BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011983
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 280/293 (95%)
Query: 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 181
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 182 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 241
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 242 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
YTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 302 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361
FYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 362 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 96/102 (94%)
Query: 307 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 366
TREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SEVG++
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 367 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 408
IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
+ FL L KVP + G G GK+ + V + + + M+ E G A +
Sbjct: 29 ERFLQL-GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV 87
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
R ++EA + C ++I+++DA G+ TT +N TL N V++
Sbjct: 88 RSLFKEA----RARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTL-----NQLLVEM 137
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDR 311
GM + V ++ + N L L+R GR+++ F PT ++R
Sbjct: 138 DGMGTTDH---VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
++ P ++G G GK+ A+ + ++A +L GE AKL+ R+A
Sbjct: 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLV----RDAF 267
Query: 214 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ K+ +FI++LDA G R Q L+N QL G + +
Sbjct: 268 ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN--------QLDGFSSDD 319
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRT----DNVPK 326
RV ++ N L L+R GR+++ + P+ + R + R D++
Sbjct: 320 ---RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW 376
Query: 327 EDIVKLVDTFPGQSI 341
+++ + D F G +
Sbjct: 377 QELARSTDEFNGAQL 391
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V + G+N I + EL + GE + +RQ ++ A K
Sbjct: 49 LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAP 104
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F +++DA R + + ++VN L M E +V I+
Sbjct: 105 CVIFFDEVDALCPRR-SDRETGASVRVVNQLLTE------------MDGLEARQQVFIMA 151
Query: 282 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED 328
N + ++R GR++K F P DR+ + I + P D
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLD 200
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 26/197 (13%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V + + + EL G+ +L RQ ++ A
Sbjct: 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYN 270
+ +FI+++DA GT +Y N+ + + T++ + + QL G +
Sbjct: 273 E----NAPSIVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN-----QLDGFDD 318
Query: 271 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAP---TREDRIGV-CSGIFRTDNV 324
+ + V +I+ N TL LIR GR+++ + P T++ +G+ S + +++V
Sbjct: 319 RGD---VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV 375
Query: 325 PKEDIVKLVDTFPGQSI 341
E +V D G I
Sbjct: 376 NLETLVTTKDDLSGADI 392
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V I ++ E GE +++R +R A ++
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAP 266
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++D+ A + T +++ V L+ + Q+ G ++Q N V +I+
Sbjct: 267 SIIFIDEVDSIATKRFDAQ--TGSDREVQRILIELL-----TQMDG-FDQSTN--VKVIM 316
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 311
N TL L+R GR+++ P+ DR
Sbjct: 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 218
++G G GK+ V I +S EL GE ++++R+ + RE A I
Sbjct: 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI-- 244
Query: 219 GKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
+F++++D+ G+ R+ G+ Q L+N QL G E + +
Sbjct: 245 -----IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN--------QLDGF---ETSKNI 288
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
II+ N L L+R GR+++ P
Sbjct: 289 KIIMATNRLDILDPALLRPGRIDRKIEFP 317
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V + I + EL GE A+++R+ + ++ + K
Sbjct: 248 LYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF----EMARTKKA 303
Query: 222 CCLFINDLDA-GAGRM----GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276
C +F +++DA G R GG + V T++ + QL G +PR
Sbjct: 304 CIIFFDEIDAVGGARFDDGAGGDNE-------VQRTMLELI-----TQLDGF-----DPR 346
Query: 277 --VPIIVTGNDFSTLYAPLIRDGRMEK 301
+ ++ N +TL L+R GR+++
Sbjct: 347 GNIKVMFATNRPNTLDPALLRPGRIDR 373
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL---ESGNAGEPAKLIRQRYREAADI 215
I+ I GG G GK QCE + K G +S GEL E + E +KLIR DI
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFT--HLSTGELLREELASESERSKLIR-------DI 64
Query: 216 IKKGKM 221
+++G +
Sbjct: 65 MERGDL 70
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 222
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 223 CLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
LF ++LD A A ++++N L ++ GM ++ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLVD 334
N + ++R GR+++ + P ++ R+ + R V K E + K+ +
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 335 TFPGQSI 341
F G +
Sbjct: 681 GFSGADL 687
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 163 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 222
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 223 CLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
LF ++LD A A ++++N L ++ GM ++ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLVD 334
N + ++R GR+++ + P ++ R+ + R V K E + K+ +
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 335 TFPGQSI 341
F G +
Sbjct: 681 GFSGADL 687
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 65 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 120
Query: 222 CCLFINDLDAGAGRMG 237
+FI+++DA G G
Sbjct: 121 SIIFIDEVDALTGTRG 136
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 111
Query: 222 CCLFINDLDAGAGRMG 237
+FI+ +DA G G
Sbjct: 112 SIIFIDQVDALTGTRG 127
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 214 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 255
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 129
Query: 222 CCLFINDLDAGAGRMG 237
+FI+ +DA G G
Sbjct: 130 SIIFIDQVDALTGTRG 145
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 144
Query: 222 CCLFINDLDAGAGRMG 237
+FI+ +DA G G
Sbjct: 145 SIIFIDQVDALTGTRG 160
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 214
K+P + + G G GK+ + + + + +S + G A +R + +A
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA-- 100
Query: 215 IIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269
KK C +FI+++DA GAG GG + Q +N L+ M
Sbjct: 101 --KKAAPCIIFIDEIDAVGRQRGAGLGGGHDE---REQTLNQMLVE------------MD 143
Query: 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301
E N + +I N L L+R GR ++
Sbjct: 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 175
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+G G GK+ + + + N I + EL + GE +R+ + +A ++
Sbjct: 54 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAP 109
Query: 222 CCLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279
C LF ++LD A A ++++N L ++ GM ++ V I
Sbjct: 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKK---NVFI 157
Query: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLV 333
I N + ++R GR+++ + P ++ R+ + R V K E + K+
Sbjct: 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 217
Query: 334 DTFPGQSI 341
+ F G +
Sbjct: 218 NGFSGADL 225
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193
PL++ + GG G GK QC + K G +SAGEL
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL 37
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRYREAADI 215
I+ + GG G GK QCE + K G + + E+ SG+A R ++ ++I
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---------RGKKLSEI 61
Query: 216 IKKGKMCCL 224
++KG++ L
Sbjct: 62 MEKGQLVPL 70
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 216
P ++G+ GG GKS CE + +G N + QR R+ I+
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLGQNE-------------------VEQRQRKVV-IL 64
Query: 217 KKGKMCCLFINDLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274
+ + + + A A G+ +N +++ TL NI + T V++P Y+ +
Sbjct: 65 SQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKT-VEVP-TYDFVTH 122
Query: 275 PRVP 278
R+P
Sbjct: 123 SRLP 126
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 151 LPNVKVPLILGI---------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
LP+++ L G+ +G G GK+ + V A+ +SA L S GE
Sbjct: 133 LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEG 192
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDA 231
KL+R + A ++ + +FI+ +D+
Sbjct: 193 EKLVRALFAVAREL----QPSIIFIDQVDS 218
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186
PN P ++G+ GG GKS C + +G N +
Sbjct: 15 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 49
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRY 209
+K I+ + GG G GK QCE + K G + + E+ SG+A R
Sbjct: 5 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSA---------RG 55
Query: 210 REAADIIKKGKMCCL 224
+ ++I++KG++ L
Sbjct: 56 KMLSEIMEKGQLVPL 70
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186
PN P ++G+ GG GKS C + +G N +
Sbjct: 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 51
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 191 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 250
GE+ + G A+L+ Q R+ + +FIN+L G M G+ + T + +
Sbjct: 159 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALK 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,971,200
Number of Sequences: 62578
Number of extensions: 609106
Number of successful extensions: 1287
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 57
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)