|307767590|gb|EFO26824.1| 26S protease regulatory subunit 10B [Loa loa]
Length = 397
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 146 LSEQIRELREVVELPLVNPDLFRRVGITPPKGCL------------LYGPPGTGKTLLAR 193
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 194 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 249
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + RV II+ N TL L+R
Sbjct: 250 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIMATNRPDTLDPALLR 299
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ V S I + ++ E +VKL D F G +
Sbjct: 300 PGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAG 359
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 360 LFAIRAEREYVIDEDFMKAVRKVG 383
>gi|402590003|gb|EJW83934.1| hypothetical protein WUBG_05154 [Wuchereria bancrofti]
Length = 397
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 146 LSEQIRELREVVELPLVNPDLFRRVGITPPKGCL------------LYGPPGTGKTLLAR 193
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 194 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 249
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + RV II+ N TL L+R
Sbjct: 250 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIMATNRPDTLDPALLR 299
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ V S I + ++ E +VKL D F G +
Sbjct: 300 PGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDGFSGADLRNVCTEAG 359
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 360 LFAIRAEREYVIDEDFMKAVRKVG 383
>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica CLIB122]
Length = 410
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 185 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYA- 243
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T +++ + TLM + + G
Sbjct: 244 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDYLG------ 292
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 293 --KTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHAAGVQKQGEIDYE 350
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D F G I
Sbjct: 351 ALVKMSDGFNGADI 364
>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQGTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHVELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|356517889|ref|XP_003527618.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
[Glycine max]
Length = 387
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K+P + ++G G GK+ + + + + + + + + GE A+LIR+ ++ A
Sbjct: 167 MKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYA- 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ + C +F++++DA AGR + + ++ + TL + + QL G+ + E
Sbjct: 226 ---RNHQPCIIFMDEIDAIAGRRSSNRKGS--DREIQRTLKELLN-----QLDGLNHLE- 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 327
+V II+ N L L+R GR+++ P R+ R+ + G+ + + E
Sbjct: 275 --KVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYE 332
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 333 AVVKLAEGFNGADL 346
>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
mulatta]
Length = 409
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 192 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 247
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 248 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 297
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 298 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 357
Query: 336 FPGQSI 341
F G +
Sbjct: 358 FNGADL 363
>gi|164663143|ref|XP_001732693.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
gi|159106596|gb|EDP45479.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
Length = 382
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 110/258 (42%), Gaps = 42/258 (16%)
Query: 100 PMESGTHYAVMSSYDY----------ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFL 149
P E H MS+ D +S+ +R L ++ + P ++V + K L
Sbjct: 105 PREVDPHVYKMSTEDPSGASFAGIGGLSEQIRELREVIELPLLNPELFERVGIKSPKGVL 164
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
++G G GK+ V A + N + + A + GE A+L+R+ +
Sbjct: 165 ------------LYGPPGTGKTLLARAVAATLDTNFLKVVASAIVDKYIGESARLVREMF 212
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A K + C +F++++DA GR ++ T ++ + TLM + + Q+ G
Sbjct: 213 AYA----KTKEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF- 260
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDN 323
++ + +I+ N TL L+R GR+++ P + R+ + I + D
Sbjct: 261 --DQLGKTKVIMATNRPDTLDPALLRPGRIDRKIEIPLPNEQSRLEILKIHTRPIAKRDE 318
Query: 324 VPKEDIVKLVDTFPGQSI 341
+ E IVKL D F G +
Sbjct: 319 LDYEAIVKLSDGFNGADL 336
>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
gi|41688749|sp|O28972.1|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus DSM 4304]
Length = 733
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFR----TDNVPK 326
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 327 EDIVKLVDTFPGQSID 342
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+ + +R L ++ + P ++V ++ K L ++G G GK+
Sbjct: 154 LGEQVRELREVIELPLMNPELFERVGINPPKGVL------------LYGPPGTGKTLLAR 201
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V A + N + + + + GE A+LIR+ + A ++ + C +F++++DA GR
Sbjct: 202 AVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEPCVIFMDEIDAIGGR 257
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+Q T ++ + TLM + + Q+ G E R II+ N TL L+R
Sbjct: 258 R--FSQGTSADREIQRTLMELLN-----QMDGF---ESLGRTKIIMATNRPDTLDPALLR 307
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + ++ ++ E IVKL D F G +
Sbjct: 308 PGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|355745594|gb|EHH50219.1| hypothetical protein EGM_01010, partial [Macaca fascicularis]
Length = 392
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 281 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
Length = 449
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ I P +V + K L ++G G GK+
Sbjct: 198 LSEQIRELREVVELPLINPDLFRRVGITPPKGCL------------LYGPPGTGKTLLAR 245
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 246 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 301
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V II+ N TL L+R
Sbjct: 302 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGKVKIIMATNRPDTLDPALLR 351
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ V S I + + E IVKL D F G +
Sbjct: 352 PGRLDRKIEIPLPNEQSRLEVLKIHASKITKHGEIDYEAIVKLSDGFSGADLRNVCTEAG 411
Query: 343 --FFGALRARVYDDEVRKWISEVG 364
A R V D++ K + +VG
Sbjct: 412 LYAIRAEREYVIDEDFMKAVRKVG 435
>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
Length = 734
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
++K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 486 DIKPPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 545
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ C LF +++D+ A R GG V ++V+ L +L GM E
Sbjct: 546 RQVAP----CVLFFDEIDSLAPRRGGGADSHVTERVVSQLL---------TELDGM---E 589
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
E V +I N + L+R GR+E+ + P
Sbjct: 590 ELKDVVVIAATNRPDIVDPALLRPGRIERHIYIP 623
>gi|414078652|ref|YP_006997970.1| AAA ATPase [Anabaena sp. 90]
gi|413972068|gb|AFW96157.1| AAA ATPase [Anabaena sp. 90]
Length = 532
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ K L+ GI +G GKS + + A+ + + + G L G GE IRQ +
Sbjct: 277 LPSPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRIRQVIK 333
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+++ C LFI++ D G + GT + ++ V +L+ +
Sbjct: 334 ----LVEAIAPCVLFIDEADKAFGNVNTGTDGDSGTSRRVFGSLIT-------------W 376
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 314
QE+ V I++T N+ L A L+R GR+++ +W P +++R+ +
Sbjct: 377 MQEKVSPVFIVLTANNVEILPAELLRKGRLDEIFWLNLPNQKERLQI 423
>gi|432945585|ref|XP_004083671.1| PREDICTED: 26S protease regulatory subunit 10B-like [Oryzias
latipes]
Length = 377
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 160 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 215
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 216 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 265
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 266 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 325
Query: 336 FPGQSI 341
F G +
Sbjct: 326 FNGADL 331
>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
salar]
Length = 387
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 225
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 275
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 335
Query: 336 FPGQSI 341
F G +
Sbjct: 336 FNGADL 341
>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHASPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|410928215|ref|XP_003977496.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Takifugu rubripes]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVTSQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ V TLM + + Q+ G E RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGF---ETLHRVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARMDILKIHSGPITKHGEMDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ V TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|344230035|gb|EGV61920.1| hypothetical protein CANTEDRAFT_107330 [Candida tenuis ATCC 10573]
Length = 835
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ ++ A
Sbjct: 564 ITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFQRA- 622
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 623 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 664
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + +IR GR++K + PT E+R+ + + +++ P ++
Sbjct: 665 NDRKGIFVIGATNRPDMIDPAMIRPGRLDKSLYIELPTEEERLDILKTLIKSNGTPIDES 724
Query: 330 VKLVDTFPGQSI-DFFGA 346
V L D Q +F GA
Sbjct: 725 VNLKDIVYNQKCRNFSGA 742
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + +A
Sbjct: 225 VEPPRGVLLYGPPGCGKTTVANALAGELQVPFISISAPSVVSGMSGESEKKLREIFEDAK 284
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+I C +FI+++D+ + G Q + ++V A L+ + D T + G
Sbjct: 285 NIAP----CLVFIDEIDSITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTNGK----- 334
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT 321
P+IV G N +L L R GR ++ P+ E RI + + T
Sbjct: 335 ----PVIVIGATNRPDSLDPALRRAGRFDREICLNVPSEEQRISILKAMTST 382
>gi|261403322|ref|YP_003247546.1| ATPase AAA [Methanocaldococcus vulcanius M7]
gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
M7]
Length = 903
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 327
V +I N + + L+R GR+++ P ++ R+ + R+ N+ + E
Sbjct: 587 PKDVIVIAATNRPDIIDSALLRPGRLDRVILVPVPDEKARLDILKIHTRSMNLDEDVNLE 646
Query: 328 DIVKLVDTFPGQSID 342
++ K + + G I+
Sbjct: 647 ELAKKTEGYTGADIE 661
>gi|257057411|ref|YP_003135243.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
gi|256587283|gb|ACU98416.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
Length = 747
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + A + V+ + +F L V P + I+G G
Sbjct: 473 MSTTDTLATGGITLDDVGDMADVKQALTESVLWPLRYPDSFERL-GVAPPRGVLIYGPPG 531
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R+AA+ +F++
Sbjct: 532 NGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAPSLVFLD 587
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V++++V A L + + E R ++V +
Sbjct: 588 EVDALAPRRGQSSDSGVSDRVVAALLTEL-------------DGVEPLRDVVVVGATNRP 634
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 635 ELVDPALLRPGRLERLIYVP 654
>gi|348537164|ref|XP_003456065.1| PREDICTED: 26S protease regulatory subunit 10B [Oreochromis
niloticus]
Length = 389
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Komagataella pastoris CBS
7435]
Length = 454
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 229 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 287
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 288 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 336
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 337 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 394
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D F G I
Sbjct: 395 AVVKMSDGFNGADI 408
>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
Length = 389
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
Length = 689
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 424 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 479
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 480 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLEN---VVIIA 527
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 340
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 528 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 585
Query: 341 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK 376
+ GA A + + + I E E + K N K
Sbjct: 586 EGYTGADLAALVREATLRAIREEMTECMKKADENCK 621
>gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
Length = 416
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 249
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 298
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 356
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D F G I
Sbjct: 357 AVVKMSDGFNGADI 370
>gi|221486668|gb|EEE24929.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii GT1]
gi|221508425|gb|EEE34012.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii VEG]
Length = 398
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 328 DIVKLVDTFPGQSI 341
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
Length = 903
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 274 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGVCSGIFR--------TDNV 324
P+ I++ + + P L+R GR+++ P +++ + IF+ ++V
Sbjct: 586 EPKDVIVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARL--DIFKIHTRAMNLAEDV 643
Query: 325 PKEDIVKLVDTFPGQSID 342
E++ K + + G I+
Sbjct: 644 SLEELAKKTEGYTGADIE 661
>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
Length = 389
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|237834291|ref|XP_002366443.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
gi|211964107|gb|EEA99302.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
Length = 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 328 DIVKLVDTFPGQSI 341
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|342306104|dbj|BAK54193.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 773
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 19/202 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 563
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 564 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLE---NVVIIA 611
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 340
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 612 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 669
Query: 341 IDFFGALRARVYDDEVRKWISE 362
+ GA A + + + I E
Sbjct: 670 EGYTGADLAALVREATLRAIRE 691
>gi|401409344|ref|XP_003884120.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
gi|325118538|emb|CBZ54089.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
Length = 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 328 DIVKLVDTFPGQSI 341
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 164 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 223
G G GKS + + ++ G+ + + G+ R REA ++ C
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQS----EGRLREALATAERVAPCV 328
Query: 224 LFINDLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
L+I++++ G G GGTT+ + + + QE +V ++
Sbjct: 329 LWIDEIEKGLAQGSDGGTTRRLIGQFL-------------------FWMQELTAKVFMVA 369
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVPKE---DIVKLV 333
T ND STL L+R GR ++ ++ AP RE+ IG+ + +E D+V L
Sbjct: 370 TANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLYFRKYLGAEPSQELLTDLVTLT 429
Query: 334 DTFPGQSID-FFGALRARVYDDEV 356
D F G ID + +VY D +
Sbjct: 430 DGFSGSDIDAVIHDIATKVYVDRM 453
>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 702
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N+ P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 456 NIASPAGVLLYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA 515
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K C +F ++LDA + GG + V ++VN+ L +L G E
Sbjct: 516 ----KASAPCIIFFDELDALVPKRGGDSTNQVTERVVNSLL---------AELDGF---E 559
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320
+V +I N + ++R GR++K + PT ++++ + + R
Sbjct: 560 GRKQVYVIAATNRPDIIDPAILRGGRLDKLLYVPLPTNDEKVSILEALIR 609
>gi|307196021|gb|EFN77746.1| Peroxisome biogenesis factor 1 [Harpegnathos saltator]
Length = 929
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F N P +K+ + ++G G GK+ + + + G+N I + EL S G + +R
Sbjct: 666 FRNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 724
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A ++ K C LF ++ D+ A R G V +++VN L QL G
Sbjct: 725 VFERA----RRAKPCVLFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDG 770
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 325
+ ++E V I+ + L L+R GR++K P +R + + + ++ NV
Sbjct: 771 VEDREG---VAIVAASSRPDMLDPALLRPGRLDKCLHCPLPNETERREIFTELCKSQNVD 827
Query: 326 K-----EDIVKLVDTFPGQSID 342
E++ +L D F G I+
Sbjct: 828 SATLDLEELARLSDGFTGADIN 849
>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
2661]
gi|2492505|sp|Q58556.1|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
[Methanocaldococcus jannaschii DSM 2661]
Length = 903
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 274 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 311
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>gi|405122542|gb|AFR97308.1| ATPase [Cryptococcus neoformans var. grubii H99]
Length = 405
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+ + +R L ++ + P ++V ++ K L ++G G GK+
Sbjct: 154 LGEQVRELREVIELPLMNPELFERVGINPPKGVL------------LYGPPGTGKTLLAR 201
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V A + N + + + + GE A+LIR+ + A ++ + C +F++++DA GR
Sbjct: 202 AVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEPCVIFMDEIDAIGGR 257
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+Q T ++ + TLM + + Q+ G + R II+ N TL L+R
Sbjct: 258 R--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIMATNRPDTLDPALLR 307
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + ++ ++ E IVKL D F G +
Sbjct: 308 PGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|401886263|gb|EJT50312.1| ATPase [Trichosporon asahii var. asahii CBS 2479]
Length = 403
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 178 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 236
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 237 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 283
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 284 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 343
Query: 328 DIVKLVDTFPGQSI 341
+VKL D F G +
Sbjct: 344 AVVKLSDGFNGADL 357
>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
Length = 405
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+ + +R L ++ + P ++V ++ K L ++G G GK+
Sbjct: 154 LGEQVRELREVIELPLMNPELFERVGINPPKGVL------------LYGPPGTGKTLLAR 201
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V A + N + + + + GE A+LIR+ + A ++ + C +F++++DA GR
Sbjct: 202 AVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEPCVIFMDEIDAIGGR 257
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
+Q T ++ + TLM + + Q+ G + R II+ N TL L+R
Sbjct: 258 R--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIMATNRPDTLDPALLR 307
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + ++ ++ E IVKL D F G +
Sbjct: 308 PGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDGFNGADL 359
>gi|406700181|gb|EKD03362.1| ATPase [Trichosporon asahii var. asahii CBS 8904]
Length = 399
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 174 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 232
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 233 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 279
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 280 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 339
Query: 328 DIVKLVDTFPGQSI 341
+VKL D F G +
Sbjct: 340 AVVKLSDGFNGADL 353
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
V+ P + ++G G GK+F + +N + EL GE + +R+ +R A
Sbjct: 188 GVEAPRGVLLYGPPGGGKTFLLRALAGSGDLNVFAVKGAELLDKYVGESERAVRELFRRA 247
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
A + +F++++DA A R GG+T V +++V A L + D T +
Sbjct: 248 A----EAAPALIFLDEVDALAPRRGGSTDAGVADRVVAALLTEL-DGATPL--------- 293
Query: 273 ENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP 306
R ++V + L P L+R GR+E+ + P
Sbjct: 294 ---REVVVVGATNRPELIDPALLRPGRLERLVFVP 325
>gi|296108730|ref|YP_003615679.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
Length = 903
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 145 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 204
K+ + V+ P + ++G G GK+ + V + G N I + E+ S GE K
Sbjct: 474 AKDVFDKIGVRPPKGVLLFGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKA 533
Query: 205 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 264
IR+ +++A ++ C +F +++DA A + G V +++VN L +
Sbjct: 534 IREIFKKA----RQNAPCIIFFDEIDAIAPKRGRDISSGVTDKVVNQIL---------TE 580
Query: 265 LPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGV------CSG 317
L G+ E P+ +++ + + P L+R GR+++ P +++ + G
Sbjct: 581 LDGL----EEPKDVVVIAATNRPDIIDPALLRPGRLDRIILVPVPDEKARLDIFKIHTRG 636
Query: 318 IFRTDNVPKEDIVKLVDTFPGQSID 342
+ ++V E++ K + + G I+
Sbjct: 637 MSLAEDVDLEELAKKTEGYTGADIE 661
>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
putative; ribosome export protein, putative [Candida
dubliniensis CD36]
gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
Length = 830
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 556 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 614
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 615 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 656
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 329
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P +
Sbjct: 657 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSPLNEN 716
Query: 330 VKL 332
V L
Sbjct: 717 VDL 719
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 227 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 286
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 287 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 336
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKED 328
P++V G N +L + L R GR ++ P E RI + + T N+ E+
Sbjct: 337 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAM--TKNIKLEN 389
>gi|384248894|gb|EIE22377.1| 26S proteasome regulatory subunit [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L +++ + P +V +K P + ++G G GK+
Sbjct: 140 LSEQIRELRESIELPLMNPELFQRV------------GIKPPKGVLLYGPPGTGKTLLAR 187
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
+ + + N + + + + GE A+LIR+ + A K+ + C +F++++DA GR
Sbjct: 188 AIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYA----KEHQPCIIFMDEIDAIGGR 243
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + G +V +I+ N L L+R
Sbjct: 244 R--FSEGTSADREIQRTLMELLSQLDGFDVIG--------KVKMIMATNRPDVLDPALLR 293
Query: 296 DGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R + + + SGI + ++ E IVKL + F G +
Sbjct: 294 PGRLDRKIEIPLPNEQARSEILKIHASGITKHGDIDYEAIVKLAENFNGADL 345
>gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b
[Tribolium castaneum]
gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum]
Length = 392
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + + E IVKL DT
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDT 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|406605633|emb|CCH42949.1| 26S protease subunit [Wickerhamomyces ciferrii]
Length = 418
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 193 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 251
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 252 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 300
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
+ +I+ N TL L+R GR+++ P + + T+ + K E
Sbjct: 301 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHTEKISKQGEFDFE 358
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D F G I
Sbjct: 359 AVVKMSDGFNGADI 372
>gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
Length = 398
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + RI V +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRIEVLKIHSAGILKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 335 AIVKLAEGFNGADL 348
>gi|49258183|gb|AAH73644.1| Psmc6 protein, partial [Xenopus laevis]
Length = 392
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|452846664|gb|EME48596.1| hypothetical protein DOTSEDRAFT_49041 [Dothistroma septosporum
NZE10]
Length = 710
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 137 MDKVVVHITKNFLNLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
M++++V + + +PL G+ G G GK+ A++G+ + + +
Sbjct: 156 MNRLIVMPIGCYEDYHAASLPLPKGVLLHGPPGCGKTMLARAYAAELGVPFVEILGPSIV 215
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 254
SG +GE K +R R+ EA KK C LFI+++DA A + T+Q + ++V L+
Sbjct: 216 SGMSGESEKGVRDRFEEA----KKNAPCLLFIDEIDAIAPKR-ETSQSQMEKRIVAQLLV 270
Query: 255 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRI 312
++ + N+E P V ++ N +L L R GR E P + R
Sbjct: 271 SMDE----------INKEGGPPVIVLAATNRPDSLDPALRRGGRFGTEININVPNEQVRQ 320
Query: 313 GVCSGIFRTDNVPKE-DIVKLV-DT--FPGQSIDFF----GALRARVYDDEVRKWISEVG 364
+ R+ + + D+VKL DT F G + GA + Y++ + +E+G
Sbjct: 321 SILETQTRSMTLAADVDLVKLAKDTAGFVGADLHDLVGKAGAHQMERYEEALEHQATEMG 380
Query: 365 IE 366
+E
Sbjct: 381 LE 382
>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
Length = 396
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDT 344
Query: 336 FPGQSI 341
F G +
Sbjct: 345 FNGADL 350
>gi|15897351|ref|NP_341956.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
Length = 769
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 507 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 565
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++D+ A G T V ++VN L ++ G+ Q
Sbjct: 566 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGI--QSL 611
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 327
N RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 612 N-RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 670
Query: 328 DIVKLVDTFPGQSIDFFG------ALRARVYD 353
++ K ++ + G I+ LR + YD
Sbjct: 671 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 702
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V + G+ + + G L GE K +R R + AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRFGVPLLRIDFGALYDKYIGETEKNLR-RALDTADLMA 323
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C L+I++++ G G+ V +++ L+ +A+ T RV
Sbjct: 324 P---CVLWIDEIEKGIA--SGSEDEGVGRRILGTLLIWMAERAT--------------RV 364
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 311
++ T ND S L LIR GR+++ ++ PT E R
Sbjct: 365 FLVATANDISRLPPELIRKGRIDELFFVDLPTAEVR 400
>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
laevis]
gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
Length = 389
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 387
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V ++ K L ++G G GK+
Sbjct: 136 LSEQIRELREVIELPLLNPELFQRVGINPPKGVL------------LYGPPGTGKTLLAR 183
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 184 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQPCIIFMDEIDAIGGR 239
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + G +V II+ N TL L+R
Sbjct: 240 R--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIMATNRPDTLDPALLR 289
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + S I + + E +VKL + F G +
Sbjct: 290 PGRLDRKIQIALPNEQARLEILKIHASPITKHGEIDYEAVVKLAEEFNGADL 341
>gi|298674960|ref|YP_003726710.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + ++G G GK+ + V + N I + EL S GE + IR+ +R+A
Sbjct: 480 NTTPPRGVILYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKA 539
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ +FI+++D+ A R G + V ++V+ L M E
Sbjct: 540 ----KQAAPTVIFIDEIDSIAPRRGKSNDSNVTERVVSQILTE------------MDGIE 583
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPK 326
E V +I N + L+R GR ++ + P +E R + G DNV
Sbjct: 584 ELKDVVVIAATNRLDIVDPALLRPGRFDRMVYVSIPEKESRKMIFNIHLEGKPLADNVDI 643
Query: 327 EDIVKLVDTFPGQSID 342
E + + + + G I+
Sbjct: 644 EKLANITEGYSGADIE 659
>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384433872|ref|YP_005643230.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
Length = 759
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 327
RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 660
Query: 328 DIVKLVDTFPGQSIDFFG------ALRARVYD 353
++ K ++ + G I+ LR + YD
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 692
>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
Length = 827
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 325
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSP 709
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 283
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKED 328
P++V G N +L + L R GR ++ P E RI + + T N+ E+
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAM--TKNIKLEN 386
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +WG G GKS + + M IN I + ++ S GE ++IR+ ++ A +
Sbjct: 519 LLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA----RLS 574
Query: 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
C +F +++D+ A G + + + L + + +Q+ ++ +
Sbjct: 575 SPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDGIQVKS--------QIFL 626
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI 318
I N ++ + L+R GR+E PT EDRI + + I
Sbjct: 627 IGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|195160265|ref|XP_002020996.1| GL25072 [Drosophila persimilis]
gi|198464587|ref|XP_001353280.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
gi|194118109|gb|EDW40152.1| GL25072 [Drosophila persimilis]
gi|198149786|gb|EAL30783.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
Length = 389
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLMARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ + ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + +G + + + E IVKL DT
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLSKQGVIDYEAIVKLSDT 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|28278099|gb|AAH45087.1| Psmc6 protein, partial [Xenopus laevis]
Length = 403
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium
dendrobatidis JAM81]
Length = 1081
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 33/224 (14%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L ++G G GK+ V + G+N I + EL + G K +R ++ A +
Sbjct: 772 LLLFGYPGCGKTMLASAVSKECGLNFISVKGPELLNKYIGASEKAVRDLFQRA----QSA 827
Query: 220 KMCCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
+ CCLF ++ D+ A R G G T VN + T M+ A+ L G++
Sbjct: 828 RPCCLFFDEFDSIAPRRGHDNTGVTDRVVNQML---TQMDGAEG-----LEGVFVLAATS 879
Query: 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-DIVKL 332
R +I L+R GR++K P+R DR + I +T V I KL
Sbjct: 880 RPDLIDPA---------LLRPGRLDKTILCDLPSRLDREDIIQTISKTLAVSSSVSISKL 930
Query: 333 VDTFPGQSIDFFGA-LRARVYDDEVRKWISEVGIERIGKRLVNS 375
D Q+ F GA ++ +Y + +G E +G++L N+
Sbjct: 931 AD----QTNGFSGADIQGMMYSAHLMAIRESMGDELVGQKLENA 970
>gi|449664501|ref|XP_002169843.2| PREDICTED: nuclear valosin-containing protein-like [Hydra
magnipapillata]
Length = 400
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
VH F +L V P IL + G G GK+ + + + GIN I + EL + GE
Sbjct: 101 VHNPVEFESLGLVTPPGIL-LAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGES 159
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
K +RQ ++ A K C +F +++DA R T + ++++VN L
Sbjct: 160 EKAVRQVFQRA----KNSAPCVIFFDEIDALCPRRSETGDSSASSRVVNQLL-------- 207
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 319
++ G+ E V I+ N L A ++R GR++K + P DR + + I
Sbjct: 208 -TEMDGL---ETRKNVFIMGATNRPDILDAAILRPGRLDKLLYVGLPNPSDRKKILNTIT 263
Query: 320 RTDNVPK 326
PK
Sbjct: 264 MNGTKPK 270
>gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|400597658|gb|EJP65388.1| ATPase protein [Beauveria bassiana ARSEF 2860]
Length = 733
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + + I+++ EL + GE + +R+ + A +
Sbjct: 498 LWGPPGCGKTLVAQAVANEAQASFILINGPELLNKYVGESERAVRELFSRA----RSSTP 553
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LF ++ D+ A R G ++VNA L +L G ++ V +I
Sbjct: 554 CILFFDEFDSIAPRRDGGGASEAGTRVVNALL---------TELDGARGRDG---VYVIG 601
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED 328
T N + ++R GR+ K F PT +R+ + I+RT +V D
Sbjct: 602 TTNRPDMIDDAMLRPGRLSKQLFLDLPTAAERVDILLAIYRTRHVGATD 650
>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
Length = 389
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 138 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 185
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 186 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 241
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 242 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 291
Query: 296 DGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R + + + +G I + ++ E +VKL D+F G +
Sbjct: 292 PGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDSFNGADL 343
>gi|146416949|ref|XP_001484444.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 125 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
NT+ GL + +V+ KN +K+P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKLPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
N I A + GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 303 YWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
Length = 883
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 22/183 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + G N I + EL + GE + +RQ + AA
Sbjct: 591 LYGPPGCGKTLLAKAISNDSGANFISIKGPELLNKYVGESERAVRQVFSRAA----ASSP 646
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++DA + + + ++VN L M E V +I
Sbjct: 647 CVIFFDEMDALCPKRDNESSSQSSERVVNQLLT------------AMDGLESRGMVFVIA 694
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDT 335
N + + ++R GR++K + P ++RI V I R +V E+I KL +
Sbjct: 695 ATNRPDMIDSAMLRPGRLDKLLYVKLPNEQERISVLKTIARKTPLASDVNLEEIAKLCEN 754
Query: 336 FPG 338
F G
Sbjct: 755 FSG 757
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE + IR+ +++A ++
Sbjct: 498 LFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKKA----RQYAP 553
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA A G V ++V+ L I D T++Q V +I
Sbjct: 554 VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEI-DGITDLQ-----------NVVVIA 601
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N + LIR GR+EK + P +++ V T NVP D V L++
Sbjct: 602 ATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIE 654
>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 942
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
V K F L + P + I G G GK+ + V + GIN I + EL + GE
Sbjct: 684 VKYRKQFEQL-GLTAPAGILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGES 742
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
+ +R+ ++ A + C +F ++LD+ R T + ++VN L
Sbjct: 743 ERAVRRCFQRA----RSSAPCVIFFDELDSLCPRRSDTPESGATMRVVNQLL-------- 790
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 319
++ G+ +++E V I+ N + ++R GR++K + P EDR+ + +
Sbjct: 791 -TEMDGIEDRKE---VYIMAATNRPDIIDPAVLRPGRLDKILYVGLPQEEDRVDILRAVT 846
Query: 320 RTDNVPKED 328
+ PK D
Sbjct: 847 KNGTRPKLD 855
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 139 KVVVHITKNFLNLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSA 190
KV+ + K L++P+ ++ +GI G G GK+ + ++ + I +SA
Sbjct: 231 KVLEEVCKLILHIPHPEIFREIGISPPRGFLLHGPPGCGKTLLATAIAGELDVELIQISA 290
Query: 191 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
EL G +GE + IR+ + A + C LFI+++DA
Sbjct: 291 PELIGGVSGESEERIRELFDRAVE----SAPCVLFIDEVDA 327
>gi|357123904|ref|XP_003563647.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREIFNYA- 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 230 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V SGI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHASGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
Length = 389
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|448725635|ref|ZP_21708082.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797859|gb|EMA48297.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 405
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + + +FI+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 327
+ II N F L ++R GR ++ P RE + + G+ D+V +
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLDDDVAFD 347
Query: 328 DIVKLVDTFPGQSID 342
++ ++ D F G I+
Sbjct: 348 ELAEMADEFSGAEIE 362
>gi|390332227|ref|XP_001186944.2| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Strongylocentrotus purpuratus]
gi|390332229|ref|XP_003723449.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Strongylocentrotus purpuratus]
Length = 389
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ + P ++V + K L ++G G GK+
Sbjct: 138 LAEQIRELREVIELPLLNPELFERVGITPPKGCL------------LYGAPGTGKTLLAR 185
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 186 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HEPCVVFMDEIDAIGGR 241
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + G +V II+ N TL L+R
Sbjct: 242 R--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KVKIIMATNRPDTLDPALLR 291
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + I + ++ E +VKL D F G +
Sbjct: 292 PGRLDRKIEIPLPNEQARLEILKIHAAPITKHGDIDYEAVVKLSDGFNGADL 343
>gi|403215874|emb|CCK70372.1| hypothetical protein KNAG_0E01040 [Kazachstania naganishii CBS
8797]
Length = 785
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 514 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRAR 573
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 574 ASIP----CVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 614
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKE-- 327
N R I V G N + ++R GR++K F PT+E+++ + + R++ P
Sbjct: 615 NDRRGIFVIGATNRPDMIDPAMLRPGRLDKTIFIELPTKEEKLDILQTLLRSNGTPVAHD 674
Query: 328 -DIVKLVDTFPGQSIDFFGA 346
D ++++ F Q +F GA
Sbjct: 675 IDFAEIINDFRCQ--NFSGA 692
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + ++ + I +SA + SG +GE K IR + EA I
Sbjct: 211 LHGPPGCGKTSIANALAGELKVPFISVSAPSVVSGMSGESEKKIRDLFEEAQQIAP---- 266
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++DA + G Q + ++V A L+ D T + G P+IV
Sbjct: 267 CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELTLQKTGGK---------PVIV 316
Query: 282 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTF 336
G N +L A L R GR ++ P R+ + + T + E D ++L
Sbjct: 317 IGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKLSSTLKLDGEIDFLQLAKLT 376
Query: 337 PGQSIDFFGA 346
PG F GA
Sbjct: 377 PG----FVGA 382
>gi|34783985|gb|AAH57997.1| Psmc6 protein, partial [Mus musculus]
Length = 382
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 336 FPGQSI 341
F G +
Sbjct: 331 FNGADL 336
>gi|344304021|gb|EGW34270.1| hypothetical protein SPAPADRAFT_59691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 413
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 188 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 246
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 247 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 293
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
+ II+ N TL L+R GR+++ P + + T V K E
Sbjct: 294 LGQTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKVSKHGEFDFE 353
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D F G I
Sbjct: 354 AMVKMSDGFNGADI 367
>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
gi|354497334|ref|XP_003510776.1| PREDICTED: 26S protease regulatory subunit 10B [Cricetulus griseus]
gi|51702772|sp|P62333.1|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|55977306|sp|P62334.1|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|59800155|sp|P62335.1|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Conserved ATPase domain protein 44; Short=CADp44;
AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_b [Mus musculus]
gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|296483635|tpg|DAA25750.1| TPA: 26S protease regulatory subunit S10B [Bos taurus]
gi|335775939|gb|AEH58739.1| 26S protease regulatory subunit S10B-like protein [Equus caballus]
Length = 389
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|401623488|gb|EJS41585.1| rpt4p [Saccharomyces arboricola H-6]
Length = 437
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + S + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTSKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|418461396|ref|ZP_13032471.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
gi|359738499|gb|EHK87384.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
Length = 741
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + + + V+ + +F L V P + I+G G
Sbjct: 467 MSTTDTLATGGLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGPPG 525
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 526 NGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIFLD 581
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 582 EVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATNRP 628
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 629 ELVDPALLRPGRLERLVYVP 648
>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
gi|119390895|sp|Q2KIW6.1|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
Length = 389
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
[synthetic construct]
gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
Length = 390
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
Length = 381
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 269
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329
Query: 336 FPGQSI 341
F G +
Sbjct: 330 FNGADL 335
>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
Length = 827
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 325
N R + V G N + ++R GR++K + PT E+R+ + + RT N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSP 709
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 283
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKED 328
P++V G N +L + L R GR ++ P E RI + + T N+ E+
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAM--TKNIKLEN 386
>gi|345795599|ref|XP_003434055.1| PREDICTED: 26S protease regulatory subunit 10B-like [Canis lupus
familiaris]
Length = 418
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 306
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 336 FPGQSI 341
F G +
Sbjct: 367 FNGADL 372
>gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group]
gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K FL + +K P + ++G G GK+ + + + N + + + + GE A+LI
Sbjct: 165 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 223
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 224 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 272
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 319
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 273 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 329
Query: 320 RTDNVPKEDIVKLVDTFPGQSI 341
+ + E +VKL + F G +
Sbjct: 330 KHGEIDYEAVVKLAEGFNGADL 351
>gi|17298147|dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa Japonica Group]
Length = 377
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K FL + +K P + ++G G GK+ + + + N + + + + GE A+LI
Sbjct: 141 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 199
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 200 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 248
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 319
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 249 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 305
Query: 320 RTDNVPKEDIVKLVDTFPGQSI 341
+ + E +VKL + F G +
Sbjct: 306 KHGEIDYEAVVKLAEGFNGADL 327
>gi|381163299|ref|ZP_09872529.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
gi|379255204|gb|EHY89130.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
Length = 767
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + + + V+ + +F L V P + I+G G
Sbjct: 493 MSTTDTLATGGLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGPPG 551
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 552 NGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIFLD 607
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 608 EVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATNRP 654
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 655 ELVDPALLRPGRLERLVYVP 674
>gi|335280279|ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
Length = 403
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|149622137|ref|XP_001521658.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Ornithorhynchus anatinus]
Length = 400
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 238
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 239 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 288
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 348
Query: 336 FPGQSI 341
F G +
Sbjct: 349 FNGADL 354
>gi|15239140|ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
gi|75337115|sp|Q9SEI3.1|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4a;
AltName: Full=26S proteasome subunit 10B homolog A;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4a
gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
Length = 399
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>gi|395838570|ref|XP_003792186.1| PREDICTED: 26S protease regulatory subunit 10B [Otolemur garnettii]
Length = 403
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|334310858|ref|XP_001365047.2| PREDICTED: 26S protease regulatory subunit 10B-like [Monodelphis
domestica]
Length = 403
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
norvegicus]
gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
Length = 403
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|225021604|ref|ZP_03710796.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305680771|ref|ZP_07403578.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|224945595|gb|EEG26804.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305658976|gb|EFM48476.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 516
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 44/195 (22%)
Query: 164 GGKGQGKSF-------QCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADI 215
G G GKS Q EL ++ + I+ M GE E Q REA +
Sbjct: 273 GVPGCGKSLSAKNIAVQWELPLYRLDMGAILGMYVGESE------------QNLREALET 320
Query: 216 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
++ C L+I++++ G G+ +V +++ L + QE
Sbjct: 321 AERMAPCVLWIDEIEKGLAT--GSGDSSVTKRLIGQFLF--------------WLQESQA 364
Query: 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---REDRIGVCSGIFRTDNVPKEDIV 330
+V I+ T ND STL L+R GR ++ ++ PT R D I +C + +P +
Sbjct: 365 KVFIVATANDVSTLPPELLRKGRFDEIFFVDLPTETERTDIIDLCFWKYTNHAIPSHLVA 424
Query: 331 KLVDT---FPGQSID 342
+L + F G ID
Sbjct: 425 ELAEVSEGFAGSDID 439
>gi|402876178|ref|XP_003901853.1| PREDICTED: 26S protease regulatory subunit 10B [Papio anubis]
Length = 378
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 161 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 216
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 217 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 266
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 267 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 326
Query: 336 FPGQSI 341
F G +
Sbjct: 327 FNGADL 332
>gi|355714057|gb|AES04878.1| proteasome 26S ATPase subunit 6 [Mustela putorius furo]
Length = 370
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 153 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 208
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 209 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 258
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 259 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 318
Query: 336 FPGQSI 341
F G +
Sbjct: 319 FNGADL 324
>gi|449278480|gb|EMC86302.1| 26S protease regulatory subunit S10B, partial [Columba livia]
Length = 361
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 199
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 200 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 249
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 309
Query: 336 FPGQSI 341
F G +
Sbjct: 310 FNGADL 315
>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
gi|73963837|ref|XP_535701.2| PREDICTED: 26S protease regulatory subunit 10B [Canis lupus
familiaris]
gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
troglodytes]
gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit 10B [Callithrix jacchus]
gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit 10B [Pongo abelii]
gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
leucogenys]
gi|344273723|ref|XP_003408668.1| PREDICTED: 26S protease regulatory subunit 10B-like [Loxodonta
africana]
gi|348572189|ref|XP_003471876.1| PREDICTED: 26S protease regulatory subunit 10B-like [Cavia
porcellus]
gi|397523475|ref|XP_003831757.1| PREDICTED: 26S protease regulatory subunit 10B [Pan paniscus]
gi|410962256|ref|XP_003987690.1| PREDICTED: 26S protease regulatory subunit 10B [Felis catus]
gi|426232518|ref|XP_004010269.1| PREDICTED: 26S protease regulatory subunit 10B [Ovis aries]
gi|426376918|ref|XP_004055227.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
gi|351707287|gb|EHB10206.1| 26S protease regulatory subunit S10B [Heterocephalus glaber]
gi|380814880|gb|AFE79314.1| 26S protease regulatory subunit 10B [Macaca mulatta]
gi|410216102|gb|JAA05270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|410290648|gb|JAA23924.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|417400316|gb|JAA47112.1| Putative 26s protease regulatory subunit s10b-like protein
[Desmodus rotundus]
gi|431895846|gb|ELK05264.1| 26S protease regulatory subunit S10B [Pteropus alecto]
Length = 403
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
Length = 1020
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 27/209 (12%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
L L + P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 758 LKLLGLTAPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRQC 817
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
++ A + C +F ++ D+ + T + + ++VN L M
Sbjct: 818 FQRA----RNSAPCVIFFDEFDSLCPKRSDTAEGSAGTRVVNQLLTE------------M 861
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR------ 320
EE V ++ N + ++R GR++K + P +EDR+ + + +
Sbjct: 862 DGIEERKGVFLMAATNRPDIVDPAVLRPGRLDKILYVGLPAKEDRVDILRALTKNRTQPR 921
Query: 321 -TDNVPKEDIVKLVDTFPGQSIDFFGALR 348
D+V E + +L + + G D G +R
Sbjct: 922 LADDVELEKVAELTEGYTG--ADLAGLVR 948
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 35/244 (14%)
Query: 121 RHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI--------WGGKGQGKSF 172
R +D T D + MD ++ ++ + L++ + ++ LG+ G G GK+
Sbjct: 299 RMVDITFDDV----GGMDHILKNLCELLLHVIHPEIYRYLGLPPPRGFLLHGPPGSGKTL 354
Query: 173 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA- 231
+ + ++ + I + A EL +G +GE + IR + +AA + C LFI+++DA
Sbjct: 355 LAQAIAGQLNVRLIEVPATELVAGVSGESEERIRDVFEQAASL----SPCVLFIDEIDAI 410
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
+ R+ Q + ++V A L++ D + QE V +I N L
Sbjct: 411 SSNRVNA--QKDMERRIV-AQLLSSMD--------ALGKQEGGEGVIVIGATNRADALDP 459
Query: 292 PLIRDGRMEK--FYWAPTREDRIG----VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 345
L R GR ++ P RE R +C + +D + ++ KL + G +
Sbjct: 460 ALRRVGRFDQEISLGIPDREARKQILRIICWKLRISDTIDYGELAKLTPGYVGADL-LAL 518
Query: 346 ALRA 349
A+RA
Sbjct: 519 AIRA 522
>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Anolis carolinensis]
Length = 382
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 336 FPGQSI 341
F G +
Sbjct: 331 FNGADL 336
>gi|448310565|ref|ZP_21500381.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
gi|445607712|gb|ELY61588.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
Length = 405
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae]
Length = 392
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQLTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + + E IVKL D+
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDS 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|19263883|gb|AAH25134.1| Psmc6 protein, partial [Mus musculus]
Length = 293
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 182 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 241
Query: 336 FPGQSI 341
F G +
Sbjct: 242 FNGADL 247
>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
gallopavo]
Length = 372
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 210
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 211 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 260
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 261 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 320
Query: 336 FPGQSI 341
F G +
Sbjct: 321 FNGADL 326
>gi|448395892|ref|ZP_21568986.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
gi|445660473|gb|ELZ13269.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
Length = 389
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + + ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMF----NYVRDHQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNSPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|392589988|gb|EIW79318.1| 26S proteasome regulatory complex ATPase RPT4 [Coniophora puteana
RWD-64-598 SS2]
Length = 394
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAK 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 282
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKAEGIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL DTF G +
Sbjct: 341 AIVKLTDTFNGADL 354
>gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon
pisum]
Length = 395
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 144 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 191
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 192 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 247
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 248 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 297
Query: 296 DGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R D + + + I + + E IVKL D F G +
Sbjct: 298 PGRLDRKIEIPLPNEQARLDILKIHAAPITKQGEIDYEAIVKLSDNFNGADL 349
>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
Length = 444
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKSPTGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + L M +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL--------LTQMDGFDS 324
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
+ II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 325 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEVFKIHTTNVKKAGEFDFE 384
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 385 AAVKMSDGFNGADI 398
>gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara]
Length = 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 277
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 278 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 337
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 338 AVVKLAEGFNGADL 351
>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length = 396
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 336 FPGQSI 341
F G +
Sbjct: 345 FNGADL 350
>gi|256374585|ref|YP_003098245.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
gi|255918888|gb|ACU34399.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
Length = 734
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D + G LD+ D + A + + + +F L V+ P L ++G G
Sbjct: 458 MSTSDTLRTGGLTLDDVGDMAEVKQALTEAALWPLQYPDSFARL-GVEPPRGLLLYGPPG 516
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + + EL GE + +R+ +R AA+ +F++
Sbjct: 517 CGKTFLVRALAGTGKLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVFLD 572
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V +++V A L + + E R I++ +
Sbjct: 573 EVDALAPRRGQSSDSGVADRVVAALLTEL-------------DGVEPLRDVIVLGATNRP 619
Query: 288 TLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKL 332
L P L+R GR+E+ + P E R+ + R N P + V+L
Sbjct: 620 ELVDPALLRPGRLERLVYVPPPDAEARVEILRSASR--NTPLAEDVEL 665
>gi|293333701|ref|NP_001169629.1| uncharacterized protein LOC100383510 [Zea mays]
gi|224030533|gb|ACN34342.1| unknown [Zea mays]
gi|413926226|gb|AFW66158.1| hypothetical protein ZEAMMB73_031713 [Zea mays]
Length = 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
Length = 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|195493667|ref|XP_002094514.1| GE21865 [Drosophila yakuba]
gi|194180615|gb|EDW94226.1| GE21865 [Drosophila yakuba]
Length = 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + +G + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|428215715|ref|YP_007088859.1| AAA ATPase [Oscillatoria acuminata PCC 6304]
gi|428004096|gb|AFY84939.1| AAA+ family ATPase [Oscillatoria acuminata PCC 6304]
Length = 544
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRLR 331
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ + + C L+I+++D G + GGT + ++ V TL+ +
Sbjct: 332 QMIQLAEAMSPCVLWIDEIDKAFGNISGGTDGDSGTSRRVFGTLIT-------------W 378
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 379 MQEKTAPVFIVATANNVRILPAELLRKGRFDEIFFLNLPTETER 422
>gi|428217192|ref|YP_007101657.1| AAA ATPase [Pseudanabaena sp. PCC 7367]
gi|427988974|gb|AFY69229.1| AAA ATPase central domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 209
LPN K L++GI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPKGVLLMGI---QGTGKSL-CAKAIAHLWRLPLLRLDVGRLFGSLVGQS----ESRT 311
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
R+ + + C L+++++D MGGT+ + +Q V TL+ +
Sbjct: 312 RQTIQLTEALAPCILWMDEIDKAFAGMGGTSTDSGTSQRVFGTLLT-------------W 358
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE++ V ++ T N+ + L L+R GR ++ ++ P++ +R
Sbjct: 359 MQEKSSPVFVVATANNINALPPELLRKGRFDEIFFINLPSQAER 402
>gi|375102754|ref|ZP_09749017.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
gi|374663486|gb|EHR63364.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
Length = 747
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + + + V+ + +F L V P + I+G G
Sbjct: 473 MSTTDTLATGGITLDDVGDMAQVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGPPG 531
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 532 NGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPSLIFLD 587
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 588 EVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPMRDVVVVGATNRP 634
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 635 ELVDPALLRPGRLERLIYVP 654
>gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni]
gi|360045512|emb|CCD83060.1| putative 26s protease regulatory subunit S10b [Schistosoma mansoni]
Length = 395
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 336 FPGQSI 341
F G +
Sbjct: 344 FNGADL 349
>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
Length = 825
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQRA- 611
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 653
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 329
N R + V G N + ++R GR++K + P+ E+R+ + I R++N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSPEERLEILKTIVRSNNSPLHSD 713
Query: 330 VKLV 333
V LV
Sbjct: 714 VSLV 717
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + +SA + SG +GE K +R + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAK 283
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 SVAP----CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR 320
P++V G N +L + L R GR ++ P E RI + + +
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLTVPNEEQRISILKAMTK 380
>gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays]
gi|194702936|gb|ACF85552.1| unknown [Zea mays]
gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays]
gi|413936158|gb|AFW70709.1| 26S protease regulatory subunit S10B [Zea mays]
Length = 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis]
Length = 434
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 267
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 317
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 326
+I+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 318 ---TKVIMATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFK--IHTSNVKKAGEFD 372
Query: 327 -EDIVKLVDTFPGQSI 341
E VK+ D F G I
Sbjct: 373 FEAAVKMSDGFNGADI 388
>gi|448397657|ref|ZP_21569690.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
gi|445672756|gb|ELZ25327.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448337724|ref|ZP_21526798.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
gi|445624925|gb|ELY78296.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|410074777|ref|XP_003954971.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
gi|372461553|emb|CCF55836.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
Length = 424
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 199 IKPPKGVLLYGPPGTGKTLLAKAVSATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 257
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 258 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 307
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 308 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTANVKKVGEFDFE 364
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 365 AAVKMSDGFNGADI 378
>gi|209876752|ref|XP_002139818.1| 26S proteasome regulatory subunit S10B [Cryptosporidium muris RN66]
gi|209555424|gb|EEA05469.1| 26S proteasome regulatory subunit S10B, putative [Cryptosporidium
muris RN66]
Length = 391
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M + + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMSCSFMKVVASAIVDKYIGESARVIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 225 ---KEHQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R+ + + + DN+ +
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILRIHAEKLSKQDNIDYD 331
Query: 328 DIVKLVDTFPGQSI 341
I KL D F G +
Sbjct: 332 SICKLCDGFNGADL 345
>gi|169806672|ref|XP_001828080.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
gi|161779208|gb|EDQ31232.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
Length = 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ ++V + M + I + A L GE AK++R+ + A +
Sbjct: 172 LYGPPGTGKTLLAKIVASTMDVTFIKVVASSLIEKYIGESAKMVREMFAYA----RLKAP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA G T + +++ V TLM + + QL G + + V +I+
Sbjct: 228 CIIFLDEIDAIGG--ARTNESNSSDREVQRTLMELLN-----QLDGFSDLDG---VKVIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTDNVPKEDIVKLVDTF 336
N L + L+R GR+++ P R++ + + S D + + IVK+ F
Sbjct: 278 ATNRPDILDSALLRPGRLDRKIEIPLPNEHGRKEILKIHSKNMNQDQIDLDTIVKMSSGF 337
Query: 337 PGQSI 341
G +
Sbjct: 338 NGADL 342
>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
gi|342306167|dbj|BAK54256.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 747
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
N + P + ++G G GK+ + V + G N I + E+ S GE K IR+
Sbjct: 479 LFNKSGITPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIRE 538
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLP 266
+R+A ++ +F +++DA A G TT V ++VN L + P N
Sbjct: 539 IFRKA----RQAAPTIIFFDEIDAIAPMRGLTTDSGVTERIVNQLLAEMDGIVPLN---- 590
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP- 325
+V +I N L L+R GR ++ + P + R T NVP
Sbjct: 591 ---------KVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPL 641
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
EDI +D ++ + GA
Sbjct: 642 AEDIT--LDELAEKTEGYTGA 660
>gi|397774902|ref|YP_006542448.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
gi|397683995|gb|AFO58372.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
Length = 421
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 204 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 259
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 260 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 309
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 310 ATNRFDMLDRAILRPGRFDRLIEVP 334
>gi|367000972|ref|XP_003685221.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
gi|357523519|emb|CCE62787.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
Length = 455
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 230 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 289
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 290 D----HEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFENLGQ 338
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 339 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 395
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 396 AAVKMSDGFNGADI 409
>gi|448344921|ref|ZP_21533822.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
gi|445636471|gb|ELY89632.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448343686|ref|ZP_21532607.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
gi|445622602|gb|ELY76053.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|302687350|ref|XP_003033355.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
gi|300107049|gb|EFI98452.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
Length = 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
FL + +K P + ++G G GK+ V A + N + + + + GE A+++R+
Sbjct: 159 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARVVRE 217
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A ++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G
Sbjct: 218 MFGYA----REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDG 266
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRT 321
+ R +I+ N TL L+R GR+++ P + R+ + + + +
Sbjct: 267 F---DSLGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKA 323
Query: 322 DNVPKEDIVKLVDTFPGQSI 341
+++ E IVKL D+F G +
Sbjct: 324 EDIDYEAIVKLSDSFNGADL 343
>gi|451848921|gb|EMD62226.1| hypothetical protein COCSADRAFT_39001 [Cochliobolus sativus ND90Pr]
gi|451998748|gb|EMD91212.1| hypothetical protein COCHEDRAFT_1137748 [Cochliobolus
heterostrophus C5]
Length = 393
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + SG TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSGSVVTDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|190347457|gb|EDK39727.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 125 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182
NT+ GL + +V+ KN +K P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 183 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 242
N I A + GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 243 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 303 YWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 336 FPGQSI 341
F G +
Sbjct: 344 FNGADL 349
>gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Ogataea parapolymorpha DL-1]
Length = 422
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 197 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVREMFSYA- 255
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 256 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 304
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P R+ + S I + E
Sbjct: 305 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKIKKQGEFDFE 362
Query: 328 DIVKLVDTFPGQSID-------FFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EG 378
+VK+ D F G I FF A+R E R +I + + + +++V++K EG
Sbjct: 363 ALVKMSDGFNGADIRNVVTEAGFF-AIR------EDRDYIIQSDLMKAVRKMVDNKKLEG 415
Query: 379 PPTFEQ 384
+E+
Sbjct: 416 KLEYEK 421
>gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum]
gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 336 FPGQSI 341
F G +
Sbjct: 344 FNGADL 349
>gi|389610171|dbj|BAM18697.1| 26S protease regulatory subunit rpt4 [Papilio xuthus]
Length = 396
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 336 FPGQSI 341
F G +
Sbjct: 345 FNGADL 350
>gi|433591994|ref|YP_007281490.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|448334330|ref|ZP_21523508.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
gi|433306774|gb|AGB32586.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|445620216|gb|ELY73722.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|194869501|ref|XP_001972464.1| GG15543 [Drosophila erecta]
gi|190654247|gb|EDV51490.1| GG15543 [Drosophila erecta]
Length = 398
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + +G + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
Length = 415
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 248
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 326
+ +I+ N TL L+R GR+++ P R+ + T V K
Sbjct: 298 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFK--IHTTKVAKQGEFD 353
Query: 327 -EDIVKLVDTFPGQSI 341
E +VK+ D F G I
Sbjct: 354 FEAVVKMSDGFNGADI 369
>gi|449504593|ref|XP_002200452.2| PREDICTED: 26S protease regulatory subunit 10B [Taeniopygia
guttata]
Length = 391
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 229
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 279
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 339
Query: 336 FPGQSI 341
F G +
Sbjct: 340 FNGADL 345
>gi|389739234|gb|EIM80428.1| 26S proteasome regulatory complex ATPase RPT4 [Stereum hirsutum
FP-91666 SS1]
Length = 399
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A M N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 327
R +I+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHSNPVNKHGDIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 341 AIVKLTDAFNGADL 354
>gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni]
Length = 368
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 336 FPGQSI 341
F G +
Sbjct: 344 FNGADL 349
>gi|448328071|ref|ZP_21517387.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
gi|445616666|gb|ELY70286.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|324508906|gb|ADY43754.1| 26S protease regulatory subunit 4 [Ascaris suum]
Length = 422
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V I + +L N+GE AKL+R+ +R A K+
Sbjct: 206 LYGEPGTGKTLLAKAVAHSTSATFIRATGADLIQKNSGEGAKLVRELFRLA----KESAP 261
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNQEENPRVP 278
C +FI+++DA GT +Y ++ + V TL+ + + Q+ G E V
Sbjct: 262 CIVFIDEIDA-----VGTKRYDTSSGGEREVQRTLLELLN-----QMDGF---ESRGDVK 308
Query: 279 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKEDIV 330
II+ N L LIR GR+++ P +++ + SG+ D V E I+
Sbjct: 309 IIMATNRIDVLDPALIRPGRIDRKIELPKPDEKTKLRIFQIHTSGMKIADEVKFEKII 366
>gi|194748363|ref|XP_001956616.1| GF24499 [Drosophila ananassae]
gi|190623898|gb|EDV39422.1| GF24499 [Drosophila ananassae]
Length = 398
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + +G + + V E IVKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEVDYEAIVKLSDL 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|283046720|ref|NP_001164306.1| peroxisome biogenesis factor 1 [Danio rerio]
gi|154200022|gb|ABS71030.1| peroxin 1 [Danio rerio]
Length = 1237
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F +LP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ-LP 266
++ A ++ K C LF ++ D+ A R G V +++VN L + V+ L
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDN-TGVTDRVVNQLLTQL----DGVEGLT 931
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDN 323
G+Y ++ + L P L+R GR++K + P RE R+ + + T +
Sbjct: 932 GVY----------VLAASSRPDLIDPALLRPGRLDKSLYCPPPDREARLEILRAL--THS 979
Query: 324 VPKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISEVG 364
VP V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 980 VPLAADVDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|403278020|ref|XP_003930633.1| PREDICTED: 26S protease regulatory subunit 10B [Saimiri boliviensis
boliviensis]
Length = 428
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
Length = 392
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGEIDYEAVVKLSDG 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|448382766|ref|ZP_21562261.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
gi|445661235|gb|ELZ14026.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|434393705|ref|YP_007128652.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
gi|428265546|gb|AFZ31492.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
Length = 504
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D +GG +++ + +A
Sbjct: 309 QMIQVAEALSPCILWIDEIDKAFAGIGGKGDAGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 325
E+ V ++ T ND +L ++R GR ++ ++ PT+E+R + + R N+
Sbjct: 356 -EKTSPVFVVATANDIQSLPPEMLRKGRFDEIFFVGLPTQEERKAIFTVHLSRLRPHNIK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 TYDIERLAYETP----DFSGA 431
>gi|268325728|emb|CBH39316.1| cell division control protein 48 [uncultured archaeon]
Length = 739
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
+ +L N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGILLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
+ +R+A K+ C +F++++D+ A G V ++V+ L
Sbjct: 544 EIFRKA----KQSSPCIIFLDEIDSIAPIRGAGLDSHVTERVVSQILTE----------- 588
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
M EE V II N + L+R GR+++ + +PT+E R
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAR 634
>gi|222641172|gb|EEE69304.1| hypothetical protein OsJ_28586 [Oryza sativa Japonica Group]
Length = 318
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 438 AAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
A Q +PVPEGCTDP A N+DPTA S+D C Y F
Sbjct: 283 AQQAGNLPVPEGCTDPVANNFDPTAMSNDSICLYTF 318
>gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae]
Length = 391
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 229
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 279
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDN 339
Query: 336 FPGQSI 341
F G +
Sbjct: 340 FNGADL 345
>gi|357139615|ref|XP_003571376.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ +P +L ++G G GKS+ E + ++G ++S G++ S AK ++Q + EA
Sbjct: 374 IPIPSLL-LYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSEAK 432
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
I + +F++++D+ + GG Q+ + ++VN L ++
Sbjct: 433 AIADQTGGVVVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHL 475
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 28/201 (13%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LPN K L+ GI +G GKS + + A+ + + + G L G GE +RQ +
Sbjct: 259 LPNPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIK 315
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
A + C L+I+++D + +N++ + +A
Sbjct: 316 LAEAV----SPCVLWIDEIDKAFSQNYSRGDSGTSNRVFGTFITWLA------------- 358
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVP 325
E+ V I+ T N+ L A LIR GR+++ +W P RE V R +
Sbjct: 359 -EKTSPVFIVATANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRPERFK 417
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
+ +S+DF GA
Sbjct: 418 NNEFD--FHLLASRSLDFSGA 436
>gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 421
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|429964182|gb|ELA46180.1| 26S proteasome subunit P45 family protein [Vavraia culicis
'floridensis']
Length = 396
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + A M +N + + A L GE +++IR+ ++ A ++
Sbjct: 179 LYGPPGTGKTLLARAIAATMDVNFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 234
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 235 CIIFLDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFTSLD---KVKVIM 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 310
N L L+R GR+++ P D
Sbjct: 285 ATNRPDILDPALLRPGRLDRKIEIPLPND 313
>gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group]
Length = 400
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|384488185|gb|EIE80365.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 396
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 171 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 230 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 278
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 279 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGHIAKHGDIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 337 AIVKLSDGFNGADL 350
>gi|345567910|gb|EGX50812.1| hypothetical protein AOL_s00054g898 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHAAGVAKAGEIDYE 333
Query: 328 DIVKLVDTFPGQSIDFF----GALRARVYDDEV 356
+VK+ D F G + G R Y DE+
Sbjct: 334 GLVKMSDGFNGADLRNVVTEAGMFAIRDYRDEI 366
>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
Length = 791
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 544 IKPPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKAR 603
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C LF +++D+ A R G V ++V+ L +L G+ EE
Sbjct: 604 QVAP----CVLFFDEIDSLAPRRGTGGDTHVTERVVSQLL---------TELDGL---EE 647
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 327
V +I N + L+R GR+E+ + P +++ + G+ ++V E
Sbjct: 648 LKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDEKARLEIFKIHTRGMPLDEDVNLE 707
Query: 328 DIVKLVDTFPGQSID 342
++ K + + G I+
Sbjct: 708 ELAKKTEGYSGADIE 722
>gi|390472883|ref|XP_002756429.2| PREDICTED: 26S protease regulatory subunit 10B-like [Callithrix
jacchus]
Length = 402
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 240
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR+ ++ T ++ + TLM L M + RV +I+
Sbjct: 241 CIIFMDEIDAIGGRL--FSEGTSADREIQRTLME--------SLNQMDGFDTLHRVKMIM 290
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 350
Query: 336 FPGQSI 341
F G +
Sbjct: 351 FNGADL 356
>gi|425899584|ref|ZP_18876175.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397890300|gb|EJL06782.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 853
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LGI G GKS + + G + + + G L+ GE + IR R I+
Sbjct: 480 LLLGI---PGTGKSLAAKEIARLWGFSLVRLDMGALQDKWLGESERNIRSALR----IVD 532
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
C L+I+++D G G+ ++T + Q VNATL+ + QE
Sbjct: 533 AMSPCILWIDEIDKGLGQ-----EHTHSAAQNVNATLLT-------------WLQESRAP 574
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDN-----VPKEDI 329
++ T N F L L R GR + F+ P E R+ + N P + +
Sbjct: 575 AFVVATANRFGGLPPELTRAGRFDGRFFFGCPGSEGRLEILRIHLAARNCELSEAPLDTV 634
Query: 330 VKLVDTFPGQSID 342
+ L + F G ++
Sbjct: 635 ISLTEGFTGAELE 647
>gi|384501822|gb|EIE92313.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 395
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 170 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 229 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 277
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 278 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGNIAKHGDIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 336 AIVKLSDGFNGADL 349
>gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group]
Length = 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|398365977|ref|NP_014902.3| proteasome regulatory particle base subunit RPT4 [Saccharomyces
cerevisiae S288c]
gi|2506090|sp|P53549.4|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease
subunit SUG2; AltName: Full=Proteasomal cap subunit
gi|403071972|pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae]
gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae]
gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
RM11-1a]
gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291]
gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118]
gi|285815133|tpg|DAA11026.1| TPA: proteasome regulatory particle base subunit RPT4
[Saccharomyces cerevisiae S288c]
gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB]
gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796]
gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13]
gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3]
gi|349581412|dbj|GAA26570.1| K7_Rpt4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296586|gb|EIW07688.1| Rpt4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|300790371|ref|YP_003770662.1| ATPase [Amycolatopsis mediterranei U32]
gi|384153901|ref|YP_005536717.1| ATPase [Amycolatopsis mediterranei S699]
gi|399542249|ref|YP_006554911.1| ATPase [Amycolatopsis mediterranei S699]
gi|299799885|gb|ADJ50260.1| ATPase [Amycolatopsis mediterranei U32]
gi|340532055|gb|AEK47260.1| ATPase [Amycolatopsis mediterranei S699]
gi|398323019|gb|AFO81966.1| ATPase [Amycolatopsis mediterranei S699]
Length = 755
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 24/244 (9%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ + L + + + V+ + +F L V+ P + ++G G
Sbjct: 478 MSTSDNLATGGLTLDDVGNMLDVKQSLTEAVLWPLRYPDSFARL-GVEPPRGVLLYGPPG 536
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 537 GGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPALIFLD 592
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V +++V A L +L G+ E +++ +
Sbjct: 593 EIDALAPRRGQSSDSGVADRVVAALL---------TELDGVEPMREV----VVLGATNRP 639
Query: 288 TLYAP-LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDF 343
L P L+R GR+E+ + P + + N P D+V + T G S
Sbjct: 640 ELVDPALLRPGRLERRVYVPPPDAEARAAILAASSKNTPLAGDVDLVAVASTLDGYSAAD 699
Query: 344 FGAL 347
AL
Sbjct: 700 CAAL 703
>gi|218198520|gb|EEC80947.1| hypothetical protein OsI_23654 [Oryza sativa Indica Group]
Length = 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA----REHQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + QL G +E +V +I+
Sbjct: 244 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DELGKVKMIM 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N L L+R GR+++ P + R+ V +GI + + E +VKL +
Sbjct: 294 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKLAEG 353
Query: 336 FPGQSI 341
F G +
Sbjct: 354 FNGADL 359
>gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
Length = 393
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 336 FPGQSI 341
F G +
Sbjct: 342 FNGADL 347
>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
Length = 415
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 190 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 249
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 250 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 295
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 327
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 296 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINFN 355
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 384
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 356 NICKLCDGFNGADLRNICTEAGIHAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 414
>gi|423074649|ref|ZP_17063374.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
gi|361854469|gb|EHL06535.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
Length = 493
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 186 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 243
+ +S E AG A +R+ +++A ++ KK K +FI+++D + G +
Sbjct: 127 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 244 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 237
Query: 304 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
P +E R+ + T N P V L + ++ +F GA
Sbjct: 238 KVDLPDKEGRLAILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 279
>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + +G+N + + + + GE A++IR+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYA- 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 223 ---KEHEPCVIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 271
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + S + + ++ E
Sbjct: 272 --RTKVIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLSKVAKQGDIDYE 329
Query: 328 DIVKLVD 334
IVKL D
Sbjct: 330 AIVKLTD 336
>gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti]
gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti]
gi|108879818|gb|EAT44043.1| AAEL004563-PA [Aedes aegypti]
Length = 393
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 336 FPGQSI 341
F G +
Sbjct: 342 FNGADL 347
>gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 491
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 186 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 243
+ +S E AG A +R+ +++A ++ KK K +FI+++D + G +
Sbjct: 125 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 184
Query: 244 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 185 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 235
Query: 304 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
P +E R+ + T N P V L + ++ +F GA
Sbjct: 236 KVDLPDKEGRLAILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 277
>gi|392577846|gb|EIW70974.1| hypothetical protein TREMEDRAFT_37495 [Tremella mesenterica DSM
1558]
Length = 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 179 IKPPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVSSAIVDKYIGESARLVREMFAYA- 237
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ + ++ + TLM + + Q+ G +
Sbjct: 238 ---KEHEPCIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DS 284
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 285 LGKTKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 344
Query: 328 DIVKLVDTFPGQSI 341
+VKL D F G +
Sbjct: 345 AVVKLSDGFNGADL 358
>gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 118 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 177
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 178 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 223
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 224 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 283
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 284 AVVKLAEGFNGADL 297
>gi|443316542|ref|ZP_21045982.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442783845|gb|ELR93745.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 510
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
NLP + LI+GI +G GKS + + + + + + AG L GE K
Sbjct: 276 FNLPTPRGILIVGI---QGCGKSLAAKTIAREWSMPLLKLDAGRLYDKYIGESEK----N 328
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
+R A + + L+I++++ G+ + ++ ++ + L
Sbjct: 329 FRRAVTLAETMAPAILWIDEIEKSMGQSDSDSDGGLSRRLFGSFLT-------------- 374
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVP 325
+ QE++ V ++ T ND S + L+R GR ++ ++ P ++R+G+ + R P
Sbjct: 375 WLQEKSEEVFVVATANDLSRIPPELLRKGRFDEIFFVDLPDEQERVGILQIHLIRRKQDP 434
Query: 326 KE----DIVKLVDTFPGQSID 342
+ +V++ D + G I+
Sbjct: 435 RRFDLPTLVQVTDGYSGAEIE 455
>gi|365986659|ref|XP_003670161.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
gi|343768931|emb|CCD24918.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
Length = 443
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 326
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 327 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 383
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 384 AAVKMSDGFNGADI 397
>gi|365758247|gb|EHN00098.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 327
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTEKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
Length = 392
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGGIDYEAVVKLSDG 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|426359627|ref|XP_004047068.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|385302903|gb|EIF47009.1| 26s protease subunit rpt4 [Dekkera bruxellensis AWRI1499]
Length = 359
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 134 IKQPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLVREMFSYA- 192
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 193 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 241
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + S + + + E
Sbjct: 242 --QTKVIMATNRPDTLDPALLRAGRLDRKIEVPLPNEAGRLEIFKIHMSKVQKKGEIELE 299
Query: 328 DIVKLVDTFPGQSI 341
+V++ D F G I
Sbjct: 300 TLVRMSDGFNGADI 313
>gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
YJM789]
Length = 437
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+ + P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLHRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|409041194|gb|EKM50680.1| hypothetical protein PHACADRAFT_264077 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A + N + + A + GE A+++R+ + A K+ +
Sbjct: 183 LYGPPGTGKTLLARAVAATLNTNFLKVVASAIVDKYIGESARVVREMFGYA----KEHEP 238
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIM 288
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + ++ + E IVKL D+
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKSGEIDYEAIVKLSDS 348
Query: 336 FPGQSI 341
F G +
Sbjct: 349 FNGADL 354
>gi|383622082|ref|ZP_09948488.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|448698594|ref|ZP_21699061.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|445780702|gb|EMA31579.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|431794110|ref|YP_007221015.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784336|gb|AGA69619.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 493
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 186 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 243
+ +S E AG A+ +R+ +R+A D+ KK K +FI+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRRLFRKARDLAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 244 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
+Q +N L V++ G+ ++E+ P++ I+ N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGSEEQGPQILIVAATNRAEALDPALLRPGRFDRQV 237
Query: 304 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
P RE R+ + N P V L + ++ +F GA
Sbjct: 238 KVDLPDREGRLAILK--IHAKNKPLATDVDL-EQIAQETYNFSGA 279
>gi|444318988|ref|XP_004180151.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
gi|387513193|emb|CCH60632.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
Length = 443
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 326
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLDIFKIHTSKVKKVGEFDFE 383
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 384 AAVKMSDGFNGADI 397
>gi|303389811|ref|XP_003073137.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302282|gb|ADM11777.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
Length = 391
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---KRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRT-DNVPKE 327
N V +I+ N L L+R GR+++ P R++ + + S + + + +
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEVLKIHSKLMNAIEEIDYD 331
Query: 328 DIVKLVDTFPGQSI 341
+VKL F G +
Sbjct: 332 SLVKLTAGFNGADL 345
>gi|391332687|ref|XP_003740763.1| PREDICTED: 26S protease regulatory subunit 10B-like [Metaseiulus
occidentalis]
Length = 403
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + M N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASNMDSNFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + I + ++ E +VKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHARSITKHGDIDWEAVVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|448494769|ref|ZP_21609584.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
gi|445688992|gb|ELZ41238.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|412986591|emb|CCO15017.1| unnamed protein product [Bathycoccus prasinos]
Length = 1277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+F + G+ I + E+ S GE K IR+ ++ A +
Sbjct: 1011 LYGPPGVGKTFVAHAAITESGMRCIKVRGPEIMSKFIGESEKAIREVFKRA----RAAAP 1066
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
CCLF ++ D+ R G+ V +++VN L I +L G+Y +I
Sbjct: 1067 CCLFFDEFDSICPRR-GSDNAGVMDRLVNQLLTEIDGFE---ELRGVY---------VIA 1113
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV 314
T + T+ L+R GR++ + PT ++R +
Sbjct: 1114 TSSRPDTMDPALLRPGRLDNLLFLDWPTEKERYDI 1148
>gi|170086734|ref|XP_001874590.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
gi|164649790|gb|EDR14031.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
Length = 404
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A++IR+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVIREMFGYAR 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + + + ++ + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|409357579|ref|ZP_11235957.1| ATP-dependent zinc metalloprotease FtsH 2 [Dietzia alimentaria 72]
Length = 743
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 111 SSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKGQ 168
S + +S G LD+ D + + A + V+ + ++F L V+ P + ++G G
Sbjct: 468 SGTEELSLGAITLDDVGDMVEVRQALTETVLWPLQHRESFERL-GVQPPRGVLLYGPPGC 526
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GK+F + A + M+ GEL G K +R +R A D +F+++
Sbjct: 527 GKTFIVRALAASGRLTVHMVKGGELMDKWVGSSEKAVRDLFRRARD----SAPSLVFLDE 582
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNI--ADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286
+DA A R G ++ V +++V A L + A+ NV + G N+ E
Sbjct: 583 IDALAPRRGQSSDSGVGDRVVAALLTELDGAEPLDNVVVLGATNRPE------------- 629
Query: 287 STLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 630 --LIDPALLRPGRLERLVFVP 648
>gi|357627263|gb|EHJ77001.1| 26S proteasome regulatory ATPase subunit 10B [Danaus plexippus]
Length = 373
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 156 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 211
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 261
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 262 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDA 321
Query: 336 FPGQSI 341
F G +
Sbjct: 322 FNGADL 327
>gi|403417831|emb|CCM04531.1| predicted protein [Fibroporia radiculosa]
Length = 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYA- 233
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTDN-VPKE 327
R +I+ N TL L+R GR+++ P R + + + +G D + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALMRPGRLDRKIEIPLPNEQARLEILKIHAGPVNKDKEIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata]
Length = 436
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 211 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 269
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 270 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 319
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N TL L+R GR+++ P
Sbjct: 320 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 349
>gi|413954589|gb|AFW87238.1| hypothetical protein ZEAMMB73_492879 [Zea mays]
Length = 447
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 276
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 277 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 323
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 324 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAAGIAKHGEIDYE 383
Query: 328 DIVKLVDTFPG 338
+VKL + F G
Sbjct: 384 AVVKLAEGFNG 394
>gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa]
gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa]
gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa]
gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|448532164|ref|ZP_21621238.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
gi|445706780|gb|ELZ58654.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
Length = 433
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 266
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 267 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 315
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 316 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 373
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 374 AAVKMSDGFNGADI 387
>gi|327310719|ref|YP_004337616.1| AAA ATPase [Thermoproteus uzoniensis 768-20]
gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus uzoniensis 768-20]
Length = 730
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K+IR+ +++A +
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMIREIFQKA----RMAAP 547
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +FI+++DA A G V+ ++V L ++ G+ E V +I
Sbjct: 548 CVVFIDEIDALASARGLGADSFVSERVVAQLL---------AEMDGIRTLEN---VVVIG 595
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 335
N + L+R GR ++ + P + R + + T NVP E++ + +
Sbjct: 596 ATNRPDLVDPALLRPGRFDRIIYVPPPDFRARLDIFLIHTRNVPLAKDVDLEELARRTEG 655
Query: 336 FPGQSIDF------FGALRARVYDDEV 356
+ G I+ F ALR + EV
Sbjct: 656 YSGADIELVVREATFMALREDINAKEV 682
>gi|15219503|ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|75336159|sp|Q9MAK9.1|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4b;
AltName: Full=26S proteasome subunit S10B homolog B;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4b
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana]
gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana]
gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 399
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>gi|389592578|ref|XP_003721730.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
gi|321438263|emb|CBZ12016.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
Length = 396
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 334
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSE 342
Query: 335 TFPGQSI 341
F G +
Sbjct: 343 GFNGADL 349
>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
Length = 810
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 27/222 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 557 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 612
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R G V ++++N L M EEN V +I
Sbjct: 613 TVIFIDEIDAIAPRRGSDVNR-VTDRLINQLLTE------------MDGIEENSGVVVIA 659
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 335
N L L+R GR ++ P + + + T NVP E++ K +
Sbjct: 660 ATNRPDILDPALLRPGRFDRIILVPAPDVKARLEIFKVHTRNVPLAKDVNLEELAKRTEG 719
Query: 336 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKE 377
+ G I+ +R ++ +R+ ISE GI + G R + +E
Sbjct: 720 YTGADIE--AVVREAAFNT-MRRAISE-GIIKPGTRASDIRE 757
>gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi]
gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi]
Length = 398
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T +++ + TLM + + G +V II+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDALG--------QVKIIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLEILKIHAAPLAKRGEIDYEAVVKLSDL 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|448719557|ref|ZP_21703127.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
gi|445783258|gb|EMA34092.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|387915818|gb|AFK11518.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6
[Callorhinchus milii]
Length = 389
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAVVKLSDG 337
Query: 336 F 336
F
Sbjct: 338 F 338
>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
Length = 828
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + + N I + EL + GE + +RQ ++ AA
Sbjct: 555 MYGPPGCGKTLLAKAIANECQANFISVKGPELLNKYVGESERAVRQVFQRAA----ASSP 610
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F ++ DA A + GG ++VN L ++ G+ + E V II
Sbjct: 611 CVIFFDEFDALAPKRGGDGGNQATERVVNQLL---------TEMDGLEKRSE---VFIIA 658
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLV 333
N + + R GR++K + PT E+R+ + + T +P + +V LV
Sbjct: 659 ATNRPDIIDPAMCRPGRLDKMVYVPLPTPEERVEILKTL--TQKIPIDPLVDLV 710
>gi|448482363|ref|ZP_21605484.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
gi|445821427|gb|EMA71219.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|448738116|ref|ZP_21720147.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445802700|gb|EMA53004.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + + +FI+++DA A + T T + V T+M + L M E+
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFED 287
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 327
+ II N F L ++R GR ++ P RE + + G+ D+V +
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLADDVEFD 347
Query: 328 DIVKLVDTFPGQSID 342
++ + D F G I+
Sbjct: 348 ELATMADEFSGAEIE 362
>gi|448497864|ref|ZP_21610607.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
gi|445699417|gb|ELZ51446.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|378755356|gb|EHY65383.1| 26S protease regulatory subunit S10B [Nematocida sp. 1 ERTm2]
Length = 389
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V P + ++G G GK+ V A + N + + + + GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 327
RV +I+ N L L+R GR+++ PT + R+ + + + + ++
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILKIHSAKMEKKGDIDYN 329
Query: 328 DIVKLVDTFPGQSI 341
IVK+ F G I
Sbjct: 330 TIVKMSHGFNGADI 343
>gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1]
Length = 428
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|448434482|ref|ZP_21586282.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
gi|445685110|gb|ELZ37471.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|448427600|ref|ZP_21583915.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
gi|445678287|gb|ELZ30781.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|448374252|ref|ZP_21558137.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
gi|445660929|gb|ELZ13724.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
Length = 404
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V K I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 243 AVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|375083130|ref|ZP_09730162.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
gi|374742216|gb|EHR78622.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
Length = 535
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 282 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 337
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 338 TVVFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 384
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 335
N L L+R GR ++ P +++ + T NVP E++ K +
Sbjct: 385 ATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVSLEELAKRTEG 444
Query: 336 FPGQSID 342
+ G I+
Sbjct: 445 YTGADIE 451
>gi|402223610|gb|EJU03674.1| 26S proteasome subunit P45 [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 149 LSEQVRELREVIELPLMNPELFQRVGIKPPKGVL------------LYGPPGTGKTLLAR 196
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V A M N + + + + GE A+L+R+ + A ++ + C +F++++DA GR
Sbjct: 197 AVAATMSTNFLKVVSSAIVDKYIGESARLVREMFGYA----REHEPCIIFMDEIDAIGGR 252
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + R +I+ N TL L+R
Sbjct: 253 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIMATNRPDTLDPALLR 302
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + +G+ + + + +VKL D F G +
Sbjct: 303 PGRLDRKIEIPLPNEQGRLEILKIHAAGVNKGGEIDFDAVVKLSDGFNGADL 354
>gi|375097417|ref|ZP_09743682.1| AAA+ family ATPase [Saccharomonospora marina XMU15]
gi|374658150|gb|EHR52983.1| AAA+ family ATPase [Saccharomonospora marina XMU15]
Length = 744
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MSS D ++ G LD+ D + + + V+ + +F L V P + I+G G
Sbjct: 469 MSSSDTLATGGLSLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGPPG 527
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 528 NGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIFLD 583
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G + V +++V A L + + E R +++ +
Sbjct: 584 EVDALAPRRGQSADSGVADRVVAALLTEL-------------DGVEPVRDVVVLGATNRP 630
Query: 288 TLYAP-LIRDGRMEKFYW 304
L P L+R GR+E+ +
Sbjct: 631 ELVDPALLRPGRLERLVY 648
>gi|358058571|dbj|GAA95534.1| hypothetical protein E5Q_02189 [Mixia osmundae IAM 14324]
Length = 432
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + MG+N + + + + GE ++L+R+ + A K+ +
Sbjct: 214 LYGPPGTGKTLLAKAVASTMGVNFLKVVSSAIVDKYIGESSRLVREMFAYA----KEHEP 269
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 270 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKVIM 319
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + I + + ++ + + +VKL +
Sbjct: 320 ATNRPDTLDPALLRPGRLDRKIEIPLPNEIARTEIIKIHAQNVQKSGEIDYDPVVKLSEG 379
Query: 336 FPGQSI 341
F G +
Sbjct: 380 FNGADL 385
>gi|433638161|ref|YP_007283921.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
gi|433289965|gb|AGB15788.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
Length = 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V K I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 243 AVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|384567624|ref|ZP_10014728.1| AAA+ family ATPase [Saccharomonospora glauca K62]
gi|384523478|gb|EIF00674.1| AAA+ family ATPase [Saccharomonospora glauca K62]
Length = 748
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + + + V+ + +F L + P + ++G G
Sbjct: 474 MSTTDTLATGGITLDDVGDMAEVKQSLTEAVLWPLRYPDSFARL-GIAPPRGVLLYGPPG 532
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 533 NGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPALIFLD 588
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 589 EVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATNRP 635
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 636 ELVDPALLRPGRLERLIYVP 655
>gi|339234579|ref|XP_003378844.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
Length = 452
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLECNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 234
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKIIM 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D I + + I + + E +VKL D
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIIKIHAKPITKKGIIDFESVVKLSDG 344
Query: 336 FPGQSI 341
F G +
Sbjct: 345 FSGADL 350
>gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
Length = 428
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|224105337|ref|XP_002313775.1| predicted protein [Populus trichocarpa]
gi|222850183|gb|EEE87730.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 328
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 329 AVVKLAEGFNGADL 342
>gi|195442534|ref|XP_002069009.1| GK12331 [Drosophila willistoni]
gi|194165094|gb|EDW79995.1| GK12331 [Drosophila willistoni]
Length = 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ +N + + + + GE A+ IR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + ++ E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKLEIPLPNETARMDILKIHAAPLAKEGDIDYEAIVKLSDR 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|224080385|ref|XP_002306121.1| predicted protein [Populus trichocarpa]
gi|222849085|gb|EEE86632.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 432
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 315
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N TL L+R GR+++ P
Sbjct: 316 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 345
>gi|357467393|ref|XP_003603981.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
gi|355493029|gb|AES74232.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
Length = 402
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE ++LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYAR 232
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V II+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 279 LGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 338
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|366989615|ref|XP_003674575.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
gi|342300439|emb|CCC68199.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
Length = 426
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 201 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 259
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 260 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 309
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N TL L+R GR+++ P
Sbjct: 310 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 339
>gi|448305307|ref|ZP_21495239.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589154|gb|ELY43390.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|393221022|gb|EJD06507.1| ribosome biogenesis ATPase RIX7 [Fomitiporia mediterranea MF3/22]
Length = 773
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + G N I + EL + GE + +RQ + A
Sbjct: 495 ISAPCGVLLWGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGESERAVRQVFARA- 553
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + + +MVN L +L G+ +E
Sbjct: 554 ---RASSPCVIFFDELDALVPRRDDSLSES-SARMVNTLL---------TELDGL---DE 597
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT 321
V +I N L + R GR++K + PT ++R+ + + RT
Sbjct: 598 RRGVHVIGATNRPDMLDPAMCRPGRLDKLLYVDLPTADERVEITRTVSRT 647
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++G+ I +SA + SG +GE K +R + EA
Sbjct: 155 VQPPRGVLLHGPPGCGKTLLANAIAGELGVPFISVSAPSIVSGMSGESEKTLRDTFEEA- 213
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
KK C LFI+++DA + + Q + ++V A + D+ + +++ +
Sbjct: 214 ---KKNAPCLLFIDEIDAITPKR-ESAQREMERRIV-AQFLTCMDDMS-------WDKTD 261
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRME 300
N V +I N +L A L R GR +
Sbjct: 262 NKPVIVIGATNRPDSLDAALRRAGRFD 288
>gi|339896797|ref|XP_003392195.1| putative 26S protease regulatory subunit [Leishmania infantum
JPCM5]
gi|398009636|ref|XP_003858017.1| 26S protease regulatory subunit, putative [Leishmania donovani]
gi|321398878|emb|CBZ08327.1| putative 26S protease regulatory subunit [Leishmania infantum
JPCM5]
gi|322496221|emb|CBZ31293.1| 26S protease regulatory subunit, putative [Leishmania donovani]
Length = 396
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 334
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDILRIHSAKITKKGDIDFESVVKLSE 342
Query: 335 TFPGQSI 341
F G +
Sbjct: 343 GFNGADL 349
>gi|118486132|gb|ABK94909.1| unknown [Populus trichocarpa]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|448306329|ref|ZP_21496237.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
gi|445598388|gb|ELY52447.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|148907029|gb|ABR16658.1| unknown [Picea sitchensis]
Length = 398
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V +GI + ++ E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
Length = 434
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
Length = 402
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ + P +V + K L ++G G GK+
Sbjct: 151 LAEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 198
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 199 AVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCVIFMDEIDAIGGR 254
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V II+ N TL L+R
Sbjct: 255 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIMATNRPDTLDPALLR 304
Query: 296 DGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R D + + + I + V E +VKL D F G +
Sbjct: 305 PGRLDRKIEIPLPNEQARLDIVKIHATPITKHGEVDWEAVVKLSDGFNGADL 356
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + G + ++S + +AGE +++R+ + EA+
Sbjct: 45 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERILREAFSEAS 104
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ GK +FI+++DA R + V TLM+ ++ PT
Sbjct: 105 SHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMD-SNKPTF----------S 153
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 331
P V ++ + N + L R GR E P +DR + T +P + ++
Sbjct: 154 TPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQILK--LYTKMIPLDPVLD 211
Query: 332 L 332
L
Sbjct: 212 L 212
>gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKEDIVKLVDT 335
N L L+R GR+++ P R D + + S T + E IVKL DT
Sbjct: 278 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQARLDIMKIHSRPLATHGEIDYEAIVKLSDT 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|443475164|ref|ZP_21065122.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443020015|gb|ELS34024.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 549
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 209
LPN + L+LGI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPRGVLLLGI---QGTGKSL-CAKAIANLWRLPLLRLDVGRLFGSLVGQSES----RT 311
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
R+ + + C L+I+++D G + + + +Q V TL+ +
Sbjct: 312 RQTIQLAEALAPCILWIDEIDKAFGGIANSVGDSGTSQRVLGTLLT-------------W 358
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVC---SGIFRTDNV 324
QE++ V ++ T N+ L L+R GR ++ ++ PT E+R + FR +
Sbjct: 359 MQEKSSPVFVVATANNIHALPPELLRKGRFDELFFINLPTYEERKEIFLLHLKRFRPTEL 418
Query: 325 PKEDIVKLV---DTFPGQSID 342
P DI ++ F G I+
Sbjct: 419 PSFDIERMAAISKEFSGAEIE 439
>gi|428780056|ref|YP_007171842.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428694335|gb|AFZ50485.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 610
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 134 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193
P +++K+ + TK L + G G GK+ + + +G+N I + E+
Sbjct: 109 PQWLEKLGLDATKGVL------------LVGPPGTGKTLTAKALAQSLGVNYIALVGSEI 156
Query: 194 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVN 250
S GE +R + +AA K C LFI++LD A ++ G + V Q
Sbjct: 157 MSKYYGEAEARMRGMFEKAA----KNAPCILFIDELDTIAPDRAKVEGEVEKRVVGQ--- 209
Query: 251 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTR 308
L+++ D TN P V I+ N + L L R GR ++ + P R
Sbjct: 210 --LLSLMDGFTN-----------TPGVVILGATNRPNHLDPALRRPGRFDREVVFGVPDR 256
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
DR + + T +P E+ V L D ++ F GA
Sbjct: 257 GDRAAILRVL--TAKMPLEETVDL-DEIASLAVGFVGA 291
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K P + +WG G GK+ + + ++ G N I + EL + G + +R+ + +A
Sbjct: 389 KAPRGVLLWGEPGTGKTLLAKALASQAGANFISIKGAELLNRWVGASEEAVREVFSKARQ 448
Query: 215 IIKKGKMCCLFINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C LFI+++D A G V++++V L I GM + E
Sbjct: 449 VAP----CVLFIDEIDTLAPARGSYQGDSGVSDRVVGQLLTEI---------DGMVDGGE 495
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRME 300
+ ++ N + L L+R GR +
Sbjct: 496 ---LLVVAATNRYQALDPALLRSGRFD 519
>gi|195442532|ref|XP_002069008.1| GK12330 [Drosophila willistoni]
gi|194165093|gb|EDW79994.1| GK12330 [Drosophila willistoni]
Length = 408
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 157 LSEQIRELREVIELPLLNPELFVRVGISPPKGCL------------LYGPPGTGKTLLAR 204
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
+ +++ +N + + + + GE A+ IR+ + A D + C +F++++DA GR
Sbjct: 205 AIASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQPCIIFMDEIDAIGGR 260
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + G +V II+ N TL L+R
Sbjct: 261 R--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIMATNRPDTLDPALLR 310
Query: 296 DGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R D + + + + + + E IVKL D F G +
Sbjct: 311 PGRLDRKLEIPLPNEMARMDILKIHAAPLVKKGEIDYEAIVKLSDQFNGADL 362
>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV + +
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMTM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36]
gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36]
Length = 429
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 204 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 262
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 263 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 311
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
+ II+ N TL L+R GR+++
Sbjct: 312 --QTKIIMATNRPDTLDPALLRAGRLDR 337
>gi|254412421|ref|ZP_05026195.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180731|gb|EDX75721.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 532
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 267 IPNPKGILLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 323
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ I C L+I+++D G +G G + ++ V TL+ +
Sbjct: 324 ISEAIAP----CVLWIDEIDKAFGNIGAGVDGDSGTSRRVFGTLIT-------------W 366
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 367 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAER 410
>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|387592229|gb|EIJ87253.1| ATPase [Nematocida parisii ERTm3]
gi|387597428|gb|EIJ95048.1| ATPase [Nematocida parisii ERTm1]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V P + ++G G GK+ V A + N + + + + GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
RV +I+ N L L+R GR+++ P
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIP 302
>gi|346472533|gb|AEO36111.1| hypothetical protein [Amblyomma maculatum]
Length = 361
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ + P +V + K L ++G G GK+
Sbjct: 110 LAEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 157
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 158 AVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCVIFMDEIDAIGGR 213
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V II+ N TL L+R
Sbjct: 214 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIMATNRPDTLDPALLR 263
Query: 296 DGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P R D + + + I + V E +VKL D F G +
Sbjct: 264 PGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDGFNGADL 315
>gi|336477840|ref|YP_004616981.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335931221|gb|AEH61762.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 740
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V + N I + ++ S GE K IR+ +++A
Sbjct: 494 IKPPKGILLFGPPGTGKTLIAQAVANESNANFISIKGPQMLSKWVGESEKAIREMFKKAR 553
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ C +F +++D+ A G TT+ V ++VN L +L G+ +
Sbjct: 554 QV----SPCIIFFDEIDSIAAVRGATTEGGKVAERVVNQLL---------TELDGLETLK 600
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIV 330
E + +I N + L+R GR ++ AP R RI + N+P ED V
Sbjct: 601 E---IVVIAATNRPDIMDPALLRAGRFDRMVLVGAPNRSGRINIFK--IHAKNIPLEDDV 655
Query: 331 KL 332
L
Sbjct: 656 NL 657
>gi|448444786|ref|ZP_21590012.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
gi|445685754|gb|ELZ38100.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|433602302|ref|YP_007034671.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
gi|407880155|emb|CCH27798.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
Length = 745
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D + G LD+ D + A + + + +F L V P L ++G G
Sbjct: 469 MSTSDTLRTGGLTLDDVGDMTEVKQALTEAALWPLQYPDSFARL-GVAPPRGLLLYGPPG 527
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + + EL GE + +R+ +R AA+ +F++
Sbjct: 528 CGKTFLVRALAGSGRLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVFLD 583
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V +++V A L + + E R +++ +
Sbjct: 584 EVDALAPRRGQSSDSGVGDRVVAALLTEL-------------DGVEPLRDVVVLGATNRP 630
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 631 ELIDPALLRPGRLERLVYVP 650
>gi|401414449|ref|XP_003871722.1| putative 26S protease regulatory subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487941|emb|CBZ23187.1| putative 26S protease regulatory subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 396
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 334
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNESGRLDILRIHSAKITKKGDIDFESVVKLSE 342
Query: 335 TFPGQSI 341
F G +
Sbjct: 343 GFNGADL 349
>gi|448476346|ref|ZP_21603510.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
gi|445815895|gb|EMA65814.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
Length = 405
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|449469945|ref|XP_004152679.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|383830124|ref|ZP_09985213.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
gi|383462777|gb|EID54867.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
Length = 747
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 25/228 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ D + + + V+ + +F L V P + I+G G
Sbjct: 473 MSTTDTLATGGLTLDDVGDMADVKQSLTEAVLWPLRYPDSFARL-GVAPPRGVLIYGPPG 531
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R+AA+ +F++
Sbjct: 532 NGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAPSLIFLD 587
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA R G ++ ++++V A L + + E R ++V +
Sbjct: 588 EVDALVPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATNRP 634
Query: 288 TLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKL 332
L P L+R GR+E+ + P E R + R N P D V L
Sbjct: 635 ELVDPALLRPGRLERLIYVPPPDAEARAQILRASAR--NTPLADDVDL 680
>gi|409730008|ref|ZP_11271619.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448722313|ref|ZP_21704851.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445790024|gb|EMA40697.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 405
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + + +FI+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 327
V II N + L ++R GR ++ P RE + + G+ D+V E
Sbjct: 288 RGDVSIIAATNRYDMLDRAILRPGRFDRLIEVPKPDIEGREQIFAIHTRGMNLADDVDFE 347
Query: 328 DIVKLVDTFPGQSIDFF----GALRARVYDDEVRKWISEVGIERI 368
+ ++ + F G I+ G R EVR E E++
Sbjct: 348 ALAEMAEEFSGAEIESLTTEAGMFAIRDERTEVRMADFEEAFEKV 392
>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
Length = 403
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 336 FPGQSI 341
F G +
Sbjct: 352 FNGADL 357
>gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni]
gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni]
Length = 397
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P E R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEEARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis]
gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis]
Length = 393
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 231
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 281
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLAKQGEIDYEAVVKLSDM 341
Query: 336 FPGQSI 341
F G +
Sbjct: 342 FNGADL 347
>gi|448457064|ref|ZP_21595638.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
gi|445811151|gb|EMA61161.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
Length = 405
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|426196558|gb|EKV46486.1| 26S proteasome regulatory complex ATPase RPT4 [Agaricus bisporus
var. bisporus H97]
Length = 399
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|354545862|emb|CCE42591.1| hypothetical protein CPAR2_202340 [Candida parapsilosis]
Length = 434
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO]
Length = 374
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|449515756|ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|345872617|ref|ZP_08824548.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343918280|gb|EGV29046.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 504
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V ++G+ + + G L GE K +R+ E AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRLGVPLLRLDFGALYDKYIGETEKNLRKAL-ETADLMS 323
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C L+I++++ G G+ V +++ L +A E RV
Sbjct: 324 P---CVLWIDEIEKGIA--TGSEDEGVGRRVLGTLLTWMA--------------ERKSRV 364
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYW 304
+ T ND S L LIR GR+++ ++
Sbjct: 365 FLAATANDISRLPPELIRKGRIDELFF 391
>gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis]
Length = 388
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 111 SSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
SS +S+ +R L ++ + P +V + K L ++G G GK
Sbjct: 132 SSIGGLSEQIRELREVIELPLLNPELFLRVGITPPKGCL------------LYGPPGTGK 179
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
+ V +++ N + + + + GE A+LIR+ + A D + C +F++++D
Sbjct: 180 TLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIFMDEID 235
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
A GR ++ T ++ + TLM + + G +V +I+ N TL
Sbjct: 236 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QVKMIMATNRPDTLD 285
Query: 291 APLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
L+R GR+++ P + R+ + + I + + E +VKL D F G +
Sbjct: 286 PALLRPGRLDRKIRIDLPNEQGRMDILKIHAAPITKHGEIDYEAVVKLSDQFNGADL 342
>gi|225458173|ref|XP_002281107.1| PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis
vinifera]
gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera]
gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|452823572|gb|EME30581.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 699
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
+H + F L + P + ++G G GK+ + + + G N I + EL + GE
Sbjct: 443 IHHPERFEAL-GLSRPAGVLLYGPPGCGKTLLAKAIARESGANFISIKGPELLNKYVGES 501
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
+ +R+ ++ + C +F ++LDA A R GG YT + +++ ++
Sbjct: 502 ERAVRRVFQRG----RASAPCIIFFDELDALAPRRGGFASYTDSESFGSSS--GASERVV 555
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
N L + E +V +I N + ++R GR++K + P
Sbjct: 556 NQLLTELDGVEARSQVFVIAATNRPDMIDPAMLRPGRLDKLLFVP 600
>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
Length = 826
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 547 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 605
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T + ++++VN L +L G+
Sbjct: 606 ---RASVPCVIFFDELDALVPRRDSTLSES-SSRVVNTLL---------TELDGL----- 647
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P E+++ + + RT+ P
Sbjct: 648 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDILKTLVRTNGTPMSSD 707
Query: 330 VKL 332
V L
Sbjct: 708 VDL 710
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + + +SA + SG +GE K IR + EA
Sbjct: 223 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEAR 282
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F +++DA + G Q + ++V A L+ D N E+
Sbjct: 283 SLAP----CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDE---------LNMEK 328
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 328
P+IV G N +L A L R GR ++ P R+ + + + + E D
Sbjct: 329 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNELSRVHILKKLAQNLKIDGEID 388
Query: 329 IVKLVDTFPGQSIDFFGA 346
+KL PG F GA
Sbjct: 389 FIKLAKLTPG----FVGA 402
>gi|154331635|ref|XP_001561635.1| putative 26S protease regulatory subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058954|emb|CAM36781.1| putative 26S protease regulatory subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 396
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +FI+++DA G+ R+ G++ +++ + TLM + + G +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLNQMDGFDTLG--------KVKVI 282
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 334
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDILRIHSAKIAKQGDIDFESVVKLSE 342
Query: 335 TFPGQSI 341
F G +
Sbjct: 343 GFNGADL 349
>gi|448467063|ref|ZP_21599341.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
gi|445812995|gb|EMA62979.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
Length = 404
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 243 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDPAILRPGRFDRLIEVP 317
>gi|365762926|gb|EHN04458.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 379
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|307151949|ref|YP_003887333.1| AAA ATPase [Cyanothece sp. PCC 7822]
gi|306982177|gb|ADN14058.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7822]
Length = 504
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 47/235 (20%)
Query: 123 LDNTLDGLYI-APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 181
LDN D L AF D+ + LP+ + L++GI +G GKS + +
Sbjct: 233 LDNLKDWLLRRGGAFSDRARAY------GLPHPRGLLLVGI---QGTGKSLTAKAISHHW 283
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM----- 236
+ + + G L G GE R R+ ++ + C L+I+++D +
Sbjct: 284 HLPLLRLDVGRLFGGLVGES----ESRTRQMINLAEALAPCVLWIDEIDKAFAGVDGKGD 339
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTT V T +N + E+ V ++ T N+ + L ++R
Sbjct: 340 GGTTS------RVFGTFIN-------------WLAEKKSPVFVVATANNIAALPPEMLRK 380
Query: 297 GRMEKFYWA--PTREDRIGVCS---GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
GR ++ ++ PT+E+R+ + S R N+ + DI +L P DF GA
Sbjct: 381 GRFDEIFFVGLPTQEERVAIFSVHLSRLRPHNLKQYDINRLAYETP----DFSGA 431
>gi|448525868|ref|XP_003869223.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis Co
90-125]
gi|380353576|emb|CCG23087.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis]
Length = 435
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 210 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 268
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 269 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 317
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II+ N TL L+R GR+++ P
Sbjct: 318 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 348
>gi|225428386|ref|XP_002283544.1| PREDICTED: 26S protease regulatory subunit S10B homolog B isoform 1
[Vitis vinifera]
gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
12286]
Length = 740
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP---- 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LD+ A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPGRGGETGSNVSERVVNQLL---------TELDGLEEMEE---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------KEDIVKLV 333
N + LIR GR ++ P E R + TD+ P ++ ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRLVMVGEPGIEGREQILK--IHTDDTPLSPDVSLRELAEMT 662
Query: 334 DTFPGQSIDFFG---ALRARVYDDE 355
D + G ++ G A+ A DD+
Sbjct: 663 DGYVGSDLESIGREAAIEALREDDD 687
>gi|409081325|gb|EKM81684.1| hypothetical protein AGABI1DRAFT_111952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 399
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|222478623|ref|YP_002564860.1| proteasome-activating nucleotidase [Halorubrum lacusprofundi ATCC
49239]
gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
49239]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|347965832|ref|XP_321726.5| AGAP001407-PA [Anopheles gambiae str. PEST]
gi|333470333|gb|EAA01092.5| AGAP001407-PA [Anopheles gambiae str. PEST]
Length = 392
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|356510074|ref|XP_003523765.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
gi|356518571|ref|XP_003527952.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi]
Length = 392
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
Length = 840
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A G T V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTTEGERVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 325
N L L+R GR ++ P ++R T N+P
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 733
>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
Length = 864
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K P +L ++G G GK+ + + N I + EL + GE + +RQ + A
Sbjct: 605 KPPGVL-LYGPPGCGKTLLAKALANSCNANFISIKGPELMNKFVGESERAVRQLFTRA-- 661
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
K C +F ++LDA R G + V+ ++VN L V+L G + EE
Sbjct: 662 --KTSSPCVVFFDELDALCPRRGDASSSRVSERIVNQLL---------VELDGFDSGEE- 709
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304
++ +I N + ++R GR+EK +
Sbjct: 710 -KIFVIGATNRIDIIDPAMLRPGRLEKLVY 738
>gi|429190866|ref|YP_007176544.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|448327130|ref|ZP_21516466.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
gi|429135084|gb|AFZ72095.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|445609063|gb|ELY62875.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
Length = 400
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDT 335
IVKL +
Sbjct: 336 AIVKLAEV 343
>gi|156363865|ref|XP_001626260.1| predicted protein [Nematostella vectensis]
gi|156213130|gb|EDO34160.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LFGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HEP 229
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 279
Query: 282 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIALPNEQARMDILKIHSSRITKHGEIDYEAVVKLSDG 339
Query: 336 FPGQSI 341
F G +
Sbjct: 340 FNGADL 345
>gi|396460518|ref|XP_003834871.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
Length = 729
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 499 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQLFMRAR 558
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F +++DA R T + + ++VN L +L G+
Sbjct: 559 SSVP----CVIFFDEIDALVPRR-STELHEASARVVNTLL---------TELDGL----- 599
Query: 274 NPR--VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320
NPR + +I N + ++R GR+E + P E+R+G+ + +
Sbjct: 600 NPRQGIYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVGILKALIQ 650
>gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|448288429|ref|ZP_21479628.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|445569580|gb|ELY24152.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
Length = 703
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + G+N I ++ EL GE + +R+ + A ++
Sbjct: 491 LYGPPGTGKTLLARAIAGESGVNFIHVNGPELLDRYVGESEESVREMFERA----RQTAP 546
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F++++DA AG+ G + + V+ ++V+ L +L G+ ENP + ++
Sbjct: 547 SIVFLDEIDAVAGQRGESNE--VSERVVSQLL---------TELDGIT---ENPNLVVLA 592
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N TL L+R GR E+ P
Sbjct: 593 ATNRRETLDDALLRPGRFEQHVEVP 617
>gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
Length = 743
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K F ++ ++ P + ++G G GK+ V + N I + EL S GE K +
Sbjct: 487 KKFKDM-GIRPPKGIVLYGPPGTGKTLLARAVAGESEANFINIRGPELLSKWVGESEKAV 545
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNV 263
R+ +R+A + +F ++LDA A GG + V+ ++VN L
Sbjct: 546 RETFRKARQV----SPSIIFFDELDALAPARGGGGEDGSRVSERVVNQIL---------T 592
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT 321
+L G+ E V +I N + L+R GR ++ + AP++E RIG+ T
Sbjct: 593 ELDGLVELEG---VVVIGASNRPDIIDPALLRPGRFDRLVYVGAPSKEGRIGILK--IHT 647
Query: 322 DNVP 325
N+P
Sbjct: 648 RNMP 651
>gi|302389778|ref|YP_003825599.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
gi|302200406|gb|ADL07976.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
Length = 495
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 146 KNFLNLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 203
KN+ + + + + GI G G GK+ + + + I S E AG A+
Sbjct: 83 KNYDEVKQMGIRPLRGILLTGAPGTGKTLLAKAASSYIDSAFISASGSEFIEMYAGVGAQ 142
Query: 204 LIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
+RQ ++ A D+ +K K C +FI++++ AG G T + +Q +N L
Sbjct: 143 RVRQLFKTARDLARKNSKKHCVIFIDEIEVIAGVRGKNTSHMEYDQTLNQLL-------- 194
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 319
V++ G+ ++++ + +I N L ++R GR ++ P +E R +
Sbjct: 195 -VEMDGLSAKDDDVNILVIGATNRPDILDPAIMRPGRFDRIVKVDLPDKEGRYQILK--L 251
Query: 320 RTDNVPKEDIVKLVDTFPGQSIDFFGA 346
T + P D V L + ++ F GA
Sbjct: 252 HTKDKPLADDVNL-EQIARETFGFSGA 277
>gi|403216832|emb|CCK71328.1| hypothetical protein KNAG_0G02720 [Kazachstania naganishii CBS
8797]
Length = 444
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 327
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 326
II+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 328 ---TKIIMATNRPDTLDPALLRPGRLDRKIEINLPNEAGRLEIFK--IHTANVKKHGEFD 382
Query: 327 -EDIVKLVDTFPGQSI 341
+ VK+ D F G I
Sbjct: 383 FDAAVKMSDGFNGADI 398
>gi|448102530|ref|XP_004199824.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359381246|emb|CCE81705.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKAPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 248
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P R+ + + I + E
Sbjct: 298 --QTKVIMATNRPDTLDPALMRAGRLDRKIEIALPNETGRLDIFKIHTAKIAKKGEFDFE 355
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 356 AAVKMSDGFNGADI 369
>gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans]
gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans CBS 6340]
Length = 433
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 266
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 267 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 316
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
II+ N TL L+R GR+++
Sbjct: 317 ---TKIIMATNRPDTLDPALLRPGRLDR 341
>gi|358335648|dbj|GAA54299.1| 26S proteasome regulatory subunit T4, partial [Clonorchis sinensis]
Length = 595
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 378 LYGPPGTGKTLLARAVASQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 433
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 434 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 483
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + S I + + E +VKL D
Sbjct: 484 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDIMKIHSAPIAKHGEIDWEAVVKLSDG 543
Query: 336 FPGQSI 341
F G +
Sbjct: 544 FNGADL 549
>gi|449469943|ref|XP_004152678.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
gi|449515750|ref|XP_004164911.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
chabaudi]
Length = 295
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 76 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 131
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 132 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 181
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 182 ATNRPDTLDSALVRPGRIDR 201
>gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster]
Length = 406
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 189 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 244
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 245 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 294
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 354
Query: 336 FPGQSI 341
F G +
Sbjct: 355 FNGADL 360
>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
Length = 395
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAMPITKHGEIDYEAIVKLSDG 343
Query: 336 FPGQSI 341
F G +
Sbjct: 344 FNGADL 349
>gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 427
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 202 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 260
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 261 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 309
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 326
+ +I+ N TL L+R GR+++ P R+ V T V K
Sbjct: 310 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEVFK--IHTAKVAKQGEFD 365
Query: 327 -EDIVKLVDTFPGQSI 341
E VK+ D F G I
Sbjct: 366 FEAAVKMSDGFNGADI 381
>gi|353242842|emb|CCA74450.1| probable RPT4-26S proteasome regulatory subunit [Piriformospora
indica DSM 11827]
Length = 389
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASTLQTNFLKVVSSAIVDKYIGESARLIREMFGYA----REHEP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKLIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHARSVNKSGDIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
gi|229585220|ref|YP_002843722.1| AAA ATPase [Sulfolobus islandicus M.16.27]
gi|238620179|ref|YP_002915005.1| ATPase AAA [Sulfolobus islandicus M.16.4]
gi|385773657|ref|YP_005646223.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385776292|ref|YP_005648860.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 759
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 327
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 328 DIVKLVDTFPGQSIDFFG------ALRARVYD 353
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
ANKA]
gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
Length = 420
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 306
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis]
gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis]
Length = 399
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 182 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 237
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 238 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 287
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 288 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLSKQGEIDYEAVVKLSDM 347
Query: 336 FPGQSI 341
F G +
Sbjct: 348 FNGADL 353
>gi|356551904|ref|XP_003544312.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
isoform 1 [Glycine max]
Length = 399
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|395504310|ref|XP_003756498.1| PREDICTED: 26S protease regulatory subunit 10B [Sarcophilus
harrisii]
Length = 387
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 166 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225
+G GK+ V +++ N + + + + GE A+LIR+ + A D + C +F
Sbjct: 174 EGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIF 229
Query: 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 285
++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+ N
Sbjct: 230 MDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNR 279
Query: 286 FSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQ 339
TL L+R GR+++ R D + + +G I + + E IVKL D F G
Sbjct: 280 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGA 339
Query: 340 SI 341
+
Sbjct: 340 DL 341
>gi|297839427|ref|XP_002887595.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
gi|297333436|gb|EFH63854.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK+P + ++G G GK+ + + + + + + L S G+ + L+R+ +R A
Sbjct: 134 VKLPKGVLLYGPPGTGKTLLARAIASNIDSTFMTVVSSALLSKYLGDSSLLVREMFRYAR 193
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR G+++ V + L+ + QL G E
Sbjct: 194 D----HQPCIIFMDEIDA-IGRRRGSSEGEVKTSECDRVLIELLS-----QLDGF---NE 240
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR++K P + R+ + SGI + ++ +
Sbjct: 241 LDKVKVIMATNRPDVLDPALLRPGRIDKKIEIPLPNGDSRMRILKIHASGITKHGDIDYD 300
Query: 328 DIVKLVDTFPG 338
+VKL + F G
Sbjct: 301 KVVKLSEGFNG 311
>gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi]
gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi]
Length = 397
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|448098649|ref|XP_004198973.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359380395|emb|CCE82636.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 248
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P R+ V + I + E
Sbjct: 298 --QTKVIMATNRPDTLDPALMRAGRLDRKIEIALPNEAGRLDVFKIHTAKIAKKGEFDFE 355
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 356 AAVKMSDGFNGADI 369
>gi|333910254|ref|YP_004483987.1| ATPase AAA [Methanotorris igneus Kol 5]
gi|333750843|gb|AEF95922.1| AAA family ATPase, CDC48 subfamily [Methanotorris igneus Kol 5]
Length = 732
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA----RQTAP 546
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++D+ A R G V ++VN L +L G+ EE V +I
Sbjct: 547 CIIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EEPKDVVVIA 594
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 332
N L L+R GR+++ P + + + T +P D V L
Sbjct: 595 ATNRPDILDPALLRPGRLDRIVLVPAPDKKARLAIFKVHTRKMPLADDVDL 645
>gi|440493762|gb|ELQ76191.1| 26S proteasome regulatory complex, ATPase RPT4 [Trachipleistophora
hominis]
Length = 324
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + A M ++ + + A L GE +++IR+ ++ A ++
Sbjct: 107 LYGPPGTGKTLLARAIAATMDVSFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 162
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +FI+++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 163 CIIFIDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFKSLD---KVKVIM 212
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 310
N L L+R GR+++ P D
Sbjct: 213 ATNRPDILDPALLRPGRLDRKIEIPLPND 241
>gi|442753613|gb|JAA68966.1| Putative 26s proteasome regulatory complex atpase rpt4 [Ixodes
ricinus]
Length = 404
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V ++ N + + + + GE A+LIR+ + A D +
Sbjct: 187 LYGPPGTGKTLLARAVATQIDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 243 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 293 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 352
Query: 336 FPGQSI 341
F G +
Sbjct: 353 FNGADL 358
>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
Length = 448
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 223 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 282
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 283 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 328
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVP----KE 327
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 329 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINYN 388
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 384
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 389 NICKLCDGFNGADMRNICTEAGINAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 447
>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|46397658|sp|O74445.2|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>gi|341583068|ref|YP_004763560.1| cell division protein CDC48 [Thermococcus sp. 4557]
gi|340810726|gb|AEK73883.1| cell division protein CDC48 [Thermococcus sp. 4557]
Length = 795
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAP 610
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R G + V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRRGTDVNH-VTDRLINQLLTE------------MDGIQENSGVVVIA 657
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 332
N + L+R GR ++ P +++ + T NVP + V+L
Sbjct: 658 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVRL 708
>gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c
[Komagataella pastoris CBS 7435]
Length = 818
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 48/313 (15%)
Query: 37 SLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTL 96
++K++ S +SQ++ K F + + Y+EEKQ + + I+D +++T + L
Sbjct: 418 AIKRIFSTLSQEQ--EKKF-IEAMYEEEKQ--DEDTMDIDEGITDKTRELTHLSTIQKFL 472
Query: 97 FQAPME-SGTHYAVMS-SYDYISQGLRHLDNTL--DGLYIAPAFMDKVVVHITKNFLNL- 151
+ P + A +S +Y+ L + T +G P K V ++K + L
Sbjct: 473 LKHPHPLTEEQLAPLSITYEDFITALPTIQPTAKREGFATVPDVTWKSVGALSKTRVELH 532
Query: 152 ----PNVKVPLI---LGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196
+K P I +GI WG G GK+ + V + N I + EL +
Sbjct: 533 MAIVQPIKRPEIYEKVGITAPAGVLMWGPPGCGKTLLAKAVANESKANFISIKGPELLNK 592
Query: 197 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
GE K IRQ + A I C +F ++LDA R + + ++++VN L
Sbjct: 593 YVGESEKAIRQVFSRARASIP----CVIFFDELDALVPRRDASLSES-SSRVVNTLL--- 644
Query: 257 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 312
+L G+ N R I V G N + ++R GR++K + PT ++R+
Sbjct: 645 ------TELDGL-----NDRKGIFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTADERL 693
Query: 313 GVCSGIFRTDNVP 325
+ + R + P
Sbjct: 694 EIMKTVIRVNGTP 706
>gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila
melanogaster]
Length = 390
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 228
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 229 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 278
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 279 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 338
Query: 336 FPGQSI 341
F G +
Sbjct: 339 FNGADL 344
>gi|268323248|emb|CBH36836.1| conserved hypothetical protein, AAA ATPase family and CDC48 family
[uncultured archaeon]
Length = 739
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
+ +L N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGVLLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
+ +R+A K+ C +F++++D+ A V ++V+ L
Sbjct: 544 EIFRKA----KQSAPCIIFLDEIDSIAPIRSAGLDSHVTERVVSQILTE----------- 588
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD-- 322
M EE V II N + L+R GR+++ + +PT+E R IF+
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAR----EAIFKVHLA 643
Query: 323 ------NVPKEDIVKLVDTFPGQSI 341
+V E++ K+ + + G I
Sbjct: 644 GKPLGADVSIEELAKMTEGYVGADI 668
>gi|227830675|ref|YP_002832455.1| AAA ATPase [Sulfolobus islandicus L.S.2.15]
gi|229579582|ref|YP_002837981.1| AAA ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284998202|ref|YP_003419969.1| ATPase AAA [Sulfolobus islandicus L.D.8.5]
gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.G.57.14]
gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
Length = 759
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 327
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 328 DIVKLVDTFPGQSIDFFG------ALRARVYD 353
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|386763913|ref|NP_572308.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
gi|383293243|gb|AAF46146.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae]
gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba]
gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|116788974|gb|ABK25069.1| unknown [Picea sitchensis]
Length = 398
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|229581753|ref|YP_002840152.1| AAA ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.N.15.51]
Length = 759
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 327
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 328 DIVKLVDTFPGQSIDFFG------ALRARVYD 353
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta]
gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|167520500|ref|XP_001744589.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776920|gb|EDQ90538.1| predicted protein [Monosiga brevicollis MX1]
Length = 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 32/237 (13%)
Query: 111 SSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
SS +SQ LR L ++ P ++ + K L ++G G GK
Sbjct: 132 SSVGGLSQQLRELREVIELPLKNPELFIRIGIKPPKGCL------------LYGPPGTGK 179
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
+ V + + N + + + + GE A+LIR+ + A D + C +F++++D
Sbjct: 180 TLLARAVASNVDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HEPCIIFMDEID 235
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
A GR ++ T ++ + TLM + + + G +V +I+ N TL
Sbjct: 236 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------KVKMIMATNRPDTLD 285
Query: 291 APLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
L+R GR+++ P + R+ + I + ++ E +VKL D F G +
Sbjct: 286 PALMRPGRLDRKIEIGLPNEQARLDILKIHAQPIAKAGDIDYEAVVKLSDGFNGADL 342
>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|385804649|ref|YP_005841049.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|109626808|emb|CAJ53276.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
gi|339730141|emb|CCC41459.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 742
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LD+ A GG T V+ ++VN L +L G+ EEN V ++
Sbjct: 557 TVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EENGNVMVVA 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + LIR GR ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRL 625
>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
Length = 390
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 228
Query: 222 CCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
C +F++++DA +GG ++ T ++ + TLM + + Q+ G RV +
Sbjct: 229 CIIFMDEIDA----IGGPRFSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKM 276
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLV 333
I+ N TL L+R GR+++ P + R+ + I + + E IVKL
Sbjct: 277 IMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLS 336
Query: 334 DTFPGQSI 341
D F G +
Sbjct: 337 DGFNGADL 344
>gi|228991900|ref|ZP_04151836.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
gi|228998014|ref|ZP_04157615.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|229005571|ref|ZP_04163281.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228755671|gb|EEM05006.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228761747|gb|EEM10692.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|228767629|gb|EEM16256.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
Length = 318
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S GE K + + + EA ++
Sbjct: 75 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 130
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 131 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 175
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 176 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKTELQLDLV 233
Query: 330 VKLVDTFPGQSIDFF 344
K + F G + +
Sbjct: 234 AKYAEHFSGADLTYL 248
>gi|448373709|ref|ZP_21557738.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
gi|445661424|gb|ELZ14209.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
Length = 690
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 467 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 526
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
++ +FI+++DA GR G + + V ++V+ L +L GM
Sbjct: 527 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 568
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
ENP + ++ N L L+R GR++ P
Sbjct: 569 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 602
>gi|356564312|ref|XP_003550399.1| PREDICTED: proteasome-activating nucleotidase-like [Glycine max]
Length = 833
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 604 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 663
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 664 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 709
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 710 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 769
Query: 328 DIVKLVDTFPGQSI 341
+VKL + F G +
Sbjct: 770 AVVKLAEGFNGADL 783
>gi|414076388|ref|YP_006995706.1| AAA ATPase [Anabaena sp. 90]
gi|413969804|gb|AFW93893.1| AAA ATPase [Anabaena sp. 90]
Length = 529
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE IRQ +
Sbjct: 264 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDVGRLFGGIVGESENRIRQMIQ 320
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A I C L+++++D G + GT + ++ V TL+ +
Sbjct: 321 LAEAI----SPCVLWMDEIDKAFGNINSGTDGDSGTSRRVFGTLIT-------------W 363
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V ++ T N+ L A L+R GR ++ ++ PT ++R
Sbjct: 364 MQEKTSPVFMVATANNVQILPAELLRKGRFDEIFFLNLPTEKER 407
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + G + +S + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 314
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis]
gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis]
Length = 397
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|402855921|ref|XP_003892557.1| PREDICTED: 26S protease regulatory subunit 10B-like [Papio anubis]
Length = 418
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ + + + + + GE A+LI RE + + +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCSFLKVVSSSIVDKYIGESARLI----REMCNYARDHQP 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 306
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQVRLDTLKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 336 FPGQSI 341
F G +
Sbjct: 367 FNGADL 372
>gi|300867943|ref|ZP_07112583.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
gi|300334080|emb|CBN57761.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
Length = 527
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + M G+L G GE IRQ
Sbjct: 282 IPNPKGVLLVGI---QGSGKSLAAKSIAHEWHLPLLRMDTGKLFGGIVGESESRIRQMI- 337
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMY 269
E A+ I C L+I+ +D G + T+ + ++ V ++L+N +
Sbjct: 338 ELAEAIAP---CVLWIDQIDLAFGNINSATERDSGTSRRVFSSLIN-------------W 381
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304
QE+ V I+ T N+ L L+R G+ ++ ++
Sbjct: 382 MQEKTSSVFIVATANNVRMLPIELLRKGKFDEIFF 416
>gi|229173917|ref|ZP_04301455.1| AAA ATPase central domain protein [Bacillus cereus MM3]
gi|228609555|gb|EEK66839.1| AAA ATPase central domain protein [Bacillus cereus MM3]
Length = 331
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 88 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 143
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 144 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 188
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 189 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 246
Query: 330 VKLVDTFPGQSIDFF 344
K D F G + +
Sbjct: 247 SKYADHFSGADLTYL 261
>gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis]
gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis]
Length = 397
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALTIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|389860481|ref|YP_006362720.1| AAA ATPase [Thermogladius cellulolyticus 1633]
gi|388525384|gb|AFK50582.1| AAA family ATPase, CDC48 subfamily [Thermogladius cellulolyticus
1633]
Length = 739
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 35/245 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K +R+ +R A +
Sbjct: 502 LYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAVREVFRRARQVAP---- 557
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++D+ A G V +++VN L +L G+ +V +I
Sbjct: 558 CVVFFDEIDSIAPARGARYDSGVTDRIVNQLL---------TELDGIQPLR---KVVVIA 605
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 335
N L L+R GR ++ + P + + + T VP E++ +L +
Sbjct: 606 ATNRPDILDPALLRPGRFDRLVYVPPPDYKARLEIFKVHTRRVPLASDVNLEELARLTEG 665
Query: 336 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE--QPKMTLDKLL 393
+ G I VR+ + ER+ R V K E +P +T +++
Sbjct: 666 YTGADIAAV-----------VREAVMLALRERLEARPVEMKYFLKALEVVKPSLTKEQIE 714
Query: 394 EYGRM 398
EY R+
Sbjct: 715 EYERL 719
>gi|345004569|ref|YP_004807422.1| proteasome-activating nucleotidase [halophilic archaeon DL31]
gi|344320195|gb|AEN05049.1| Proteasome-activating nucleotidase [halophilic archaeon DL31]
Length = 404
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V A+ + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LHGPPGTGKTLLAKAVAAETNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARDNEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDEAILRPGRFDRLIEVP 317
>gi|297742735|emb|CBI35369.3| unnamed protein product [Vitis vinifera]
Length = 3499
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + G + +S + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 314
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|340383794|ref|XP_003390401.1| PREDICTED: 26S protease regulatory subunit 10B-like [Amphimedon
queenslandica]
Length = 401
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 111 SSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
SS +S+ +R L ++ + P ++V + K L ++G G GK
Sbjct: 145 SSVGGLSEQIRELREVIELPLMNPELFERVGIKAPKGCL------------LYGPPGTGK 192
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
+ V ++ N + + + + GE A+LIR+ + A D + C +F++++D
Sbjct: 193 TLLARAVAKQLDANFLKVVSSAIVDKYIGESARLIREMFAYAKD----HQPCIIFMDEID 248
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
A G+ ++ T ++ + TLM + + Q+ G + +V +I+ N L
Sbjct: 249 AIGGKR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDVLD 298
Query: 291 APLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
L+R GR+++ P R D + + S I + V E +VKL + F G +
Sbjct: 299 PALLRPGRLDRKIEIPLPNEQARLDILKIHASPITKMGEVDYEAVVKLSEDFNGADL 355
>gi|229085940|ref|ZP_04218164.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
gi|228697376|gb|EEL50137.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
Length = 311
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S GE K + + + EA ++
Sbjct: 68 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 123
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 124 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 168
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 169 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKAELQLDMV 226
Query: 330 VKLVDTFPGQSIDFF 344
K + F G + +
Sbjct: 227 AKYAEHFSGADLTYL 241
>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
Length = 323
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 109 LYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 164
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 165 CIIFMDEIDALGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 214
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 215 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 274
Query: 336 FPGQSI 341
F G +
Sbjct: 275 FNGADL 280
>gi|390600180|gb|EIN09575.1| 26S proteasome regulatory complex ATPase RPT4 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 448
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 21/200 (10%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
FL + +K P + ++G G GK+ V A + N + + + + GE A+++R+
Sbjct: 170 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVRE 228
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A D + C +F++++DA GR ++ T ++ + TLM + + Q+ G
Sbjct: 229 MFGYARD----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDG 277
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRT 321
+ RV +I+ N TL L+R GR+++ P + R+ + + + ++
Sbjct: 278 F---DSLGRVKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKS 334
Query: 322 DNVPKEDIVKLVDTFPGQSI 341
+ E IVKL D F G +
Sbjct: 335 GEIDYEAIVKLSDGFNGADL 354
>gi|433638558|ref|YP_007284318.1| AAA+ family ATPase [Halovivax ruber XH-70]
gi|433290362|gb|AGB16185.1| AAA+ family ATPase [Halovivax ruber XH-70]
Length = 727
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 504 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 563
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
++ +FI+++DA GR G + + V ++V+ L +L GM
Sbjct: 564 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 605
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
ENP + ++ N L L+R GR++ P
Sbjct: 606 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 639
>gi|156547510|ref|XP_001603936.1| PREDICTED: 26S protease regulatory subunit 10B [Nasonia
vitripennis]
Length = 393
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 142 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 189
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 190 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 245
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 246 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 295
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + I + + E +VKL D F G +
Sbjct: 296 PGRLDRKIEIPLPNEQARLEILKIHANPIAKHGEIDYEAVVKLSDGFNGADL 347
>gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
Length = 392
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIREMFGYAKD----HQP 230
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DRLGKVKMIM 280
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ R D + + SG + + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIQIDLPNEQARMDILKIHSGPMTKHGEIDYEAIVKLSDG 340
Query: 336 FPGQSI 341
F G +
Sbjct: 341 FNGADL 346
>gi|159903815|ref|YP_001551159.1| ATPase AAA [Prochlorococcus marinus str. MIT 9211]
gi|159888991|gb|ABX09205.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9211]
Length = 492
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 35/202 (17%)
Query: 153 NVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
N +PL G+ G +G GKS + + + + + G L +G G R+ R
Sbjct: 254 NFGLPLPRGVLLIGPQGTGKSLTAKAIAHSWSMPLLRLDVGRLFAGLVGASEARTRETIR 313
Query: 211 EAADIIKKGKMCCLFINDLDAGAG----RMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
A + C L+I+++D G G GGT+Q + N +
Sbjct: 314 RAEAMAP----CVLWIDEIDKGFGGDARSDGGTSQRVLANVLT----------------- 352
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIF---RT 321
+ E+ V ++ T N L L+R GR ++ + PT ++R+ + + R
Sbjct: 353 --WMAEKTSAVFVVATANGVDRLPGELLRKGRFDEIFLLDLPTTQERLSILNLHLNQRRP 410
Query: 322 D-NVPKEDIVKLVDTFPGQSID 342
D +P + IV D F G ++
Sbjct: 411 DLEIPLQSIVSRTDGFSGAELE 432
>gi|388858178|emb|CCF48246.1| probable RPT4-26S proteasome regulatory subunit [Ustilago hordei]
Length = 408
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKIIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans]
gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans CBS 6340]
Length = 819
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 553 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFSRA- 611
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASVPCVIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 653
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVP 325
N R I V G N + A ++R GR++K F P E+++ + + RT+ P
Sbjct: 654 NDRRGIFVIGATNRPDMIDAAMLRPGRLDKTLFIELPNFEEKLDIIKTLARTNGTP 709
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 34/225 (15%)
Query: 137 MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186
MD VV + + + LP V+ P + + G G GK+ + ++ + I
Sbjct: 207 MDDVVAQLME-LIGLPILHPEIFASTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFI 265
Query: 187 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 246
+SA + SG +GE K IR + EA + C +F +++DA + G Q +
Sbjct: 266 SISAPSVVSGMSGESEKKIRDLFEEAKSLAP----CLVFFDEIDAITPKRDGGAQREMER 321
Query: 247 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW 304
++V A L+ D + + G P+I+ G N +L A L R GR ++
Sbjct: 322 RIV-AQLLTSMDELSFEKTGGK---------PVIIIGATNRPDSLDAALRRAGRFDREIC 371
Query: 305 --APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGA 346
P R+ + + T + D +KL PG F GA
Sbjct: 372 LNVPNEISRLHILKKMSSTLKIDGSIDFLKLAKLTPG----FVGA 412
>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
Length = 752
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 511 LYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 566
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LD+ A GG T V+ ++VN L +L G+ EEN V ++
Sbjct: 567 TVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EENGNVMVVA 614
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + LIR GR ++
Sbjct: 615 ATNRPDMIDPALIRSGRFDRL 635
>gi|367009390|ref|XP_003679196.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
gi|359746853|emb|CCE89985.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
Length = 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V A +G N I A + GE A++IR+ + A K+ +
Sbjct: 218 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 273
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 274 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 323
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N TL L+R GR+++ P
Sbjct: 324 ATNRPDTLDPALLRPGRLDRKIEIP 348
>gi|383856518|ref|XP_003703755.1| PREDICTED: 26S protease regulatory subunit 10B-like [Megachile
rotundata]
Length = 393
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 142 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 189
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 190 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 245
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 246 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 295
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + I + + E +VKL D F G +
Sbjct: 296 PGRLDRKIEIPLPNEQARLEILKIHAAPISKHGEIDYEAVVKLSDGFNGADL 347
>gi|88807547|ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
Length = 499
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 156 VPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+PL G+ G +G GKS + + + + G L SG G R
Sbjct: 258 LPLPRGVLLVGPQGTGKSLTARAIAHSWSMPLLRLDVGRLFSGLVGASEARTR------- 310
Query: 214 DIIKKGKM---CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
D+I + + C L+I+++D G G++GG+ T +Q V AT++ +
Sbjct: 311 DMILRAEAMAPCVLWIDEIDKGFGQVGGSDGGT--SQRVLATVLT-------------WM 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD----NV 324
E+ V ++ T N L L+R GR ++ + P+R++R G+ + + ++
Sbjct: 356 AEKRSAVFVVATANGVERLPPELLRKGRFDEIFLLDLPSRDERCGILTLHLQRRRPQLDL 415
Query: 325 PKEDIVKLVDTFPGQSID 342
P +V +++ G ++
Sbjct: 416 PLSTVVDRTESYSGAELE 433
>gi|344232542|gb|EGV64421.1| 26S proteasome subunit P45 [Candida tenuis ATCC 10573]
gi|344232543|gb|EGV64422.1| hypothetical protein CANTEDRAFT_114256 [Candida tenuis ATCC 10573]
Length = 414
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 189 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 247
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 248 ---REHSPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 296
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 326
+ +I+ N TL L+R GR+++ P R+ + T N+ K
Sbjct: 297 --QTKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEAGRLEIFK--IHTANIAKHGEFD 352
Query: 327 -EDIVKLVDTFPGQSI 341
E V++ D F G I
Sbjct: 353 FEAAVRMSDGFNGADI 368
>gi|385804130|ref|YP_005840530.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|339729622|emb|CCC40894.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 765
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P ++G G GK+ + + IN + ++ EL GE K +R+ + A
Sbjct: 521 NTDPPTGALLYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA 580
Query: 213 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
++ +F +++DA A R GG T V +++V+ L + D T+
Sbjct: 581 ----RQAAPAIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD--------- 626
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNV 324
+P + ++ N T+ + L+R GR+E P R D R + +G DN+
Sbjct: 627 --HPNLVVLAATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNI 683
Query: 325 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVR 357
++++V G++ + GA + A V D VR
Sbjct: 684 DRDELV-------GKTAGYVGADIEAMVRDASVR 710
>gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 405
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARQHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|169235453|ref|YP_001688653.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
gi|167726519|emb|CAP13304.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
Length = 406
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
N F L ++R GR ++ P +G IFR
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 329
>gi|322368342|ref|ZP_08042911.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320552358|gb|EFW94003.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 407
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + AA + +
Sbjct: 190 LHGPPGTGKTMLAKAVANRTDATFIKMAGSELVQKFIGEGAKLVRDLFSLAA----EREP 245
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R T T + V T+M + L M E+ + II
Sbjct: 246 AVIFIDEIDAVASRR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGNIRIIA 295
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L + ++R GR ++ P
Sbjct: 296 ATNRFDMLDSAILRPGRFDRLIEVP 320
>gi|448349621|ref|ZP_21538453.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|448365819|ref|ZP_21554073.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
gi|445639414|gb|ELY92525.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|445654428|gb|ELZ07279.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
Length = 405
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii 17XNL]
gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
yoelii]
Length = 475
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 231 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 286
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 287 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 336
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 337 ATNRPDTLDSALVRPGRIDR 356
>gi|307109493|gb|EFN57731.1| hypothetical protein CHLNCDRAFT_56078 [Chlorella variabilis]
Length = 399
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 111 SSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 170
SS +S+ +R L ++ I P +V +K P + ++G G GK
Sbjct: 136 SSIGGLSEQIRELREAVELPLINPELFARV------------GIKPPTGVLLYGPPGTGK 183
Query: 171 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230
+ + + + + N + + A + GE A++IR+ + A ++ + C +F++++D
Sbjct: 184 TLLAKAIASNIEANFLKVVASGVVDKYIGESARVIREMFGYA----REHQPCIIFMDEID 239
Query: 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290
A G+ ++ T ++ V TLM + QL G E+ +V ++ N L
Sbjct: 240 AIGGKR--FSEGTSADREVQRTLMELLS-----QLDGF---EKLGKVKLVAATNRPDVLD 289
Query: 291 APLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
L+R GR+++ P + R+ + S I + ++ E +VKL D F G +
Sbjct: 290 PALMRPGRLDRKIEIPLPNEQARMEILKIHASKITKHGDIDYEAVVKLGDNFNGADL 346
>gi|21362836|sp|Q9HRW6.2|PAN1_HALSA RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
Length = 407
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
N F L ++R GR ++ P +G IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>gi|15789738|ref|NP_279562.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
gi|10580114|gb|AAG19042.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
[Halobacterium sp. NRC-1]
Length = 368
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 149 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 204
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 205 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 254
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
N F L ++R GR ++ P +G IFR
Sbjct: 255 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 291
>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + + + A + GE A++IR+ + A
Sbjct: 196 IKAPKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFAR 255
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
D + C +F++++DA +GG+ ++ T ++ + TLM + + Q+ G
Sbjct: 256 D----HEPCVIFMDEIDA----IGGSRFSEGTSADREIQRTLMELLN-----QMDGF--- 299
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVP 325
EE +V +++ N L L+R GR+++ P R+ + SGI + ++
Sbjct: 300 EEQGQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNESQRLEILKIHASGITKRGDID 359
Query: 326 KEDIVKLVDTFPG 338
E +VKL D G
Sbjct: 360 FESVVKLADGLNG 372
>gi|386001528|ref|YP_005919827.1| proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
gi|357209584|gb|AET64204.1| Proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
Length = 406
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + + EL GE A+++R+ + ++ +
Sbjct: 184 LYGPPGTGKTLLAKAVASSTEATFLRVVGSELVQKYIGEGARMVRELF----ELAQNKAP 239
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F+++LDA G+ RM G T ++ V TLM + L M + V +I
Sbjct: 240 AIIFVDELDAIGSRRMDGATS---GDREVQRTLMQL--------LAEMDGFDPRGEVKLI 288
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV-PKEDIVKLVDTFP 337
N L L+R GR ++ + P+RE R + S + N+ P D+ ++ D
Sbjct: 289 AATNRLDMLDPALLRPGRFDRLIYVPLPSRESRYSILSIHTASMNLHPDVDLRRIADGAE 348
Query: 338 GQS 340
G S
Sbjct: 349 GAS 351
>gi|363749395|ref|XP_003644915.1| hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888548|gb|AET38098.1| Hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
Length = 427
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V A +G N I A + GE A++IR+ + A K+ +
Sbjct: 210 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 265
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 266 CIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 315
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R+ + + + +T E VK+ D
Sbjct: 316 ATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFKIHTAKVKKTGEFDFEATVKMSDG 375
Query: 336 FPGQSI 341
F G I
Sbjct: 376 FNGADI 381
>gi|451337453|ref|ZP_21907997.1| Cell division protein FtsH [Amycolatopsis azurea DSM 43854]
gi|449419922|gb|EMD25439.1| Cell division protein FtsH [Amycolatopsis azurea DSM 43854]
Length = 759
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ + + + + + V+ + +F L V P + ++G G
Sbjct: 484 MSTSDNLATGGLTLDDVGNMIDVKQSLTEAVLWPLRYPDSFARL-GVDPPRGVLLYGPPG 542
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 543 GGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIFLD 598
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V++++V A L +L G+ E +++ +
Sbjct: 599 EIDALAPRRGQSSDSGVSDRVVAALL---------TELDGVEPMREV----VVLGATNRP 645
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 646 ELVDPALLRPGRLERRVYVP 665
>gi|381159205|ref|ZP_09868438.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
gi|380880563|gb|EIC22654.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
Length = 490
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 29/212 (13%)
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 211
PN + P + + G +G GKS + V + G+ + + G L + GE + +R+ +
Sbjct: 258 PNAERPRGIMLLGVQGGGKSLAAKAVAGRFGVPLLRLDFGALYNKYIGETERNLRESLKT 317
Query: 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
A + C L++++++ G GG++ +++ L +A+ V L
Sbjct: 318 AEVMAP----CVLWLDEIEKGLA--GGSSDEGTGQRIIGTLLTWMAERKAAVFL------ 365
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCSGIFRTDNV 324
+ T ND L L+R GR ++ ++ A R + RI + D+
Sbjct: 366 --------VATSNDIKQLPPELVRKGRFDEIFFVDLPDAEVRREIFRIHLAKRNLNPDDF 417
Query: 325 PKEDIVKLVDTFPGQSID--FFGALRARVYDD 354
+ + L D F G I+ AL A DD
Sbjct: 418 DLDQLAALSDGFSGAGIEQAVVSALYAARADD 449
>gi|229060841|ref|ZP_04198196.1| AAA ATPase central domain protein [Bacillus cereus AH603]
gi|228718488|gb|EEL70120.1| AAA ATPase central domain protein [Bacillus cereus AH603]
Length = 308
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 68 LLFYGPPGCGKTFLARAVAGEIHANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 123
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 124 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 168
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F P +E+R+ + +T + P+ + +
Sbjct: 169 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNKEERLTILE--LKTKDKPRMELQLDFV 226
Query: 330 VKLVDTFPGQSIDFF 344
K + F G + +
Sbjct: 227 SKYAEHFSGADLTYL 241
>gi|448590085|ref|ZP_21650144.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445735200|gb|ELZ86753.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 405
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCSGIFR-----TDNVPKEDIVKLVDT 335
N F L ++R GR ++ P ED + I +D+V E++ +L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFKIHTRKMNVSDDVDFEELAELAEN 353
Query: 336 FPGQSI 341
G I
Sbjct: 354 ASGADI 359
>gi|378725904|gb|EHY52363.1| 26S protease subunit rpt4 [Exophiala dermatitidis NIH/UT8656]
Length = 393
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ N+ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGNIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|71987372|ref|NP_001022114.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
gi|373218667|emb|CCD62358.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
Length = 398
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 147 LAEQIRELREVVELPLINPELFKRVGITPPKGCL------------LFGPPGTGKTLLAR 194
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 195 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 250
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 251 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 300
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 301 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 360
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 361 MFAIRAEREFVIDEDFMKAVRKVG 384
>gi|354611822|ref|ZP_09029778.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
gi|353196642|gb|EHB62144.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
Length = 405
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V A+ I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVAAQTDATFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
Length = 854
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GKS +++ A+ +N + + + E+ S G+ + IRQ + A +
Sbjct: 617 LYGPSGCGKSLLAKVLAARANVNFVSIKSSEIMSKYFGDSEQAIRQVFARA----RSASP 672
Query: 222 CCLFINDLDAGAGRMGGTTQY-----------TVNNQMVNATLMNIADNPTNVQLPGMYN 270
LF ++ DA A + G Q +V N+++ +T +N D + + G
Sbjct: 673 SILFFDEFDAVACKRFGEAQTKGSDAAAFDGSSVYNRIL-STFLNEMDGIGHAKRSGYQA 731
Query: 271 Q--EENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR--TDNV 324
Q E +V +I N L LIR GR++K F P +DR I R T +
Sbjct: 732 QKTENRKQVLVIAATNRVDALDQALIRPGRIDKKVFLHYPDLQDR----KAILRLCTARM 787
Query: 325 PKEDIVKL 332
P +D V L
Sbjct: 788 PLKDDVDL 795
>gi|390961725|ref|YP_006425559.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
gi|390520033|gb|AFL95765.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
Length = 795
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
FL L + P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 542 FLGL-GITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIRE 600
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 601 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 643
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
M +EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 644 MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 703
Query: 328 DIVKL 332
+ VKL
Sbjct: 704 EDVKL 708
>gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus]
Length = 389
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 138 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 185
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 186 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 241
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 242 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 291
Query: 296 DGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + I + + E +VKL D F G +
Sbjct: 292 PGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDGFNGADL 343
>gi|385680830|ref|ZP_10054758.1| ATPase [Amycolatopsis sp. ATCC 39116]
Length = 745
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G L++ D + + + V+ + +F L + P + ++G G
Sbjct: 470 MSTSDSLATGGLTLEDVGDMTDVKQSLTEAVLWPLRYPDSFARL-GIAPPRGVLLYGPPG 528
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R+AAD +F++
Sbjct: 529 GGKTFLVRALAGTGALNVFAVKGAELLDKWVGESERAVRELFRKAAD----ASPSLVFLD 584
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G + V++++V A L + + E R +++ +
Sbjct: 585 EIDALAPRRGQSGDSGVSDRVVAALLTEL-------------DGVEPMRDVVVLGATNRP 631
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 632 ELVDPALLRPGRLERLVYVP 651
>gi|110668654|ref|YP_658465.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|109626401|emb|CAJ52861.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
Length = 765
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P ++G G GK+ + + IN + ++ EL GE K +R+ + A
Sbjct: 521 NTDPPTGALLYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA 580
Query: 213 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
++ +F +++DA A R GG T V +++V+ L + D T+
Sbjct: 581 ----RQAAPAIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD--------- 626
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNV 324
+P + ++ N T+ + L+R GR+E P R D R + +G DN+
Sbjct: 627 --HPNLVVLAATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNI 683
Query: 325 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVR 357
++++V G++ + GA + A V D VR
Sbjct: 684 DRDELV-------GKTAGYVGADIEAMVRDASVR 710
>gi|159116259|ref|XP_001708351.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
gi|157436462|gb|EDO80677.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
Length = 401
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 25/231 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GKS C+ + +GI+ I +L GE A+L+R + A
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYA- 227
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K K C L I+++DA A + + T N++ V+ L+ + ++ G +E
Sbjct: 228 ---KLKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQLL-----TEIDGFTGLDE 277
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGVCS-GIFRTDNVPKE 327
+ + I+ N L L+R GR +E PT R + + + S G+ ++V
Sbjct: 278 S--IKIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPTGRYEILKIHSKGLSLGEDVDFA 335
Query: 328 DIVKLVDTFPGQSIDF------FGALRARVYDDEVRKWISEVGIERIGKRL 372
IVK D F G + GALRA + ++ V + R K +
Sbjct: 336 GIVKSTDGFNGADLRNVITEAGLGALRAERGEIHQEDLLAAVAVIRSNKSI 386
>gi|448363225|ref|ZP_21551828.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
gi|445647194|gb|ELZ00174.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
Length = 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|71987364|ref|NP_001022113.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
gi|21264496|sp|O17071.2|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
AltName: Full=Proteasome regulatory particle ATPase-like
protein 4
gi|373218666|emb|CCD62357.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
Length = 406
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 155 LAEQIRELREVVELPLINPELFKRVGITPPKGCL------------LFGPPGTGKTLLAR 202
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 203 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 258
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 259 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 308
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 309 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 368
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 369 MFAIRAEREFVIDEDFMKAVRKVG 392
>gi|221060773|ref|XP_002261956.1| 26S proteasome regulatory subunit [Plasmodium knowlesi strain H]
gi|193811106|emb|CAQ41834.1| 26S proteasome regulatory subunit, putative [Plasmodium knowlesi
strain H]
Length = 393
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 328 DIVKLVDTFPGQSI 341
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|326676750|ref|XP_003200668.1| PREDICTED: peroxisome biogenesis factor 1-like [Danio rerio]
Length = 1237
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 28/222 (12%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F +LP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ-LP 266
++ A ++ K C LF ++ D+ A R G V +++VN L + V+ L
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDN-TGVTDRVVNQLLTQL----DGVEGLT 931
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDN 323
G+Y ++ + L P L+R GR++K + P R R+ + + T +
Sbjct: 932 GVY----------VLAASSRPDLIDPALLRPGRLDKSLYCPPPDRAARLEILRAL--THS 979
Query: 324 VPKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISEVG 364
VP V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 980 VPLAADVDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
gi|342306740|dbj|BAK54829.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 700
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
++P + ++G G GK+ V + G N I ++ EL S GE + IR+ +++A
Sbjct: 463 EIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGPELMSMWVGETERAIREVFKKA-- 520
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
++ +F +++DA A G V +++V+ L ++ G+ + E
Sbjct: 521 --RQSSPTIIFFDEIDAIAVARGADPN-KVTDRIVSQLL---------TEMDGISKRRE- 567
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 329
+V II N + L+R GR+EK + P + RI + S + +N P E+I
Sbjct: 568 -KVVIIAATNRPDIIDPALLRPGRLEKLIYVPPPDYQTRIALFSRLI--NNRPHEEI 621
>gi|448419856|ref|ZP_21580700.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
gi|445674770|gb|ELZ27307.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|399575289|ref|ZP_10769047.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
gi|399239557|gb|EJN60483.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
Length = 401
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGEIRIIA 289
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVP 314
>gi|448301595|ref|ZP_21491586.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
gi|445583511|gb|ELY37841.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator]
Length = 393
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 142 LSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPPGTGKTLLAR 189
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 190 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFMDEIDAIGGR 245
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + +V +I+ N TL L+R
Sbjct: 246 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRPDTLDPALLR 295
Query: 296 DGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + I + + E +VKL D F G +
Sbjct: 296 PGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDGFNGADL 347
>gi|389852490|ref|YP_006354724.1| cell division control protein 48, aaa family [Pyrococcus sp. ST04]
gi|388249796|gb|AFK22649.1| putative cell division control protein 48, aaa family [Pyrococcus
sp. ST04]
Length = 837
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + + N I + E+ S GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAIATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A G T V ++++N L M +EN V +I
Sbjct: 640 SIIFIDEIDAIAPARGTTEGERVTDRLINQLLTE------------MDGIQENSGVVVIA 687
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
N L L+R GR ++ P +++
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDEK 717
>gi|354567825|ref|ZP_08986992.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
gi|353541499|gb|EHC10966.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
Length = 504
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRAHNIK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|388258720|ref|ZP_10135895.1| putative ATPase [Cellvibrio sp. BR]
gi|387937479|gb|EIK44035.1| putative ATPase [Cellvibrio sp. BR]
Length = 493
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGALYNKFHGETER----NLREALKLAD 323
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C L++++++ G + G + Q + TL+ + E RV
Sbjct: 324 AMSPCVLWLDEIEKGMAQDGNDNGVS---QRLLGTLLT-------------WMAERRSRV 367
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVPKEDIVKL 332
I+ T ND S L LIR GR+++ ++ A R+D I R + + D+++L
Sbjct: 368 FIVATSNDISRLPPELIRKGRLDEIFFVDLPEAAVRQD-IFAIHLRKRGCDAQQFDLLRL 426
Query: 333 VDT---FPGQSID 342
D F G I+
Sbjct: 427 ADASDGFSGSEIE 439
>gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis]
gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis]
Length = 397
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEMDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|389586002|dbj|GAB68731.1| 26S proteasome regulatory subunit [Plasmodium cynomolgi strain B]
Length = 393
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 328 DIVKLVDTFPGQSI 341
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|448726013|ref|ZP_21708440.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797032|gb|EMA47516.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 403
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|448295487|ref|ZP_21485553.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|445583944|gb|ELY38270.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
Length = 403
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARSHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M E+ V II
Sbjct: 243 AVLFIDEIDAIASKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEVRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni]
gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni]
Length = 397
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|448359787|ref|ZP_21548436.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
gi|445641854|gb|ELY94926.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448739676|ref|ZP_21721688.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445799295|gb|EMA49676.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 403
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|378729074|gb|EHY55533.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 814
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 136 FMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
F D +V+ +T+ V+ P + I G G GK+ A++G+N I +SA +
Sbjct: 213 FEDLLVLPMTRPEIYTSSKVQPPRGVLIHGPPGCGKTMIANAFAAELGVNFISISAPSIV 272
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
SG +GE K +R + EA K+ C +FI+++DA
Sbjct: 273 SGMSGESEKALRDHFDEA----KRAAPCLIFIDEIDA 305
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + N I + EL + GE + +RQ + A +
Sbjct: 583 LWGPPGCGKTLLAKACANSSHANFISVKGPELLNKYVGESERAVRQVFNRARSSVP---- 638
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA R GT + ++VN L +L G+ N E + +I
Sbjct: 639 VIIFFDELDALVPRRDGTMS-EASARVVNTLL---------TELDGVGNSREG--IYVIA 686
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV 314
N + ++R GR+E F P E+R+ +
Sbjct: 687 ATNRPDIIDPAMLRPGRLETLLFVGLPNAEERVDI 721
>gi|398410121|ref|XP_003856514.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
gi|339476399|gb|EGP91490.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
Length = 690
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 137 MDKVVVHITKNFL-------NLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIM 187
MD ++ +T+ + + P+ GI G G GK+ C A++ + I
Sbjct: 130 MDTMIKQMTRQLVMPIGRAAKFHEARYPMPKGILLHGPPGCGKTMLCRAYAAELKVPFIE 189
Query: 188 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
+ + SG +GE K +R+++ EA K+ C LFI+++DA A + T+Q + +
Sbjct: 190 ILGPSIVSGMSGESEKAVREKFDEA----KRNAPCLLFIDEIDAIAPKR-DTSQSQMEKR 244
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGR 298
+V L++ M + +++P P+IV N +L L R GR
Sbjct: 245 IVAQLLVS------------MDDLQKDPSKPVIVLAATNRPDSLDPALRRGGR 285
>gi|336252474|ref|YP_004595581.1| AAA family ATPase [Halopiger xanaduensis SH-6]
gi|335336463|gb|AEH35702.1| AAA family ATPase, CDC48 subfamily [Halopiger xanaduensis SH-6]
Length = 743
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F ++LDA A GR GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVI 604
Query: 281 VTGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior]
Length = 393
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 107 YAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGK 166
+ S+ +S+ +R L ++ + P +V + K L ++G
Sbjct: 133 HVTYSAIGGLSEQIRELREVIELPLLNPELFQRVGITPPKGCL------------LYGPP 180
Query: 167 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFI 226
G GK+ V +++ N + + + + GE A+LIR+ + A D + C +F+
Sbjct: 181 GTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQPCIIFM 236
Query: 227 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286
+++DA GR ++ T ++ + TLM + + Q+ G + +V +I+ N
Sbjct: 237 DEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIMATNRP 286
Query: 287 STLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDTFPGQS 340
TL L+R GR+++ P + R+ + I + + E +VKL D F G
Sbjct: 287 DTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDGFNGAD 346
Query: 341 I 341
+
Sbjct: 347 L 347
>gi|336274034|ref|XP_003351771.1| hypothetical protein SMAC_00315 [Sordaria macrospora k-hell]
gi|380096051|emb|CCC06098.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 368
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 143 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 201
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 202 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 250
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 251 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 308
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 309 SVVKMSDGLNGADL 322
>gi|169849566|ref|XP_001831486.1| ATPase [Coprinopsis cinerea okayama7#130]
gi|116507438|gb|EAU90333.1| ATPase [Coprinopsis cinerea okayama7#130]
Length = 396
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 231 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 277
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 327
R +I+ N TL L+R GR+++ P R + + + +G + + + E
Sbjct: 278 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHTGPVNKNGEIDYE 337
Query: 328 DIVKLVDTFPGQSI 341
+VKL D F G +
Sbjct: 338 AVVKLSDGFNGADL 351
>gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii]
gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii]
Length = 375
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 203
I KNF + +P + ++G G GK+ + V K + I + E GE K
Sbjct: 149 INKNFYEKIGIDLPKGVMLFGPPGTGKTLVVKAVALKTKASFIKTAGSEFVQKYLGEGPK 208
Query: 204 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
++R ++ I +K +FI+++DA A R T ++ V LM + +
Sbjct: 209 MVRDLFK----IARKNSPSIVFIDEIDAIATRRFDAQ--TGADREVQRILMELLN----- 257
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---FYWAPTREDRIGVCSGIFR 320
Q+ G EEN V +I+ N TL L+R GR+++ F RE R IF+
Sbjct: 258 QMDGF---EENKNVRVIMATNRIDTLDPALLRPGRIDRKIGFPLPNRREKRF-----IFQ 309
Query: 321 T 321
T
Sbjct: 310 T 310
>gi|443316084|ref|ZP_21045544.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442784315|gb|ELR94195.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 508
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 123 LDNTLDGLYI-APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 181
LDN D L AF DK + LP+ + L++GI +G GKS + +
Sbjct: 233 LDNLKDWLLRRGQAFSDKARQY------GLPHPRGLLLVGI---QGTGKSLTAKAIAHHW 283
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 241
+ + + G L +G GE R R+ I + C L+I+++D + G
Sbjct: 284 HLPLLRLDVGRLFAGLVGESES----RTRQMIQISEALAPCILWIDEIDKAFAAVDGRGD 339
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
+N++ + +A E+ V ++ T N+ TL ++R GR ++
Sbjct: 340 GGTSNRVFGTFVTWLA--------------EKTSPVFVVATANNIQTLPPEMLRRGRFDE 385
Query: 302 FYWA--PTREDRIGVCS---GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
++ P++E+R + + R N+ D+ +L P DF GA
Sbjct: 386 IFFVGLPSQEERCAIFNVHLSRLRAHNLQSYDLPRLAYETP----DFSGA 431
>gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|448282489|ref|ZP_21473775.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|445576031|gb|ELY30490.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
Length = 405
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
Length = 416
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 249
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---REHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 298
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
+ +I+ N TL L+R GR+++
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDR 324
>gi|448355430|ref|ZP_21544182.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
gi|445635583|gb|ELY88751.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
Length = 405
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|427729404|ref|YP_007075641.1| AAA ATPase [Nostoc sp. PCC 7524]
gi|427365323|gb|AFY48044.1| AAA+ family ATPase [Nostoc sp. PCC 7524]
Length = 503
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 NYDIERLAYETP----DFSGA 431
>gi|449548337|gb|EMD39304.1| 26S proteasome regulatory complex ATPase RPT4 [Ceriporiopsis
subvermispora B]
Length = 399
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A + N + + + + GE A+++R+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYARD----HEP 238
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R II+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 288
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 348
Query: 336 FPGQSI 341
F G +
Sbjct: 349 FNGADL 354
>gi|443897510|dbj|GAC74850.1| 26S proteasome regulatory complex [Pseudozyma antarctica T-34]
Length = 408
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|291000420|ref|XP_002682777.1| cell division cycle protein 48 [Naegleria gruberi]
gi|284096405|gb|EFC50033.1| cell division cycle protein 48 [Naegleria gruberi]
Length = 776
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+VP + I+G G GKS + + N I + ++ S GE ++ I+Q + A
Sbjct: 543 VQVPKGMLIYGPNGVGKSTLAMCIARECKANFISVQCPDILSKVVGESSRAIKQLFVTA- 601
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE- 272
+ C LF + D+ A + + +++M++ L+ + + + + + E
Sbjct: 602 ---RNCAPCILFFDQFDSIARSRNDESGGSSSDKMLSTLLIEMDGVHQHYKKTSLADDEM 658
Query: 273 -ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 329
+N + I+ N L + ++R GR+++ + P E RI + + +T+ +P +D
Sbjct: 659 AQNDNIFILAATNRIDLLDSAVLRPGRIDQHIYLPLPDEESRIEIL--LLKTNGMPIKDS 716
Query: 330 VKLVDTFPGQSIDFFGA 346
+D ++ F GA
Sbjct: 717 ENCIDEMAKRTSGFSGA 733
>gi|15227690|ref|NP_178463.1| cell division control protein 48-B [Arabidopsis thaliana]
gi|28201774|sp|Q9ZPR1.1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
Short=AtCDC48b
gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
Length = 603
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K +FI+++D R + V TLM+ ++ P++
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 161
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 314
PRV ++ + N + L R GR + P EDR+ +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
>gi|448319916|ref|ZP_21509404.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
gi|445606322|gb|ELY60226.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
Length = 405
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|344338327|ref|ZP_08769259.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343801609|gb|EGV19551.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 534
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V + G+ + + G L GE K +R+ AD++
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGRFGVPLLRLDFGALYDKYIGETEKNLRKAL-ATADVMS 326
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C L+I++++ G G V +++ L +A E N RV
Sbjct: 327 P---CVLWIDEIEKGVA--TGAEDDGVGRRVLGTLLTWMA--------------ERNSRV 367
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYW 304
+ T ND S L LIR GR+++ ++
Sbjct: 368 FLTATANDISRLPPELIRKGRIDELFF 394
>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
Length = 398
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 147 LAEQIRELREVVELPLINPELFRRVGITPPKGCL------------LFGPPGTGKTLLAR 194
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 195 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 250
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 251 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 300
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 301 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 360
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 361 MFAIRAEREFVIDEDFMKAVRKVG 384
>gi|383864588|ref|XP_003707760.1| PREDICTED: peroxisome biogenesis factor 1-like [Megachile
rotundata]
Length = 1019
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 29/220 (13%)
Query: 118 QGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNV--KVPLILG----IWGGKGQGKS 171
+G H+ + + GL A + + +V I + L P V P+ L ++G G GK+
Sbjct: 723 KGTGHMWSDIGGL----AEVKRSLVEILQWPLKYPEVFKNAPIKLQNGVLLYGMPGTGKT 778
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
+ + + G+N I + EL S G + +R + A + K C LF ++ D+
Sbjct: 779 MLAKAIANECGVNLISVKGPELLSKYIGASEESVRNMFERAL----RAKPCVLFFDEFDS 834
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
A R G + V +++VN L Q+ G+ ++E V ++ + L +
Sbjct: 835 LAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVAASSRPDLLDS 881
Query: 292 PLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 329
L+R GR++K + P DR + + + + + ED+
Sbjct: 882 ALLRPGRLDKALYCPLPDEADREEILAVLCKAQKIDHEDL 921
>gi|343427180|emb|CBQ70708.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Sporisorium reilianum
SRZ2]
Length = 878
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKN 147
R KG++ L M + Y ++ G+ H + L P ++ H
Sbjct: 137 RPKGLISKL----MNTAEKYTPPATRLVDLGGISHAIEKILELIAMPLCHPEIYAHT--- 189
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR
Sbjct: 190 -----GVKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRD 244
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
+ EAA I C LFI+++DA + T Q + ++V L ++ D
Sbjct: 245 TFDEAASIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD 290
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 600 LWGPPGCGKTLLAKAVANESHANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 655
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F ++LDA R + + ++++VN L + + VQ Y +I
Sbjct: 656 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLESRVQ---TY---------VIA 702
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 332
N + + R GR++K + P ++R+ + I T P D V L
Sbjct: 703 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERLEILKTI--TSKTPLSDDVDL 753
>gi|336476337|ref|YP_004615478.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335929718|gb|AEH60259.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 744
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 21/196 (10%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N K P + ++G G GK+ + V ++ N I + EL S GE + +R+ +R+A
Sbjct: 479 NTKPPRGIMLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAVRETFRKA 538
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ +F +++D+ A R G ++ V+ ++V+ L +L G+ E
Sbjct: 539 ----KQSAPTVVFFDEVDSIAPRRGMSSDSHVSERVVSQIL---------TELDGV---E 582
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIV 330
E V I+ N + L+R GR ++ + +P ++ R + S P D V
Sbjct: 583 ELKDVVIVAATNRPDIVDPALLRPGRFDRLIYVRSPDKKSREKIFS--IHLKGKPLSDDV 640
Query: 331 KLVDTFPGQSIDFFGA 346
+ G + D+ GA
Sbjct: 641 D-ISELAGMTEDYVGA 655
>gi|212224263|ref|YP_002307499.1| CDC48/VCP [Thermococcus onnurineus NA1]
gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
Length = 797
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
FL L + P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 543 FLGL-GITPPKGILLYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIRE 601
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 602 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 644
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-K 326
M EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 645 MDGIAENSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 704
Query: 327 EDI 329
EDI
Sbjct: 705 EDI 707
>gi|254387365|ref|ZP_05002615.1| ATPase [Streptomyces sp. Mg1]
gi|194346160|gb|EDX27126.1| ATPase [Streptomyces sp. Mg1]
Length = 521
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
L +++ P + + G G GKS + + A+ + + G + GE R
Sbjct: 261 LRATDLRPPRGVLLVGVPGCGKSLSAKAIAAQWQLPLYRLDMGSIHGKYLGESEG----R 316
Query: 209 YREAADIIKKGKMCCLFINDLD---AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
+REA + + C L+I++++ AGAG G Q + +
Sbjct: 317 FREALETADRVAPCVLWIDEIEKGLAGAGDGTGVPQRIIGQFL----------------- 359
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFR 320
+ QE R ++ T ND +L L+R GR ++ ++ A RE+ IG+ +
Sbjct: 360 --FWLQESQSRSFVVATANDVRSLPPELLRKGRFDELFFVDLPDAQDREEIIGIYYRRYL 417
Query: 321 TDNVPKEDIVKLVDT---FPGQSID 342
+ E + +LVD F G I+
Sbjct: 418 KTDPDPEQLARLVDLSEGFAGSDIE 442
>gi|343425001|emb|CBQ68538.1| probable RPT4-26S proteasome regulatory subunit [Sporisorium
reilianum SRZ2]
Length = 408
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
Length = 795
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENTGVVVIA 657
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 325
N L L+R GR ++ P ++R T N+P
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 701
>gi|302530613|ref|ZP_07282955.1| cell division protein CDC48 [Streptomyces sp. AA4]
gi|302439508|gb|EFL11324.1| cell division protein CDC48 [Streptomyces sp. AA4]
Length = 814
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
+S+ D ++ G LD+ + + A + V+ + +F L ++ P + ++G G
Sbjct: 537 LSTSDNLATGGLTLDDVGNMTSVKEALTETVLWPLRYPDSFARL-GIEPPRGVLLYGPPG 595
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R +R AAD +F++
Sbjct: 596 GGKTFLVRALAGTGALNVFAIKGAELLDKWVGESERAVRDLFRRAAD----AAPSLIFLD 651
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V +++V A L +L G+ E +++ +
Sbjct: 652 EIDALAPRRGQSSDSGVADRVVAALL---------TELDGVEPMREV----VVLGATNRP 698
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 699 ELVDPALLRPGRLERRIYVP 718
>gi|435846218|ref|YP_007308468.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
gi|433672486|gb|AGB36678.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
Length = 405
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|307181554|gb|EFN69115.1| Peroxisome biogenesis factor 1 [Camponotus floridanus]
Length = 326
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F N P +K+ + ++G G GK+ + + + G+N I + EL S G + +R
Sbjct: 120 FKNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 178
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A ++ K C LF ++ D+ A R G + V +++VN L QL G
Sbjct: 179 VFERA----RRAKPCVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQLDG 224
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCSGIFRTDNVP 325
+ ++E V ++ + L L+R GR++K P + +R + + + + N+
Sbjct: 225 VEDREG---VAVVAASSRPDLLDPALLRPGRLDKCLHCPLPDMLEREAIFAVLCDSQNID 281
Query: 326 K-----EDIVKLVDTFPGQSID 342
K +++ +L D F G I+
Sbjct: 282 KAKLDLKELSQLSDGFTGADIN 303
>gi|171684681|ref|XP_001907282.1| hypothetical protein [Podospora anserina S mat+]
gi|170942301|emb|CAP67953.1| unnamed protein product [Podospora anserina S mat+]
Length = 390
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + A + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVASAIVDKYIGESARLIREMFGYA- 223
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 330
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|396081648|gb|AFN83263.1| 26S proteasome regulatory subunit 10 [Encephalitozoon romaleae
SJ-2008]
Length = 391
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
N V +I+ N L L+R GR+++ P
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIP 304
>gi|66359630|ref|XP_626993.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
gi|46228795|gb|EAK89665.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
Length = 406
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 181 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 240
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 241 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 286
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 287 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 346
Query: 328 DIVKLVDTFPG 338
I KL D F G
Sbjct: 347 AICKLCDGFNG 357
>gi|448734331|ref|ZP_21716557.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
gi|445800379|gb|EMA50734.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
Length = 404
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|341893757|gb|EGT49692.1| CBN-RPT-4 protein [Caenorhabditis brenneri]
Length = 398
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 147 LAEQIRELREVVELPLINPELFRRVGITPPKGCL------------LFGPPGTGKTLLAR 194
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 195 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 250
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 251 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 300
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 301 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 360
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 361 MFAIRAEREFVIDEDFMKAVRKVG 384
>gi|336121896|ref|YP_004576671.1| proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
gi|334856417|gb|AEH06893.1| Proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
Length = 408
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I + EL GE AKL++ ++ A K+
Sbjct: 188 LYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKDVFKLA----KEKAP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +FI+++DA A R T T ++ V TLM + L M E V II
Sbjct: 244 CIIFIDEIDAVASRR--TESLTGGDREVQRTLMQL--------LAEMDGFESKGDVKIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 338
N L ++R GR ++ AP+ E R+ + + N+ D+ K+ G
Sbjct: 294 ATNRPDILDPAILRPGRFDRIIEVPAPSEEGRLEILKIHTKNMNLKHVDLKKIAKMTEG 352
>gi|192361342|ref|YP_001983115.1| putative ATPase [Cellvibrio japonicus Ueda107]
gi|190687507|gb|ACE85185.1| probable ATPase [Cellvibrio japonicus Ueda107]
Length = 507
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 285 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGSLYNKYHGETER----NLREALKLAD 337
Query: 218 KGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
C L++++++ G G GG +Q + TL+ + E
Sbjct: 338 AMSPCVLWLDEIEKGMAQDGNDGGVSQRLL------GTLLT-------------WMAERT 378
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304
RV I+ T ND S L LIR GR+++ ++
Sbjct: 379 TRVFIVATSNDISRLPPELIRKGRLDEIFF 408
>gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum
tuberosum]
Length = 398
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPG 338
+KL + F G
Sbjct: 335 AAIKLAEGFNG 345
>gi|119179544|ref|XP_001241347.1| hypothetical protein CIMG_08510 [Coccidioides immitis RS]
gi|392866735|gb|EAS30090.2| AAA family ATPase [Coccidioides immitis RS]
Length = 749
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 47/315 (14%)
Query: 37 SLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQ----DRWAGLAYDISDDQQDI----TR 88
SL ++S + +Q R LS+S K + D+ + ++ + + + +I ++ + TR
Sbjct: 409 SLLQLSCRKAQTRQLSQSVKEEAGLDQNQAPAENPELEEPSRIPLEIREEDVALALQETR 468
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNF 148
M + + P + + I R+L ++ P M + V K
Sbjct: 469 PTAMREVFLETP---AVRWKDIGGQRDIK---RYLQKAVERPLRHPERMKRFNVSGKKGV 522
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
L ++G G K+ + + + G+N + + E+ S GE + +R+
Sbjct: 523 L------------LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREI 570
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
+R+A + + +F +++DA AGR G +Q +N V TL+N ++ G+
Sbjct: 571 FRKA----RAARPSIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI 615
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK 326
EE V ++ N TL L+R GR++ + P E R + F V
Sbjct: 616 ---EELKNVLVVAATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHD 672
Query: 327 E-DIVKLVDTFPGQS 340
E D + L G S
Sbjct: 673 EVDPIALASRTEGYS 687
>gi|339627940|ref|YP_004719583.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|379007573|ref|YP_005257024.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
gi|339285729|gb|AEJ39840.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|361053835|gb|AEW05352.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
Length = 488
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNN 246
S E AG A+ +RQ +R+A + K+ + +FI++++ AGR G + +
Sbjct: 130 SGSEFVEVYAGVGAQRVRQLFRDARSLAKREGRQSAIIFIDEIEVMAGRRGQHQSHLEYD 189
Query: 247 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 305
Q +N L V++ GM E+ R+ +I N L L+R GR ++
Sbjct: 190 QTLNQLL---------VEMDGMATH-EDVRILVIAATNRADLLDPALMRPGRFDRLVRVD 239
Query: 306 -PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 346
P RE R + + T N P D V L ++ F GA
Sbjct: 240 LPDREGREAILA--LHTQNKPMADDVDLA-VLARETYGFSGA 278
>gi|220909462|ref|YP_002484773.1| ATPase AAA [Cyanothece sp. PCC 7425]
gi|219866073|gb|ACL46412.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
Length = 537
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 144/353 (40%), Gaps = 72/353 (20%)
Query: 17 LKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLA 76
LK+ G +R LV + L S+ QR+L+K+ + DE
Sbjct: 176 LKLQGLAREQLVKACQGL--------SRTRIQRVLAKALAAKKQVDE------------- 214
Query: 77 YDISDDQQDITRGKGMVDTLFQAPMESGT--HYAVMSSYDYISQGLRHLDNTLDGLYIAP 134
DI+ G+++ QA ++G Y S + GL +L +
Sbjct: 215 TDIA----------GVLEAKKQAIRQTGILEFYTAQESLKSVG-GLENLKQWMR--MRQD 261
Query: 135 AFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
AF D+ +N+ +PN K L++GI +G GKS + + + + + + G L
Sbjct: 262 AFTDE-----ARNY-GIPNPKGVLLVGI---QGTGKSLSAKTISHEWRLPLLRLDTGRLF 312
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATL 253
G GE +RQ + A + C L+I+++D G + G + ++ V +L
Sbjct: 313 GGIVGESESRVRQMIQLAEAMAP----CVLWIDEIDKAFGNITSGADGDSGTSRRVFGSL 368
Query: 254 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---R 308
+ + QE+ V I+ T N+ L A L+R GR ++ ++ PT R
Sbjct: 369 IT-------------WMQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTESER 415
Query: 309 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
+D V R + + D+ L QS +F GA +V +D + + S
Sbjct: 416 QDIFRVHLQRLRPSRLREFDLSLLAR----QSQNFSGAEIEQVINDAMHQAFS 464
>gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|433423638|ref|ZP_20406268.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|448542666|ref|ZP_21624751.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|448549986|ref|ZP_21628591.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|448572170|ref|ZP_21640163.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|448596896|ref|ZP_21654034.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|432198308|gb|ELK54605.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|445706946|gb|ELZ58815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|445713034|gb|ELZ64815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|445720762|gb|ELZ72433.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|445740777|gb|ELZ92282.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|67603252|ref|XP_666536.1| 26S proteasome regulatory subunit [Cryptosporidium hominis TU502]
gi|54657551|gb|EAL36305.1| 26S proteasome regulatory subunit [Cryptosporidium hominis]
Length = 391
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 226 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKE 327
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 331
Query: 328 DIVKLVDTFPG 338
I KL D F G
Sbjct: 332 AICKLCDGFNG 342
>gi|334120952|ref|ZP_08495028.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
gi|333455671|gb|EGK84314.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
Length = 545
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + ++ + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A I C L+I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ P+ +R
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESER 425
>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
Length = 727
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADIIKKGK 220
++G G GK+ + V I ++ +L N+G+ +KL+RQ +RE I ++
Sbjct: 507 LYGEPGTGKTLLAKAVAHSTSATFIRVTGADLIQKNSGDGSKLVRQYSFRELFRIARESV 566
Query: 221 MCCLFINDLDAGAGRMGGTTQYTVN---NQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C +FI+++DA GT +Y + V T++ + + QL G E V
Sbjct: 567 PCIIFIDEIDA-----VGTKRYDTTCGGEREVQRTMLELLN-----QLDGF---ESRGDV 613
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+I+ N L LIR GR+++ P
Sbjct: 614 KVIMATNRIDVLDPALIRPGRIDRKIELP 642
>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Methanoregula boonei 6A8]
gi|166199290|sp|A7I8B8.1|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
Length = 436
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 321
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
Length = 429
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V G+ + M+ EL GE A+L+R + A D+ +K
Sbjct: 205 LYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVHKYIGEGAQLVRDLFEMARDLAEKNNG 264
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA G+ R T T + V TLM + ++ G +N N R I+
Sbjct: 265 VVVFIDEIDAVGSMR---TNDGTSGSAEVQRTLMQLL-----AEMDG-FNNRGNIR--IM 313
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAP 306
N L A L+R GR ++ P
Sbjct: 314 AATNRPDMLDAALLRPGRFDRLIKIP 339
>gi|448729351|ref|ZP_21711668.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
gi|445795298|gb|EMA45827.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
Length = 404
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|448292770|ref|ZP_21483091.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
gi|445571745|gb|ELY26288.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
Length = 435
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 218 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 273
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 274 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 323
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 324 ATNRFDMLDPAILRPGRFDRLIEVP 348
>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
Length = 878
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKN 147
R KG++ L M + Y ++ G+ H + L P ++ H
Sbjct: 128 RPKGLISKL----MNAAEKYTPPATRLADLGGISHAIEKILELIAMPLCHPEIYAHT--- 180
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR
Sbjct: 181 -----GVKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRD 235
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258
+ EAA I C LFI+++DA + T Q + ++V L ++ D
Sbjct: 236 TFDEAASIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD 281
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 599 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 654
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F ++LDA R + + ++++VN L + + VQ Y +I
Sbjct: 655 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLESRVQ---TY---------VIA 701
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 332
N + + R GR++K + P ++R + I T P D V L
Sbjct: 702 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERYEILKTI--TSKTPLSDEVNL 752
>gi|315045474|ref|XP_003172112.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
gi|311342498|gb|EFR01701.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
Length = 393
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 215
VP L + G +G GKS + + + + + G L +G GE +R+ R A +
Sbjct: 258 VPRGLLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGRLFAGIVGESESRVREMIRVAEAL 317
Query: 216 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
C ++I+++D + G N+++ AT + + E+
Sbjct: 318 ----SPCIVWIDEIDKSFNQSEGKGDSGTTNRVL-ATFLT-------------WLSEKTS 359
Query: 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVPKEDIV 330
+V ++ T N+F L LIR GR ++ ++ P +R V R D+V D+
Sbjct: 360 QVFVVATANNFEVLPLELIRKGRFDEIFFVGLPVESERKQIFEVLLSQLRPDSVQNYDL- 418
Query: 331 KLVDTFPGQSIDFFGA 346
+ ++IDF GA
Sbjct: 419 ---QSLSKKAIDFSGA 431
>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
Length = 492
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 241 LAEQIRELREVVELPLINPELFRRVGITPPKGCL------------LFGPPGTGKTLLAR 288
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 289 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 344
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 345 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 394
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 395 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 454
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 455 MFAIRAEREFVIDEDFMKAVRKVG 478
>gi|302425218|sp|D4GUJ7.2|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
Length = 406
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVP 319
>gi|24663015|ref|NP_648525.1| Rpt4R [Drosophila melanogaster]
gi|7294649|gb|AAF49987.1| Rpt4R [Drosophila melanogaster]
gi|19527781|gb|AAL90005.1| AT06668p [Drosophila melanogaster]
gi|220960210|gb|ACL92641.1| CG7257-PA [synthetic construct]
Length = 398
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|392559623|gb|EIW52807.1| AAA-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1055
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 33/202 (16%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L ++G G GK+ V + G+N I + EL + G K +R + A+
Sbjct: 730 LLLYGYPGCGKTLLASAVAKECGLNFISIKGPELLNKYIGASEKSVRDLFERAS----AA 785
Query: 220 KMCCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 275
K C LF ++ D+ A + G G T VN + T M+ A+ L G+Y
Sbjct: 786 KPCVLFFDEFDSIAPKRGHDSTGVTDRVVNQML---TQMDGAEG-----LDGVYVLAATS 837
Query: 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV-PKEDIVKL 332
R +I + L+R GR++K P+ EDRI + + R + P D+ +L
Sbjct: 838 RPDLIDSA---------LLRPGRLDKSLLCDMPSLEDRIEILDALRRKVAIAPSVDLAEL 888
Query: 333 VDTFPGQSIDFFGA-LRARVYD 353
G F GA L+A VY+
Sbjct: 889 AHETEG----FSGADLQALVYN 906
>gi|448613304|ref|ZP_21663184.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
gi|445740201|gb|ELZ91707.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|448561286|ref|ZP_21634638.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|448582081|ref|ZP_21645585.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|448605891|ref|ZP_21658484.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625274|ref|ZP_21671041.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
gi|445721518|gb|ELZ73186.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|445731729|gb|ELZ83312.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|445741214|gb|ELZ92718.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445749036|gb|EMA00482.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|302501592|ref|XP_003012788.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|327304381|ref|XP_003236882.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|291176348|gb|EFE32148.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|326459880|gb|EGD85333.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|326472718|gb|EGD96727.1| 26S proteasome regulatory subunit [Trichophyton tonsurans CBS
112818]
gi|326482035|gb|EGE06045.1| 26S protease regulatory subunit S10B [Trichophyton equinum CBS
127.97]
Length = 393
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|448616093|ref|ZP_21664803.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|445750748|gb|EMA02185.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 405
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|409728090|ref|ZP_11270965.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448724264|ref|ZP_21706772.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445785934|gb|EMA36715.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 406
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|195326985|ref|XP_002030203.1| GM25309 [Drosophila sechellia]
gi|194119146|gb|EDW41189.1| GM25309 [Drosophila sechellia]
Length = 398
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|448697529|ref|ZP_21698569.1| ATPase AAA [Halobiforma lacisalsi AJ5]
gi|445781482|gb|EMA32338.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 281 VTGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|443924537|gb|ELU43537.1| ATPase [Rhizoctonia solani AG-1 IA]
Length = 442
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A + N + + + + GE A+L+R+ + A K+ +
Sbjct: 172 LYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARLVREMFGYA----KEHEP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G + +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KTKLIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|336254270|ref|YP_004597377.1| proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
gi|335338259|gb|AEH37498.1| Proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
Length = 405
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|401826861|ref|XP_003887523.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
gi|392998529|gb|AFM98542.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
Length = 391
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
N V +I+ N L L+R GR+++ P
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIP 304
>gi|383625075|ref|ZP_09949481.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 281 VTGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|164424303|ref|XP_958860.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|157070458|gb|EAA29624.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|336464029|gb|EGO52269.1| hypothetical protein NEUTE1DRAFT_118706 [Neurospora tetrasperma
FGSC 2508]
gi|350296111|gb|EGZ77088.1| 26S proteasome subunit P45 [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 330
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|336368315|gb|EGN96658.1| hypothetical protein SERLA73DRAFT_75535 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381126|gb|EGO22278.1| hypothetical protein SERLADRAFT_409838 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKAPKGVLLYGPPGTGKTLLARAVAATLHTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 282
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKGGEIDYE 340
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 341 AIVKLSDAFNGADL 354
>gi|195589664|ref|XP_002084570.1| GD14340 [Drosophila simulans]
gi|194196579|gb|EDX10155.1| GD14340 [Drosophila simulans]
Length = 398
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 336 FPGQSI 341
F G +
Sbjct: 347 FNGADL 352
>gi|357509249|ref|XP_003624913.1| Cell division control protein-like protein [Medicago truncatula]
gi|124361206|gb|ABN09178.1| AAA ATPase, central region [Medicago truncatula]
gi|355499928|gb|AES81131.1| Cell division control protein-like protein [Medicago truncatula]
Length = 560
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ + + G N ++S + S AGE + +R+ + EA+
Sbjct: 51 LKFPRGLLLYGPPGTGKTSLVRAIVEECGANLTIISPNTVNSALAGESERNLREAFSEAS 110
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
GK +FI+++D R + V TLM+ ++ T+
Sbjct: 111 SHAALGKSSVIFIDEIDGLCPRRDSIRELDVRIASQLCTLMD-SNKATS----------S 159
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGR--MEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
NP V ++ + N + L R GR +E P E+R+ + T +P++
Sbjct: 160 NPGVVVVASTNRVDAIDPALRRYGRFDIETEVTVPNEEERLQILE--LYTRKIPRD 213
>gi|320033057|gb|EFW15006.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
Length = 749
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPG 338
N TL L+R GR++ + P E R + F V E D + L G
Sbjct: 626 ATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEG 685
Query: 339 QS 340
S
Sbjct: 686 YS 687
>gi|296805197|ref|XP_002843423.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
gi|238844725|gb|EEQ34387.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
Length = 393
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|389846288|ref|YP_006348527.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|388243594|gb|AFK18540.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 401
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 289
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVP 314
>gi|124512870|ref|XP_001349791.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
gi|23615208|emb|CAD52198.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
Length = 393
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
V II+ N L L+R GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 328 DIVKLVDTFPGQSI 341
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster]
Length = 397
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 335
N +L L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 336 FPGQSI 341
F G +
Sbjct: 346 FNGADL 351
>gi|448704017|ref|ZP_21700557.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
gi|445796633|gb|EMA47134.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
Length = 743
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 281 VTGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|389586053|dbj|GAB68782.1| 26S proteasome ATPase subunit [Plasmodium cynomolgi strain B]
Length = 420
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|383318674|ref|YP_005379515.1| AAA ATPase [Methanocella conradii HZ254]
gi|379320044|gb|AFC98996.1| AAA family ATPase, CDC48 subfamily [Methanocella conradii HZ254]
Length = 740
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K+ + + + P + ++G G GK+ + V + N I + E+ S GE K +
Sbjct: 476 KDVFEVTHTRAPKGILVFGPPGTGKTLLAKAVANESEANFISVKGPEVLSKWVGESEKAV 535
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R+ +R+A ++ +F +++DA A GG+ V ++V+ L +L
Sbjct: 536 RETFRKA----RQSAPTIIFFDEIDAIAPTRGGSFDSHVTERVVSQLL---------TEL 582
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
G+ EE V ++ N + L+R GR+++ + P ++R
Sbjct: 583 DGL---EELHSVVVMAATNRPDMVDTALLRPGRLDRLLYIPPPDER 625
>gi|429193621|ref|YP_007179299.1| AAA ATPase [Natronobacterium gregoryi SP2]
gi|448326640|ref|ZP_21515988.1| ATPase AAA [Natronobacterium gregoryi SP2]
gi|429137839|gb|AFZ74850.1| AAA family ATPase, CDC48 subfamily [Natronobacterium gregoryi SP2]
gi|445610829|gb|ELY64597.1| ATPase AAA [Natronobacterium gregoryi SP2]
Length = 743
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 281 VTGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|340721035|ref|XP_003398932.1| PREDICTED: peroxisome biogenesis protein 1-like [Bombus terrestris]
Length = 1028
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 118 QGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNV--KVPLILG----IWGGKGQGKS 171
+G+ H+ + + GL A + + +V I + L P + P+ L ++G G GK+
Sbjct: 732 KGVGHVWSDIGGL----AEVKRSLVEILQWPLKYPEIFKNAPIKLQNGVLLYGMPGTGKT 787
Query: 172 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231
+ + + G+N I + EL S G + +R + A + K C LF ++ D+
Sbjct: 788 MLAKAIANECGVNLISVKGPELLSKYIGVSEESVRNVFERAL----RAKPCVLFFDEFDS 843
Query: 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291
A R G + V +++VN L Q+ G+ ++E V ++ + L
Sbjct: 844 LAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVAASSRPDLLDP 890
Query: 292 PLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 324
L+R GR++K + P DR + + RT N+
Sbjct: 891 ALLRPGRLDKALYCPLPNEVDREEILIALCRTQNI 925
>gi|385802942|ref|YP_005839342.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
gi|339728434|emb|CCC39586.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
Length = 405
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP--------------TREDRIGVCSGIFRTDNVPKE 327
N F L ++R GR ++ P TRE + +DNV E
Sbjct: 294 ATNRFDMLDEAILRPGRFDRLIEVPKPGIEGRKIIFQIHTREMNV--------SDNVEFE 345
Query: 328 DIVKLVDTFPGQSI 341
+ ++ D G I
Sbjct: 346 QLAEMADDASGADI 359
>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
strain H]
Length = 441
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|145343062|ref|XP_001416285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576510|gb|ABO94578.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 366
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 34/267 (12%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K F P +++P + ++G G GKS + G+ I + EL S GE +
Sbjct: 93 KIFSQCP-LRLPTGVLLYGPPGSGKSAMAKAAIVNAGLRSITIKGPELFSKYYGESEATL 151
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA--TLMNIADNPTNV 263
R+ ++ A D C LF ++ ++ A R GGT V ++MVN TL++ ++
Sbjct: 152 RKLFKRAED----AAPCALFFDEFESLAPRRGGTDG-GVTDRMVNQFLTLLDGVES---- 202
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCSGIFRT 321
L G++ +I + + L+R GR++ + P + R + + R
Sbjct: 203 -LVGVF---------VICATSRPDVVDPALLRPGRLDHLLYLPMPDAIARAKIVRTLTRE 252
Query: 322 DNV-PKEDIVKL-----VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 375
V P D+V + +++F G + F + A V V K + +ER V
Sbjct: 253 IKVAPGVDLVAIAESERMESFSGADLAAFVSECANVAATRVLKTYT-AAVER--GEDVAE 309
Query: 376 KEGPPTFEQPKMTLDKLLEYGRMLVQE 402
PPT E P ++ L L QE
Sbjct: 310 PNAPPTIE-PHDVVEALKRSRASLSQE 335
>gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
Length = 405
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDVRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP--------------TREDRIGVCSGIFRTDNVPKE 327
N F L ++R GR ++ P TRE + +DNV E
Sbjct: 294 ATNRFDMLDEAILRPGRFDRLIEVPKPGIEGRKIIFQIHTREMNV--------SDNVEFE 345
Query: 328 DIVKLVDTFPGQSI 341
+ ++ D G I
Sbjct: 346 QLAEMADDASGADI 359
>gi|393232408|gb|EJD39990.1| 26S proteasome subunit P45 [Auricularia delicata TFB-10046 SS5]
Length = 373
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ +R L ++ + P +V + K L ++G G GK+
Sbjct: 123 LSEQVRELREVIELPLLNPELFQRVGIQPPKGVL------------LYGPPGTGKTLLAR 170
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V A + N + + + + GE A+++R+ + A D + C +F++++DA GR
Sbjct: 171 AVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYARD----HEPCVIFMDEIDAIGGR 226
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + Q+ G + R +I+ N TL L+R
Sbjct: 227 R--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIMATNRPDTLDPALLR 276
Query: 296 DGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + + ++ ++ + +VKL D F G +
Sbjct: 277 PGRLDRKIEIPLPNEQGRLEILKIHAKPVSKSGDIDYDAVVKLSDGFNGADL 328
>gi|303320901|ref|XP_003070445.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110141|gb|EER28300.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 749
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPG 338
N TL L+R GR++ + P E R + F V E D + L G
Sbjct: 626 ATNKPETLDPALMRPGRLDNILYVGLPDMEARKEILDIWFSKSEVHDEVDPIALASRTEG 685
Query: 339 QS 340
S
Sbjct: 686 YS 687
>gi|352681678|ref|YP_004892202.1| AAA family ATPase [Thermoproteus tenax Kra 1]
gi|350274477|emb|CCC81122.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus tenax Kra 1]
Length = 730
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + G N I + E+ S GE K++R+ +++A
Sbjct: 484 LRAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFQKA- 542
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +FI+++DA A G V ++V L ++ G+ E
Sbjct: 543 ---RMAAPCVVFIDEIDALASARGLGADSFVTERVVAQML---------AEMDGIRTLEN 590
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------ 325
I+V G N + L+R GR ++ + P + + + + T NVP
Sbjct: 591 -----IVVIGATNRPDLVDPALLRPGRFDRIIYVPPPDFKARLEIFLIHTRNVPLAKDVD 645
Query: 326 KEDIVKLVDTFPGQSIDF------FGALRARVYDDEV 356
E++ + + + G I+ F ALR + EV
Sbjct: 646 LEELARRTEGYSGADIELVVREATFLALREDINAKEV 682
>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax Sal-1]
gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
Length = 420
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|355572388|ref|ZP_09043532.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
gi|354824762|gb|EHF09004.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
Length = 412
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 192 LHGPPGTGKTLLARAVAHETNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 247
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA GA R TT ++ V TLM + L GM E V II
Sbjct: 248 TIIFIDEIDAVGASRTESTTS---GDREVQRTLMQL--------LAGMDGFERRGDVKII 296
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAP 306
N L L+R GR ++ P
Sbjct: 297 GATNRIDILDRALLRPGRFDRIIEIP 322
>gi|341896869|gb|EGT52804.1| hypothetical protein CAEBREN_04435 [Caenorhabditis brenneri]
Length = 268
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 17 LAEQIRELREVVELPLINPELFRRVGITPPKGCL------------LFGPPGTGKTLLAR 64
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 65 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 120
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 121 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 170
Query: 296 DGRMEK--FYWAPTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 171 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 230
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 231 MFAIRAEREFVIDEDFMKAVRKVG 254
>gi|156102603|ref|XP_001616994.1| 26S proteasome regulatory subunit [Plasmodium vivax Sal-1]
gi|148805868|gb|EDL47267.1| 26S proteasome regulatory subunit, putative [Plasmodium vivax]
Length = 393
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
V II+ N L LIR GR+++ P + RI + + + + + E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGEIDYE 333
Query: 328 DIVKLVDTFPG 338
+ +L D F G
Sbjct: 334 SVCRLCDGFNG 344
>gi|154151138|ref|YP_001404756.1| ATPase AAA [Methanoregula boonei 6A8]
gi|153999690|gb|ABS56113.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
Length = 801
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 141 VVHITKNFLNLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
++ I + L P + K P + ++G G GK+ + + +K +N I + EL
Sbjct: 466 LIKIIEGRLRYPKIFEKLDYKPPRGILLFGPPGTGKTLLAKGIASKRQLNFISVKGPELL 525
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 254
S G+ K +R+ +R+A ++ C +F +++DA + G T + V + +
Sbjct: 526 SKGVGDSEKHVREAFRKA----RQSAPCIIFFDEIDALFPKRGTVADNTHVTESVLSQFL 581
Query: 255 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+L G+ EE V +I N L L+R GR+EK + P
Sbjct: 582 T--------ELDGI---EELKEVFVIGATNRPDLLDPALLRPGRLEKHLYIP 622
>gi|452821838|gb|EME28864.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 406
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 26/191 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+S+ LR L ++ P +V +K P + ++G G GK+
Sbjct: 150 LSEQLRELREVVELPLTNPELFQRV------------GIKTPKGVLLYGPPGTGKTLLAR 197
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
+ + M + + + A + GE A++IR+ ++ A K + C +F++++DA GR
Sbjct: 198 AIASNMDCSFLKVVASAIVDKYIGESARIIREMFQYA----KAHEPCIIFMDEIDAIGGR 253
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G +E +V +++ N L L+R
Sbjct: 254 R--FSEGTSADREIQRTLMELLN-----QLDGF---DEIGKVKLVMATNRPDVLDPALLR 303
Query: 296 DGRMEKFYWAP 306
GR+++ P
Sbjct: 304 PGRLDRKIEIP 314
>gi|448580267|ref|ZP_21644930.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
gi|445722482|gb|ELZ74144.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
Length = 250
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 33 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 88
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 89 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 138
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 139 ATNRFDMLDPAILRPGRFDRLIEVP 163
>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449066788|ref|YP_007433870.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449069061|ref|YP_007436142.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449035296|gb|AGE70722.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449037569|gb|AGE72994.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 563
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++D+ A G +T V ++VN L ++ G+ E V +I
Sbjct: 564 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---------AEMDGIEKLEN---VVVIA 611
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 612 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 664
>gi|367020878|ref|XP_003659724.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
gi|347006991|gb|AEO54479.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
Length = 391
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 332 SIVKMSDGLNGADL 345
>gi|428320723|ref|YP_007118605.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244403|gb|AFZ10189.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 545
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIACEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A I C L+I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ P+ +R
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESER 425
>gi|401015370|gb|AFP89349.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase, partial
[Prunus persica]
Length = 23
Score = 47.4 bits (111), Expect = 0.016, Method: Composition-based stats.
Identities = 22/23 (95%), Positives = 23/23 (100%)
Query: 180 KMGINPIMMSAGELESGNAGEPA 202
KMGI+PIMMSAGELESGNAGEPA
Sbjct: 1 KMGISPIMMSAGELESGNAGEPA 23
>gi|435850742|ref|YP_007312328.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
gi|433661372|gb|AGB48798.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
Length = 743
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + ++G G GK+ + V ++ N I + EL S GE K +R+ +R+A
Sbjct: 479 NTTPPRGILLFGPPGTGKTMLAKAVASESEANFISIKGPELLSKYVGESEKAVRETFRKA 538
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ +F +++DA A G +T V ++V+ L I E
Sbjct: 539 ----KQAAPTVIFFDEIDAMAPERGASTDAHVTERVVSQILTEID------------GVE 582
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 311
E V +I N + L+R GR ++ + P +E R
Sbjct: 583 ELKDVVVIAATNRPDIIDPALLRPGRFDRLIYVKPPEKEGR 623
>gi|395326665|gb|EJF59072.1| 26S proteasome subunit P45 [Dichomitus squalens LYAD-421 SS1]
Length = 400
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 327
R +I+ N TL L+R GR+++ P R + + + S + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEIDYE 341
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|423402042|ref|ZP_17379215.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|423477266|ref|ZP_17453981.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
gi|401651941|gb|EJS69501.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|402430893|gb|EJV62966.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
Length = 314
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 71 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 126
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 127 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 171
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 172 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 229
Query: 330 VKLVDTFPGQSIDFF 344
K + F G + +
Sbjct: 230 SKYAEHFSGADLTYL 244
>gi|423458721|ref|ZP_17435518.1| hypothetical protein IEI_01861 [Bacillus cereus BAG5X2-1]
gi|401145884|gb|EJQ53405.1| hypothetical protein IEI_01861 [Bacillus cereus BAG5X2-1]
Length = 314
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 71 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 126
Query: 220 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 127 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 171
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 329
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 172 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 229
Query: 330 VKLVDTFPGQSIDFF 344
K + F G + +
Sbjct: 230 SKYAEHFSGADLTYL 244
>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 839
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 572 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRA- 630
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 631 ---RASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 672
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P ++++ + + R++ P D
Sbjct: 673 NDRRGIFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNEDEKLDIIKTLTRSNGTPLADD 732
Query: 330 VKL 332
V+L
Sbjct: 733 VEL 735
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR + EA
Sbjct: 241 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEAK 300
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F +++DA + G Q + ++V L ++ + + E+
Sbjct: 301 AIAP----CLMFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDE----------LSMEK 346
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 328
P+IV G N +L A L R GR ++ P R+ + + + E D
Sbjct: 347 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSENLKIDGEID 406
Query: 329 IVKLVDTFPGQSIDFFGA 346
+L PG F GA
Sbjct: 407 FAQLAKLTPG----FVGA 420
>gi|88602110|ref|YP_502288.1| ATPase AAA [Methanospirillum hungatei JF-1]
gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
Length = 801
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 27/229 (11%)
Query: 127 LDGLYIAPAFMDKVV---VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 183
++GL ++K++ VH F L +K P + ++G G GK+ + V AK +
Sbjct: 456 VEGLDAEKHEIEKIIEWPVHRRDAFEKL-KIKPPKGILLFGPPGTGKTLLAKAVAAKSRM 514
Query: 184 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 243
N I + EL S GE K +R+ +R+A ++ +F +++DA + G Q
Sbjct: 515 NFISVKGPELLSKWVGESEKQVREAFRKA----RQSAPSIIFFDEIDALVQQRG---QQH 567
Query: 244 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
N+++ + L I L M EE V I+ N L L+R GR+EK
Sbjct: 568 TNSRVGESVLSQI--------LTEMDGVEELSGVVIMAATNRPDLLDPALLRPGRLEKHI 619
Query: 304 W--APTREDRIGVCS------GIFRTDNVPKEDIVKLVDTFPGQSIDFF 344
+ P R + G +N+ + I + + F G I F
Sbjct: 620 YIKPPNLNGRKAILKIYLRDLGTLLDENIDYDAIAREMRYFVGADIHAF 668
>gi|440797367|gb|ELR18455.1| 26S proteasome AAAATPase subunit RPT4a, putative [Acanthamoeba
castellanii str. Neff]
Length = 391
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAMAHNVEAKFMKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR +Q T ++ + TLM + + GM
Sbjct: 225 ---REHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNQMDGFDELGM----- 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 327
V II+ N L L+R GR+++ P R D I + S I + ++ E
Sbjct: 275 ---VKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNESARLDIIKIHSESITKHGDIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VKL D F G +
Sbjct: 332 SVVKLSDGFNGADL 345
>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
Length = 420
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
Length = 809
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 541 ISAPAGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFQRA- 599
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ + ++ V TL+ +L G+
Sbjct: 600 ---RASAPCIIFFDELDALVPRR--TSSLSESSARVVNTLLT--------ELDGL----- 641
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 325
N R I V G N + ++R GR++K + PT E+R+ + + + + P
Sbjct: 642 NDRQGIFVVGATNRPDMIDPAMLRPGRLDKTLYIELPTAEERLEILRTLVKANKTP 697
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 215 VEPPRGVLLYGPPGCGKTTIANALAGELQVPFINISAPSVVSGMSGESEKKLREIFEEAR 274
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 275 SLAP----CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTDGK----- 324
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK 301
P++V G N +L + L R GR ++
Sbjct: 325 ----PVVVLGATNRPDSLDSALRRAGRFDR 350
>gi|169600986|ref|XP_001793915.1| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
gi|160705850|gb|EAT88552.2| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHASSVVTDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|448318822|ref|ZP_21508334.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
gi|445598003|gb|ELY52073.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
Length = 405
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|407465786|ref|YP_006776668.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
gi|407048974|gb|AFS83726.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
Length = 710
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K+ + +V+ P + + G G GK+ + + N I + EL S GE K +
Sbjct: 473 KDAYDFVDVESPKGILLHGPPGTGKTLIAKALAKMTESNFISIKGPELLSKWVGESEKGV 532
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R+ +R+A ++ C +F++++DA R G + V +V+ L I
Sbjct: 533 REIFRKA----RQAAPCIIFLDEVDALVPRRGSGSDSHVTENVVSQILTEID-------- 580
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR-------IGVCSGI 318
G+ EE V II N + L+R GR ++ P +++ I
Sbjct: 581 -GL---EELHNVLIIGATNRLDIVDEALLRPGRFDRIIKVPNPDEKGRQHIFEIHTKKKP 636
Query: 319 FRTDNVPKEDIVKLVDTFPGQSI 341
+D V +IVKL D F G I
Sbjct: 637 LASD-VKISEIVKLTDDFSGAEI 658
>gi|358342186|dbj|GAA49709.1| 26S proteasome regulatory subunit T6, partial [Clonorchis sinensis]
Length = 666
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 38/257 (14%)
Query: 102 ESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI-- 159
ES T + ++ S L ++ D Y +DK + I K + LP VK P +
Sbjct: 139 ESYTLHKILPSKIDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFE 196
Query: 160 -LGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY- 209
LGI +G G GK+ V I +S EL GE A+++R+ +
Sbjct: 197 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFV 256
Query: 210 --REAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
RE A I +F++++D+ G+ R+ ++ Q L+N QL
Sbjct: 257 MAREHAPSI-------IFMDEVDSIGSTRVESSSGGDSEVQRTMLELLN--------QLD 301
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNV 324
G E + +I+ N L + L+R GR+++ + AP E R+ + R N+
Sbjct: 302 GF---EPKQNIKVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNL 358
Query: 325 PKE-DIVKLVDTFPGQS 340
++ D+ KL ++ PG S
Sbjct: 359 TRDIDLRKLAESMPGAS 375
>gi|452949138|gb|EME54609.1| ATPase [Amycolatopsis decaplanina DSM 44594]
Length = 759
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 110 MSSYDYISQGLRHLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKG 167
MS+ D ++ G LD+ + + + + V+ + +F L V P + ++G G
Sbjct: 484 MSTSDNLATGGLTLDDVGNMTDVKQSLTEAVLWPLRYPDSFARL-GVDPPRGVLLYGPPG 542
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227
GK+F + +N + EL GE + +R+ +R AA+ +F++
Sbjct: 543 GGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIFLD 598
Query: 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287
++DA A R G ++ V++++V A L +L G+ E +++ +
Sbjct: 599 EIDALAPRRGQSSDSGVSDRVVAALL---------TELDGVEPMREV----VVLGATNRP 645
Query: 288 TLYAP-LIRDGRMEKFYWAP 306
L P L+R GR+E+ + P
Sbjct: 646 ELVDPALLRPGRLERRVYVP 665
>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
Length = 747
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 493 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 548
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 280
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 549 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 595
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 596 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 649
>gi|406862559|gb|EKD15609.1| 26S protease regulatory subunit s10b [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 390
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHAAGVVTEGDVDFE 330
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|374632948|ref|ZP_09705315.1| AAA family ATPase, CDC48 subfamily [Metallosphaera yellowstonensis
MK1]
gi|373524432|gb|EHP69309.1| AAA family ATPase, CDC48 subfamily [Metallosphaera yellowstonensis
MK1]
Length = 768
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
++ + V+ P + ++G G GK+ + V + G N I + E+ S GE K IR
Sbjct: 488 DYYEMAGVEPPRGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIR 547
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
+ +R+A + +F +++DA A G + V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAIAPIRGLSPDSGVTERLVNQLL---------AEMD 594
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLMYVP 631
>gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|448296658|ref|ZP_21486712.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|445580951|gb|ELY35317.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
Length = 701
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + ++ G+N I ++ EL GE K +R+ + A ++
Sbjct: 485 LYGPPGTGKTLLARAIASESGVNFIHVAGPELLDRYVGESEKAVRKVFERA----RQTAP 540
Query: 222 CCLFINDLDAGAGRMGGTTQYT--VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
+F +++DA A GG + T V +Q++ L +ADNP V L +E
Sbjct: 541 SIVFFDEIDALAAERGGGHEVTERVVSQLLT-ELDGLADNPNLVVLAATNRKE------- 592
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAP 306
L LIR GR+E P
Sbjct: 593 --------ALDRALIRPGRLETHIEVP 611
>gi|162606466|ref|XP_001713263.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
gi|12580729|emb|CAC27047.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
Length = 391
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + +K N I ++ EL GE +L+R ++ A K
Sbjct: 175 LYGEPGTGKTLLAKAIASKTKANFIKITGSELVQKFLGEGPRLVRDLFKTA----HKLSP 230
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +F++++DA G R T ++ + V T++ + + QL G N + II
Sbjct: 231 CIIFMDEIDAIGTIR---TDSHSEGEKEVQRTMLELLN-----QLDGFTT---NQNIKII 279
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
+ N TL LIR GR+++ +DR
Sbjct: 280 MATNRIDTLDPALIRPGRIDRKIEFSLPDDR 310
>gi|119510147|ref|ZP_01629286.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
gi|119465208|gb|EAW46106.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
Length = 504
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + ++LGI +G GKS + + + + + G L G GE R R
Sbjct: 257 LPHPRGLMLLGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 309
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D G +G +++ + +A
Sbjct: 310 QMIQVAEALAPCVLWIDEIDKGFSGLGAKGDAGTASRVFGTFITWLA------------- 356
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T ND L ++R GR ++ ++ PT+++R V R N+
Sbjct: 357 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQDERKAIFNVHLSRLRPHNLK 415
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 416 SYDIDRLAYETP----DFSGA 432
>gi|73920780|sp|Q07590.2|SAV_SULAC RecName: Full=Protein SAV
Length = 780
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 280
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>gi|341038686|gb|EGS23678.1| 26S protease subunit RPT4 (26S protease subunit SUG2)-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 391
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R + + + S + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSASVAKEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D F G +
Sbjct: 332 SIVKMSDGFNGADL 345
>gi|449066850|ref|YP_007433932.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449069122|ref|YP_007436203.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
gi|449035358|gb|AGE70784.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449037630|gb|AGE73055.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 519 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 574
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 280
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 575 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 621
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 622 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 675
>gi|388501068|gb|AFK38600.1| unknown [Lotus japonicus]
Length = 400
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPRGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 230
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
D + C +F++++DA +GG ++ T ++ + TLM + + QL G
Sbjct: 231 D----HQPCIIFMDEIDA----IGGLRFSEGTSADREIQRTLMELLN-----QLDGF--- 274
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVP 325
++ +V +I+ N L L+R GR+++ P + R+ + +GI + +
Sbjct: 275 DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID 334
Query: 326 KEDIVKLVDTFPGQSI 341
E +VKL + F G +
Sbjct: 335 YEAVVKLAEGFNGADL 350
>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
Length = 780
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 280
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>gi|220907834|ref|YP_002483145.1| ATPase AAA [Cyanothece sp. PCC 7425]
gi|219864445|gb|ACL44784.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
Length = 515
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 250 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 306
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A + C L+I+++D G + G + ++ V +L+ +
Sbjct: 307 LAEAMAP----CVLWIDEIDKAFGNLTSGADGDSGTSRRVFGSLIT-------------W 349
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT 321
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R IFR
Sbjct: 350 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTESER----QDIFRV 399
>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
Length = 814
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 545 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFNRA- 603
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 604 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 645
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P E+++ + + R++ P D
Sbjct: 646 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNFEEKVDIMRTLIRSNGTPIADD 705
Query: 330 VKL 332
V +
Sbjct: 706 VDI 708
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 230 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRELFDEAK 289
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F +++DA + G Q + ++V A L+ D + ++ G
Sbjct: 290 SLAP----CLVFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELSFEKMEGK----- 339
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 328
P+IV G N +L A L R GR ++ P R + + + + E D
Sbjct: 340 ----PVIVIGATNRPDSLDAALRRAGRFDREICLNVPNETSRYFILKKMASSLKIDGEID 395
Query: 329 IVKLVDTFPGQSIDFFGA 346
+KL PG F GA
Sbjct: 396 FIKLAKLTPG----FVGA 409
>gi|340502234|gb|EGR28943.1| vesicular transport protein cdc48, putative [Ichthyophthirius
multifiliis]
Length = 670
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N+ P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 429 NISNPSGVLMYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA 488
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K C +F +++DA + G + V ++VN+ L +L G E
Sbjct: 489 ----KTSAPCIIFFDEIDALVPKRGSDSTNQVTERVVNSLL---------AELDGF---E 532
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320
+V +I N + L+R GR++K + P E++I + + +
Sbjct: 533 GRKQVFVIAATNRPDIIDPALLRGGRLDKLLYVPLPANEEKILILEALLK 582
>gi|449330096|gb|AGE96360.1| 26S proteasome regulatory subunit 10 [Encephalitozoon cuniculi]
Length = 390
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
+R L ++ P ++ VH K L ++G G GK+ +V A
Sbjct: 143 IRELREVIELPLKNPDIFKRIGVHAPKGVL------------LYGPPGTGKTLLARIVAA 190
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
M +N + + + L GE +++IR+ + A ++ C +F++++DA G+ +
Sbjct: 191 TMDVNFLKVVSSALIEKYIGESSRMIREMFAYA----RRKAPCIIFMDEIDAIGGKR--S 244
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
+ + +++ V TLM + + QL G +E V +I+ N L L+R GR+
Sbjct: 245 RESSSSDREVQRTLMELLN-----QLDGF---KELDSVKVIMATNRPDILDPALLRPGRL 296
Query: 300 EKFYWAPT-----REDRIGVCSGIFRT-DNVPKEDIVKLVDTFPGQSI 341
++ P R++ + + S + + + + + +VKL F G +
Sbjct: 297 DRKIEIPLPNEQGRKEILKIHSRLMNSIEEIDYDSLVKLTSGFNGADL 344
>gi|19074441|ref|NP_585947.1| 26S PROTEASOME REGULATORY SUBUNIT 10 [Encephalitozoon cuniculi
GB-M1]
gi|19069083|emb|CAD25551.1| 26S PROTEASOME REGULATORY SUBUNIT 10 [Encephalitozoon cuniculi
GB-M1]
Length = 390
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 179
+R L ++ P ++ VH K L ++G G GK+ +V A
Sbjct: 143 IRELREVIELPLKNPDIFKRIGVHAPKGVL------------LYGPPGTGKTLLARIVAA 190
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
M +N + + + L GE +++IR+ + A ++ C +F++++DA G+ +
Sbjct: 191 TMDVNFLKVVSSALIEKYIGESSRMIREMFAYA----RRKAPCIIFMDEIDAIGGKR--S 244
Query: 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299
+ + +++ V TLM + + QL G +E V +I+ N L L+R GR+
Sbjct: 245 RESSSSDREVQRTLMELLN-----QLDGF---KELDSVKVIMATNRPDILDPALLRPGRL 296
Query: 300 EKFYWAPT-----REDRIGVCSGIFRT-DNVPKEDIVKLVDTFPGQSI 341
++ P R++ + + S + + + + + +VKL F G +
Sbjct: 297 DRKIEIPLPNEQGRKEILKIHSRLMNSIEEIDYDSLVKLTSGFNGADL 344
>gi|402086352|gb|EJT81250.1| 26S protease subunit rpt4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 390
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGDVDFE 330
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|448362336|ref|ZP_21550947.1| ATPase AAA [Natrialba asiatica DSM 12278]
gi|445648857|gb|ELZ01805.1| ATPase AAA [Natrialba asiatica DSM 12278]
Length = 742
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|388851908|emb|CCF54502.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Ustilago hordei]
Length = 883
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR + EAA
Sbjct: 185 VKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAA 244
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C LFI+++DA + T Q + ++V L ++ D + E+
Sbjct: 245 SIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD----------LSWEK 289
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRME 300
P+++ G N +L + L R GR +
Sbjct: 290 TDGKPVMIIGATNRPDSLDSALRRAGRFD 318
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 604 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 659
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F ++LDA R + + ++++VN L + T VQ Y +I
Sbjct: 660 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLETRVQ---TY---------VIA 706
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 332
N + + R GR++K + P ++R+ + I T P D V L
Sbjct: 707 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERLEILKTI--TSKTPLSDEVDL 757
>gi|448350148|ref|ZP_21538967.1| ATPase AAA [Natrialba taiwanensis DSM 12281]
gi|445637655|gb|ELY90803.1| ATPase AAA [Natrialba taiwanensis DSM 12281]
Length = 742
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|403223916|dbj|BAM42046.1| metallopeptidase [Theileria orientalis strain Shintoku]
Length = 680
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K+P + + G G GK+ + ++ G+ I S E E G A+ IR ++ A
Sbjct: 228 KLPKGILLAGRPGTGKTLLARALASEAGVPFIHASGSEFEEMFVGVGARRIRDLFKTAKT 287
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
I C +FI++LDA + T T M + N V+L G QE
Sbjct: 288 IAP----CIVFIDELDAVGSKRTSTDHNT----------MRMTLNQLLVELDGFAKQEG- 332
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ ++ N +L L+R GR++K + P
Sbjct: 333 --IVVLCATNFPESLDPALVRPGRLDKTVYIP 362
>gi|448369971|ref|ZP_21556424.1| ATPase AAA [Natrialba aegyptia DSM 13077]
gi|445650411|gb|ELZ03335.1| ATPase AAA [Natrialba aegyptia DSM 13077]
Length = 742
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|427417138|ref|ZP_18907321.1| AAA+ family ATPase [Leptolyngbya sp. PCC 7375]
gi|425759851|gb|EKV00704.1| AAA+ family ATPase [Leptolyngbya sp. PCC 7375]
Length = 511
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
LNL K LI+GI +G GKS + + + I + + AG L G K
Sbjct: 276 LNLTPPKGILIVGI---QGCGKSLAAKTIAREWQIPLLKLDAGRLYDKYVGGSEK----N 328
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
+R+A + +K L+I++++ MGGT + + +
Sbjct: 329 FRQAVSLAEKMAPAVLWIDEIEKT---MGGTQSMDTDGGLSRRLFGSFL----------T 375
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVP 325
+ QE++ V ++ T ND S L L+R GR ++ ++ P +DRI + + + R P
Sbjct: 376 WLQEKSQEVFVVATANDISQLPPELLRKGRFDEIFFVDLPDAQDRIKILTIHLNRHHQTP 435
Query: 326 ----KEDIVKLVDTFPGQSI 341
++V+ + F G I
Sbjct: 436 GNFNMAELVQATEGFSGAEI 455
>gi|374635878|ref|ZP_09707467.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
gi|373560840|gb|EHP87090.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
Length = 732
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA----RQTAP 546
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++D+ A R G V ++VN L +L G+ EE V +I
Sbjct: 547 TVIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EEPKDVVVIA 594
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 332
N L L+R GR+++ + P + + + T N+P + V L
Sbjct: 595 ATNRPDILDPALLRPGRLDRIVFVPAPDKKTRLSIFKVHTKNMPLAEDVDL 645
>gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
Length = 398
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 227
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 228 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ V GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAVGIAKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
++ L + F G +
Sbjct: 335 AVINLAEGFNGADL 348
>gi|428305577|ref|YP_007142402.1| AAA ATPase [Crinalium epipsammum PCC 9333]
gi|428247112|gb|AFZ12892.1| AAA ATPase central domain protein [Crinalium epipsammum PCC 9333]
Length = 544
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + ++ + + + +G L G GE +RQ +
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDSGRLFGGIVGESESRVRQMIQ 335
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A + C L+I+++D G + G + ++ V +L+ +
Sbjct: 336 LAEAMAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 378
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 379 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEIER 422
>gi|427706264|ref|YP_007048641.1| AAA ATPase [Nostoc sp. PCC 7107]
gi|427358769|gb|AFY41491.1| AAA ATPase central domain protein [Nostoc sp. PCC 7107]
Length = 504
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
gi|397651469|ref|YP_006492050.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
DSM 3638]
gi|393189060|gb|AFN03758.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
Length = 837
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 583 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 638
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A GG V ++++N L M +EN V +I
Sbjct: 639 AIIFIDEIDAIAPARGGYEGERVTDRLINQLLTE------------MDGIQENSGVVVIG 686
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 332
N + L+R GR ++ P +++ + T +P D V L
Sbjct: 687 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRGMPLADDVDL 737
>gi|348513282|ref|XP_003444171.1| PREDICTED: peroxisome biogenesis factor 1 [Oreochromis niloticus]
Length = 1221
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V G+N I + EL S G K +R ++ A + K
Sbjct: 843 LYGAPGTGKTLLARAVSKDSGMNFISIKGPELLSKYIGASEKGVRDVFQRA----QAAKP 898
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LF ++ DA A R G + V +++VN L + D +Q G+Y ++
Sbjct: 899 CILFFDEFDALAPRRGHDST-GVTDRVVNQLLTQL-DGVEGLQ--GVY----------VL 944
Query: 282 TGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 338
L P L+R GR++K + P E R+ + + T VP V L +
Sbjct: 945 AATSRPDLIDPALLRPGRLDKSLYCPPPDLEARVEILKAL--TAGVPLAPDVDL-EQLAA 1001
Query: 339 QSIDFFGA-LRARVYDDEVRKWISEVG 364
+ F GA L+A +Y+ ++ + +G
Sbjct: 1002 ATAQFTGADLKALLYNAQLEAVHNSIG 1028
>gi|256016691|emb|CAR63641.1| putative 26S proteasome regulatory chain 4 [Angiostrongylus
cantonensis]
Length = 435
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V I + +L N+G+ AKL+R+ ++ A K+
Sbjct: 219 LYGEPGTGKTLLAKAVANSTSATFIRATGADLVQKNSGDGAKLVRELFKMA----KESAP 274
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +F++++DA G R +++ Q V TL+ + + QL G E V +I
Sbjct: 275 CIVFLDEIDAVGTKRFDTSSR---GEQEVQRTLLELLN-----QLDGF---ESRGDVKVI 323
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG 317
+ N +L + L+R GR+++ P TR+ G+ +
Sbjct: 324 LATNRIDSLDSALLRPGRIDRKIELPKPDEKTRQKIFGIHTA 365
>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 832
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 555 ITAPSGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 613
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 614 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 655
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R + V G N + ++R GR++K + PT ++R + I R + P ++
Sbjct: 656 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIQLPTPDERFEILKTIVRANQSPIDND 715
Query: 330 VKL 332
V L
Sbjct: 716 VNL 718
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R + EA
Sbjct: 226 VEPPRGVLLYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAK 285
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F++++DA + G Q + ++V A L+ + D +++ N+
Sbjct: 286 SVAP----CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMD---ELRMENTNNK-- 335
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK 301
P+IV G N +L + L R GR ++
Sbjct: 336 ----PVIVIGATNRPDSLDSALRRAGRFDR 361
>gi|115389152|ref|XP_001212081.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
gi|114194477|gb|EAU36177.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
Length = 393
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|432329094|ref|YP_007247238.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
gi|432135803|gb|AGB05072.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
Length = 738
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +++A K+
Sbjct: 504 LYGPPGTGKTLLAKAVATESEANFISIKGPEVMSKWVGESEKAIREIFKKA----KQSSP 559
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++D+ A R G V ++VN L ++ D T ++ V +I
Sbjct: 560 CIVFLDEIDSIAPRRGYYAGSGVTERIVNQLLTSM-DGLTKME-----------GVVVIA 607
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
N + L+R GR+++ + P +++ + T N+P + V L + G++
Sbjct: 608 ATNRPDIVDPALLRPGRIDRIVYIPPPDEKARLEILKVHTRNMPLSEDVSL-EKIAGETE 666
Query: 342 DFFGA 346
+ GA
Sbjct: 667 FYTGA 671
>gi|328773002|gb|EGF83039.1| hypothetical protein BATDEDRAFT_33940 [Batrachochytrium
dendrobatidis JAM81]
Length = 402
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 21/195 (10%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
FL + +K P + ++G G GK+ V A + N + + + + GE A+LIR+
Sbjct: 172 FLRV-GIKPPKGVLLYGPPGTGKTLLARAVAATLECNFLKVVSSAIVDKYIGESARLIRE 230
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 231 MFGYA----KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG 284
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRT 321
+ +I+ N TL L+R GR+++ P + R+ V S I +
Sbjct: 285 --------QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEVIKIHASTITKH 336
Query: 322 DNVPKEDIVKLVDTF 336
+ E IVKL + F
Sbjct: 337 GEIDYEAIVKLSEGF 351
>gi|335438252|ref|ZP_08561000.1| proteasome-activating nucleotidase [Halorhabdus tiamatea SARL4B]
gi|334892446|gb|EGM30679.1| proteasome-activating nucleotidase [Halorhabdus tiamatea SARL4B]
Length = 403
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 SVLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|428164756|gb|EKX33771.1| hypothetical protein GUITHDRAFT_81158 [Guillardia theta CCMP2712]
Length = 655
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 29/197 (14%)
Query: 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200
++H K +L + P + ++G G GK+ + V + G N I + EL + GE
Sbjct: 378 ILHPQK--FSLLGLSAPTGVLLYGPPGCGKTLVAKAVARESGANFISVKGPELLNKFVGE 435
Query: 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDA---GAGRMGGTTQYTVNNQMVNATLMNIA 257
+ +RQ ++ A+ C +F ++LDA G GG V NQ++
Sbjct: 436 SERAVRQLFQRAS----ASAPCVVFFDELDALCPKRGGEGGVASERVVNQLLT------- 484
Query: 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 315
++ G+ + V +I N + A ++R GR++K + P +R+ +
Sbjct: 485 ------EMDGLNARRS---VFVIAATNRPDMIDAAMLRPGRLDKLLYVRLPKHPERLAIL 535
Query: 316 SGIFRTDNVPKEDIVKL 332
I R +P ++ VKL
Sbjct: 536 RTIAR--KMPIDETVKL 550
>gi|443475189|ref|ZP_21065146.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443019976|gb|ELS33990.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 498
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 257 LPHPRGLLLAGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFAGLVGES----ESRTR 309
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D G N++ L +A
Sbjct: 310 QMIQLAEALSPCVLWIDEIDKAFAGTDGRGDSGTTNRVFGTFLTWMA------------- 356
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T N+ TL L+R GR ++ ++ P++E+R V +R N
Sbjct: 357 -EKTSPVFVVATANNIRTLPPELLRKGRFDEVFFVGLPSQEERSQIFAVHLSKYRPHNTR 415
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 416 AYDIDRLAYETP----DFSGA 432
>gi|365986426|ref|XP_003670045.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
gi|343768814|emb|CCD24802.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
Length = 870
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 597 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 655
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 656 ---RASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 697
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P ++++ + + + R++ P D
Sbjct: 698 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNYDEKLDIITTLARSNGTPLADD 757
Query: 330 VKLVDTFPGQSI-DFFGA 346
V+ + + +F GA
Sbjct: 758 VQFSEIIKDERCRNFSGA 775
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 255 VEPPRGVLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIRELFEEA- 313
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K C +F +++DA + G Q + ++V A L+ D T Q G
Sbjct: 314 ---KALAPCLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELTMEQTNGK----- 364
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 328
P+IV G N +L A L R GR ++ P R+ + + + + D
Sbjct: 365 ----PVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSQNLKIDGSID 420
Query: 329 IVKLVDTFPGQSIDFFGA 346
+KL PG F GA
Sbjct: 421 FLKLAKLTPG----FVGA 434
>gi|257051455|ref|YP_003129288.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM
12940]
gi|256690218|gb|ACV10555.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940]
Length = 403
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 SVLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|330835721|ref|YP_004410449.1| AAA family ATPase [Metallosphaera cuprina Ar-4]
gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
Ar-4]
Length = 768
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
++ V+ P + ++G G GK+ + V + G N I + E+ S GE + IR
Sbjct: 488 DYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIR 547
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
+ +R+A + +F +++DA A G ++ V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAVAPMRGISSDSGVTERLVNQLL---------AEMD 594
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLVYVP 631
>gi|428776831|ref|YP_007168618.1| AAA ATPase [Halothece sp. PCC 7418]
gi|428691110|gb|AFZ44404.1| AAA ATPase central domain protein [Halothece sp. PCC 7418]
Length = 515
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 250 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLKLDTGRLFGGIVGES----ESRVR 302
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ + + C L+I+++D G + G + + +Q V +L+ +
Sbjct: 303 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 349
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 320
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R IFR
Sbjct: 350 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 398
>gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
gi|74996881|sp|Q54PJ1.1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
Length = 393
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 327
+V II+ N L L+R GR+++ P R D + + + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 328 DIVKLVDTF 336
I KL D F
Sbjct: 334 AIAKLADGF 342
>gi|71019677|ref|XP_760069.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
gi|46099715|gb|EAK84948.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
Length = 288
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 63 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 121
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 122 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 170
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 327
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 171 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTRPVAKKEELDYE 228
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 229 AIVKLSDGFNGADL 242
>gi|294495131|ref|YP_003541624.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
gi|292666130|gb|ADE35979.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
Length = 408
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V ++ + I MS +L GE A+L++ ++ A D
Sbjct: 192 MYGDPGTGKTLIAKAVASRAHASFIRMSGSDLVQKFIGEGARLVKDVFQMARD----KSP 247
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G T T + VN T++ + L M E +V II
Sbjct: 248 CILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LSEMDGFEPRGQVKIIA 297
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
N L L+R GR ++ P +++
Sbjct: 298 ATNRIDLLDPALLRPGRFDRVIEIPIPDEK 327
>gi|145255749|ref|XP_001399076.1| 26S protease subunit rpt4 [Aspergillus niger CBS 513.88]
gi|134084670|emb|CAK43348.1| unnamed protein product [Aspergillus niger]
gi|350630839|gb|EHA19211.1| hypothetical protein ASPNIDRAFT_212230 [Aspergillus niger ATCC
1015]
gi|358373476|dbj|GAA90074.1| 26S protease regulatory subunit S10B [Aspergillus kawachii IFO
4308]
Length = 393
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|428779319|ref|YP_007171105.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428693598|gb|AFZ49748.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 545
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 280 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLRLDTGRLFGGIVGES----ESRVR 332
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ + + C L+I+++D G + G + + +Q V +L+ +
Sbjct: 333 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 379
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 320
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R IFR
Sbjct: 380 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 428
>gi|390342478|ref|XP_785648.3| PREDICTED: nuclear valosin-containing protein [Strongylocentrotus
purpuratus]
Length = 976
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 216
P IL + G G GK+ + + + GIN I + EL + GE + +RQ ++ A
Sbjct: 692 PGIL-LAGPPGCGKTLLAKAIANESGINFISVKGPELMNMYVGESERAVRQCFQRA---- 746
Query: 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
+ C +F ++LDA R + + ++VN L ++ G+ E +
Sbjct: 747 RNSSPCVIFFDELDALCPRRSDVSDSGSSARVVNQLL---------TEMDGL---EARKQ 794
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 325
V I+ N + ++R GRM+K + P+ +DRI + I + P
Sbjct: 795 VFIMGATNRPDIIDPAVLRPGRMDKILYVGIPSNQDRIAILRTITKNGCKP 845
>gi|448312022|ref|ZP_21501775.1| ATPase AAA [Natronolimnobius innermongolicus JCM 12255]
gi|445603643|gb|ELY57605.1| ATPase AAA [Natronolimnobius innermongolicus JCM 12255]
Length = 743
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|350416782|ref|XP_003491100.1| PREDICTED: peroxisome biogenesis protein 1-like [Bombus impatiens]
Length = 1028
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + + G+N I + EL S G + +R + A + K
Sbjct: 778 LYGMPGTGKTMLAKAIANECGVNLISVKGPELLSKYVGVSEESVRNVFERAL----RAKP 833
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LF ++ D+ A R G + V +++VN L Q+ G+ ++E V ++
Sbjct: 834 CVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVA 880
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 324
+ L L+R GR++K + P DR + + +T N+
Sbjct: 881 ASSRPDLLDPALLRPGRLDKALYCPLPNEVDREEILIALCKTQNI 925
>gi|336477419|ref|YP_004616560.1| 26S proteasome subunit P45 family protein [Methanosalsum zhilinae
DSM 4017]
gi|335930800|gb|AEH61341.1| 26S proteasome subunit P45 family [Methanosalsum zhilinae DSM 4017]
Length = 410
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + ++ I MS +L GE A+L+R ++ A D
Sbjct: 194 LYGAPGTGKTLIAKAIASQANATFIRMSGSDLVQKFVGEGARLVRDVFQMARD----KSP 249
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++DA G T T + VN T++ + L M + V II
Sbjct: 250 SILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LAEMDGFDPTGDVKIIA 299
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKEDIVKLVDT 335
N L L+R GR ++ P R D + + + + D+V + + KL D
Sbjct: 300 ATNRIDLLDPALLRPGRFDRIIEVPLPDESGRSDILKIHTRHMSLGDDVDFDRLAKLTDG 359
Query: 336 FPGQSI 341
F G +
Sbjct: 360 FSGADL 365
>gi|391347147|ref|XP_003747826.1| PREDICTED: nuclear valosin-containing protein [Metaseiulus
occidentalis]
Length = 708
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 34/193 (17%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + GIN I + EL + GE K IRQ ++ A +
Sbjct: 484 MHGPPGCGKTLIAKAVANESGINFISVKGPELLNMYVGESEKAIRQVFQRA----RASAP 539
Query: 222 CCLFINDLDAGAGRM-----GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
C +F ++LDA R GG+T VN + M E +
Sbjct: 540 CVIFFDELDALCPRRSESGDGGSTSRVVNQLLTE-----------------MDGLEARKQ 582
Query: 277 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKED------ 328
V ++ N + ++R GR++ P R+DR + + + PK +
Sbjct: 583 VFVLAATNRPDIIDKAMLRPGRLDHIIHVGLPNRDDREDILRALTKNSTKPKIEGISLAA 642
Query: 329 IVKLVDTFPGQSI 341
I L + F G +
Sbjct: 643 IADLTEAFSGAEL 655
>gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
Length = 599
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 50/278 (17%)
Query: 147 NFLNLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200
FLN P K+P + + G G GK+ + + + G+ ++A E G
Sbjct: 170 TFLNQPEAFIRLGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVELFVGV 229
Query: 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMN 255
A +R +R+A K+ C +FI+++DA GAG GG + Q +N L
Sbjct: 230 GASRVRDLFRQA----KEKSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE 282
Query: 256 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIG 313
M EEN V ++ N L A L+R GR ++ P R R
Sbjct: 283 ------------MDGFEENSGVILLAATNRADVLDAALLRPGRFDRRIDVGLPDRRGREA 330
Query: 314 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA-----------LRARVYDDEVRKWISE 362
+ + RT P +D V L D + ++ F GA L AR + ++ E
Sbjct: 331 ILAVHARTR--PLDDSVSLSD-WASRTPGFSGADLANLLNEAAILTARQNMLSIGQFQLE 387
Query: 363 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 400
+ERI L N P + K L E G LV
Sbjct: 388 GALERITMGLSNR----PLQDSAKKRLIAYHEVGHALV 421
>gi|435848784|ref|YP_007311034.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
gi|433675052|gb|AGB39244.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
Length = 742
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 25/203 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N + L+R GR ++ P E R + G +V ++I ++ D
Sbjct: 605 ATNRPDMIDPALLRSGRFDRLVMIGEPDVEGRERILDIHTQGTPMAADVNLQEIAEITDG 664
Query: 336 FPG---QSIDFFGALRARVYDDE 355
+ G +SI A+ A D+E
Sbjct: 665 YVGSDLESIAREAAIEALREDEE 687
>gi|428220693|ref|YP_007104863.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994033|gb|AFY72728.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 523
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + +G L G GE R R
Sbjct: 266 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDSGRLFGGIVGES----ESRVR 318
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ +++ C L+I+++D G + + + ++ V A+L+ +
Sbjct: 319 QMIQLVEAIAPCVLWIDEIDKAFGNIHLNSDSDSGTSRRVFASLIT-------------W 365
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 366 MQEKTTPVFIVATANNVQILPAELLRKGRFDEIFFVNLPTITER 409
>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 24/188 (12%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GL + L + P K+ H+ VK+P + ++G G GK+ + V
Sbjct: 459 GLEQVKQELREVVEWPMKYRKLFAHM--------KVKIPKGILLYGPPGTGKTLLAKAVA 510
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+ N I + E S GE K +R+ +R+A ++ +FI+++DA A G
Sbjct: 511 TESEANFISVKGPEFLSKWVGESEKAVREVFRKA----RQAAPAVIFIDEIDAIAPMRGR 566
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
V ++V+ L M EE V +I N L L+R GR
Sbjct: 567 DIGSHVTERVVSQILTE------------MDGLEELHNVTVIAATNRPDILDPALLRPGR 614
Query: 299 MEKFYWAP 306
++ + P
Sbjct: 615 FDRIVYVP 622
>gi|428300919|ref|YP_007139225.1| AAA ATPase [Calothrix sp. PCC 6303]
gi|428237463|gb|AFZ03253.1| AAA ATPase central domain protein [Calothrix sp. PCC 6303]
Length = 502
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLSAKAIAHNWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D +G N++ + +A
Sbjct: 309 QMIQVAEALAPCILWIDEIDKSFAGLGSKGDAGTTNRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCS---GIFRTDNVP 325
E+ V ++ T ND L ++R GR ++ ++ PT+ +R + R+ N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFIGLPTQVERKAIFEVHLSRLRSHNLK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 NYDIDRLAYETP----DFSGA 431
>gi|448409675|ref|ZP_21574802.1| proteasome-activating nucleotidase [Halosimplex carlsbadense 2-9-1]
gi|445672446|gb|ELZ25018.1| proteasome-activating nucleotidase [Halosimplex carlsbadense 2-9-1]
Length = 433
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 222
G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 218 HGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEPS 273
Query: 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 282
LFI+++DA A + T T + V T+M + L M E+ V II
Sbjct: 274 VLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGEVRIIAA 323
Query: 283 GNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 324 TNRFDMLDRAILRPGRFDRLIEVP 347
>gi|154279056|ref|XP_001540341.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
gi|150412284|gb|EDN07671.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
Length = 392
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|148688744|gb|EDL20691.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_a [Mus musculus]
Length = 212
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228
GK+ V +++ N + + + + GE A+LIR+ + A D + C +F+++
Sbjct: 3 GKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIFMDE 58
Query: 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288
+DA GR ++ T ++ + TLM + + Q+ G + RV +I+ N T
Sbjct: 59 IDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNRPDT 108
Query: 289 LYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDTFPGQSI 341
L L+R GR+++ R D + + +G I + + E IVKL D F G +
Sbjct: 109 LDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADL 167
>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
fumigatus Af293]
gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus Af293]
gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus A1163]
Length = 784
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GL + +L L I P +V V NV+ P + + G G GK+
Sbjct: 224 GLDDVIQSLGDLLILPMTRPQVFVS--------SNVQPPRGVLLHGPPGCGKTMIANAFA 275
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
A++G+ I +SA + SG +GE K +R+ + EA K+ C +FI+++DA +
Sbjct: 276 AELGVPFIPISAPSIVSGMSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-E 330
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
+ Q + ++V A L+ D+ ++ + V ++ N +L A L R GR
Sbjct: 331 SAQREMEKRIV-AQLLTCMDDLA-------LDKTDGKPVIVLAATNRPDSLDAALRRGGR 382
Query: 299 MEK 301
+K
Sbjct: 383 FDK 385
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 555 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 614
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + ++VN L + ++ Q G+Y
Sbjct: 615 SSVP----CIIFFDELDALVPRRDDALS-EASARVVNTLLTELDGLGSSRQ--GIY---- 663
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 330
+I N + ++R GR+E + P +R+ + + R + ED+
Sbjct: 664 -----VIAATNRPDIIDPAMLRPGRLETLLYVSLPNPLERVEILKTLVRKLPIEFNEDMR 718
Query: 331 KLVDTFPGQSIDFFGALRAR 350
+L + G S G+L R
Sbjct: 719 RLAEECEGFSGADLGSLLRR 738
>gi|310790858|gb|EFQ26391.1| 26S proteasome subunit P45 family protein [Glomerella graminicola
M1.001]
Length = 391
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
5511]
Length = 743
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
12286]
gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
12286]
Length = 406
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE A+L+R + AAD +
Sbjct: 190 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAAD----REP 245
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 246 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 295
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 296 ATNRFDMLDRAILRPGRFDRLIEVP 320
>gi|448726352|ref|ZP_21708759.1| AAA family ATPase, partial [Halococcus morrhuae DSM 1307]
gi|445795172|gb|EMA45703.1| AAA family ATPase, partial [Halococcus morrhuae DSM 1307]
Length = 276
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + N I + +L S GE K IRQ +++A
Sbjct: 28 IEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFKKAR 87
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ +F ++LD+ A GG V+ ++VN L +L G+ E+
Sbjct: 88 QV----SPTVIFFDELDSLAPSRGGDVGSNVSERVVNQLL---------TELDGL---ED 131
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------ 325
V +I N + LIR GR ++ P+ E R + S TD+ P
Sbjct: 132 MKNVMVIAATNRPDMIDPALIRSGRFDRLVMVGQPSIEGRERILS--IHTDDTPLAADVS 189
Query: 326 KEDIVKLVDTFPGQSID 342
+I ++ D + G ++
Sbjct: 190 LREIAEITDGYVGSDLE 206
>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
gi|353231858|emb|CCD79213.1| putative 26s protease regulatory subunit [Schistosoma mansoni]
Length = 431
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 50/273 (18%)
Query: 120 LRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQ 168
L ++ D Y +DK + I K + LP VK P + LGI +G G
Sbjct: 161 LMMVEKVPDSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPGT 218
Query: 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLF 225
GK+ V I +S EL GE A+++R+ + RE A I +F
Sbjct: 219 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IF 271
Query: 226 INDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 284
++++D+ G+ R+ T Q L+N QL G E + +I+ N
Sbjct: 272 MDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATN 320
Query: 285 DFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSI 341
L + L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S
Sbjct: 321 RIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS- 379
Query: 342 DFFGALRARVYDDEVRKWISEVGIERIGKRLVN 374
GA EV+ +E G+ + +R V+
Sbjct: 380 ---GA--------EVKGVCTEAGMYALRERRVH 401
>gi|225562323|gb|EEH10602.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
gi|325089508|gb|EGC42818.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus H88]
Length = 392
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|121709954|ref|XP_001272593.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
gi|119400743|gb|EAW11167.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
Length = 393
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + I + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIIKIHSSTVQLEGDIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|380494809|emb|CCF32871.1| 26S protease subunit rpt4 [Colletotrichum higginsianum]
Length = 391
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|300710268|ref|YP_003736082.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
gi|448294593|ref|ZP_21484672.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
gi|299123951|gb|ADJ14290.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
jeotgali B3]
gi|445586270|gb|ELY40552.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
Length = 741
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISIRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LD+ A GG V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPARGGEVGSNVSERVVNQLL---------TELDGL---EEMENVMVIA 604
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------KEDIVKLV 333
N + LIR GR ++ P E R + T ++P ++ ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRLVMVGQPGEEGRKEILE--IHTQDIPLAADVSLRELAEIT 662
Query: 334 DTFPGQSI 341
D F G +
Sbjct: 663 DGFVGSDL 670
>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 430
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 38/240 (15%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKG 167
L ++ D Y +DK + I K + LP VK P + LGI +G G
Sbjct: 160 SLMMVEKVPDSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPG 217
Query: 168 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCL 224
GK+ V I +S EL GE A+++R+ + RE A I +
Sbjct: 218 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------I 270
Query: 225 FINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG 283
F++++D+ G+ R+ T Q L+N QL G E + +I+
Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMAT 319
Query: 284 NDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQS 340
N L + L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S
Sbjct: 320 NRIDILDSALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS 379
>gi|429855222|gb|ELA30190.1| 26s protease regulatory subunit s10b [Colletotrichum
gloeosporioides Nara gc5]
Length = 391
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|367042920|ref|XP_003651840.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
gi|346999102|gb|AEO65504.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
Length = 391
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|448298419|ref|ZP_21488448.1| ATPase AAA [Natronorubrum tibetense GA33]
gi|445591615|gb|ELY45816.1| ATPase AAA [Natronorubrum tibetense GA33]
Length = 743
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|427738561|ref|YP_007058105.1| AAA ATPase [Rivularia sp. PCC 7116]
gi|427373602|gb|AFY57558.1| AAA+ family ATPase [Rivularia sp. PCC 7116]
Length = 540
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 276 IPNPKGALLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRVR 328
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
+ + + C L+++++D G + G + ++ V +L+ +
Sbjct: 329 QMIQLTEAMAPCVLWMDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 375
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---REDRIGVCSGIFRTDNV 324
QE+ V I+ T N+ L A L+R GR ++ ++ PT R+D + V R + V
Sbjct: 376 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAERQDILKVHIQKLRPNRV 435
Query: 325 PKEDIVKL---VDTFPGQSID 342
D+ L + F G I+
Sbjct: 436 RDFDLTLLASRTENFSGAEIE 456
>gi|261201460|ref|XP_002627130.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|239592189|gb|EEQ74770.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|327348334|gb|EGE77191.1| proteasome regulatory particle subunit Rpt4 [Ajellomyces
dermatitidis ATCC 18188]
Length = 392
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|239611652|gb|EEQ88639.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
ER-3]
Length = 392
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
Length = 796
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 611
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 612 TVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 658
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
N L L+R GR ++ P +++
Sbjct: 659 ATNRPDILDPALLRPGRFDRLILVPAPDEK 688
>gi|189193421|ref|XP_001933049.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330906098|ref|XP_003295352.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
gi|187978613|gb|EDU45239.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311333431|gb|EFQ96552.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|399217513|emb|CCF74400.1| unnamed protein product [Babesia microti strain RI]
Length = 419
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + I + EL GE A+++R+ ++ A + K
Sbjct: 200 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----RSKKA 255
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G ++ N + +++
Sbjct: 256 CILFIDEVDAIGGSRGSESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVLM 305
Query: 282 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRT----DNVPKEDIVKLVDT 335
N TL L+R GR+++ + P E RI + RT N+ E + +L
Sbjct: 306 ATNRPDTLDPALLRPGRIDRKVEFGLPDLEGRIHIFKIHARTMSMDKNIRYEMLARLCPN 365
Query: 336 FPGQSIDFFG------ALRARVYDDEVRKWISEV----GIERIGK 370
G + A+RAR RK ISE IER+ K
Sbjct: 366 STGADLRSVCTEAGMFAIRAR------RKSISERDLIEAIERVIK 404
>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
Length = 371
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 38/241 (15%)
Query: 157 PLILGIWGGK--------GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
P + G W K G GK+ + + + I++ A EL + G+ +K+IR+
Sbjct: 146 PKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIREL 205
Query: 209 YREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
Y+ A++ C +FI++LDA G R + + V +++VNA L +L G
Sbjct: 206 YQRASE----NAPCIVFIDELDAIGLSREYQSLRGDV-SEVVNALL---------TELDG 251
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCSGIFRTDNVP- 325
+ +EN V I N+ + L P IR E+ + P E+R+ + + +P
Sbjct: 252 I---KENEGVVTIAATNNPAML-DPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPIPV 307
Query: 326 KEDIVKLVDT---FPGQSI--DFFG-ALRARVYDDEVRKWISEVGIERIGKRLV-NSKEG 378
K ++ + V+ F G+ I F AL + +D R +IS+ +E K++V N +E
Sbjct: 308 KANLKEFVEKTKGFSGRDIKEKFLKPALHKAILED--RDYISKEDLEWALKKIVSNRREA 365
Query: 379 P 379
P
Sbjct: 366 P 366
>gi|448593337|ref|ZP_21652335.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445730245|gb|ELZ81835.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 412
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VIIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGEIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|448323197|ref|ZP_21512661.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
gi|445600383|gb|ELY54396.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
Length = 742
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|86609273|ref|YP_478035.1| ATPase AAA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557815|gb|ABD02772.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 513
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LPN K L++GI +G GKS + + + + + + AG L +G GE +RQ +
Sbjct: 256 LPNPKGVLLVGI---QGTGKSLSAKTIANEWRLPLLRLDAGRLFAGIVGESESRVRQMIQ 312
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG--- 267
A + C L+I+++D G N T D+ T+ ++ G
Sbjct: 313 LAEAMAP----CVLWIDEIDKAFG---------------NITSSADGDSGTSRRVFGSLI 353
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
+ QE+ V I+ T N+ L L+R GR ++ ++ PT +R
Sbjct: 354 TWMQEKTSPVFIVATANNVPLLPPELLRKGRFDEIFFLNLPTHAER 399
>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289596082|ref|YP_003482778.1| ATPase AAA [Aciduliprofundum boonei T469]
gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 24/188 (12%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GL + L + P K+ H+ VK+P + ++G G GK+ + V
Sbjct: 459 GLEQVKQELREVVEWPMKYRKLFAHM--------KVKIPKGILLYGPPGTGKTLLAKAVA 510
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+ N I + E S GE K +R+ +R+A ++ +FI+++DA A G
Sbjct: 511 TESEANFISVKGPEFLSKWVGESEKAVREVFRKA----RQAAPAVIFIDEIDAIAPMRGR 566
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
V ++V+ L M EE V +I N L L+R GR
Sbjct: 567 DIGSHVTERVVSQILTE------------MDGLEELHNVTVIAATNRPDILDPALLRPGR 614
Query: 299 MEKFYWAP 306
++ + P
Sbjct: 615 FDRIVYVP 622
>gi|331219784|ref|XP_003322568.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309301558|gb|EFP78149.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 393
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLAKAVANTLSTNFLKVVSSAIVDKYIGESARLIREMFAYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R + + + + I + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALMRPGRLDRKIEIPLPNEVARMEILKIHATPIQKQGEIDYE 333
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 334 SIVKLAEGFNGADL 347
>gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica]
gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica CLIB122]
Length = 845
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 46/260 (17%)
Query: 137 MDKVVVHITKNFL---NLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187
++KV+ ITK+ L P V +P + + G G GK+ + K + +
Sbjct: 213 IEKVIEQITKSVLVPLTHPEVYKTTGLTMPRGVLLHGPPGCGKTVLANAIANKAQVPFMS 272
Query: 188 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
+SA + SG +GE K IR+ + EA I C LFI+++DA + G + + +
Sbjct: 273 ISAPSVVSGMSGESEKKIREIFEEARAIAP----CLLFIDEIDAVTPKREGGGR-GMETR 327
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRM--EKFY 303
+V L I D N E+N P+IV G N + L R GR E
Sbjct: 328 IVAQLLTCIDD----------LNPEKNDFRPVIVLGATNRPDAIDPALRRPGRFDEEIAM 377
Query: 304 WAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDF-FGALRARVY-DDEVRKWIS 361
P R+ R + I R +KL D IDF A+R Y +++ ++
Sbjct: 378 AVPDRKSRELILKAITRP--------LKLND-----DIDFELLAMRTPGYVAADLKALVT 424
Query: 362 EVG---IERIGKRLVNSKEG 378
G +ER K+LV +KE
Sbjct: 425 AAGSMALERAFKQLVENKEA 444
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
+ + V P + +WG G GK+ + V ++ N I + EL + GE + IR
Sbjct: 592 DLFKMVGVDAPGGVLLWGPPGCGKTLLAKAVASETAANFISVRGPELLNKYVGESERAIR 651
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRM--GGTTQYTVNNQMVNATLMNIADNPTNVQ 264
Q + AA C +F ++ D+ A R GG+ ++++VN L +
Sbjct: 652 QVFERAA----LSSPCIIFFDEFDSLAPRRDDGGSEH---SSRLVNTLL---------TE 695
Query: 265 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR 320
L G+ E V +I N + ++R GR++K F P +R + S + R
Sbjct: 696 LNGLT---ERRGVYVIAATNRPDIIDPAMVRPGRLDKTLFVGLPDENERFEILSKVCR 750
>gi|448730944|ref|ZP_21713247.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
gi|445792538|gb|EMA43139.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
Length = 405
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 24/225 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + + G G GK+ + V I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANGTDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + + +FI++LDA A + T T + V T+M + L M +E
Sbjct: 238 ELANEHEPAVIFIDELDAVAAKR--TDSKTSGDAEVQRTMMQL--------LNEMDGFDE 287
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 327
V II N F L ++R GR ++ P RE + + G D+V E
Sbjct: 288 RGDVSIIAATNRFDMLDPAILRPGRFDRLIEVPEPDAEGREQIFQIHTRGTTLADDVDFE 347
Query: 328 DIVKLVDTFPGQSIDFF----GALRARVYDDEVRKWISEVGIERI 368
++ +L G I+ G R EVR E +E+I
Sbjct: 348 ELAELTAGRSGAEIESLATEAGMFAIRDDRTEVRMADFEAALEKI 392
>gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|374105627|gb|AEY94538.1| FAAL113Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IQSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNL-- 313
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
+ +I+ N TL L+R GR+++
Sbjct: 314 -GQTKVIMATNRPDTLDPALLRPGRLDR 340
>gi|410671645|ref|YP_006924016.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
gi|409170773|gb|AFV24648.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
Length = 412
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 48/317 (15%)
Query: 17 LKINGSS-RFSLVPSSVFLGKSLKKVSSKVSQQ--RILSKSFKVVSEYDEEKQTSQDRWA 73
LK+N + R L+ +S+ L + SSK+ +Q ++ + S + EK + R
Sbjct: 41 LKVNNENMRAKLLEASMMANTYLDE-SSKLKKQIEQLTRPPLFIASVMEVEKDMALIRQH 99
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLD--NTLDGLY 131
G ++Q+ +T+ + T FQ +++G V +++ +S R D + L
Sbjct: 100 G------NNQEVVTK----IPTHFQGEIQAGMRVCVNAAFSIVSIISRAADVRAQVMELI 149
Query: 132 IAPAF-------MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQGKSFQC 174
+P +D V+ + ++ + LP ++ P + ++G G GK+
Sbjct: 150 TSPGIDYDMIGGLDDVLKEVIES-VELPLTEPELFERIGIEPPTGVLLYGAPGTGKTLIA 208
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
+ V ++ I MS +L GE A+L++ ++ A D LFI+++DA G
Sbjct: 209 KAVASRAQATFIRMSGSDLIQKFVGEGARLVKDVFQMARD----KAPTILFIDEIDAVGG 264
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
T T + VN T++ + L M + V II N L L+
Sbjct: 265 MR--THDGTTGSAEVNRTMLQL--------LAEMDGFDATNNVKIIAATNRIDLLDPALL 314
Query: 295 RDGRMEKFYWAPTREDR 311
R GR ++ P +++
Sbjct: 315 RPGRFDRVIEVPLPDEK 331
>gi|354610211|ref|ZP_09028167.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
gi|353195031|gb|EHB60533.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
Length = 411
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + V + I M+ EL GE ++L+R + E A
Sbjct: 183 VEPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGSRLVRDLF-ELA 241
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + + +FI+++DA A + T T + V T+M + L M +E
Sbjct: 242 D---QNEPAIIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 288
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFR-TDNVPKE 327
V II N F L + ++R GR ++ P RE + + +G ++V
Sbjct: 289 RGDVRIIAATNRFDMLDSAILRPGRFDRLIEVPHPEVEARERILEIHAGEMNVAEDVDFS 348
Query: 328 DIVKLVDTFPGQSI 341
D+ + D F G +
Sbjct: 349 DLAEQTDGFSGAQL 362
>gi|448358955|ref|ZP_21547627.1| ATPase AAA [Natrialba chahannaoensis JCM 10990]
gi|445644243|gb|ELY97260.1| ATPase AAA [Natrialba chahannaoensis JCM 10990]
Length = 742
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|126659176|ref|ZP_01730315.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
gi|126619583|gb|EAZ90313.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
Length = 530
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
+PN K L+ GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 270 IPNPKGVLLAGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 326
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
A I C L+I+++D G + G + ++ V +L+ +
Sbjct: 327 IAEAIAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 369
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R
Sbjct: 370 MQEKTSPVFIVATANNVKILPAELLRKGRFDEIFFLNLPTAKER 413
>gi|146302995|ref|YP_001190311.1| AAA ATPase [Metallosphaera sedula DSM 5348]
gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
Length = 768
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
++ V+ P + ++G G GK+ + V + G N I + E+ S GE + IR
Sbjct: 488 DYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIR 547
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
+ +R+A + +F +++DA A G ++ V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAIAPMRGISSDSGVTERLVNQLL---------AEMD 594
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLMYVP 631
>gi|443709650|gb|ELU04242.1| hypothetical protein CAPTEDRAFT_149757 [Capitella teleta]
Length = 393
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 32/232 (13%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+ + +R L ++ + P ++V + K L ++G G GK+
Sbjct: 142 LGEQIRELREVIELPLLNPELFERVGITPPKGCL------------LYGPPGTGKTLLAR 189
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A+LIR+ + A D + C +F++++DA GR
Sbjct: 190 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGR 245
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + G +V +I+ N TL L+R
Sbjct: 246 R--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKMIMATNRPDTLDPALLR 295
Query: 296 DGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 341
GR+++ P + R+ + I + + E +VKL D F G +
Sbjct: 296 PGRLDRKIEISLPNEQARMEIMKIHAGPIAKHGEIDWEAVVKLSDDFNGADL 347
>gi|390357797|ref|XP_797089.3| PREDICTED: peroxisome biogenesis factor 1-like [Strongylocentrotus
purpuratus]
Length = 1533
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 219
L ++G G GK+ +V + G+N I + EL S G + +R + A
Sbjct: 1057 LLLYGPPGTGKTLLGGVVAKECGLNFISIKGPELLSKYIGASEQSVRDLFTRAM----SA 1112
Query: 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
K C LF ++ D+ A R G + V +++VN L QL G+ E V +
Sbjct: 1113 KPCILFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQLDGVEGLE---GVYV 1159
Query: 280 IVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPKEDIVKLV 333
I + + L+R GR++K F PT E+R+ + + R NV I K +
Sbjct: 1160 IGATSRPDLIDPALLRPGRLDKCLFCPIPTAEERVEILQALARKMTLRSNVDLAAIAKKL 1219
Query: 334 DTFPGQSIDFFGALRARVYDDEV 356
D F G L+A +Y+ ++
Sbjct: 1220 DHFTG------ADLKALLYNAQL 1236
>gi|290987216|ref|XP_002676319.1| proteasome subunit [Naegleria gruberi]
gi|284089920|gb|EFC43575.1| proteasome subunit [Naegleria gruberi]
Length = 394
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + A + GE A++IR+ + A
Sbjct: 169 IKAPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVASAIVDKYIGESARIIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA G+ ++ T ++ + TLM + + QL G +N +
Sbjct: 229 D----HQPCIIFMDEIDAIGGKR--FSEGTSADREIQRTLMELLN-----QLDG-FN--D 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 327
+V I+ N L L+R GR+++ P + R+ + I + + E
Sbjct: 275 VGQVKFIMATNRPDVLDTALMRPGRLDRKIEISLPNEQGRLSILKIHSRSITKHGEIDYE 334
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 335 AIVKLSDGFNGADL 348
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 138 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196
D V++ +T+ + L NV+ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 179 DLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSG 238
Query: 197 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
+GE K +R+ + EA K+ C +FI+++DA + +Q + ++V A L+
Sbjct: 239 MSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ENSQREMEKRIV-AQLLTC 292
Query: 257 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 301
D+ E+ P+IV N +L A L R GR +K
Sbjct: 293 MDD---------LALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDK 330
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 500 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 559
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F ++LDA R T + ++VN L + ++ Q G+Y
Sbjct: 560 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 608
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 330
+I N + ++R GR+E + P+ +R+ + + R + ED+
Sbjct: 609 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 663
Query: 331 KLVDTFPGQS-IDFFGALRARVYD 353
+L + G S D LR Y+
Sbjct: 664 RLAEECEGFSGADLTSLLRRAGYN 687
>gi|258577759|ref|XP_002543061.1| ATPase [Uncinocarpus reesii 1704]
gi|237903327|gb|EEP77728.1| ATPase [Uncinocarpus reesii 1704]
Length = 751
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEVLSMYVGESERALREIFRKA----RAARP 579
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F +++DA AGR G Q VN V TL+N D EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGQQSGVN---VLTTLLNEMD-----------GIEELKNVLVVA 625
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE 327
N TL L+R GR++ + P E R + F +V E
Sbjct: 626 ATNKPDTLDPALMRPGRLDNILYIGLPDMEARKEILDIWFAKSDVHDE 673
>gi|347738276|ref|ZP_08869829.1| ATP-dependent Zn protease [Azospirillum amazonense Y2]
gi|346918743|gb|EGY00588.1| ATP-dependent Zn protease [Azospirillum amazonense Y2]
Length = 745
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 164 GGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEPAKLIRQRYREAADIIKKGKMC 222
G G GK+ Q + A+ GI I S G +S G+ G+ + + + +AA + K+C
Sbjct: 344 GPPGVGKTQQLITLAARSGIPLISTSHGRWQSAGHQGDMLAAMARTFEDAA----RQKLC 399
Query: 223 CLFINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+F+++LDA GR G + + N+Q++N + + D R II
Sbjct: 400 LVFVDELDAFLARGRGGNPSHESYNHQVMN-FFLELLDGAAG-------------RTGII 445
Query: 281 VTG--NDFSTLYAPLIRDGRMEK 301
V G N L LIR GRME+
Sbjct: 446 VVGACNFVERLDPALIRPGRMER 468
>gi|448315080|ref|ZP_21504733.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
gi|445612339|gb|ELY66065.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
Length = 742
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
Length = 580
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + EL + GE + +RQ + A +
Sbjct: 352 LYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERAVRQLFARA----RAAHP 407
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LF ++LDA A R G T NNQ A+ N L M + + I+
Sbjct: 408 CVLFFDELDALAPRRG-----TDNNQA--------AERVVNQLLTEMDGVDSRQGLFIVA 454
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N + L+R GR+EK + P
Sbjct: 455 ATNRPDMIDPALLRPGRLEKVLYVP 479
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 150 NLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
+LP+V+V LG+ G G GK+ + + G+ + +SA E+ SG +GE
Sbjct: 1 HLPHVQVYAWLGVEPPRGVLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGES 60
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDA 231
+RQ + EA ++ C +FI+++DA
Sbjct: 61 EAKLRQLFNEARELAP----CIVFIDEIDA 86
>gi|452206535|ref|YP_007486657.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
gi|452082635|emb|CCQ35898.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
Length = 404
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQQEP 242
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M E+ ++ II
Sbjct: 243 AVVFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LAEMDGFEDRGQISIIA 292
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|407921499|gb|EKG14641.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 394
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 227
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 228 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P R+ + G+ + E
Sbjct: 277 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHAGGVQTEGEIDFE 334
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D F G +
Sbjct: 335 SIVKMSDGFNGADL 348
>gi|291000128|ref|XP_002682631.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi]
gi|284096259|gb|EFC49887.1| peroxisomal biogenesis aaa ATPase Pex1 [Naegleria gruberi]
Length = 818
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GL+ + N L +I P + F N P +K+ L ++G G GK+F +
Sbjct: 468 GLQDVKNILRETFIFPTKYASL-------FENAP-IKLRSGLLLYGPPGSGKTFIASAIA 519
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+ G+N I + EL + G + +R + +A + K C +F ++ D+ A + G
Sbjct: 520 KECGLNFISIKGPELLNKYVGASEQAVRDVFMQA----ESAKPCIIFFDEFDSIAAQRGH 575
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
V +++VN L QL G+ E V ++ + + A L+R GR
Sbjct: 576 DNT-GVTDRVVNQFL---------CQLDGV---ESRKGVYVLAATSRPDLIDAALLRPGR 622
Query: 299 MEKFYWA--PTREDR 311
++K PT E+R
Sbjct: 623 LDKSVCCNIPTEEER 637
>gi|289579864|ref|YP_003478330.1| ATPase AAA [Natrialba magadii ATCC 43099]
gi|448281105|ref|ZP_21472413.1| ATPase AAA [Natrialba magadii ATCC 43099]
gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
gi|445579429|gb|ELY33823.1| ATPase AAA [Natrialba magadii ATCC 43099]
Length = 742
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|399578914|ref|ZP_10772658.1| ATPase AAA [Halogranum salarium B-1]
gi|399235940|gb|EJN56880.1| ATPase AAA [Halogranum salarium B-1]
Length = 270
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N+ P + + G G GK+ + ++G + +SAG+++S E + + Q +REA
Sbjct: 66 NISPPNGILLHGPPGTGKTHFARAIAGELGHPYLELSAGDIKSRWINESTEKVNQLFREA 125
Query: 213 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
A + C +FI+++DA AGR + + + Q+VN L ++ D
Sbjct: 126 AQFDR----CVIFIDEIDALLAGR--DSDLHREHAQVVNEFLAHLDD------------- 166
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
E+P +I N L R GR ++ Y
Sbjct: 167 -EDPNFLVIAATNRVDLLDEAATRRGRFDQQY 197
>gi|448352560|ref|ZP_21541343.1| ATPase AAA [Natrialba hulunbeirensis JCM 10989]
gi|445642622|gb|ELY95689.1| ATPase AAA [Natrialba hulunbeirensis JCM 10989]
Length = 742
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|224138416|ref|XP_002326597.1| predicted protein [Populus trichocarpa]
gi|222833919|gb|EEE72396.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + G + I++S + +AGE +++R+ + +A
Sbjct: 71 LKWPTGLLLYGPPGTGKTSLVRAVVRECGAHLIVISPHFVHRAHAGESERVLREAFSDAL 130
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
GK +FI+++DA R + V LM+ A+ P++
Sbjct: 131 SHAVAGKPSVIFIDEIDALCHRRDSRREQDVRVASQLFALMD-ANKPSSTS--------- 180
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 314
+ +V +I + N + L R GR E PT E+R+ +
Sbjct: 181 SAQVVVIASTNRVDAIDPALRRSGRFDAEIEVTTPTEEERLQI 223
>gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial
[Macaca mulatta]
Length = 352
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL L+R GR+++
Sbjct: 292 ATNRPDTLDPALLRPGRLDR 311
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 138 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196
D V++ +T+ + L NV+ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 78 DLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSG 137
Query: 197 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
+GE K +R+ + EA K+ C +FI+++DA + +Q + ++V A L+
Sbjct: 138 MSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ENSQREMEKRIV-AQLLTC 191
Query: 257 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 301
D+ E+ P+IV N +L A L R GR +K
Sbjct: 192 MDD---------LALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDK 229
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 399 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 458
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F ++LDA R T + ++VN L + ++ Q G+Y
Sbjct: 459 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 507
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 330
+I N + ++R GR+E + P+ +R+ + + R + ED+
Sbjct: 508 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 562
Query: 331 KLVDTFPGQS-IDFFGALRARVYD 353
+L + G S D LR Y+
Sbjct: 563 RLAEECEGFSGADLTSLLRRAGYN 586
>gi|392565358|gb|EIW58535.1| ATPase [Trametes versicolor FP-101664 SS1]
Length = 400
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 327
R +I+ N TL L+R GR+++ P R + + + S + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEMDYE 341
Query: 328 DIVKLVDTFPGQSI 341
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|116192555|ref|XP_001222090.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
gi|88181908|gb|EAQ89376.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
Length = 391
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVSKDGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|344345580|ref|ZP_08776427.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
gi|343802848|gb|EGV20767.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
Length = 506
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
L+LG+ GG GKS + V + G+ + + L GE K +RQ R A +
Sbjct: 277 LLLGVQGG---GKSLAAKAVAGRFGVALLRLDFATLYDKYIGETEKNLRQALRTAEVMAP 333
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C L+I++++ G G+ V +++ L +A E RV
Sbjct: 334 ----CVLWIDEIEKGLA--SGSGDDGVGRRVLGTLLTWMA--------------ERRARV 373
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYW 304
++ T ND S L L+R GR+++ ++
Sbjct: 374 FLVATANDVSRLPPELLRKGRIDELFF 400
>gi|158337877|ref|YP_001519053.1| hypothetical protein AM1_4763 [Acaryochloris marina MBIC11017]
gi|158308118|gb|ABW29735.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 507
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D + G +++ + +A
Sbjct: 309 QMIQLSEALAPCILWIDEIDKAFAGIDGRGDSGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 325
E+ V ++ T N+ +L ++R GR ++ ++ PT+E+R + S R N+
Sbjct: 356 -EKTSPVFVVATANNIQSLPPEMLRKGRFDEIFFVGLPTKEEREAIFSVHLSRLRPHNLN 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
+ D+ +L P DF GA
Sbjct: 415 QYDLQRLAYETP----DFSGA 431
>gi|255316594|ref|ZP_05358177.1| ATP-dependent metallopeptidase HflB [Clostridium difficile
QCD-76w55]
gi|384359090|ref|YP_006196945.1| putative cell division protease FtsH-like protein [Clostridium
difficile BI1]
Length = 577
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G+ ++ + G AK +R+ + EA KK
Sbjct: 181 LYGPPGTGKTLIAKAVAGEAGVPFFSINGSDFIELYVGLGAKRVRELFEEA----KKKAP 236
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
LFI+++D+ G+ G + + + Q +NA L ++ G E + I+
Sbjct: 237 AILFIDEIDSIGGKRGCSGENSEQRQTINALL---------AEIDGFDGSE---GIFILC 284
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP---TREDRIGV 314
N L LIR GR +K P T EDR+ +
Sbjct: 285 ATNRLEDLDGALIRPGRFDKHISIPLPETSEDRLNI 320
>gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia
strain d4-2]
gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium
tetraurelia]
gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia]
Length = 632
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + +WG G GK+ + V N I + E+ + GE K IR + A
Sbjct: 404 VRPPAGVLLWGPPGCGKTLLAKAVANASRANFIAVKGPEILNKYVGESEKAIRGLFTRA- 462
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ + C +F +++DA G V ++VN L +L G E+
Sbjct: 463 ---RASQPCIIFFDEIDAICPVRGNEGGGQVTERVVNQLL---------TELDGF---ED 507
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTDNVPKED 328
+V II N L ++R GR++K + P RED + + D+V ++
Sbjct: 508 RKQVFIIAASNRPDILDPAILRPGRIDKPLYVPLPDESGREDILRTLAKKSPIDDVDFKE 567
Query: 329 IVKLVDTFPG 338
+ K + F G
Sbjct: 568 LAKRCENFTG 577
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 44/225 (19%)
Query: 162 IWGGKGQGKSFQ----CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217
+ G G GK++ C ++ + +N M + E+ + +GE K IRQ +++AA
Sbjct: 150 LTGATGCGKTYLAKAICRDLYQQFKLNIFMKNGAEIVASLSGESEKNIRQLFQQAA---- 205
Query: 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
+ +FI+D+D AG + N QM + Q+ G +Q N V
Sbjct: 206 QEAPSLVFIDDIDVIAG-----DRDKANKQMEKRVV---------TQIMGSLDQLPN-NV 250
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDIV-KLVD 334
+I T + L L R GR +K PT E R EDI+ KL+
Sbjct: 251 FLIATTSHPDQLDPALRRSGRFDKEIMITVPTDEQR---------------EDILKKLIK 295
Query: 335 TFPGQSIDFFGALRAR--VYDDEVRKWISEVGIERIGKRLVNSKE 377
+IDF+ R ++ E +E + KRL++S+E
Sbjct: 296 PLKVNNIDFYSLSRRTPGYVASDLFSLSKEAAVEAV-KRLISSEE 339
>gi|340546049|gb|AEK51823.1| proteasome 26S ATPase subunit 6 [Alligator mississippiensis]
gi|402697414|gb|AFQ90895.1| proteasome 26S subunit ATPase 6, partial [Chrysemys picta]
gi|402697420|gb|AFQ90898.1| proteasome 26S subunit ATPase 6, partial [Testudo hermanni]
Length = 217
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL L+R GR+++
Sbjct: 182 ATNRPDTLDPALLRPGRLDR 201
>gi|337283587|ref|YP_004623061.1| cell division protein CDC48 [Pyrococcus yayanosii CH1]
gi|334899521|gb|AEH23789.1| cell division protein CDC48 [Pyrococcus yayanosii CH1]
Length = 796
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 611
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R GT V ++++N L ++ G+ EN V +I
Sbjct: 612 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLL---------TEMDGIV---ENSGVVVIA 658
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR--TDNVP------KEDIVKLV 333
N + L+R GR ++ P ++R + IFR T N+P E++ K
Sbjct: 659 ATNRPDIIDPALLRPGRFDRLILVPAPDERARLE--IFRVHTRNMPLAKDVNLEELAKRT 716
Query: 334 DTFPGQSI 341
+ + G I
Sbjct: 717 EGYTGADI 724
>gi|359462169|ref|ZP_09250732.1| hypothetical protein ACCM5_25806 [Acaryochloris sp. CCMEE 5410]
Length = 507
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D + G +++ + +A
Sbjct: 309 QMIQLSEALAPCILWIDEIDKAFAGIDGRGDSGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 325
E+ V ++ T N+ +L ++R GR ++ ++ PT+E+R + S R N+
Sbjct: 356 -EKTSPVFVVATANNIQSLPPEMLRKGRFDEIFFVGLPTKEEREAIFSVHLSRLRPHNLN 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
+ D+ +L P DF GA
Sbjct: 415 QYDLQRLAYETP----DFSGA 431
>gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes
aegypti]
gi|108884684|gb|EAT48909.1| AAEL000081-PA, partial [Aedes aegypti]
Length = 940
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 137 MDKVVVHITKNFLNLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMM 188
MDK++ + + L++ + +V +G+ G G GK+ + ++ I I +
Sbjct: 239 MDKILRDLCELLLHVKHPEVYRHVGLPPPRGFLLHGPPGSGKTLLAHAIAGQLKIGLIEI 298
Query: 189 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQ 247
A EL +G +GE + IR+ + +AA + C LFI+++DA A R+ Q + +
Sbjct: 299 PATELVAGVSGESEERIREVFEQAAVL----SPCVLFIDEIDAISANRVNA--QKDMERR 352
Query: 248 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWA 305
+V A L++ DN LP + E V +I N L L R GR ++
Sbjct: 353 IV-AQLLSSLDN-----LPKL---EGGDGVLVIGATNRPDALDPALRRVGRFDQEISLGI 403
Query: 306 PTREDRIG----VCSGIFRTDNVPKEDIVKLVDTFPG 338
P RE R +C + +N+ +++ KL + G
Sbjct: 404 PDREARAQILKIICKNLKIEENIDFDELAKLTPGYVG 440
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 27/209 (12%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
L L + P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 682 LKLLGLSSPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRQC 741
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
++ A + C +F ++ D+ + +++ + ++VN L M
Sbjct: 742 FQRA----RNSTPCVIFFDEFDSLCPKRSDSSEGSAGMRVVNQLLTE------------M 785
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR------ 320
E+ V ++ N + ++R GR++K + P EDR+ + + +
Sbjct: 786 DGIEDRKGVFLMAATNRPDIVDPAVLRPGRLDKILYVGLPAEEDRVDILRALTKNRTQPP 845
Query: 321 -TDNVPKEDIVKLVDTFPGQSIDFFGALR 348
D+V + +L + + G D G +R
Sbjct: 846 LADDVDLSVVARLTEGYTG--ADLAGLVR 872
>gi|353236288|emb|CCA68286.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Piriformospora indica
DSM 11827]
Length = 735
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 102/227 (44%), Gaps = 31/227 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + N I + EL + GE + +RQ + A +
Sbjct: 477 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERALRQVFSRA----RASSP 532
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F ++LDA R + + + ++VN L +L G+ +++ V +I
Sbjct: 533 CIIFFDELDALVPRRDDSLSES-SARVVNTLL---------TELDGLDSRKG---VHVIA 579
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVK--LVDTFP 337
N + + R GR++K + PT ++R+ + + R + ++++V+ ++D
Sbjct: 580 ATNRPDMIDPAMCRPGRLDKLLYVDLPTPDERVEIFKALARRLPIQEDELVQAAILDFVH 639
Query: 338 GQSID-FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 383
G+ + F GA ++ + E G+ + +R + + E P F+
Sbjct: 640 GERFEGFSGA--------DLAALVREAGVTSL-RRTITAWESVPVFQ 677
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 129 VQPPRGVLLHGPPGCGKTLLANAIAGELQVPFISISAPSIVSGMSGESEKTLRETFEEA- 187
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
KK C LFI+++DA + + Q + ++V A + D+ + +++ +
Sbjct: 188 ---KKNAPCILFIDEIDAITPKR-ESAQREMERRIV-AQFLTCMDDLS-------WDKTD 235
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRME 300
+ V II N +L A L R GR +
Sbjct: 236 DKAVMIIGATNRPDSLDAALRRAGRFD 262
>gi|448617268|ref|ZP_21665923.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|445748617|gb|EMA00064.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 412
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGEIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|383318695|ref|YP_005379536.1| proteasome-activating nucleotidase [Methanocella conradii HZ254]
gi|379320065|gb|AFC99017.1| Proteasome-activating nucleotidase [Methanocella conradii HZ254]
Length = 410
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V I MS EL GE A+L+R ++ A
Sbjct: 184 IEAPRGVLLYGPPGTGKTLLAKAVAHASKATFIRMSGSELVHKFIGEGAQLVRDLFQMAR 243
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D +FI++LDA GR T T + VN T+M + L M E
Sbjct: 244 D----KAPSIIFIDELDAVGGRR--THDGTTGSAEVNRTMMQL--------LSEMDGFSE 289
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
V I+ N L ++R GR ++ P
Sbjct: 290 RGNVRIMAATNRIDMLDPAILRPGRFDRIIEIP 322
>gi|410084383|ref|XP_003959768.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
gi|372466361|emb|CCF60633.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
Length = 794
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 523 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFARAR 582
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
I C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 583 ASIP----CIIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 623
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P E+++ + + R++ P +
Sbjct: 624 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDIFKTLIRSNGTPIAND 683
Query: 330 VKL 332
V L
Sbjct: 684 VDL 686
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + ++ + I +SA + SG +GE K +R ++EA I
Sbjct: 222 LHGPPGCGKTTIANALAGELNVPFINISAPSIVSGMSGESEKKLRDVFQEAKSIAP---- 277
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++DA + G Q + ++V A L+ D T E P+IV
Sbjct: 278 CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELT---------MEHTDGKPVIV 327
Query: 282 TG--NDFSTLYAPLIRDGRMEK 301
G N L + L R GR ++
Sbjct: 328 IGATNRPDALDSALRRAGRFDR 349
>gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
gi|343484290|dbj|BAJ49944.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
Length = 726
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P + ++G G GK+ + V + N I + E+ S GE K +R+ +R+A
Sbjct: 489 IRPPRGILLYGPPGTGKTLLAKAVATESQANFISVKGPEVLSKWVGESEKAVREIFRKA- 547
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F ++LD+ A R G T V +++VN L ++ GM + +
Sbjct: 548 ---RETAPCIIFFDELDSIAPRRGIHTDAGVTDRIVNQLL---------TEMDGMQSLKG 595
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
V ++ N L L+R GR ++ + P
Sbjct: 596 ---VVVLGATNRPDILDPALLRPGRFDRVLYVP 625
>gi|238488034|ref|XP_002375255.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
gi|220700134|gb|EED56473.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
Length = 413
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLEGDIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|301122253|ref|XP_002908853.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
gi|262099615|gb|EEY57667.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
Length = 394
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + + A + GE A++IR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
D + C +F++++DA +GG+ ++ T ++ + TLM + + QL G
Sbjct: 229 D----HQPCVIFMDEIDA----IGGSRYSEGTSADREIQRTLMELLN-----QLDGF--- 272
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVP 325
+ +V +++ N L L+R GR+++ P +R D + + SG I + +
Sbjct: 273 DALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEID 332
Query: 326 KEDIVKLVDTFPG 338
E IVKL D F G
Sbjct: 333 YESIVKLTDGFNG 345
>gi|443922351|gb|ELU41808.1| AAA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 410
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 125 NTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 184
+T+ ++ A + H + L +K P + ++G G GK+ + +
Sbjct: 234 STVPSIWCATLDQLGLACHSRHVMVFLAGLKPPKGILLYGPPGTGKTHLARAIARSTNAS 293
Query: 185 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM---GGTTQ 241
+ +S EL S GE +R + EA +K C + ++++DA + GG
Sbjct: 294 LVAVSGAELASAYHGETEARLRAVFAEA----RKQSPCIIVLDEVDAMCPQREEGGGVEA 349
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
TV + ++ AD+ N + Q PR+ ++ T N + + L R GR ++
Sbjct: 350 RTVATLLTELDGIDTADHGGNA-----HEQRRQPRIVVVATTNRPNAIDPALRRPGRFDR 404
>gi|432330935|ref|YP_007249078.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
gi|432137644|gb|AGB02571.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
Length = 436
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LHGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFENRGDVKII 321
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAP 306
N L L+R GR ++ P
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIP 347
>gi|348676254|gb|EGZ16072.1| hypothetical protein PHYSODRAFT_354854 [Phytophthora sojae]
Length = 394
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + + A + GE A++IR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYAR 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
D + C +F++++DA +GG+ ++ T ++ + TLM + + QL G
Sbjct: 229 D----HQPCVIFMDEIDA----IGGSRYSEGTSADREIQRTLMELLN-----QLDGF--- 272
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVP 325
+ +V +++ N L L+R GR+++ P +R D + + SG I + +
Sbjct: 273 DALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEID 332
Query: 326 KEDIVKLVDTFPG 338
E IVKL D F G
Sbjct: 333 YESIVKLTDGFNG 345
>gi|389847491|ref|YP_006349730.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|388244797|gb|AFK19743.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 394
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 173 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 228
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 229 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGEIRIIA 278
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 279 ATNRFDMLDEAILRPGRFDRLIEVP 303
>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 398
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 38/231 (16%)
Query: 128 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQGKSFQCEL 176
D Y +DK + I K + LP VK P + LGI +G G GK+
Sbjct: 137 DSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 194
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLFINDLDA-G 232
V I +S EL GE A+++R+ + RE A I +F++++D+ G
Sbjct: 195 VAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIG 247
Query: 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292
+ R+ T Q L+N QL G E + +I+ N L +
Sbjct: 248 STRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATNRIDILDSA 296
Query: 293 LIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQS 340
L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S
Sbjct: 297 LLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS 347
>gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum]
Length = 742
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>gi|396457806|ref|XP_003833516.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
gi|312210064|emb|CBX90151.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
Length = 393
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 327
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
Length = 770
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 145 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 204
+++F NL V P + ++G G K+ + + + G+N + + E+ + GE +
Sbjct: 528 SQSFANL-GVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERT 586
Query: 205 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 264
IR+ +R+A + +F +++DA AG G + T + ++ +L+N D
Sbjct: 587 IREIFRKA----RAASPSIIFFDEIDAIAGDRDGDSSTTAASNVL-TSLLNEID------ 635
Query: 265 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD 322
EE V I+ N + + L+R GR+++ + P E R+ + R
Sbjct: 636 -----GVEELKGVVIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYEARLQILQKCTRNF 690
Query: 323 NVPKEDI--VKLVDTFPGQS 340
N+ K+++ KL D G S
Sbjct: 691 NLDKDEVALTKLADLTEGCS 710
>gi|218246552|ref|YP_002371923.1| ATPase AAA [Cyanothece sp. PCC 8801]
gi|257059591|ref|YP_003137479.1| AAA ATPase [Cyanothece sp. PCC 8802]
gi|218167030|gb|ACK65767.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8801]
gi|256589757|gb|ACV00644.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8802]
Length = 504
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFGGLVGESES----RTR 308
Query: 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 270
+ + + C L+I+++D G + G +++ + +A
Sbjct: 309 QMISLAEALSPCVLWIDEIDKAFGGVDGKGDSGTTSRVFGTFITWLA------------- 355
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 325
E+ V ++ T N+ L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKQSPVFVVATANNIQALPPEMLRKGRFDEIFFVGLPTQEEREAIFNVHLSRLRPHNLK 414
Query: 326 KEDIVKLVDTFPGQSIDFFGA 346
DI +L P DF GA
Sbjct: 415 SYDIKRLAYETP----DFSGA 431
>gi|448584749|ref|ZP_21647492.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|445727603|gb|ELZ79213.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
Length = 412
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|448290078|ref|ZP_21481234.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
gi|445580470|gb|ELY34849.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
Length = 436
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
K L + P + ++G G GK+ + V + + I M+ EL GE A+L+
Sbjct: 199 KTMLAXVGIDPPSGVLLYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLV 258
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R ++ AA + + +FI+++DA A + T T + V T+M + L
Sbjct: 259 RDLFKLAA----EREPVVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------L 304
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
M ++ + II N F L ++R GR ++ P
Sbjct: 305 SEMDGFDDRGDIRIIAATNRFDMLDEAILRPGRFDRLIEVP 345
>gi|302414582|ref|XP_003005123.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
gi|261356192|gb|EEY18620.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
Length = 361
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKIVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + +G+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVITDGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|432328549|ref|YP_007246693.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
gi|432135258|gb|AGB04527.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
Length = 728
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
GL ++ L + P K+ H+ VK+P + ++G G GK+ + V
Sbjct: 460 GLENVKQELREVVEWPLKYRKLFAHM--------KVKIPKGILLYGPPGTGKTLLAKAVA 511
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
+ N I + E S GE K +R+ +R+A ++ +FI+++DA A G
Sbjct: 512 TESEANFISVKGPEFLSKWVGESEKAVREVFRKA----RQAAPAVIFIDEIDAVAPVRGM 567
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
V ++V+ L M EE V +I N L L+R GR
Sbjct: 568 DLGTRVTERVVSQLLTE------------MDGLEELHNVTVIAATNRPDMLDPALLRPGR 615
Query: 299 MEKFYWAPT 307
++ + P
Sbjct: 616 FDRLIYVPV 624
>gi|320164654|gb|EFW41553.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
Length = 391
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + + + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASNIEASFLKVVSSSIVDKYIGESARLIREMFGYAR 225
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + + G
Sbjct: 226 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 327
+V +I+ N TL L+R GR+++ P R D + + S I + + +
Sbjct: 274 --KVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDILKIHSAAITKHGEIDWD 331
Query: 328 DIVKLVDTFPGQSI 341
++KL D F G +
Sbjct: 332 AVIKLSDGFNGADL 345
>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
Length = 702
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 281 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQAA-- 338
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
KK C +FI+++DA G+ + +N V TL N V+L G E+N
Sbjct: 339 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 383
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ +I N +L L+R GR++K P
Sbjct: 384 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 415
>gi|448570119|ref|ZP_21639113.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|448599574|ref|ZP_21655377.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
gi|445723420|gb|ELZ75062.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|445736247|gb|ELZ87791.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
Length = 378
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 157 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 212
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 213 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 262
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 263 ATNRFDMLDEAILRPGRFDRLIEVP 287
>gi|254572355|ref|XP_002493287.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
gi|238033085|emb|CAY71108.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
Length = 1121
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 31/199 (15%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A+ G+N I + E+ + G + +R+ + A + K
Sbjct: 802 LYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKP 857
Query: 222 CCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C LF ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R
Sbjct: 858 CILFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRP 909
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDT 335
+I + L+R GR++K P +DR+ + + R NV K V L +
Sbjct: 910 DLIDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SS 957
Query: 336 FPGQSIDFFGA-LRARVYD 353
G+ F GA L+A Y+
Sbjct: 958 VAGECSGFSGADLQALAYN 976
>gi|16081896|ref|NP_394300.1| ATPase [Thermoplasma acidophilum DSM 1728]
gi|11387127|sp|O05209.1|VAT_THEAC RecName: Full=VCP-like ATPase
gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum]
gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum]
Length = 745
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 121 RHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 180
R + T++ + P ++ + +K FL ++G G GK+ + V +
Sbjct: 477 REIKETVELPLLKPDVFKRLGIRPSKGFL------------LYGPPGVGKTLLAKAVATE 524
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 240
N I + E+ S GE K IR+ +++A K+ +F++++D+ A R G T+
Sbjct: 525 SNANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAPAIVFLDEIDSIAPRRGTTS 580
Query: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300
V ++VN L + L G+ E V +I N + L+R GR +
Sbjct: 581 DSGVTERIVNQLLTS---------LDGI---EVMNGVVVIGATNRPDIMDPALLRAGRFD 628
Query: 301 KFYW--APTREDRIGVCSGIFRTDNVP 325
K + P +E R+ + T N+P
Sbjct: 629 KLIYIPPPDKEARLSILK--VHTKNMP 653
>gi|448566798|ref|ZP_21637053.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|445713387|gb|ELZ65164.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
Length = 412
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1]
gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
salinarum R1]
gi|12229754|sp|Q9HPF0.1|CDCH_HALSA RecName: Full=Protein CdcH
gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1]
gi|167727419|emb|CAP14207.1| AAA-type ATPase (CDC48 subfamily) [Halobacterium salinarum R1]
Length = 742
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>gi|209882419|ref|XP_002142646.1| 26S proteasome regulatory subunit 7 [Cryptosporidium muris RN66]
gi|209558252|gb|EEA08297.1| 26S proteasome regulatory subunit 7, putative [Cryptosporidium
muris RN66]
Length = 431
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + I + EL GE A+++R+ +R A + K
Sbjct: 212 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFRLA----RSKKA 267
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G ++ N + +++
Sbjct: 268 CILFIDEVDAIGGARGEESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVLM 317
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL L+R GR+++
Sbjct: 318 ATNRPDTLDPALLRPGRLDR 337
>gi|448545073|ref|ZP_21625816.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|448547378|ref|ZP_21626856.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|445704591|gb|ELZ56503.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|445716389|gb|ELZ68133.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
Length = 378
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 157 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 212
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 213 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 262
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 263 ATNRFDMLDEAILRPGRFDRLIEVP 287
>gi|345006630|ref|YP_004809483.1| adenosinetriphosphatase [halophilic archaeon DL31]
gi|344322256|gb|AEN07110.1| Adenosinetriphosphatase [halophilic archaeon DL31]
Length = 756
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + + G G GK+ + + G+N + ++ EL GE K +R+ + A
Sbjct: 529 NTTPPTGVLLHGSPGTGKTLLARAIAGESGVNFLQVAGPELLDRYVGESEKAVRELFERA 588
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN---IADNPTNVQLPGMY 269
++ +F ++LDA G GG V ++V+ L +ADNP V L
Sbjct: 589 ----RQAAPSIVFFDELDAIGGERGGGNDSGVGERVVSQLLTELDRVADNPGIVTLAAT- 643
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
N + L+R GR E P
Sbjct: 644 --------------NRKGAIDPALLRPGRFESHVRVP 666
>gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo]
gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis]
Length = 425
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + I + EL GE A+L+R+ ++ A + K
Sbjct: 206 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----RSKKA 261
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFI+++DA G G + + + V T++ I + QL G ++ N + +I+
Sbjct: 262 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVIM 311
Query: 282 TGNDFSTLYAPLIRDGRMEK 301
N TL L+R GR+++
Sbjct: 312 ATNRPDTLDPALLRPGRIDR 331
>gi|346324585|gb|EGX94182.1| ribosome biogenesis ATPase RIX7 [Cordyceps militaris CM01]
Length = 732
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 25/194 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+WG G GK+ + V + + I+++ EL + GE + +R+ + A +
Sbjct: 493 LWGPPGCGKTLVAQAVANEAHASFILINGPELLNKYVGESERAVRELFARA----RSSTP 548
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LF ++ D+ A G + + ++VN L + + G+Y II
Sbjct: 549 CILFFDEFDSIAPSRNGGSGSEASTRVVNTLLTELDGAQARL---GVY---------IIA 596
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 339
T N + ++R GR+ + F P+ R+ + I+RT + E P +
Sbjct: 597 TTNRPDMIDEAMLRPGRLSQHIFIDLPSATQRVDILRTIYRTRHKAAEGDAHAAGLAPLE 656
Query: 340 SI-------DFFGA 346
I DF GA
Sbjct: 657 GIARDERCRDFSGA 670
>gi|448410689|ref|ZP_21575394.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
gi|445671725|gb|ELZ24312.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
Length = 729
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N P + + G G GK+ V + G+N I ++ EL GE K +R+ +
Sbjct: 504 NTDPPSGVLLHGPPGTGKTLLARAVAGESGVNFIRVAGPELMDRYVGESEKAVREVF--- 560
Query: 213 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 271
D ++ +F +++D GRM G V ++V+ L M +
Sbjct: 561 -DRARQTAPAIVFFDEIDGIAGGRMDGN---EVTERVVSQLLTE------------MDSA 604
Query: 272 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
ENP V +I N L L+R GR+E+ P
Sbjct: 605 AENPNVVVIAATNRRDMLDDALLRPGRLEQHVEVP 639
>gi|367006109|ref|XP_003687786.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
gi|357526091|emb|CCE65352.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
Length = 820
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 554 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 612
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 613 ---RASVPCVIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 654
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 329
N R I V G N + ++R GR++K F P ++++ + + I + + P +D
Sbjct: 655 NDRNGIFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNFQEKLDIINTITKVNGTPLDDS 714
Query: 330 VKL 332
V L
Sbjct: 715 VNL 717
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 225 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRELFDEAK 284
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F +++DA + G Q + ++V A L+ D + E+
Sbjct: 285 SLAP----CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTAMDE---------LSMEK 330
Query: 274 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 328
P+IV G N +L A L R GR ++ P R+ + + + E D
Sbjct: 331 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSEHLKIKGEID 390
Query: 329 IVKLVDTFPGQSIDFFGA-LRARV 351
+KL PG F GA L+A V
Sbjct: 391 YLKLAKLTPG----FVGADLKALV 410
>gi|77993700|gb|ABB13463.1| 26S proteasome subunit RPT6, partial [Schistosoma mansoni]
Length = 382
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 218
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 164 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 221
Query: 219 GKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
+F++++D+ G+ R+ T Q L+N QL G E +
Sbjct: 222 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNI 265
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVD 334
+I+ N L + L+R GR+++ + AP E R+ + R N+ ++ D+ KL +
Sbjct: 266 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAE 325
Query: 335 TFPGQS 340
+ PG S
Sbjct: 326 SMPGAS 331
>gi|83314741|ref|XP_730492.1| 26s protease regulatory subunit s10b [Plasmodium yoelii yoelii
17XNL]
gi|23490230|gb|EAA22057.1| 26s protease regulatory subunit s10b (p44) (conserved atpase domain
protein 44). [thirteen-lined ground squirrel]
[Plasmodium yoelii yoelii]
Length = 393
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
V II+ N L L+R GR+++ P
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIP 306
>gi|301756719|ref|XP_002914210.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
gi|281347245|gb|EFB22829.1| hypothetical protein PANDA_002073 [Ailuropoda melanoleuca]
Length = 389
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNLLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F+++++A GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEINAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPTTKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
Length = 738
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
NV+ P + + G G GK+ A++GI I +SA + SG +GE K +R+ + EA
Sbjct: 202 NVQPPRGVLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEA 261
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ C +FI+++DA + + Q + ++V A L+ D+ ++
Sbjct: 262 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIV-AQLLTCMDDLA-------LDKT 308
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
+ V ++ N +L A L R GR +K
Sbjct: 309 DGKPVIVLAATNRPDSLDAALRRGGRFDK 337
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 509 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 568
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA R T + ++VN L +L G+ + +
Sbjct: 569 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLL---------TELDGLGSSRQ 614
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 330
+ +I N + ++R GR+E + P+ +R + + R + ED+
Sbjct: 615 G--IFVIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERADILQTLVRKLPIEFNEDLR 672
Query: 331 KLVDTFPGQSIDFFGALRAR 350
+L + G S G+L R
Sbjct: 673 RLAEECEGFSGADLGSLLRR 692
>gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605]
Length = 598
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 115/284 (40%), Gaps = 47/284 (16%)
Query: 137 MDKVVVHITK--NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194
+++VV + + F+ L K+P + + G G GK+ + + + G+ ++A E
Sbjct: 164 LEEVVTFLKQPEAFIRL-GAKIPRGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIAASEFV 222
Query: 195 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMV 249
G A +R +R+A K+ C +FI+++DA GAG GG + Q +
Sbjct: 223 ELFVGVGASRVRDLFRQA----KEKSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTL 275
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPT 307
N L M EEN V ++ N L A L+R GR ++ P
Sbjct: 276 NQLLTE------------MDGFEENSGVILLAATNRADVLDAALLRPGRFDRRIDVGLPD 323
Query: 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA-----------LRARVYDDEV 356
R R + + RT P +D V L D + ++ F GA L AR +
Sbjct: 324 RRGREAILAVHARTR--PLDDAVSLSD-WASRTPGFSGADLANLLNEAAILTARQNMLRI 380
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 400
++ E +ERI L N P + K L E G LV
Sbjct: 381 GEFQLEGALERITMGLSNR----PLQDSAKKRLIAYHEVGHALV 420
>gi|328352696|emb|CCA39094.1| peroxin-1 [Komagataella pastoris CBS 7435]
Length = 1131
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 31/199 (15%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A+ G+N I + E+ + G + +R+ + A + K
Sbjct: 812 LYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKP 867
Query: 222 CCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C LF ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R
Sbjct: 868 CILFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRP 919
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDT 335
+I + L+R GR++K P +DR+ + + R NV K V L +
Sbjct: 920 DLIDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SS 967
Query: 336 FPGQSIDFFGA-LRARVYD 353
G+ F GA L+A Y+
Sbjct: 968 VAGECSGFSGADLQALAYN 986
>gi|296410824|ref|XP_002835135.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295627910|emb|CAZ79256.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 161 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 219
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 220 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 268
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 269 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAASVSKEGEIDYE 326
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 327 SIVKMSDQLNGADL 340
>gi|448607714|ref|ZP_21659667.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445737651|gb|ELZ89183.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 412
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|330466003|ref|YP_004403746.1| ATPase central domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328808974|gb|AEB43146.1| ATPase central domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 548
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 25/167 (14%)
Query: 150 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 209
LP + LI G+ G GKS + + A G+ + + G + +G G + +R
Sbjct: 273 GLPAPRGVLITGV---PGCGKSLTAKAIAAAWGLPLLRLDIGRVFAGLVGSSEQNMRTAI 329
Query: 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
R A + C L+I++++ G GGT + ++ + L +
Sbjct: 330 RTA----EASAPCVLWIDEIEKGFA--GGTGDSGTSTRVFGSFLT--------------W 369
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV 314
QE+ V +I T N+ L L+R GR ++ ++ PTR +R +
Sbjct: 370 MQEKKQSVFVIATANNIEALPPELLRKGRFDEIFFVDLPTRAERASI 416
>gi|345561628|gb|EGX44716.1| hypothetical protein AOL_s00188g54 [Arthrobotrys oligospora ATCC
24927]
Length = 787
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + EL + GE + +RQ + A + +
Sbjct: 550 LYGPPGCGKTLLAKAVANESNANFISVKGPELLNKWVGESERAVRQVFMRA----RASQP 605
Query: 222 CCLFINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +F ++LDA AG R TT+ T +++VN L +L G+ +++ V +I
Sbjct: 606 CVIFFDELDALAGKREDATTEAT--SRVVNTLL---------TELDGLSDRKG---VYVI 651
Query: 281 VTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV 314
N + ++R GR++K F PT E+R+ +
Sbjct: 652 AATNRPDMIDPAMLRPGRLDKALFVALPTAEERLDI 687
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 34/225 (15%)
Query: 119 GLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
G+ H+ N + L P H+ +++P + + G G GK+ +
Sbjct: 196 GIEHILNDIHDLIDMPLNCATCYDHL--------GIQIPRGILLHGPPGCGKTMLANAIA 247
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
A G+ I +SA + SG +GE K +R+ + EA + +FI+++DA +
Sbjct: 248 AHHGVPFIPISAPSIVSGMSGESEKKLREIFEEAVKLAP----SIIFIDEIDAVMPKR-D 302
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
+ Q + ++V A ++ D+ + + G NP V +I N +L L R GR
Sbjct: 303 SAQREMEKRIV-AQMLTCMDDLSLSKTGG------NP-VFVIGATNRPDSLDPALRRAGR 354
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDF 343
++ +C G+ D V +E I++++ S DF
Sbjct: 355 FDR-----------EICLGV--PDEVGREKILRVLSEKLKLSGDF 386
>gi|295672730|ref|XP_002796911.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282283|gb|EEH37849.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 354
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 333
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|225680854|gb|EEH19138.1| 26S protease regulatory subunit S10B [Paracoccidioides brasiliensis
Pb03]
Length = 382
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 157 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 215
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 216 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 262
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 263 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 322
Query: 328 DIVKLVDTFPGQSI 341
IVK+ D G +
Sbjct: 323 SIVKMSDGLNGADL 336
>gi|1478008|gb|AAB36380.1| gibberellin A-binding protein, GABP=47 kda
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
homolog [Oryza sativa=rice, leaves, Peptide, 56 aa]
Length = 56
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 194 ESGNAGEPAKLIRQRYREAAD 214
ESGNAGEPAKLIRQRYREAAD
Sbjct: 23 ESGNAGEPAKLIRQRYREAAD 43
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 60 EYDEEKQTSQDRWAGLAYDISD 81
E DE KQT QDRW GLAYDIS+
Sbjct: 2 ELDEGKQTDQDRWKGLAYDISE 23
>gi|397773319|ref|YP_006540865.1| AAA family ATPase, CDC48 subfamily [Natrinema sp. J7-2]
gi|448340956|ref|ZP_21529922.1| AAA family ATPase, CDC48 subfamily protein [Natrinema gari JCM
14663]
gi|397682412|gb|AFO56789.1| AAA family ATPase, CDC48 subfamily [Natrinema sp. J7-2]
gi|445629233|gb|ELY82526.1| AAA family ATPase, CDC48 subfamily protein [Natrinema gari JCM
14663]
Length = 743
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMGNVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|448620265|ref|ZP_21667613.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
gi|445757053|gb|EMA08409.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
Length = 412
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|94499450|ref|ZP_01305987.1| ATPase of the AAA+ class [Bermanella marisrubri]
gi|94428204|gb|EAT13177.1| ATPase of the AAA+ class [Oceanobacter sp. RED65]
Length = 490
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
+FL+ P L + G +G GKS + + + + + G L + GE K
Sbjct: 253 SFLHENESMRPKGLLLLGVQGSGKSLAAKAIAGSWQLPLLRLDMGALYNKFFGETEK--- 309
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
REA ++ + C L++++++ G G V+ +++ L +A+ P V +
Sbjct: 310 -NLREALNLAQLMSPCVLWLDEIEKGLG--TDQNDSGVSQRILGTLLTWMAERPEPVFM- 365
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 324
+ T ND L A ++R GR ++ ++ P E R + + N+
Sbjct: 366 -------------VATANDIQKLPAEMVRKGRFDEVFFVDLPKEESRQAIFEIHLKKRNI 412
Query: 325 PKEDIVKLVDTFPGQSIDFFGA 346
E + +DT QS F GA
Sbjct: 413 DPESVE--LDTCIMQSEGFSGA 432
>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii 17XNL]
gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
yoelii]
Length = 703
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 282 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTA-- 339
Query: 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
KK C +FI+++DA G+ + +N V TL N V+L G E+N
Sbjct: 340 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 384
Query: 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ +I N +L L+R GR++K P
Sbjct: 385 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 416
>gi|452980453|gb|EME80214.1| hypothetical protein MYCFIDRAFT_156006 [Pseudocercospora fijiensis
CIRAD86]
Length = 391
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
+ II+ N TL L+R GR+++ P + R+ V S + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVLKIHASSVQKEGEIDFE 331
Query: 328 DIVKLVDTFPGQSI 341
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|448329681|ref|ZP_21518978.1| AAA family ATPase, CDC48 subfamily protein [Natrinema versiforme
JCM 10478]
gi|445613605|gb|ELY67301.1| AAA family ATPase, CDC48 subfamily protein [Natrinema versiforme
JCM 10478]
Length = 743
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMGNVMVIG 604
Query: 282 TGNDFSTLYAPLIRDGRMEKF 302
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus
abyssi GE5]
gi|380741139|tpe|CCE69773.1| TPA: cell division protein CDC48 [Pyrococcus abyssi GE5]
Length = 795
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENAGVVVIA 657
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
N L L+R GR ++ P +++
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEK 687
>gi|281204612|gb|EFA78807.1| 26S protease regulatory subunit S10B [Polysphondylium pallidum
PN500]
Length = 493
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAIASNLDANFLKVVSSAIVDKYIGESARVIREMFGYAR 226
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 227 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 274
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 327
+V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 275 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDIDFE 332
Query: 328 DIVKLVDTF 336
I KL D F
Sbjct: 333 AISKLADGF 341
>gi|448328811|ref|ZP_21518117.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
gi|445615115|gb|ELY68774.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
Length = 410
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 203
I N + P + ++G G GK+ + V + I M+ EL GE ++
Sbjct: 173 IEPELFNEVGIDPPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSR 232
Query: 204 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263
L+R + ++ ++ + +FI+++DA A R T T + V T+M +
Sbjct: 233 LVRDLF----EMARERQPAIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL------- 279
Query: 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
L M E + II N F L ++R GR ++ P
Sbjct: 280 -LSEMDGFEARGEIRIIAATNRFDMLDRAILRPGRFDRLIEVP 321
>gi|403341369|gb|EJY69989.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 648
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 26/224 (11%)
Query: 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
L N+K P + ++G G K+ + + + G+N I + EL S G+ K IR+
Sbjct: 403 FQLMNLKPPAGILLYGPPGCSKTMIAKALATESGLNFIAIKGPELFSKYVGDTEKAIREI 462
Query: 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 268
+R+A + +F +++DA A + G +++D L M
Sbjct: 463 FRKA----RLSSPSIIFFDEIDAMATQRGNDE-------------TSVSDRALCQLLNEM 505
Query: 269 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTD 322
E +V ++ N + L+R GR ++ + P RE + + G + ++D
Sbjct: 506 DGVESRAQVIVVAATNRLDIIDTALLRPGRFDRLIYVPLPSQQAREQILRINVGKMQKSD 565
Query: 323 NVPKEDIVKLVDTFPGQSIDFF---GALRARVYDDEVRKWISEV 363
++ E + + D G I L+A D + K E+
Sbjct: 566 DIDYEKLARETDGMSGAEIALICREAGLKALTQDMNIEKEDGEL 609
>gi|344210747|ref|YP_004795067.1| proteasome-activating nucleotidase [Haloarcula hispanica ATCC
33960]
gi|343782102|gb|AEM56079.1| proteasome-activating nucleotidase [Haloarcula hispanica ATCC
33960]
Length = 394
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + I M+ EL GE A+L+R + AA + +
Sbjct: 178 LHGSPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAA----EREP 233
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 234 AIIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 283
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 284 ATNRFDMLDRAILRPGRFDRLIEVP 308
>gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1]
Length = 744
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 513 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRAR 572
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ C +F ++LDA + T + + ++VN L +L G+ +E
Sbjct: 573 SSVP----CVIFFDELDALVPKR-STELHEASARVVNTLL---------TELDGLSMREG 618
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320
+ +I N + ++R GR+E + P E+R+ + + R
Sbjct: 619 ---IYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVDILKALIR 664
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+ +P + + G G GK+ C A++G+ I + + SG +GE K +R+ + +A
Sbjct: 201 IPIPRGILLHGPPGCGKTVICRAFAAELGVPFIEILGPSVVSGMSGESEKQVREHFEKAK 260
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256
++ C +FI+++D A + + Q + ++V L+++
Sbjct: 261 EVAP----CLIFIDEIDVIAPKR-DSAQSQMEKRIVAQLLISM 298
>gi|308509962|ref|XP_003117164.1| hypothetical protein CRE_02019 [Caenorhabditis remanei]
gi|308242078|gb|EFO86030.1| hypothetical protein CRE_02019 [Caenorhabditis remanei]
Length = 438
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 23/227 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V I + +L N+GE A+L+RQ ++ A D
Sbjct: 222 LYGEPGTGKTLLAKAVANSTSATFIRATGSDLVQKNSGEGARLVRQIFQMAKDQAP---- 277
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA G R +++ Q V TL+ + + QL G E V +I
Sbjct: 278 SIVFIDEIDAVGTKRFDTSSR---GEQEVQRTLLELLN-----QLDGF---ESRGDVKVI 326
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVD 334
+ N +L LIR GR+++ P TR+ G+ SG+ V + ++
Sbjct: 327 MATNRIDSLDPALIRPGRIDRKIELPRPDEKTRQKIFGIHTSGMTLQKAVTYDSVLGKEK 386
Query: 335 TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR-LVNSKEGPP 380
+ G I + RK +S E+ K ++N K G P
Sbjct: 387 SISGAEIKAVCTEAGMMALRSQRKCVSTDDFEKALKSVMLNKKAGAP 433
>gi|410910898|ref|XP_003968927.1| PREDICTED: peroxisome biogenesis factor 1-like [Takifugu rubripes]
Length = 1120
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F LP +++P + ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 715 FSKLP-IRLPSGILLFGAPGTGKTLLARAVAKESGMNFISIKGPELLSKYIGASEQAVRD 773
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
++ A + K C LF ++ D+ A R G + V +++VN L + D +Q G
Sbjct: 774 VFQRA----QAAKPCILFFDEFDSLAPRRGHDS-TGVTDRVVNQLLTQM-DGVEGLQ--G 825
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNV 324
+Y ++ L P L+R GR++K P E R+ + + + V
Sbjct: 826 VY----------VIAATSRPDLIDPALLRPGRLDKSLHCPPPDLEARVEILKAL--SAGV 873
Query: 325 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEV 356
P V+L + + F GA L+A +Y+ ++
Sbjct: 874 PMATDVEL-EKLAAATEQFTGADLKALLYNAQL 905
>gi|448376207|ref|ZP_21559491.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
gi|445658225|gb|ELZ11048.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
Length = 409
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V K I M+ EL GE ++L+R + ++ ++ +
Sbjct: 190 LYGPPGTGKTMLAKAVATKTDATFIKMAGSELVRKFIGEGSRLVRDLF----ELAREREP 245
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A T T + V T+M + L M E + II
Sbjct: 246 AIIFIDEIDAVAATR--TDSKTSGDAEVQRTMMQL--------LNEMDGFEHRGEISIIA 295
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 296 ATNRFDMLDRAILRPGRFDRLIEVP 320
>gi|433589699|ref|YP_007279195.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|448332706|ref|ZP_21521935.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
gi|433304479|gb|AGB30291.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|445625681|gb|ELY79036.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
Length = 410
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + I M+ EL GE ++L+R + ++ ++ +
Sbjct: 191 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLF----EMARERQP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A R T T + V T+M + L M E V II
Sbjct: 247 AIIFIDEIDAIATRR--TESKTSGDAEVQRTMMQL--------LSEMDGFEARGEVRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDRAILRPGRFDRLIEVP 321
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,541,581,676
Number of Sequences: 23463169
Number of extensions: 330800227
Number of successful extensions: 809439
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 4486
Number of HSP's that attempted gapping in prelim test: 805003
Number of HSP's gapped (non-prelim): 5614
length of query: 473
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 327
effective length of database: 8,933,572,693
effective search space: 2921278270611
effective search space used: 2921278270611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)