BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011983
(473 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/479 (84%), Positives = 438/479 (91%), Gaps = 9/479 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 417 SEAALGDANDDAIKNGSFY-GKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
SEAALGDAN+DAIK G+FY G+AAQQV VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct: 418 SEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 416/476 (87%), Gaps = 5/476 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
LR +LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 418 EAALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
+AALGDAN DAI G+FYGK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct: 419 QAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/438 (85%), Positives = 405/438 (92%), Gaps = 7/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
GLR +LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 417 SEAALGDANDDAIKNGSF 434
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/448 (82%), Positives = 403/448 (89%), Gaps = 7/448 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITK 146
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 147 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 206
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQV-KVP 445
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG+ AQQ +P
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLP 438
Query: 446 VPEGCTDPAAANYDPTARSDDGSCNYQF 473
VPEGCTDP A N+DPTARSDDGSC Y F
Sbjct: 439 VPEGCTDPVAKNFDPTARSDDGSCLYTF 466
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/439 (81%), Positives = 398/439 (90%), Gaps = 5/439 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 176
S GLR LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 STGLRQLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 177 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+
Sbjct: 180 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRL 239
Query: 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 297 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
GRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 357 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416
RKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
Query: 417 SEAALGDANDDAIKNGSFY 435
+EAALG+AN+DAIK+GSF+
Sbjct: 420 NEAALGNANEDAIKSGSFF 438
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/475 (75%), Positives = 403/475 (84%), Gaps = 5/475 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RH--LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 419 AALGDANDDAIKNGSFYGKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 473
AALGDAN DAI G+F+GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct: 418 AALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/446 (79%), Positives = 395/446 (88%), Gaps = 5/446 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHITKN 147
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 327
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 328 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGKAAQQVKVPVP 447
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYGK AQQ +PVP
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP 438
Query: 448 EGCTDPAAANYDPTARSDDGSCNYQF 473
EGCTD A NYDPTARSDDGSC Y F
Sbjct: 439 EGCTDQNAKNYDPTARSDDGSCLYTF 464
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/438 (81%), Positives = 396/438 (90%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R + DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 418
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 419 AALGDANDDAIKNGSFYG 436
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/441 (80%), Positives = 389/441 (88%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
SQGLR +LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 415 YLSEAALGDANDDAIKNGSFY 435
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/441 (79%), Positives = 393/441 (89%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
S GLR + DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 415 YLSEAALGDANDDAIKNGSFY 435
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/440 (77%), Positives = 384/440 (87%), Gaps = 7/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 174
SQGLR ++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 175 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 295 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 355 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 415 YLSEAALGDANDDAIKNGSF 434
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/435 (77%), Positives = 384/435 (88%), Gaps = 6/435 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LR--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 177
L+ LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 178 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 298 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 358 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 417
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 418 EAALGDANDDAIKNG 432
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/412 (81%), Positives = 370/412 (89%), Gaps = 8/412 (1%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRH--LDNTLDGLYIAPAFMDKVVVHIT 145
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 265
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 266 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 325
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 326 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 385
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 386 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYGK 437
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYGK
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/413 (80%), Positives = 367/413 (88%), Gaps = 6/413 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 R--HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 178
R DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 238
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 299 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 359 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 411
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/414 (80%), Positives = 367/414 (88%), Gaps = 9/414 (2%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVV 141
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + + DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 261
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 262 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 321
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 322 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 381
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 382 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 435
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/382 (66%), Positives = 305/382 (79%), Gaps = 8/382 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILG 161
+G TH AV+SS +Y+SQ +N DG YI+PAF+DK+ +HI KNF++LP +KVPLILG
Sbjct: 76 AGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
IWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+M
Sbjct: 136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI+
Sbjct: 196 CSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVC 255
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 341
TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQSI
Sbjct: 256 TGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSI 315
Query: 342 DFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGRML 399
DFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+ L
Sbjct: 316 DFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGKSL 372
Query: 400 VQEQENVKRVQLADKYLSEAAL 421
V EQENVKRVQLAD YLS A L
Sbjct: 373 VDEQENVKRVQLADAYLSGAEL 394
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/332 (57%), Positives = 240/332 (72%), Gaps = 16/332 (4%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 429
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y + +
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRL 292
Query: 430 KNGSFYGKAAQQVKV----PVPEGCTDPAAAN 457
G Y A+ ++ P P G P +A+
Sbjct: 293 NRGRSYQPASPVAEIATSQPSPNGVNQPQSAS 324
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 131 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 191 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 249
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 250 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 310 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 369
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 370 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 415
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 138/275 (50%), Gaps = 135/275 (49%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIA 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193
VPLILGIWGGK MGINPIMMSAGEL
Sbjct: 47 ----------------------VPLILGIWGGK--------------MGINPIMMSAGEL 70
Query: 194 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 253
ESGNAGEPA KMCCLFINDLDAGAG
Sbjct: 71 ESGNAGEPA-----------------KMCCLFINDLDAGAG------------------- 94
Query: 254 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 313
RVPIIVTGNDFSTLYAPLI RIG
Sbjct: 95 ----------------------RVPIIVTGNDFSTLYAPLI----------------RIG 116
Query: 314 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 348
VC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 117 VCTGIFR-----------LVDTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 42/61 (68%), Gaps = 17/61 (27%)
Query: 180 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239
+MGINPIMMSAGELESGNAGEPA KMCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVC 57
Query: 240 T 240
T
Sbjct: 58 T 58
Score = 35.4 bits (80), Expect = 0.94, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 74 GLAYDISDDQQDITR 88
GLAYDISDDQQDITR
Sbjct: 1 GLAYDISDDQQDITR 15
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 212
N+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFR----TDNVPK 326
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 327 EDIVKLVDTFPGQSID 342
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 274 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 311
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 28/60 (46%)
Query: 332 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 391
LVDTFPGQSIDFFGALR EGPPTFEQP MT++K
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 335
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 336 FPGQSI 341
F G +
Sbjct: 338 FNGADL 343
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 327
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 328 DIVKLVDTFPGQSI 341
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 327
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 328 DIVKLVDTFPGQSI 341
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 320
N F L ++R GR ++ P +G IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 114/264 (43%), Gaps = 41/264 (15%)
Query: 116 ISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 175
+++ +R L ++ I P +V + K L ++G G GK+
Sbjct: 155 LAEQIRELREVVELPLINPELFKRVGITPPKGCL------------LFGPPGTGKTLLAR 202
Query: 176 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235
V +++ N + + + + GE A++IR+ + A D + C +F++++DA GR
Sbjct: 203 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQPCIVFMDEIDAIGGR 258
Query: 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 295
++ T ++ + TLM + + QL G + +V +I+ N TL L+R
Sbjct: 259 R--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIMATNRPDTLDPALLR 308
Query: 296 DGRMEKFYWA--PTREDRIGVC----SGIFRTDNVPKEDIVKLVDTFPGQSID------- 342
GR+++ P + R+ + + I + + E +VKL D F +
Sbjct: 309 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 368
Query: 343 FFG--ALRARVYDDEVRKWISEVG 364
F A R V D++ K + +VG
Sbjct: 369 MFAIRAEREFVIDEDFMKAVRKVG 392
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
K +FI+++D R + V TLM+ ++ P++
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 161
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 314
PRV ++ + N + L R GR + P EDR+ +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 321
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVP 319
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 280
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGV-CSGIFRTDNVPKE 327
+V II+ N L L+R GR+++ P R D + + + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 328 DIVKLVDTF 336
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 121 RHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 180
R + T++ + P ++ + +K FL ++G G GK+ + V +
Sbjct: 477 REIKETVELPLLKPDVFKRLGIRPSKGFL------------LYGPPGVGKTLLAKAVATE 524
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 240
N I + E+ S GE K IR+ +++A K+ +F++++D+ A R G T+
Sbjct: 525 SNANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAPAIVFLDEIDSIAPRRGTTS 580
Query: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300
V ++VN L + L G+ E V +I N + L+R GR +
Sbjct: 581 DSGVTERIVNQLLTS---------LDGI---EVMNGVVVIGATNRPDIMDPALLRAGRFD 628
Query: 301 KFYW--APTREDRIGVCSGIFRTDNVP 325
K + P +E R+ + T N+P
Sbjct: 629 KLIYIPPPDKEARLSILK--VHTKNMP 653
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 302
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1
PE=3 SV=1
Length = 1157
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 31/199 (15%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ V A+ G+N I + E+ + G + +R+ + A + K
Sbjct: 838 LYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKP 893
Query: 222 CCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277
C LF ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R
Sbjct: 894 CILFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRP 945
Query: 278 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDT 335
+I + L+R GR++K P +DR+ + + R NV K V L +
Sbjct: 946 DLIDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SS 993
Query: 336 FPGQSIDFFGA-LRARVYD 353
G+ F GA L+A Y+
Sbjct: 994 VAGECSGFSGADLQALAYN 1012
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 282 TGNDFSTLYAPLIRDGRMEKFYWAP 306
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 214 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 326
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 327 EDIVKLVDTFPGQSI 341
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++ A
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLA- 260
Query: 214 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 261 ---KEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 326
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 327 EDIVKLVDTFPGQSI 341
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
VK P ++G G GK+ A+ + ++A +L G+ AKL+ R+A
Sbjct: 216 VKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAF 271
Query: 214 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 272
+ K+ +FI++LDA G R ++ V T++ + + QL G + +
Sbjct: 272 ALAKEKSPAIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSSDD 323
Query: 273 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPK 326
RV +I N TL L+R GR+++ + P E R+G+ R D++
Sbjct: 324 ---RVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINW 380
Query: 327 EDIVKLVDTFPG 338
E++ + D + G
Sbjct: 381 EELARSTDEYNG 392
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
+ G G GK+ V + + + + EL GE A+L+R+ + ++ KK
Sbjct: 192 LHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELF----ELAKKKSP 247
Query: 222 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
+FI+++DA GA R T T ++ V+ TLM + ++ G N+ + V II
Sbjct: 248 SIIFIDEIDAIGASR---TESNTSGDREVHRTLMQLL-----AEMDGFSNRGD---VRII 296
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVD 334
N L L+R GR ++ AP E R+ + C+G+ V DI D
Sbjct: 297 GATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTD 356
>sp|Q9HNP9|PAN2_HALSA Proteasome-activating nucleotidase 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan2 PE=3
SV=1
Length = 411
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 213
V+ P + + G G GK+ + V + + I M+ EL GE ++L+R +
Sbjct: 183 VEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 273
++ ++ +FI+++DA A + T T + V T+M + L M +E
Sbjct: 239 ELAEQKDPAIIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 288
Query: 274 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
+ II N F L + ++R GR ++ P
Sbjct: 289 RGDIRIIAATNRFDMLDSAILRPGRFDRLIEVP 321
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 222 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280
C +F ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 281 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTF 336
N L + L+R GR+++ + + +E++ + + R N+ + D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 337 P 337
P
Sbjct: 1121 P 1121
>sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2
Length = 1284
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 32/216 (14%)
Query: 148 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 207
F NLP + IL ++G G GK+ +V + G+N I + EL S G + +R
Sbjct: 867 FANLPIRQRTGIL-LYGPPGTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRD 925
Query: 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
+ A + K C LF ++ ++ A R G V +++VN L + D +Q G
Sbjct: 926 VFIRA----QAAKPCILFFDEFESIAPRRGHDN-TGVTDRVVNQLLTQL-DGVEGLQ--G 977
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP-----TREDRIGVCS-GIFR 320
+Y ++ L P L+R GR++K + P +R + + V S +
Sbjct: 978 VY----------VLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLAL 1027
Query: 321 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356
D+V + + + D+F G L+A +Y+ ++
Sbjct: 1028 ADDVDLQHVASVTDSFTG------ADLKALLYNAQL 1057
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 38/241 (15%)
Query: 157 PLILGIWGGK--------GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 208
P + G W K G GK+ + + + I++ A EL + G+ +K+IR+
Sbjct: 146 PKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIREL 205
Query: 209 YREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 267
Y+ A++ C +FI++LDA G R + + V +++VNA L +L G
Sbjct: 206 YQRASE----SAPCIVFIDELDAIGLSREYQSLRGDV-SEVVNALL---------TELDG 251
Query: 268 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCSGIFRTDNVP- 325
+ +EN V I N+ + L P IR E+ + P E+R+ + + +P
Sbjct: 252 I---KENEGVVTIAATNNPAML-DPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPV 307
Query: 326 KEDIVKLVDT---FPGQSID---FFGALRARVYDDEVRKWISEVGIERIGKRLV-NSKEG 378
K ++ + V+ F G+ I AL + +D R ++S+ +E K+++ N +E
Sbjct: 308 KANLKEFVEKTKGFSGRDIKEKFLKPALHRAILED--RDYVSKEDLEWALKKILGNRREA 365
Query: 379 P 379
P
Sbjct: 366 P 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,635,462
Number of Sequences: 539616
Number of extensions: 7948947
Number of successful extensions: 20885
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 20563
Number of HSP's gapped (non-prelim): 480
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)